Matthias Bisping ddd8d4685e Pull request #9: Tdd refactoring
Merge in RR/image-prediction from tdd_refactoring to master

Squashed commit of the following:

commit f6c64430007590f5d2b234a7f784e26025d06484
Author: Matthias Bisping <matthias.bisping@iqser.com>
Date:   Mon Apr 25 12:18:47 2022 +0200

    renaming

commit 8f40b51282191edf3e2a5edcd6d6acb388ada453
Author: Matthias Bisping <matthias.bisping@iqser.com>
Date:   Mon Apr 25 12:07:18 2022 +0200

    adjusted expetced output for alpha channel in response

commit 7e666302d5eadb1e84b70cae27e8ec6108d7a135
Author: Matthias Bisping <matthias.bisping@iqser.com>
Date:   Mon Apr 25 11:52:51 2022 +0200

    added alpha channel check result to response

commit a6b9f64b51cd888fc0c427a38bd43ae2ae2cb051
Author: Matthias Bisping <matthias.bisping@iqser.com>
Date:   Mon Apr 25 11:27:57 2022 +0200

    readme updated

commit 0d06ad657e3c21dcef361c53df37b05aba64528b
Author: Matthias Bisping <matthias.bisping@iqser.com>
Date:   Mon Apr 25 11:19:35 2022 +0200

    readme updated and config

commit 75748a1d82f0ebdf3ad7d348c6d820c8858aa3cb
Author: Matthias Bisping <matthias.bisping@iqser.com>
Date:   Mon Apr 25 11:19:26 2022 +0200

    refactoring

commit 60101337828d11f5ee5fed0d8c4ec80cde536d8a
Author: Matthias Bisping <matthias.bisping@iqser.com>
Date:   Mon Apr 25 11:18:23 2022 +0200

    multiple reoutes for prediction

commit c8476cb5f55e470b831ae4557a031a2c1294eb86
Author: Matthias Bisping <matthias.bisping@iqser.com>
Date:   Mon Apr 25 11:17:49 2022 +0200

    add banner.txt to container

commit 26ef5fce8a9bc015f1c35f32d40e8bea50a96454
Author: Matthias Bisping <Matthias.Bisping@iqser.com>
Date:   Mon Apr 25 10:08:49 2022 +0200

    Pull request #8: Pipeline refactoring

    Merge in RR/image-prediction from pipeline_refactoring to tdd_refactoring

    Squashed commit of the following:

    commit 6989fcb3313007b7eecf4bba39077fcde6924a9a
    Author: Matthias Bisping <matthias.bisping@iqser.com>
    Date:   Mon Apr 25 09:49:49 2022 +0200

        removed obsolete module

    commit 7428aeee37b11c31cffa597c85b018ba71e79a1d
    Author: Matthias Bisping <matthias.bisping@iqser.com>
    Date:   Mon Apr 25 09:45:45 2022 +0200

        refactoring

    commit 0dcd3894154fdf34bd3ba4ef816362434474f472
    Author: Matthias Bisping <matthias.bisping@iqser.com>
    Date:   Mon Apr 25 08:57:21 2022 +0200

        refactoring; removed obsolete extractor-classifier

    commit 1078aa81144f4219149b3fcacdae8b09c4b905c0
    Author: Matthias Bisping <matthias.bisping@iqser.com>
    Date:   Fri Apr 22 17:18:10 2022 +0200

        removed obsolete imports

    commit 71f61fc5fc915da3941cf5ed5d9cc90fccc49031
    Author: Matthias Bisping <matthias.bisping@iqser.com>
    Date:   Fri Apr 22 17:16:25 2022 +0200

        comment changed

    commit b582726cd1de233edb55c5a76c91e99f9dd3bd13
    Author: Matthias Bisping <matthias.bisping@iqser.com>
    Date:   Fri Apr 22 17:12:11 2022 +0200

        refactoring

    commit 8abc9010048078868b235d6793ac6c8b20abb985
    Author: Matthias Bisping <matthias.bisping@iqser.com>
    Date:   Thu Apr 21 21:25:47 2022 +0200

        formatting

    commit 2c87c419fe3185a25c27139e7fcf79f60971ad24
    Author: Matthias Bisping <matthias.bisping@iqser.com>
    Date:   Thu Apr 21 21:24:05 2022 +0200

        formatting

    commit 50b161192db43a84464125c6d79650225e1010d6
    Author: Matthias Bisping <matthias.bisping@iqser.com>
    Date:   Thu Apr 21 21:20:18 2022 +0200

