From 4eb321c1d1784e048e1b12ee9903e6def690e848 Mon Sep 17 00:00:00 2001 From: maverickstuder Date: Mon, 25 Mar 2024 15:24:46 +0100 Subject: [PATCH] RED-8702: Explore document databases to store entityLog * added tests --- .../tests/EntityLogMongoServiceTest.java | 238 +- .../AbstractPersistenceServerServiceTest.java | 67 +- ...b5d4e11211fc0d7732fd45b78.ENTITY_LOG.json} | 0 ...4dca0aa1aa0ebbfc5cc1462df0.ENTITY_LOG.json | 30537 ++++ ...77170d303bfc6fb82e6a-after.ENTITY_LOG.json | 120408 +++++++++++++++ ...7170d303bfc6fb82e6a-before.ENTITY_LOG.json | 120327 ++++++++++++++ 6 files changed, 271557 insertions(+), 20 deletions(-) rename persistence-service-v1/persistence-service-server-v1/src/test/resources/files/entity-log/{sample.ENTITY_LOG.json => 6f2a9d4b5d4e11211fc0d7732fd45b78.ENTITY_LOG.json} (100%) create mode 100644 persistence-service-v1/persistence-service-server-v1/src/test/resources/files/entity-log/b2cbdd4dca0aa1aa0ebbfc5cc1462df0.ENTITY_LOG.json create mode 100644 persistence-service-v1/persistence-service-server-v1/src/test/resources/files/entity-log/c3b23116f2d277170d303bfc6fb82e6a-after.ENTITY_LOG.json create mode 100644 persistence-service-v1/persistence-service-server-v1/src/test/resources/files/entity-log/c3b23116f2d277170d303bfc6fb82e6a-before.ENTITY_LOG.json diff --git a/persistence-service-v1/persistence-service-server-v1/src/test/java/com/iqser/red/service/peristence/v1/server/integration/tests/EntityLogMongoServiceTest.java b/persistence-service-v1/persistence-service-server-v1/src/test/java/com/iqser/red/service/peristence/v1/server/integration/tests/EntityLogMongoServiceTest.java index cebe87fa9..ac72f3129 100644 --- a/persistence-service-v1/persistence-service-server-v1/src/test/java/com/iqser/red/service/peristence/v1/server/integration/tests/EntityLogMongoServiceTest.java +++ b/persistence-service-v1/persistence-service-server-v1/src/test/java/com/iqser/red/service/peristence/v1/server/integration/tests/EntityLogMongoServiceTest.java @@ -1,6 +1,11 @@ -package com.iqser.red.service.persistence.server.integration.tests; +package com.iqser.red.service.peristence.v1.server.integration.tests; + +import static org.junit.jupiter.api.Assertions.assertEquals; +import static org.junit.jupiter.api.Assertions.assertTrue; + +import java.util.List; +import java.util.Optional; -import org.junit.jupiter.api.Disabled; import org.junit.jupiter.api.Test; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.core.io.ClassPathResource; @@ -10,32 +15,245 @@ import com.fasterxml.jackson.datatype.jsr310.JavaTimeModule; import com.iqser.red.service.peristence.v1.server.integration.utils.AbstractPersistenceServerServiceTest; import com.iqser.red.service.persistence.management.v1.processor.service.mongo.EntityLogMongoService; import com.iqser.red.service.persistence.service.v1.api.shared.model.analysislog.entitylog.EntityLog; +import com.iqser.red.service.persistence.service.v1.api.shared.model.analysislog.entitylog.EntityLogEntry; +import com.knecon.fforesight.tenantcommons.TenantContext; import lombok.SneakyThrows; public class EntityLogMongoServiceTest extends AbstractPersistenceServerServiceTest { - @Autowired private EntityLogMongoService entityLogMongoService; - private final String ENTITY_LOG = "sample.ENTITY_LOG.json"; + private final String ENTITY_LOG1 = "files/entity-log/b2cbdd4dca0aa1aa0ebbfc5cc1462df0.ENTITY_LOG.json"; + private final String ENTITY_LOG2 = "files/entity-log/6f2a9d4b5d4e11211fc0d7732fd45b78.ENTITY_LOG.json"; + private final