RED-8339: Updated OpenApi Specs
This commit is contained in:
Ali Oezyetimoglu
parent
9660ac765b
commit
f3a7d40ff9
@ -1,62 +0,0 @@
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//package com.iqser.red.service.peristence.v1.server.integration.tests;
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//
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//import static com.mongodb.assertions.Assertions.assertNotNull;
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//import static com.mongodb.assertions.Assertions.assertTrue;
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//import static org.junit.jupiter.api.Assertions.assertEquals;
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//
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//import java.util.List;
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//import java.util.Optional;
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//
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//import org.junit.jupiter.api.Test;
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//import org.springframework.core.io.ClassPathResource;
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//
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//import com.fasterxml.jackson.databind.ObjectMapper;
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//import com.fasterxml.jackson.datatype.jsr310.JavaTimeModule;
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//import com.iqser.red.service.persistence.service.v1.api.shared.mongo.document.ComponentDocument;
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//import com.iqser.red.service.persistence.service.v1.api.shared.mongo.mapper.ComponentLogDocumentMapper;
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//
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//import lombok.SneakyThrows;
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//
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//public class ComponentLogDocumentMapperTest {
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//
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// private final ComponentLogDocumentMapper mapper = ComponentLogDocumentMapper.INSTANCE;
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//
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// private final String COMPONENT_LOG = "files/componentlog/componentLogExample.json";
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// private final String COMPONENT_OVERRIDE = "files/componentlog/componentOverrideExample.json";
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// private static final String TEST_DOSSIER_ID = "91ce8e90-9aec-473c-b8c3-cbe16443ad34";
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// private static final String TEST_FILE_ID = "b2cbdd4dca0aa1aa0ebbfc5cc1462df0";
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//
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//
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// @Test
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// @SneakyThrows
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// public void ComponentOverrideMapper() {
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//
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// var overrideFile = new ClassPathResource(String.format(COMPONENT_OVERRIDE));
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// ObjectMapper objectMapper = new ObjectMapper();
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// objectMapper.registerModule(new JavaTimeModule());
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//
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// ComponentsOverrides componentsOverridesBefore = objectMapper.readValue(overrideFile.getInputStream(), ComponentsOverrides.class);
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//
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// List<ComponentDocument> componentDocument = mapper.toComponentOverrideDocuments(componentsOverridesBefore, TEST_DOSSIER_ID, TEST_FILE_ID);
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//
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// assertEquals(componentDocument.get(0).getDossierId(), TEST_DOSSIER_ID);
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// assertEquals(componentDocument.get(0).getFileId(), TEST_FILE_ID);
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// assertEquals(componentDocument.get(0).getId(), mapper.getComponentId(TEST_DOSSIER_ID, TEST_FILE_ID, componentDocument.get(0).getName()));
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//
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// Optional<ComponentValueDocument> optionalComponentValueDocument = componentDocument.get(0).getOverrideValues()
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// .stream()
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// .findFirst();
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//
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// assertTrue(optionalComponentValueDocument.isPresent());
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// assertNotNull(optionalComponentValueDocument.get().getValueId());
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// assertNotNull(optionalComponentValueDocument.get().getComponentOverrideId());
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//
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// ComponentsOverrides componentsOverridesAfter = mapper.fromComponentOverrideDocument(componentDocument.get(0));
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//
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// assertEquals(mapper.buildComponentOverrideMap(componentDocument.get(0).getName(),
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// componentsOverridesBefore.getComponentOverrides()
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// .get(componentDocument.get(0).getName())), componentsOverridesAfter);
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//
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// }
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//
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//}
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@ -1,266 +0,0 @@
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{
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"analysisNumber": 3,
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"componentRulesVersion": 1,
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"componentLogEntries": [
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{
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"name": "Study_Title",
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"componentValues": [
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{
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"valueId": null,
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"value": "",
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"originalValue": "",
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"valueDescription": "First found value of type or else ''",
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"componentRuleId": "StudyTitle.0.0",
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"componentLogEntityReferences": []
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}
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]
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},
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{
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"name": "Performing_Laboratory",
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"componentValues": [
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{
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"valueId": null,
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"value": "",
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"originalValue": "",
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"valueDescription": "fallback",
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"componentRuleId": "PerformingLaboratory.0.2",
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"componentLogEntityReferences": []
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}
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]
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},
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{
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"name": "Report_Number",
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"componentValues": [
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{
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"valueId": null,
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"value": "",
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"originalValue": "",
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"valueDescription": "First found value of type or else ''",
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"componentRuleId": "ReportNumber.0.0",
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"componentLogEntityReferences": []
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}
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]
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},
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{
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"name": "GLP_Study",
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"componentValues": [
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{
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"valueId": null,
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"value": "No",
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"originalValue": "No",
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"valueDescription": "Yes if present, No if not",
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"componentRuleId": "GLPStudy.1.0",
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"componentLogEntityReferences": []
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}
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]
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},
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{
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"name": "Test_Guidelines_2",
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"componentValues": [
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{
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"valueId": null,
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"value": "",
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"originalValue": "",
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"valueDescription": "Joining all values of type with ', '",
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"componentRuleId": "TestGuideline.2.0",
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"componentLogEntityReferences": []
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}
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]
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},
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{
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"name": "Experimental_Starting_Date",
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"componentValues": [
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{
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"valueId": null,
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"value": "",
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"originalValue": "",
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"valueDescription": "Convert values of type '' to dd/MM/yyyy joined with ', '",
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"componentRuleId": "StartDate.0.0",
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"componentLogEntityReferences": []
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}
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]
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},
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{
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"name": "Experimental_Completion_Date",
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"componentValues": [
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{
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"valueId": null,
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"value": "",
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"originalValue": "",
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"valueDescription": "Convert values of type '' to dd/MM/yyyy joined with ', '",
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"componentRuleId": "CompletionDate.0.0",
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"componentLogEntityReferences": []
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}
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]
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},
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{
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"name": "Certificate_of_Analysis_Batch_Identification",