        refactoring

    commit 9a1446cccfa070852a5d9c0bdbc36037b82541fc
    Author: Matthias Bisping <matthias.bisping@iqser.com>
    Date:   Thu Apr 21 21:04:57 2022 +0200

        refactoring

    commit 6c10b55ff8e61412cb2fe5a5625e660ecaf1d7d1
    Author: Matthias Bisping <matthias.bisping@iqser.com>
    Date:   Thu Apr 21 19:48:05 2022 +0200

        refactoring

    commit 72e785e3e31c132ab352119e9921725f91fac9e2
    Author: Matthias Bisping <matthias.bisping@iqser.com>
    Date:   Thu Apr 21 19:43:39 2022 +0200

        refactoring

    commit f036ee55e6747daf31e3929bdc2d93dc5f2a56ca
    Author: Matthias Bisping <matthias.bisping@iqser.com>
    Date:   Wed Apr 20 18:30:41 2022 +0200

        refactoring pipeline WIP

commit 120721f5f1a7e910c0c2ebc79dc87c2908794c80
Author: Matthias Bisping <matthias.bisping@iqser.com>
Date:   Wed Apr 20 15:39:58 2022 +0200

    rm debug ls

commit 81226d4f8599af0db0e9718fbb1789cfad91a855
Author: Matthias Bisping <matthias.bisping@iqser.com>
Date:   Wed Apr 20 15:28:27 2022 +0200

    no compose down

commit 943f7799d49b6a6b0fed985a76ed4fe725dfaeef
Author: Matthias Bisping <matthias.bisping@iqser.com>
Date:   Wed Apr 20 15:22:17 2022 +0200

    coverage combine

commit d4cd96607157ea414db417cfd7133f56cb56afe1
Author: Matthias Bisping <matthias.bisping@iqser.com>
Date:   Wed Apr 20 14:43:09 2022 +0200

    model builder path in mlruns adjusted

commit 5b90bb47c3421feb6123c179eb68d1125d58ff1e
Author: Matthias Bisping <matthias.bisping@iqser.com>
Date:   Wed Apr 20 10:56:58 2022 +0200

    dvc pull in test running script

commit a935cacf2305a4a78a15ff571f368962f4538369
Author: Matthias Bisping <matthias.bisping@iqser.com>
Date:   Wed Apr 20 10:50:36 2022 +0200

    no clean working dir

commit ba09df7884485b8ab8efbf42a8058de9af60c75c
Author: Matthias Bisping <matthias.bisping@iqser.com>
Date:   Wed Apr 20 10:43:22 2022 +0200

    debug ls

commit 71263a9983dbfe2060ef5b74de7cc2cbbad43416
Author: Matthias Bisping <matthias.bisping@iqser.com>
Date:   Wed Apr 20 09:11:03 2022 +0200

    debug ls

commit 41fbadc331e65e4ffe6d053e2d925e5e0543d8b7
Author: Matthias Bisping <matthias.bisping@iqser.com>
Date:   Tue Apr 19 20:08:08 2022 +0200

    debug echo

commit bb19698d640b3a99ea404e5b4b06d719a9bfe9e9
Author: Matthias Bisping <matthias.bisping@iqser.com>
Date:   Tue Apr 19 20:01:59 2022 +0200

    skip server predict test

commit 5094015a87fc0976c9d3ff5d1f4c6fdbd96b7eae
Author: Matthias Bisping <matthias.bisping@iqser.com>
Date:   Tue Apr 19 19:05:50 2022 +0200

