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RED-824: Add author recommendations based on vertebrate study tables

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deiflaender 2020-12-03 11:52:09 +01:00
parent 9b7deca3db
commit 608ea4bbcc
17 changed files with 353 additions and 120 deletions
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1
redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/RedactionLogEntry.java
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@ -22,6 +22,7 @@ public class RedactionLogEntry {
private String legalBasis; private String legalBasis;
private boolean redacted; private boolean redacted;
private boolean isHint; private boolean isHint;
private boolean isRecommendation;
private String section; private String section;
private float[] color; private float[] color;

2
redaction-service-v1/redaction-service-server-v1/pom.xml
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@ -20,7 +20,7 @@
<dependency> <dependency>
<groupId>com.iqser.red.service</groupId> <groupId>com.iqser.red.service</groupId>
<artifactId>configuration-service-api-v1</artifactId> <artifactId>configuration-service-api-v1</artifactId>
<version>1.3.5</version> <version>1.3.7</version>
</dependency> </dependency>
<dependency> <dependency>
<groupId>org.drools</groupId> <groupId>org.drools</groupId>

5
redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/model/DictionaryModel.java
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@ -1,11 +1,11 @@
package com.iqser.red.service.redaction.v1.server.redaction.model; package com.iqser.red.service.redaction.v1.server.redaction.model;
import java.util.Set;
import lombok.AllArgsConstructor; import lombok.AllArgsConstructor;
import lombok.Data; import lombok.Data;
import java.util.Set;
@Data @Data
@AllArgsConstructor @AllArgsConstructor
public class DictionaryModel { public class DictionaryModel {
@ -15,6 +15,7 @@ public class DictionaryModel {
private float[] color; private float[] color;
private boolean caseInsensitive; private boolean caseInsensitive;
private boolean hint; private boolean hint;
private boolean recommendation;
private Set<String> entries; private Set<String> entries;
private Set<String> localEntries; private Set<String> localEntries;

50
redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/model/Section.java
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@ -1,15 +1,19 @@
package com.iqser.red.service.redaction.v1.server.redaction.model; package com.iqser.red.service.redaction.v1.server.redaction.model;
import static com.iqser.red.service.redaction.v1.server.redaction.service.DictionaryService.RECOMMENDATION_PREFIX;
import java.util.ArrayList; import java.util.ArrayList;
import java.util.HashSet; import java.util.HashSet;
import java.util.List; import java.util.List;
import java.util.Map; import java.util.Map;
import java.util.Set; import java.util.Set;
import java.util.regex.Matcher;
import java.util.regex.Pattern; import java.util.regex.Pattern;
import org.apache.commons.lang3.StringUtils; import org.apache.commons.lang3.StringUtils;
import com.iqser.red.service.redaction.v1.server.redaction.service.DictionaryService; import com.iqser.red.service.redaction.v1.server.redaction.service.DictionaryService;
import com.iqser.red.service.redaction.v1.server.redaction.utils.Patterns;
import lombok.Builder; import lombok.Builder;
import lombok.Data; import lombok.Data;
@ -62,8 +66,11 @@ public class Section {
public void redact(String type, int ruleNumber, String reason, String legalBasis) { public void redact(String type, int ruleNumber, String reason, String legalBasis) {
boolean hasRecommendactionDictionary = dictionaryService.hasRecommendationDictionary(type);
entities.forEach(entity -> { entities.forEach(entity -> {
if (entity.getType().equals(type)) { if (entity.getType().equals(type) || hasRecommendactionDictionary && entity.getType()
.equals(RECOMMENDATION_PREFIX + type)) {
entity.setRedaction(true); entity.setRedaction(true);
entity.setMatchedRule(ruleNumber); entity.setMatchedRule(ruleNumber);
entity.setRedactionReason(reason); entity.setRedactionReason(reason);
@ -75,8 +82,11 @@ public class Section {