String ENTITY_LOG3_BEFORE = "files/entity-log/c3b23116f2d277170d303bfc6fb82e6a-before.ENTITY_LOG.json"; + private final String ENTITY_LOG3_AFTER = "files/entity-log/c3b23116f2d277170d303bfc6fb82e6a-after.ENTITY_LOG.json"; + + private static final String TEST_DOSSIER_ID = "91ce8e90-9aec-473c-b8c3-cbe16443ad34"; + private static final String TEST_FILE1_ID = "b2cbdd4dca0aa1aa0ebbfc5cc1462df0"; + private static final String TEST_FILE2_ID = "6f2a9d4b5d4e11211fc0d7732fd45b78"; + private static final String TEST_FILE3_ID = "c3b23116f2d277170d303bfc6fb82e6a"; - private static final String TEST_DOSSIER_ID = "6f2a9d4b5d4e11211fc0d7732fd45b78"; - private static final String TEST_FILE_ID = "b2cbdd4dca0aa1aa0ebbfc5cc1462df0"; @Test @SneakyThrows - @Disabled - public void testInsertEntityLogDocument() { + public void testMultiTenantInserts() { - var file = new ClassPathResource(String.format(ENTITY_LOG)); + var file = new ClassPathResource(String.format(ENTITY_LOG1)); + ObjectMapper objectMapper = new ObjectMapper(); + objectMapper.registerModule(new JavaTimeModule()); + + EntityLog entityLogToStore = objectMapper.readValue(file.getInputStream(), EntityLog.class); + + entityLogMongoService.insertEntityLog(TEST_DOSSIER_ID, TEST_FILE1_ID, entityLogToStore); + + var optionalEntityLog = entityLogMongoService.findEntityLogByDossierIdAndFileId(TEST_DOSSIER_ID, TEST_FILE1_ID); + assertTrue(optionalEntityLog.isPresent()); + + EntityLog entityLogFromStorage = optionalEntityLog.get(); + + assertEquals(entityLogFromStorage, entityLogToStore); + + TenantContext.setTenantId("redaction2"); + + optionalEntityLog = entityLogMongoService.findEntityLogByDossierIdAndFileId(TEST_DOSSIER_ID, TEST_FILE1_ID); + assertTrue(optionalEntityLog.isEmpty()); + + file = new ClassPathResource(String.format(ENTITY_LOG2)); + entityLogToStore = objectMapper.readValue(file.getInputStream(), EntityLog.class); + + entityLogMongoService.insertEntityLog(TEST_DOSSIER_ID, TEST_FILE2_ID, entityLogToStore); + + optionalEntityLog = entityLogMongoService.findEntityLogByDossierIdAndFileId(TEST_DOSSIER_ID, TEST_FILE2_ID); + assertTrue(optionalEntityLog.isPresent()); + + entityLogFromStorage = optionalEntityLog.get(); + + assertEquals(entityLogFromStorage, entityLogToStore); + + TenantContext.setTenantId("redaction"); + + optionalEntityLog = entityLogMongoService.findEntityLogByDossierIdAndFileId(TEST_DOSSIER_ID, TEST_FILE2_ID); + assertTrue(optionalEntityLog.isEmpty()); + } + + + @Test + @SneakyThrows + public void testInsertAndDeleteEntityLogDocument() { + + var file = new ClassPathResource(String.format(ENTITY_LOG1)); + ObjectMapper objectMapper = new ObjectMapper(); + objectMapper.registerModule(new JavaTimeModule()); + + EntityLog entityLogToStore = objectMapper.readValue(file.getInputStream(), EntityLog.class); + + entityLogMongoService.insertEntityLog(TEST_DOSSIER_ID, TEST_FILE1_ID, entityLogToStore); + + var optionalEntityLog = entityLogMongoService.findEntityLogByDossierIdAndFileId(TEST_DOSSIER_ID, TEST_FILE1_ID); + assertTrue(optionalEntityLog.isPresent()); + + EntityLog entityLogFromStorage = optionalEntityLog.get(); + + assertEquals(entityLogFromStorage, entityLogToStore); + + entityLogMongoService.deleteEntityLog(TEST_DOSSIER_ID, TEST_FILE1_ID); + + optionalEntityLog = entityLogMongoService.findEntityLogByDossierIdAndFileId(TEST_DOSSIER_ID, TEST_FILE1_ID); + assertTrue(optionalEntityLog.isEmpty()); + } + + + @Test + @SneakyThrows + public void testFindAndUpdateEntityLogDocument() { + + var file = new ClassPathResource(ENTITY_LOG3_BEFORE); ObjectMapper objectMapper = new ObjectMapper(); objectMapper.registerModule(new JavaTimeModule()); EntityLog entityLog = objectMapper.readValue(file.getInputStream(), EntityLog.class); - entityLogMongoService.insertEntityLog(TEST_DOSSIER_ID, TEST_FILE_ID, entityLog); + entityLogMongoService.insertEntityLog(TEST_DOSSIER_ID, TEST_FILE3_ID, entityLog); + + Optional found = entityLogMongoService.findEntityLogByDossierIdAndFileId(TEST_DOSSIER_ID, TEST_FILE3_ID); + assertTrue(found.isPresent()); + assertEquals(found.get().getEntityLogEntry().size(), 1706); + assertEquals(entityLogMongoService.findLatestAnalysisNumber(TEST_DOSSIER_ID, TEST_FILE3_ID) + .orElse(-1), 8); + + var latest = entityLogMongoService.findLatestAnalysisNumber(TEST_DOSSIER_ID, TEST_FILE3_ID) + .orElseThrow(); + var latestChangedEntries = entityLogMongoService.findAllEntityLogEntriesByAnalysisNumber(TEST_DOSSIER_ID, TEST_FILE3_ID, latest); + assertEquals(latestChangedEntries.size(), 490); + + var manuallyChangedEntries = entityLogMongoService.findAllEntityLogEntriesWithManualChanges(TEST_DOSSIER_ID, TEST_FILE3_ID); + assertEquals(manuallyChangedEntries.size(), 1014); + + String NEW_ENTITY_LOG_ENTRY = """ + { + "id": "05240998f2e657d739d59d220094702a", + "type": "CBI_author", + "entryType": "ENTITY", + "state": "REMOVED", + "value": "Amato", + "reason": "Author found", + "matchedRule": "CBI.0.0", + "legalBasis": "Article 39(e)(3) of Regulation (EC) No 178/2002", + "imported": false, + "containingNodeId": [ + 1, + 0 + ], + "closestHeadline": "", + "section": "[1, 0]: Paragraph: Almond R.H. Almond Richard", + "color": null, + "positions": [ + { + "rectangle": [ + 56.8, + 639.3, + 32.59199, + 12.642 + ], + "pageNumber": 2 + } + ], + "textBefore": "S. Amarasekare Amarasingham ", + "textAfter": " Amato S.L Amato", + "startOffset": 5137, + "endOffset": 5142, + "imageHasTransparency": false, + "dictionaryEntry": true, + "dossierDictionaryEntry": false, + "excluded": false, + "changes": [ + { + "analysisNumber": 1, + "type": "ADDED", + "dateTime": "2024-03-13T08:44:54.811245839Z" + }, + { + "analysisNumber": 3, + "type": "REMOVED", + "dateTime": "2024-03-13T08:47:11.339124572Z" + }, + { + "analysisNumber": 4, + "type": "REMOVED", + "dateTime": "2024-03-13T08:47:19.694336707Z" + }, + { + "analysisNumber": 5, + "type": "REMOVED", + "dateTime": "2024-03-13T08:48:21.670287664Z" + }, + { + "analysisNumber": 6, + "type": "REMOVED", + "dateTime": "2024-03-13T08:58:41.082712591Z" + }, + { + "analysisNumber": 7, + "type": "REMOVED", + "dateTime": "2024-03-13T08:59:31.444615299Z" + }, + { + "analysisNumber": 8, + "type": "REMOVED", + "dateTime": "2024-03-13T09:05:22.006293189Z" + } + ], + "manualChanges": [], + "engines": [ + "DICTIONARY" + ], + "reference": [], + "importedRedactionIntersections": [], + "numberOfComments": 0 + } + """; + + EntityLogEntry entityLogEntry = objectMapper.readValue(NEW_ENTITY_LOG_ENTRY, EntityLogEntry.class); + + entityLogMongoService.insertEntityLogEntries(TEST_DOSSIER_ID, TEST_FILE3_ID, List.of(entityLogEntry)); + + found = entityLogMongoService.findEntityLogByDossierIdAndFileId(TEST_DOSSIER_ID, TEST_FILE3_ID); + assertTrue(found.isPresent()); + assertEquals(found.get().getEntityLogEntry().size(), 1707); } + + + @Test + @SneakyThrows + public void testUpdateEntityLogDocumentByOverride() { + + var file = new ClassPathResource(ENTITY_LOG3_BEFORE); + ObjectMapper objectMapper = new ObjectMapper(); + objectMapper.registerModule(new