Matthias Bisping ddd8d4685e Pull request #9: Tdd refactoring
Merge in RR/image-prediction from tdd_refactoring to master

Squashed commit of the following:

commit f6c64430007590f5d2b234a7f784e26025d06484
Author: Matthias Bisping <matthias.bisping@iqser.com>
Date:   Mon Apr 25 12:18:47 2022 +0200

    renaming

commit 8f40b51282191edf3e2a5edcd6d6acb388ada453
Author: Matthias Bisping <matthias.bisping@iqser.com>
Date:   Mon Apr 25 12:07:18 2022 +0200

    adjusted expetced output for alpha channel in response

commit 7e666302d5eadb1e84b70cae27e8ec6108d7a135
Author: Matthias Bisping <matthias.bisping@iqser.com>
Date:   Mon Apr 25 11:52:51 2022 +0200

    added alpha channel check result to response

commit a6b9f64b51cd888fc0c427a38bd43ae2ae2cb051
Author: Matthias Bisping <matthias.bisping@iqser.com>
Date:   Mon Apr 25 11:27:57 2022 +0200

    readme updated

commit 0d06ad657e3c21dcef361c53df37b05aba64528b
Author: Matthias Bisping <matthias.bisping@iqser.com>
Date:   Mon Apr 25 11:19:35 2022 +0200

    readme updated and config

commit 75748a1d82f0ebdf3ad7d348c6d820c8858aa3cb
Author: Matthias Bisping <matthias.bisping@iqser.com>
Date:   Mon Apr 25 11:19:26 2022 +0200

    refactoring

commit 60101337828d11f5ee5fed0d8c4ec80cde536d8a
Author: Matthias Bisping <matthias.bisping@iqser.com>
Date:   Mon Apr 25 11:18:23 2022 +0200

    multiple reoutes for prediction

commit c8476cb5f55e470b831ae4557a031a2c1294eb86
Author: Matthias Bisping <matthias.bisping@iqser.com>
Date:   Mon Apr 25 11:17:49 2022 +0200

    add banner.txt to container

commit 26ef5fce8a9bc015f1c35f32d40e8bea50a96454
Author: Matthias Bisping <Matthias.Bisping@iqser.com>
Date:   Mon Apr 25 10:08:49 2022 +0200

    Pull request #8: Pipeline refactoring

    Merge in RR/image-prediction from pipeline_refactoring to tdd_refactoring

    Squashed commit of the following:

    commit 6989fcb3313007b7eecf4bba39077fcde6924a9a
    Author: Matthias Bisping <matthias.bisping@iqser.com>
    Date:   Mon Apr 25 09:49:49 2022 +0200

        removed obsolete module

    commit 7428aeee37b11c31cffa597c85b018ba71e79a1d
    Author: Matthias Bisping <matthias.bisping@iqser.com>
    Date:   Mon Apr 25 09:45:45 2022 +0200

        refactoring

    commit 0dcd3894154fdf34bd3ba4ef816362434474f472
    Author: Matthias Bisping <matthias.bisping@iqser.com>
    Date:   Mon Apr 25 08:57:21 2022 +0200

        refactoring; removed obsolete extractor-classifier

    commit 1078aa81144f4219149b3fcacdae8b09c4b905c0
    Author: Matthias Bisping <matthias.bisping@iqser.com>
    Date:   Fri Apr 22 17:18:10 2022 +0200

        removed obsolete imports

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    Author: Matthias Bisping <matthias.bisping@iqser.com>
    Date:   Fri Apr 22 17:16:25 2022 +0200

        comment changed

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    Author: Matthias Bisping <matthias.bisping@iqser.com>
    Date:   Fri Apr 22 17:12:11 2022 +0200

        refactoring

    commit 8abc9010048078868b235d6793ac6c8b20abb985
    Author: Matthias Bisping <matthias.bisping@iqser.com>
    Date:   Thu Apr 21 21:25:47 2022 +0200

        formatting

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    Author: Matthias Bisping <matthias.bisping@iqser.com>
    Date:   Thu Apr 21 21:24:05 2022 +0200

        formatting

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    Author: Matthias Bisping <matthias.bisping@iqser.com>
    Date:   Thu Apr 21 21:20:18 2022 +0200

        refactoring

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    Author: Matthias Bisping <matthias.bisping@iqser.com>
    Date:   Thu Apr 21 21:04:57 2022 +0200

        refactoring

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    Author: Matthias Bisping <matthias.bisping@iqser.com>
    Date:   Thu Apr 21 19:48:05 2022 +0200

        refactoring

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    Author: Matthias Bisping <matthias.bisping@iqser.com>
    Date:   Thu Apr 21 19:43:39 2022 +0200

        refactoring

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    Author: Matthias Bisping <matthias.bisping@iqser.com>
    Date:   Wed Apr 20 18:30:41 2022 +0200

        refactoring pipeline WIP

commit 120721f5f1a7e910c0c2ebc79dc87c2908794c80
Author: Matthias Bisping <matthias.bisping@iqser.com>
Date:   Wed Apr 20 15:39:58 2022 +0200

    rm debug ls

commit 81226d4f8599af0db0e9718fbb1789cfad91a855
Author: Matthias Bisping <matthias.bisping@iqser.com>
Date:   Wed Apr 20 15:28:27 2022 +0200