public void redactNot(String type, int ruleNumber, String reason) { public void redactNot(String type, int ruleNumber, String reason) {
boolean hasRecommendactionDictionary = dictionaryService.hasRecommendationDictionary(type);
entities.forEach(entity -> { entities.forEach(entity -> {
if (entity.getType().equals(type)) { if (entity.getType().equals(type) || hasRecommendactionDictionary && entity.getType()
.equals(RECOMMENDATION_PREFIX + type)) {
entity.setRedaction(false); entity.setRedaction(false);
entity.setMatchedRule(ruleNumber); entity.setMatchedRule(ruleNumber);
entity.setRedactionReason(reason); entity.setRedactionReason(reason);
@ -247,24 +257,26 @@ public class Section {
public void highlightCell(String cellHeader, int ruleNumber, String type) { public void highlightCell(String cellHeader, int ruleNumber, String type) {
annotateCell(cellHeader, ruleNumber, type, false, null, null); annotateCell(cellHeader, ruleNumber, type, false, false, null, null);
} }
public void redactCell(String cellHeader, int ruleNumber, String type, String reason, String legalBasis) { public void redactCell(String cellHeader, int ruleNumber, String type, boolean addAsRecommendations, String reason,
String legalBasis) {
annotateCell(cellHeader, ruleNumber, type, true, reason, legalBasis); annotateCell(cellHeader, ruleNumber, type, true, addAsRecommendations, reason, legalBasis);
} }
public void redactNotCell(String cellHeader, int ruleNumber, String type, String reason) { public void redactNotCell(String cellHeader, int ruleNumber, String type, boolean addAsRecommendations,
String reason) {
annotateCell(cellHeader, ruleNumber, type, false, reason, null); annotateCell(cellHeader, ruleNumber, type, false, addAsRecommendations, reason, null);
} }
private void annotateCell(String cellHeader, int ruleNumber, String type, boolean redact, String reason, private void annotateCell(String cellHeader, int ruleNumber, String type, boolean redact,
String legalBasis) { boolean addAsRecommendations, String reason, String legalBasis) {
String cleanHeaderName = cellHeader.replaceAll("\n", "").replaceAll(" ", "").replaceAll("-", ""); String cleanHeaderName = cellHeader.replaceAll("\n", "").replaceAll(" ", "").replaceAll("-", "");
@ -273,6 +285,7 @@ public class Section {
log.warn("Could not find any data for {}.", cellHeader); log.warn("Could not find any data for {}.", cellHeader);
} else { } else {
String word = value.toString(); String word = value.toString();
Entity entity = new Entity(word, type, value.getRowSpanStart(), value.getRowSpanStart() + word.length(), headline, sectionNumber); Entity entity = new Entity(word, type, value.getRowSpanStart(), value.getRowSpanStart() + word.length(), headline, sectionNumber);
entity.setRedaction(redact); entity.setRedaction(redact);
entity.setMatchedRule(ruleNumber); entity.setMatchedRule(ruleNumber);
@ -286,6 +299,25 @@ public class Section {
entities.add(entity); entities.add(entity);
entities = removeEntitiesContainedInLarger(entities); entities = removeEntitiesContainedInLarger(entities);
if (addAsRecommendations) {
String cleanedWord = word.replaceAll(",", " ").replaceAll(" ", " ").trim() + " ";
Pattern pattern = Patterns.AUTHOR_TABLE_SPITTER;
Matcher matcher = pattern.matcher(cleanedWord);
while (matcher.find()) {
String match = matcher.group().trim();
if (match.length() >= 3) {
if(!dictionaryService.getDictionary(type).getEntries().contains(match) && !dictionaryService.getDictionary(RECOMMENDATION_PREFIX + type).getEntries().contains(match)) {
dictionaryService.addToLocalDictionary(RECOMMENDATION_PREFIX + type, match);
}
String lastname = match.split(" ")[0];
if(!dictionaryService.getDictionary(type).getEntries().contains(lastname) && !dictionaryService.getDictionary(RECOMMENDATION_PREFIX + type).getEntries().contains(lastname)) {
dictionaryService.addToLocalDictionary(RECOMMENDATION_PREFIX + type, lastname);
}
}
}
}
} }
} }

84
redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/service/DictionaryService.java
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@ -1,17 +1,5 @@
package com.iqser.red.service.redaction.v1.server.redaction.service; package com.iqser.red.service.redaction.v1.server.redaction.service;