JavaTimeModule()); + + EntityLog entityLog = objectMapper.readValue(file.getInputStream(), EntityLog.class); + + entityLogMongoService.insertEntityLog(TEST_DOSSIER_ID, TEST_FILE3_ID, entityLog); + + Optional found = entityLogMongoService.findEntityLogByDossierIdAndFileId(TEST_DOSSIER_ID, TEST_FILE3_ID); + assertTrue(found.isPresent()); + assertEquals(found.get().getEntityLogEntry().size(), 1706); + + file = new ClassPathResource(ENTITY_LOG3_AFTER); + + entityLog = objectMapper.readValue(file.getInputStream(), EntityLog.class); + entityLog.setAnalysisNumber(entityLog.getAnalysisNumber() + 1); + + entityLogMongoService.saveEntityLog(TEST_DOSSIER_ID, TEST_FILE3_ID, entityLog); + + found = entityLogMongoService.findEntityLogByDossierIdAndFileId(TEST_DOSSIER_ID, TEST_FILE3_ID); + assertTrue(found.isPresent()); + assertEquals(found.get().getEntityLogEntry().size(), 1707); + assertEquals(found.get().getAnalysisNumber(), 9); + + } + } diff --git a/persistence-service-v1/persistence-service-server-v1/src/test/java/com/iqser/red/service/peristence/v1/server/integration/utils/AbstractPersistenceServerServiceTest.java b/persistence-service-v1/persistence-service-server-v1/src/test/java/com/iqser/red/service/peristence/v1/server/integration/utils/AbstractPersistenceServerServiceTest.java index 4eac6b3be..e926f6db1 100644 --- a/persistence-service-v1/persistence-service-server-v1/src/test/java/com/iqser/red/service/peristence/v1/server/integration/utils/AbstractPersistenceServerServiceTest.java +++ b/persistence-service-v1/persistence-service-server-v1/src/test/java/com/iqser/red/service/peristence/v1/server/integration/utils/AbstractPersistenceServerServiceTest.java @@ -235,11 +235,11 @@ public abstract class AbstractPersistenceServerServiceTest { @MockBean private UsersClient usersClient; @Autowired - private EncryptionDecryptionService encryptionDecryptionService; + protected EncryptionDecryptionService encryptionDecryptionService; @Autowired - private TenantCreatedListener tenantCreatedListener; + protected TenantCreatedListener tenantCreatedListener; @Autowired - private MongoTenantCreatedListener mongoTenantCreatedListener; + protected MongoTenantCreatedListener mongoTenantCreatedListener; private static String[] getAllRoles() { @@ -273,7 +273,7 @@ public abstract class AbstractPersistenceServerServiceTest { @BeforeEach public void setupOptimize() { - createDefaultTenant(); + createTenants(); TenantContext.setTenantId("redaction"); @@ -322,7 +322,7 @@ public abstract class AbstractPersistenceServerServiceTest { } - private void createDefaultTenant() { + private void createTenants() { var postgreSQLContainerMaster = SpringPostgreSQLTestContainer.getInstance().withDatabaseName("integration-tests-db-master").withUsername("sa").withPassword("sa"); var mongoDbContainer = MongoDBTestContainer.getInstance(); @@ -372,12 +372,58 @@ public abstract class AbstractPersistenceServerServiceTest { .database(MONGO_DATABASE) .build()); + + var redactionTenant2 = new TenantResponse(); + redactionTenant2.setTenantId("redaction2"); + redactionTenant2.setGuid("redaction2"); + redactionTenant2.setDisplayName("redaction2"); + redactionTenant2.setAuthDetails(new