operations section in config cleaned up

config.yaml

@@ -9,34 +9,35 @@ service:
   # specified in the request
   download_strategy: $DOWNLOAD_STRATEGY|multi
   response_formatter: default  # TODO: write formatter for analysis tasks that pulls metadata content into root of response json
+  # Note: This is not really the right place for this. It should be configured on a per-service basis.
   operations:
     conversion:
       input:
         subdir: ""
         extension: ORIGIN.pdf.gz
-      output: # FIXME
-        subdir: "conversion_new"  # FIXME: currently operation string is sued for output dir
+      output:
+        subdir: "conversion"
         extension: json.gz
     extraction:
       input:
         subdir: ""
         extension: ORIGIN.pdf.gz
-      output: # FIXME
-        subdir: "extraction_new"  # FIXME: currently operation string is sued for output dir
+      output:
+        subdir: "extraction"
         extension: json.gz
     table_parsing:
       input:
-        subdir: "conversion_new"
+        subdir: "conversion"
         extension: json.gz
-      output: # FIXME
-        subdir: "table_new"  # FIXME: currently operation string is sued for output dir
+      output:
+        subdir: "table_new"
         extension: json.gz
     default:
       input:
         subdir: ""
         extension: IN.gz
-      output: # FIXME
-        subdir: ""  # FIXME: currently operation string is sued for output dir
+      output:
+        subdir: ""
         extension: out.gz
 
 probing_webserver:

test/integration_tests/serve_test.py

@@ -160,7 +160,7 @@ def build_filepath(object_descriptor, page):
     object_name = object_descriptor["object_name"]
     parts = object_name.split("/")
     path = "/".join(parts)
-    path = re.sub("id:\d", f"id:{page}", path)
+    path = re.sub(r"id:\d", f"id:{page}", path)
 
     return path