from itertools import count import cv2 import numpy as np import pdf2image from matplotlib import pyplot as plt from timeit import timeit def parse(image: np.array): gray_scale = cv2.cvtColor(image, cv2.COLOR_BGR2GRAY) th1, img_bin = cv2.threshold(gray_scale, 200, 255, cv2.THRESH_BINARY) img_bin = ~img_bin line_min_width = 5 kernel_h = np.ones((1, line_min_width), np.uint8) kernel_v = np.ones((line_min_width, 1), np.uint8) img_bin_h = cv2.morphologyEx(img_bin, cv2.MORPH_OPEN, kernel_h) img_bin_v = cv2.morphologyEx(img_bin, cv2.MORPH_OPEN, kernel_v) # print([cv2.countNonZero(row) for row in img_bin_v]) img_bin_final = img_bin_h | img_bin_v find_and_close_edges(img_bin_final) _, labels, stats, _ = cv2.connectedComponentsWithStats(~img_bin_final, connectivity=8, ltype=cv2.CV_32S) return labels, stats # def filter_unconnected_cells(stats): # filtered_cells = [] # for left, middle, right in zip(stats[0:], stats[1:], list(stats[2:])+[None]): # x, y, w, h, area = middle # if w > 35 and h > 13 and area > 500: # if y == left[1] or y == right[1]: # filtered_cells.append(middle) # return filtered_cells def filter_unconnected_cells(stats): filtered_cells = [] # print(stats) for left, middle, right in zip(stats[0:], stats[1:], list(stats[2:]) + [np.array([None, None, None, None, None])]): x, y, w, h, area = middle if w > 35 and h > 13 and area > 500: if right[1] is None: if y == left[1] or x == left[0]: filtered_cells.append(middle) else: if y == left[1] or y == right[1] or x == left[0] or x == right[0]: filtered_cells.append(middle) return filtered_cells # def annotate_image(image, stats): # stats = filter_unconnected_cells(stats) # for i,val in enumerate(stats): # x, y, w, h, area = stats[i][0], stats[i][1], stats[i][2], stats[i][3], stats[i][4] # cv2.rectangle(image, (x, y), (x + w, y + h), (255, 0, 255), 2) # # for i, (s, v) in enumerate(zip(["x", "y", "w", "h"], [x, y, w, h])): # anno = f"{s} = {v}" # xann = int(x + 5) # yann = int(y + h - (20 * (i + 1))) # cv2.putText(image, anno, (xann, yann), cv2.FONT_HERSHEY_SIMPLEX, 0.7, (255, 0, 255), 2) # # return image def annotate_image(image, stats): stats = filter_unconnected_cells(stats) for stat in stats: x, y, w, h, area = stat cv2.rectangle(image, (x, y), (x + w, y + h), (255, 0, 255), 2) for i, (s, v) in enumerate(zip(["x", "y", "w", "h"], [x, y, w, h])): anno = f"{s} = {v}" xann = int(x + 5) yann = int(y + h - (20 * (i + 1))) cv2.putText(image, anno, (xann, yann), cv2.FONT_HERSHEY_SIMPLEX, 0.7, (255, 0, 255), 2) return image def find_and_close_edges(img_bin_final): contours, hierarchy = cv2.findContours(img_bin_final, cv2.RETR_TREE, cv2.CHAIN_APPROX_SIMPLE) for cnt in contours: missing_external_edges = True left = tuple(cnt[cnt[:, :, 0].argmin()][0]) right = tuple(cnt[cnt[:, :, 0].argmax()][0]) top = tuple(cnt[cnt[:, :, 1].argmin()][0]) bottom = tuple(cnt[cnt[:, :, 1].argmax()][0]) topleft = [left[0] + 1, top[1]] # print(cnt, left, top, topleft) bottomright = [right[0] - 1, bottom[1]] for arr in cnt: if np.array_equal(arr, np.array([bottomright])) or np.array_equal(arr, np.array([topleft])): missing_external_edges = False break if missing_external_edges and (bottomright[0]-topleft[0])*(bottomright[1]-topleft[1])>= 50000: topleft[0] -= 1 bottomright[0] += 1 cv2.rectangle(img_bin_final, tuple(topleft), tuple(bottomright), (255,255,255) , 2) print("missing cell detectet rectangle drawn") return img_bin_final def parse_tables_in_pdf(pages): return zip(map(parse, pages), count()) def annotate_tables_in_pdf(pdf_path, page_index=1): timeit() page = pdf2image.convert_from_path(pdf_path, first_page=page_index + 1, last_page=page_index + 1)[0] page = np.array(page) _, stats = parse(page) page = annotate_image(page, stats) print(timeit()) fig, ax = plt.subplots(1, 1) fig.set_size_inches(20, 20) ax.imshow(page) plt.show()