AuthDetails()); + redactionTenant2.setDatabaseConnection(DatabaseConnection.builder() + .driver("postgresql") + .host(postgreSQLContainerMaster.getHost()) + .port(port) + .database("integration-tests-db-master") + .schema("public") + .username("sa") + .password(encryptionDecryptionService.encrypt("sa")) + .build()); + + redactionTenant2.setSearchConnection(SearchConnection.builder() + .hosts(Set.of("elasticsearchHost")) + .port(9200) + .scheme("https") + .username("elastic") + .numberOfShards("1") + .numberOfReplicas("5") + .build()); + + redactionTenant2.setS3StorageConnection(S3StorageConnection.builder() + .key("key") + .secret("secret") + .signerType("signerType") + .bucketName("bucketName") + .region("eu") + .endpoint("endpoint") + .build()); + + redactionTenant2.setMongoDBConnection(MongoDBConnection.builder() + .host(mongoDbContainer.getHost()) + .port(String.valueOf(mongoDbContainer.getFirstMappedPort())) + .username(MONGO_USERNAME) + .password(encryptionDecryptionService.encrypt(MONGO_PASSWORD)) + .database("redaction2") + .build()); + + when(tenantsClient.getTenant("redaction")).thenReturn(redactionTenant); - when(tenantsClient.getTenants()).thenReturn(List.of(redactionTenant)); + when(tenantsClient.getTenant("redaction2")).thenReturn(redactionTenant2); + when(tenantsClient.getTenants()).thenReturn(List.of(redactionTenant, redactionTenant2)); try { tenantCreatedListener.createTenant(new TenantCreatedEvent("redaction")); mongoTenantCreatedListener.createTenant(new MongoTenantCreatedEvent("redaction")); + tenantCreatedListener.createTenant(new TenantCreatedEvent("redaction2")); + mongoTenantCreatedListener.createTenant(new MongoTenantCreatedEvent("redaction2")); } catch (Exception e) { e.printStackTrace(); @@ -475,7 +521,8 @@ public abstract class AbstractPersistenceServerServiceTest { var mongoInstance = MongoDBTestContainer.getInstance(); mongoInstance.start(); - createMongoDBDatabase(mongoInstance); + createMongoDBDatabase(mongoInstance, "redaction"); + createMongoDBDatabase(mongoInstance, "redaction2"); log.info("Hosts are - Redis: {}, Postgres: {}, MongoDB: {}", redisContainer.getHost(), postgreSQLContainerMaster.getHost(), mongoInstance.getHost()); @@ -493,19 +540,19 @@ public abstract class AbstractPersistenceServerServiceTest { } - private static void createMongoDBDatabase(MongoDBTestContainer mongoDBTestContainer) { + private static void createMongoDBDatabase(MongoDBTestContainer mongoDBTestContainer, String databaseName) { try (MongoClient mongoClient = MongoClients.create(String.format("mongodb://%s:%s@%s:%s/", MONGO_USERNAME, MONGO_PASSWORD, mongoDBTestContainer.getHost(), mongoDBTestContainer.getFirstMappedPort()))) { - MongoDatabase database = mongoClient.getDatabase(MONGO_DATABASE); + MongoDatabase database = mongoClient.getDatabase(databaseName); BsonDocument createUserCommand = new BsonDocument(); createUserCommand.append("createUser", new BsonString(MONGO_USERNAME)); createUserCommand.append("pwd", new BsonString(MONGO_PASSWORD)); BsonArray roles = new BsonArray(); - roles.add(new BsonDocument("role", new BsonString("dbOwner")).append("db", new BsonString(MONGO_DATABASE))); + roles.add(new BsonDocument("role", new BsonString("dbOwner")).append("db", new BsonString(databaseName))); createUserCommand.append("roles", roles); try { diff --git a/persistence-service-v1/persistence-service-server-v1/src/test/resources/files/entity-log/sample.ENTITY_LOG.json b/persistence-service-v1/persistence-service-server-v1/src/test/resources/files/entity-log/6f2a9d4b5d4e11211fc0d7732fd45b78.ENTITY_LOG.json similarity index 100% rename from persistence-service-v1/persistence-service-server-v1/src/test/resources/files/entity-log/sample.ENTITY_LOG.json rename to persistence-service-v1/persistence-service-server-v1/src/test/resources/files/entity-log/6f2a9d4b5d4e11211fc0d7732fd45b78.ENTITY_LOG.json