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README.md
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README.md
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# SETUP
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# Infrastructure to deploy Research Projects
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## 1. module
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The Infrastructure expects to be deployed in the same Pod / local environment as the analysis container and handles all outbound communication.
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```bash
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pip install -e .
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pip install -r requirements.txt
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```
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## Configuration
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## 1. docker image
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A configuration is located in `/config.yaml`. All relevant variables can be configured via exporting environment variables.
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```bash
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docker build -f Dockerfile -t pyinfra .
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```
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| Environment Variable | Default | Description |
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|-------------------------------|--------------------------------|--------------------------------------------------------------------------------|
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| _service_ | | |
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| LOGGING_LEVEL_ROOT | DEBUG | Logging level for service logger |
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| RESPONSE_FILE_EXTENSION | ".NER_ENTITIES.json.gz" | Extension to the file that stores the analyized response on storage |
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| _probing_webserver_ | | |
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| PROBING_WEBSERVER_HOST | "0.0.0.0" | Probe webserver address |
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| PROBING_WEBSERVER_PORT | 8080 | Probe webserver port |
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| PROBING_WEBSERVER_MODE | production | Webserver mode: {development, production} |
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| _rabbitmq_ | | |
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| RABBITMQ_HOST | localhost | RabbitMQ host address |
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| RABBITMQ_PORT | 5672 | RabbitMQ host port |
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| RABBITMQ_USERNAME | user | RabbitMQ username |
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| RABBITMQ_PASSWORD | bitnami | RabbitMQ password |
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| RABBITMQ_HEARTBEAT | 7200 | Controls AMQP heartbeat timeout in seconds |
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| _queues_ | | |
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| REQUEST_QUEUE | request_queue | Requests to service |
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| RESPONSE_QUEUE | response_queue | Responses by service |
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| DEAD_LETTER_QUEUE | dead_letter_queue | Messages that failed to process |
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| _callback_ | | |
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| RETRY | False | Toggles retry behaviour |
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| MAX_ATTEMPTS | 3 | Number of times a message may fail before being published to dead letter queue |
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| ANALYSIS_ENDPOINT | "http://127.0.0.1:5000" | |
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| _storage_ | | |
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| STORAGE_BACKEND | s3 | The type of storage to use {s3, azure} |
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| STORAGE_BUCKET | "pyinfra-test-bucket" | The bucket / container to pull files specified in queue requests from |
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| TARGET_FILE_EXTENSION | ".TEXT.json.gz" | Defines type of file to pull from storage: .TEXT.json.gz or .ORIGIN.pdf.gz |
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| STORAGE_ENDPOINT | "http://127.0.0.1:9000" | |
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| STORAGE_KEY | root | |
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| STORAGE_SECRET | password | |
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| STORAGE_AZURECONNECTIONSTRING | "DefaultEndpointsProtocol=..." | |
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# RUN
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## Development
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## 2. rabbitmq & minio
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### Local Setup
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```bash
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docker-compose up
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```
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You can run the infrastructure either as module via. `src/serve.py` or as Dockercontainer simulating the kubernetes environment
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## 3. module
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1. Install module / build docker image
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```bash
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python src/serve.py
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```
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```bash
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pip install -e .
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pip install -r requirements.txt
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```
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## 3. docker container
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```bash
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docker build -f Dockerfile -t pyinfra .
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```
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```bash
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docker run --net=host pyinfra
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```
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2. Run rabbitmq & minio
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```bash
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docker-compose up
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```
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3. Run module / docker container
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```bash
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python src/serve.py
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```
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```bash
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docker run --net=host pyinfra
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```
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