    no compose down

commit 943f7799d49b6a6b0fed985a76ed4fe725dfaeef
Author: Matthias Bisping <matthias.bisping@iqser.com>
Date:   Wed Apr 20 15:22:17 2022 +0200

    coverage combine

commit d4cd96607157ea414db417cfd7133f56cb56afe1
Author: Matthias Bisping <matthias.bisping@iqser.com>
Date:   Wed Apr 20 14:43:09 2022 +0200

    model builder path in mlruns adjusted

commit 5b90bb47c3421feb6123c179eb68d1125d58ff1e
Author: Matthias Bisping <matthias.bisping@iqser.com>
Date:   Wed Apr 20 10:56:58 2022 +0200

    dvc pull in test running script

commit a935cacf2305a4a78a15ff571f368962f4538369
Author: Matthias Bisping <matthias.bisping@iqser.com>
Date:   Wed Apr 20 10:50:36 2022 +0200

    no clean working dir

commit ba09df7884485b8ab8efbf42a8058de9af60c75c
Author: Matthias Bisping <matthias.bisping@iqser.com>
Date:   Wed Apr 20 10:43:22 2022 +0200

    debug ls

commit 71263a9983dbfe2060ef5b74de7cc2cbbad43416
Author: Matthias Bisping <matthias.bisping@iqser.com>
Date:   Wed Apr 20 09:11:03 2022 +0200

    debug ls

commit 41fbadc331e65e4ffe6d053e2d925e5e0543d8b7
Author: Matthias Bisping <matthias.bisping@iqser.com>
Date:   Tue Apr 19 20:08:08 2022 +0200

    debug echo

commit bb19698d640b3a99ea404e5b4b06d719a9bfe9e9
Author: Matthias Bisping <matthias.bisping@iqser.com>
Date:   Tue Apr 19 20:01:59 2022 +0200

    skip server predict test

commit 5094015a87fc0976c9d3ff5d1f4c6fdbd96b7eae
Author: Matthias Bisping <matthias.bisping@iqser.com>
Date:   Tue Apr 19 19:05:50 2022 +0200

    sonar stage after build stage

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Setup

Build base image

docker build -f Dockerfile_base -t image-prediction-base .
docker build -f Dockerfile -t image-prediction .

Usage

Without Docker

py scripts/run_pipeline.py /path/to/a/pdf

With Docker

Shell 1

docker run --rm --net=host image-prediction

Shell 2

python scripts/pyinfra_mock.py /path/to/a/pdf

Tests

Run for example this command to execute all tests and get a coverage report:

coverage run -m pytest test --tb=native -q -s -vvv -x && coverage combine && coverage report -m

After having built the service container as specified above, you can also run tests in a container as follows:

./run_tests.sh

Message Body Formats

Request Format

The request messages need to provide the fields "dossierId" and "fileId". A request should look like this:

{
    "dossierId": "<string identifier>",
    "fileId": "<string identifier>"
}

Any additional keys are ignored.

Response Format

Response bodies contain information about the identified class of the image, the confidence of the classification, the position and size of the image as well as the results of additional convenience filters which can be configured through environment variables. A response body looks like this:

{
  "dossierId": "debug",
  "fileId": "13ffa9851740c8d20c4c7d1706d72f2a",
  "data": [...]
}

An image metadata record (entry in "data" field of a response body) looks like this:

{
  "classification": {
    "label": "logo",
    "probabilities": {
      "logo": 1.0,
      "signature": 1.1599173226749333e-17,
      "other": 2.994595513398207e-23,
      "formula": 4.352109377281029e-31
    }
  },
  "position": {
    "x1": 475.95,
    "x2": 533.4,
    "y1": 796.47,
    "y2": 827.62,
    "pageNumber": 6
  },
  "geometry": {
    "width": 57.44999999999999,
    "height": 31.149999999999977
  },
  "alpha": false,
  "filters": {
    "geometry": {
      "imageSize": {
        "quotient": 0.05975350599135938,
        "tooLarge": false,
        "tooSmall": false
      },
      "imageFormat": {
        "quotient": 1.8443017656500813,
        "tooTall": false,
        "tooWide": false
      }
    },
    "probability": {
      "unconfident": false
    },
    "allPassed": true
  }
}

Configuration

A configuration file is located under config.yaml. All relevant variables can be configured via exporting environment variables.

Environment Variable Default Description
LOGGING_LEVEL_ROOT "INFO" Logging level for log file messages
VERBOSE true Service prints document processing progress to stdout
BATCH_SIZE 16 Number of images in memory simultaneously per service instance
RUN_ID "fabfb1f192c745369b88cab34471aba7" The ID of the mlflow run to load the image classifier from
MIN_REL_IMAGE_SIZE 0.05 Minimally permissible image size to page size ratio
MAX_REL_IMAGE_SIZE 0.75 Maximally permissible image size to page size ratio
MIN_IMAGE_FORMAT 0.1 Minimally permissible image width to height ratio
MAX_IMAGE_FORMAT 10 Maximally permissible image width to height ratio

See also: https://git.iqser.com/projects/RED/repos/helm/browse/redaction/templates/image-service-v2

Description
Analysis container service for redai-image
Readme 1.8 MiB
2025-01-31 13:08:10 +01:00
Languages
Python 96.5%
Dockerfile 1.8%
Shell 1.7%