    sonar stage after build stage

... and 253 more commits
2022-04-25 12:25:41 +02:00

180 lines
5.0 KiB
Python

import atexit
import io
from functools import partial, lru_cache
from itertools import chain, starmap, filterfalse
from operator import itemgetter
from typing import List
import fitz
from PIL import Image
from funcy import rcompose, merge, pluck, curry, compose
from image_prediction.image_extractor.extractor import ImageExtractor, ImageMetadataPair
from image_prediction.info import Info
from image_prediction.stitching.stitching import stitch_pairs
from image_prediction.stitching.utils import validate_box_coords, validate_box_size
from image_prediction.utils.generic import lift
class ParsablePDFImageExtractor(ImageExtractor):
def __init__(self, verbose=False, tolerance=0):
"""
Args:
verbose: Whether to show progressbar
tolerance: The tolerance in pixels for the distance images beyond which they will not be stitched together
"""
self.doc: fitz.fitz.Document = None
self.verbose = verbose
self.tolerance = tolerance
def extract(self, pdf: bytes, page_range: range = None):
self.doc = fitz.Document(stream=pdf)
pages = extract_pages(self.doc, page_range) if page_range else self.doc
image_metadata_pairs = chain.from_iterable(map(self.__process_images_on_page, pages))
yield from image_metadata_pairs
def __process_images_on_page(self, page: fitz.fitz.Page):
images = get_images_on_page(self.doc, page)
metadata = get_metadata_for_images_on_page(self.doc, page)
clear_caches()
image_metadata_pairs = starmap(ImageMetadataPair, filter(all, zip(images, metadata)))
image_metadata_pairs = stitch_pairs(list(image_metadata_pairs), tolerance=self.tolerance)
yield from image_metadata_pairs
def extract_pages(doc, page_range):
page_range = range(page_range.start + 1, page_range.stop + 1)
pages = map(doc.load_page, page_range)
yield from pages
@lru_cache(maxsize=None)
def get_images_on_page(doc, page: fitz.Page):
image_infos = get_image_infos(page)
xrefs = map(itemgetter("xref"), image_infos)
images = map(partial(xref_to_image, doc), xrefs)
yield from images
def get_metadata_for_images_on_page(doc, page: fitz.Page):
metadata = map(get_image_metadata, get_image_infos(page))
metadata = validate_coords_and_passthrough(metadata)
metadata = filter_out_tiny_images(metadata)
metadata = validate_size_and_passthrough(metadata)
metadata = add_page_metadata(page, metadata)
metadata = add_alpha_channel_info(doc, page, metadata)
yield from metadata
@lru_cache(maxsize=None)
def get_image_infos(page: fitz.Page) -> List[dict]:
return page.get_image_info(xrefs=True)
@lru_cache(maxsize=None)
def xref_to_image(doc, xref) -> Image:
maybe_image = load_image_handle_from_xref(doc, xref)
return Image.open(io.BytesIO(maybe_image["image"])) if maybe_image else None
def get_image_metadata(image_info):
x1, y1, x2, y2 = map(rounder, image_info["bbox"])
width = abs(x2 - x1)
height = abs(y2 - y1)
return {
Info.WIDTH: width,
Info.HEIGHT: height,
Info.X1: x1,
Info.X2: x2,
Info.Y1: y1,
Info.Y2: y2,
}
def validate_coords_and_passthrough(metadata):
yield from map(validate_box_coords, metadata)
def filter_out_tiny_images(metadata):
yield from filterfalse(tiny, metadata)
def validate_size_and_passthrough(metadata):
yield from map(validate_box_size, metadata)
def add_page_metadata(page, metadata):
yield from map(partial(merge, get_page_metadata(page)), metadata)
def add_alpha_channel_info(doc, page, metadata):
page_to_xrefs = compose(curry(pluck)("xref"), get_image_infos)
xref_to_alpha = partial(has_alpha_channel, doc)
page_to_alpha_value_per_image = compose(lift(xref_to_alpha), page_to_xrefs)
alpha_to_dict = compose(dict, lambda a: [(Info.ALPHA, a)])
page_to_alpha_mapping_per_image = compose(lift(alpha_to_dict), page_to_alpha_value_per_image)
metadata = starmap(merge, zip(page_to_alpha_mapping_per_image(page), metadata))
yield from metadata
@lru_cache(maxsize=None)
def load_image_handle_from_xref(doc, xref):
return doc.extract_image(xref)
rounder = rcompose(round, int)
def get_page_metadata(page):
page_width, page_height = map(rounder, page.mediabox_size)
return {
Info.PAGE_WIDTH: page_width,
Info.PAGE_HEIGHT: page_height,
Info.PAGE_IDX: page.number,
}
def has_alpha_channel(doc, xref):
maybe_image = load_image_handle_from_xref(doc, xref)
maybe_smask = maybe_image["smask"] if maybe_image else None
if maybe_smask:
return any([doc.extract_image(maybe_smask) is not None, bool(fitz.Pixmap(doc, maybe_smask).alpha)])
else:
return bool(fitz.Pixmap(doc, xref).alpha)
def tiny(metadata):
return metadata[Info.WIDTH] * metadata[Info.HEIGHT] <= 4
def clear_caches():
get_image_infos.cache_clear()
load_image_handle_from_xref.cache_clear()
get_images_on_page.cache_clear()
xref_to_image.cache_clear()
atexit.register(clear_caches)