import com.iqser.red.service.configuration.v1.api.model.Colors;
import com.iqser.red.service.configuration.v1.api.model.TypeResponse;
import com.iqser.red.service.configuration.v1.api.model.TypeResult;
import com.iqser.red.service.redaction.v1.server.client.DictionaryClient;
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryModel;
import feign.FeignException;
import lombok.Getter;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
import org.apache.commons.collections4.CollectionUtils;
import org.springframework.stereotype.Service;
import java.awt.Color; import java.awt.Color;
import java.util.ArrayList; import java.util.ArrayList;
import java.util.Comparator; import java.util.Comparator;
@ -22,11 +10,27 @@ import java.util.Map;
import java.util.Set; import java.util.Set;
import java.util.stream.Collectors; import java.util.stream.Collectors;
import org.apache.commons.collections4.CollectionUtils;
import org.springframework.stereotype.Service;
import com.iqser.red.service.configuration.v1.api.model.Colors;
import com.iqser.red.service.configuration.v1.api.model.TypeResponse;
import com.iqser.red.service.configuration.v1.api.model.TypeResult;
import com.iqser.red.service.redaction.v1.server.client.DictionaryClient;
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryModel;
import feign.FeignException;
import lombok.Getter;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
@Slf4j @Slf4j
@Service @Service
@RequiredArgsConstructor @RequiredArgsConstructor
public class DictionaryService { public class DictionaryService {
public static final String RECOMMENDATION_PREFIX = "recommendation_";
private final DictionaryClient dictionaryClient; private final DictionaryClient dictionaryClient;
@Getter @Getter
@ -47,17 +51,24 @@ public class DictionaryService {
@Getter @Getter
private float[] notRedactedColor; private float[] notRedactedColor;
private Map<String, DictionaryModel> localAccessMap = new HashMap<>(); private Map<String, DictionaryModel> localAccessMap = new HashMap<>();
public boolean hasLocalEntries() { public boolean hasLocalEntries() {
return this.dictionary.stream().anyMatch(dm -> !dm.getLocalEntries().isEmpty()); return this.dictionary.stream().anyMatch(dm -> !dm.getLocalEntries().isEmpty());
} }
public void addToLocalDictionary(String type, String value) { public void addToLocalDictionary(String type, String value) {
localAccessMap.get(type).getLocalEntries().add(value); localAccessMap.get(type).getLocalEntries().add(value);
} }
public void clearLocalEntries() { public void clearLocalEntries() {
this.dictionary.forEach(dm -> dm.getLocalEntries().clear()); this.dictionary.forEach(dm -> dm.getLocalEntries().clear());
} }
@ -80,8 +91,8 @@ public class DictionaryService {
dictionary = typeResponse.getTypes() dictionary = typeResponse.getTypes()
.stream() .stream()
.map(t -> .map(t -> new DictionaryModel(t.getType(), t.getRank(), convertColor(t.getHexColor()), t.isCaseInsensitive(), t
new DictionaryModel(t.getType(), t.getRank(), convertColor(t.getHexColor()), t.isCaseInsensitive(), t.isHint(), convertEntries(t), new HashSet<>())) .isHint(), t.isRecommendation(), convertEntries(t), new HashSet<>()))
.sorted(Comparator.comparingInt(DictionaryModel::getRank).reversed()) .sorted(Comparator.comparingInt(DictionaryModel::getRank).reversed())
.collect(Collectors.toList()); .collect(Collectors.toList());
@ -101,6 +112,19 @@ public class DictionaryService {
} }
public void updateExternalDictionary(){
dictionary.forEach(dm -> {
if(dm.isRecommendation() && !dm.getLocalEntries().isEmpty()){
dictionaryClient.addEntries(dm.getType(), new ArrayList<>(dm.getLocalEntries()), false);
long externalVersion = dictionaryClient.getVersion();
if(externalVersion == dictionaryVersion + 1){
dictionaryVersion = externalVersion;
}
}
});
}
private Set<String> convertEntries(TypeResult t) { private Set<String> convertEntries(TypeResult t) {
if (t.isCaseInsensitive()) { if (t.isCaseInsensitive()) {
@ -121,7 +145,9 @@ public class DictionaryService {
return new float[]{color.getRed() / 255f, color.getGreen() / 255f, color.getBlue() / 255f}; return new float[]{color.getRed() / 255f, color.getGreen() / 255f, color.getBlue() / 255f};