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"componentValues": [
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{
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"valueId": null,
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"value": "",
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"originalValue": "",
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"valueDescription": "Joining all unique values of type with ', '",
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"componentRuleId": "AnalysisCertificate.0.0",
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"componentLogEntityReferences": []
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}
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]
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},
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{
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"name": "Species",
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"componentValues": [
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{
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"valueId": null,
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"value": "",
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"originalValue": "",
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"valueDescription": "First found value of type or else ''",
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"componentRuleId": "Species.0.0",
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"componentLogEntityReferences": []
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}
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]
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},
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{
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"name": "Strain",
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"componentValues": [
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{
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"valueId": null,
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"value": "",
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"originalValue": "",
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"valueDescription": "First found value of type or else ''",
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"componentRuleId": "Strain.0.0",
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"componentLogEntityReferences": []
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}
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]
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},
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{
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"name": "Doses_mg_per_kg_bw",
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"componentValues": [
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{
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"valueId": null,
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"value": "",
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"originalValue": "",
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"valueDescription": "Joining all values of type with ' '",
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"componentRuleId": "Necropsy.1.0",
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"componentLogEntityReferences": []
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}
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]
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},
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{
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"name": "Mortality_Statement",
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"componentValues": [
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{
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"valueId": null,
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"value": "",
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"originalValue": "",
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"valueDescription": "Joining all values of type with ' '",
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"componentRuleId": "MortalityStatement.0.0",
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"componentLogEntityReferences": []
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}
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]
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},
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{
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"name": "Weight_Behavior_Changes",
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"componentValues": [
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{
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"valueId": null,
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"value": "",
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"originalValue": "",
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"valueDescription": "Joining all values of type with '\n'",
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"componentRuleId": "WeightBehavior.0.0",
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"componentLogEntityReferences": []
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}
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]
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},
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{
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"name": "Necropsy_Findings",
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"componentValues": [
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{
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"valueId": null,
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"value": "",
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"originalValue": "",
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"valueDescription": "Joining all values of type with ' '",
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"componentRuleId": "Necropsy.0.0",
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"componentLogEntityReferences": []
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}
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]
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},
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{
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"name": "Deviation_from_the_Guideline",
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"componentValues": [
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{
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"valueId": null,
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"value": "",
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"originalValue": "",
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"valueDescription": "Joining all values of type with '\n'",
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"componentRuleId": "GuidelineDeviation.0.0",
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"componentLogEntityReferences": []
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}
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]
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},
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{
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"name": "Conclusion_LD50_Greater_than",
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"componentValues": [
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{
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"valueId": null,
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"value": "",
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"originalValue": "",
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"valueDescription": "No entity of type 'ld50_greater' found",
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"componentRuleId": "Conclusion.1.1",
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"componentLogEntityReferences": []
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}
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]
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},
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{
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"name": "Conclusion_LD50_mg_per_kg",
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"componentValues": [
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{
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"valueId": null,
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"value": "",
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"originalValue": "",
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"valueDescription": "Joining all unique values of type with ', '",
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"componentRuleId": "Conclusion.0.0",
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"componentLogEntityReferences": []
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}
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]
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},
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{
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"name": "Conclusion_Minimum_Confidence",
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"componentValues": [
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{
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"valueId": null,
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"value": "",
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"originalValue": "",
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"valueDescription": "Joining all unique values of type with ', '",
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"componentRuleId": "Conclusion.2.0",
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"componentLogEntityReferences": []
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}
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]
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},
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{
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"name": "Conclusion_Maximum_Confidence",
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"componentValues": [
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{
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"valueId": null,
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"value": "",
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"originalValue": "",
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"valueDescription": "Joining all unique values of type with ', '",
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"componentRuleId": "Conclusion.3.0",
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"componentLogEntityReferences": []
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}
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]
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},
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{
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"name": "Study_Conclusion",
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"componentValues": [
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{
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"valueId": null,
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"value": "",
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"originalValue": "",
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"valueDescription": "Joining all values of type with ' '",
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"componentRuleId": "StudyConclusion.0.0",
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"componentLogEntityReferences": []
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}
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]
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}
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]
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}
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@ -1,244 +0,0 @@
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{
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"componentOverrides": [
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{
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"name": "Study_Title",
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"componentValues": [
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{
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"valueId": "1",
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"value": "",
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"valueDescription": "First found value of type or else ''",
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"componentRuleId": "StudyTitle.0.0",
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"componentLogEntityReferences": []
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}
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]
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},
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{