diff --git a/persistence-service-v1/persistence-service-server-v1/src/test/resources/files/entity-log/b2cbdd4dca0aa1aa0ebbfc5cc1462df0.ENTITY_LOG.json b/persistence-service-v1/persistence-service-server-v1/src/test/resources/files/entity-log/b2cbdd4dca0aa1aa0ebbfc5cc1462df0.ENTITY_LOG.json new file mode 100644 index 000000000..f0cb5c8ad --- /dev/null +++ b/persistence-service-v1/persistence-service-server-v1/src/test/resources/files/entity-log/b2cbdd4dca0aa1aa0ebbfc5cc1462df0.ENTITY_LOG.json @@ -0,0 +1,30537 @@ +{ + "analysisVersion": 1, + "analysisNumber": 5, + "entityLogEntry": [ + { + "id": "09a6573e608e19a22452222255d15bad", + "type": "CBI_address", + "entryType": "RECOMMENDATION", + "state": "SKIPPED", + "value": "Analytik GmbH, Kupferstraße 6, 04827 Machern OT Gerichshain, Germany", + "reason": "", + "matchedRule": "", + "legalBasis": "", + "imported": false, + "containingNodeId": [ + 350, + 2, + 1 + ], + "closestHeadline": "A 2.2.1.6.13 Analytical method 13 - fenpropidin residues in sucrose solution ", + "section": "[350, 2, 1]: Paragraph: Report: Ruhland S. (2018),", + "color": null, + "positions": [ + { + "rectangle": [ + 199.73, + 158.10005, + 337.3089, + 11.017679 + ], + "pageNumber": 131 + } + ], + "textBefore": "biologische und chemische, ", + "textAfter": " (Syngenta File No.", + "startOffset": 275281, + "endOffset": 275349, + "imageHasTransparency": false, + "dictionaryEntry": false, + "dossierDictionaryEntry": false, + "excluded": false, + "changes": [ + { + "analysisNumber": 1, + "type": "ADDED", + "dateTime": "2024-03-08T11:23:04.067051365Z" + } + ], + "manualChanges": [], + "engines": [ + "NER" + ], + "reference": [], + "importedRedactionIntersections": [], + "numberOfComments": 0 + }, + { + "id": "396e8a2f8ac786489e4f7ec09b53094b", + "type": "CBI_author", + "entryType": "RECOMMENDATION", + "state": "SKIPPED", + "value": "Zampakou M.,", + "reason": "", + "matchedRule": "", + "legalBasis": "", + "imported": false, + "containingNodeId": [ + 8, + 1, + 5 + ], + "closestHeadline": "Table 5.2-1: Methods suitable for the determination of the active substances Azoxystrobin and Fenpropidin in plant protection product A23317A ", + "section": "[8, 1, 5]: Table_cell: Zampakou M., 2020", + "color": null, + "positions": [ + { + "rectangle": [ + 422.59, + 687.86, + 59.28, + 10.526819 + ], + "pageNumber": 8 + } + ], + "textBefore": "", + "textAfter": " 2020", + "startOffset": 14379, + "endOffset": 14391, + "imageHasTransparency": false, + "dictionaryEntry": false, + "dossierDictionaryEntry": false, + "excluded": false, + "changes": [ + { + "analysisNumber": 1, + "type": "ADDED", + "dateTime": "2024-03-08T11:23:04.067051365Z" + } + ], + "manualChanges": [], + "engines": [ + "NER" + ], + "reference": [], + "importedRedactionIntersections": [], + "numberOfComments": 0 + }, + { + "id": "0cdc7dd2204645819844c9416a0ec02e", + "type": "published_information", + "entryType": "HINT", + "state": "SKIPPED", + "value": "Mass Spectrometry", + "reason": "", + "matchedRule": "", + "legalBasis": "", + "imported": false, + "containingNodeId": [ + 339, + 1 + ], + "closestHeadline": "Materials and methods ", + "section": "[339, 1]: Paragraph: Water samples are analysed", + "color": null, + "positions": [ + { + "rectangle": [ + 423.13248, + 329.13, + 85.97949, + 11.017679 + ], + "pageNumber": 128 + } + ], + "textBefore": "(LC) coupled with ", + "textAfter": " (MS). 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