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"name": "Performing_Laboratory",
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"componentValues": [
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{
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"valueId": "2",
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"value": "",
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"valueDescription": "fallback",
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"componentRuleId": "PerformingLaboratory.0.2",
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"componentLogEntityReferences": []
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}
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]
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},
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{
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"name": "Report_Number",
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"componentValues": [
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{
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"valueId": "3",
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"value": "",
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"valueDescription": "First found value of type or else ''",
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"componentRuleId": "ReportNumber.0.0",
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"componentLogEntityReferences": []
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}
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]
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},
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{
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"name": "GLP_Study",
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"componentValues": [
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{
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"valueId": "4",
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"value": "No",
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"valueDescription": "Yes if present, No if not",
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"componentRuleId": "GLPStudy.1.0",
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"componentLogEntityReferences": []
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}
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]
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},
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{
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"name": "Test_Guidelines_2",
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"componentValues": [
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{
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"valueId": "5",
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"value": "",
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"valueDescription": "Joining all values of type with ', '",
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"componentRuleId": "TestGuideline.2.0",
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"componentLogEntityReferences": []
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}
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]
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},
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{
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"name": "Experimental_Starting_Date",
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"componentValues": [
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{
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"valueId": "6",
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"value": "",
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"valueDescription": "Convert values of type '' to dd/MM/yyyy joined with ', '",
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"componentRuleId": "StartDate.0.0",
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"componentLogEntityReferences": []
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}
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]
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},
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{
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"name": "Experimental_Completion_Date",
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"componentValues": [
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{
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"valueId": "7",
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"value": "",
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"valueDescription": "Convert values of type '' to dd/MM/yyyy joined with ', '",
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"componentRuleId": "CompletionDate.0.0",
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"componentLogEntityReferences": []
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}
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]
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},
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{
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"name": "Certificate_of_Analysis_Batch_Identification",
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"componentValues": [
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{
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"valueId": "8",
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"value": "",
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"valueDescription": "Joining all unique values of type with ', '",
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"componentRuleId": "AnalysisCertificate.0.0",
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"componentLogEntityReferences": []
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}
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]
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},
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{
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"name": "Species",
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"componentValues": [
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{
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"valueId": "9",
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"value": "",
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"valueDescription": "First found value of type or else ''",
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"componentRuleId": "Species.0.0",
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"componentLogEntityReferences": []
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}
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]
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},
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{
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"name": "Strain",
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"componentValues": [
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{
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"valueId": "10",
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"value": "",
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"valueDescription": "First found value of type or else ''",
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"componentRuleId": "Strain.0.0",
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"componentLogEntityReferences": []
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}
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]
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},
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{
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"name": "Doses_mg_per_kg_bw",
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"componentValues": [
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{
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"valueId": "11",
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"value": "",
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"valueDescription": "Joining all values of type with ' '",
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"componentRuleId": "Necropsy.1.0",
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"componentLogEntityReferences": []
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}
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]
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},
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{
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"name": "Mortality_Statement",
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"componentValues": [
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{
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"valueId": "12",
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"value": "",
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"valueDescription": "Joining all values of type with ' '",
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"componentRuleId": "MortalityStatement.0.0",
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"componentLogEntityReferences": []
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}
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]
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},
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{
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"name": "Weight_Behavior_Changes",
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"componentValues": [
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{
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"valueId": "13",
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"value": "",
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"valueDescription": "Joining all values of type with '\n'",
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"componentRuleId": "WeightBehavior.0.0",
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"componentLogEntityReferences": []
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}
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]
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},
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{
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"name": "Necropsy_Findings",
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"componentValues": [
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{
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"valueId": "14",
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"value": "",
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"valueDescription": "Joining all values of type with ' '",
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"componentRuleId": "Necropsy.0.0",
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"componentLogEntityReferences": []
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}
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]
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},
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{
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"name": "Deviation_from_the_Guideline",
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"componentValues": [
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{
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"valueId": "15",
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"value": "",
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"valueDescription": "Joining all values of type with '\n'",
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"componentRuleId": "GuidelineDeviation.0.0",
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"componentLogEntityReferences": []
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}
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]
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},
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{
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"name": "Conclusion_LD50_Greater_than",
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"componentValues": [
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{
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"valueId": "16",
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"value": "",
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"valueDescription": "No entity of type 'ld50_greater' found",
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"componentRuleId": "Conclusion.1.1",
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"componentLogEntityReferences": []
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}
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]
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},
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{
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"name": "Conclusion_LD50_mg_per_kg",
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"componentValues": [
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{
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||||
"valueId": "17",
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||||
Loading…
x
Reference in New Issue
Block a user