} }
public boolean isCaseInsensitiveDictionary(String type) { public boolean isCaseInsensitiveDictionary(String type) {
DictionaryModel dictionaryModel = localAccessMap.get(type); DictionaryModel dictionaryModel = localAccessMap.get(type);
if (dictionaryModel != null) { if (dictionaryModel != null) {
return dictionaryModel.isCaseInsensitive(); return dictionaryModel.isCaseInsensitive();
@ -129,7 +155,9 @@ public class DictionaryService {
return false; return false;
} }
public float[] getColor(String type) { public float[] getColor(String type) {
DictionaryModel model = localAccessMap.get(type); DictionaryModel model = localAccessMap.get(type);
if (model != null) { if (model != null) {
return model.getColor(); return model.getColor();
@ -137,11 +165,39 @@ public class DictionaryService {
return defaultColor; return defaultColor;
} }
public boolean isHint(String type) { public boolean isHint(String type) {
DictionaryModel model = localAccessMap.get(type); DictionaryModel model = localAccessMap.get(type);
if (model != null) { if (model != null) {
return model.isHint(); return model.isHint();
} }
return false; return false;
} }
public boolean isRecommendation(String type) {
DictionaryModel model = localAccessMap.get(type);
if (model != null) {
return model.isRecommendation();
}
return false;
}
public boolean hasRecommendationDictionary(String type) {
DictionaryModel model = localAccessMap.get(RECOMMENDATION_PREFIX + type);
if (model != null) {
return true;
}
return false;
}
public DictionaryModel getDictionary(String type) {
return localAccessMap.get(type);
}
} }

68
redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/service/EntityRedactionService.java
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@ -1,5 +1,19 @@
package com.iqser.red.service.redaction.v1.server.redaction.service; package com.iqser.red.service.redaction.v1.server.redaction.service;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.regex.Pattern;
import java.util.stream.Collectors;
import java.util.stream.Stream;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.lang3.StringUtils;
import org.springframework.stereotype.Service;
import com.iqser.red.service.redaction.v1.model.ManualRedactionEntry; import com.iqser.red.service.redaction.v1.model.ManualRedactionEntry;
import com.iqser.red.service.redaction.v1.model.ManualRedactions; import com.iqser.red.service.redaction.v1.model.ManualRedactions;
import com.iqser.red.service.redaction.v1.model.Rectangle; import com.iqser.red.service.redaction.v1.model.Rectangle;
@ -14,18 +28,8 @@ import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
import com.iqser.red.service.redaction.v1.server.redaction.model.Section; import com.iqser.red.service.redaction.v1.server.redaction.model.Section;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Cell; import com.iqser.red.service.redaction.v1.server.tableextraction.model.Cell;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table; import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
import lombok.RequiredArgsConstructor;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.lang3.StringUtils;
import org.springframework.stereotype.Service;
import java.util.ArrayList; import lombok.RequiredArgsConstructor;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.regex.Pattern;
@Service @Service
@RequiredArgsConstructor @RequiredArgsConstructor
@ -34,19 +38,31 @@ public class EntityRedactionService {
private final DictionaryService dictionaryService; private final DictionaryService dictionaryService;
private final DroolsExecutionService droolsExecutionService; private final DroolsExecutionService droolsExecutionService;
public void processDocument(Document classifiedDoc, ManualRedactions manualRedactions) { public void processDocument(Document classifiedDoc, ManualRedactions manualRedactions) {
dictionaryService.updateDictionary(); dictionaryService.updateDictionary();
droolsExecutionService.updateRules(); droolsExecutionService.updateRules();
dictionaryService.clearLocalEntries(); dictionaryService.clearLocalEntries();
Set<Entity> documentEntities = new HashSet<>(findEntities(classifiedDoc, manualRedactions, false)); Set<Entity> documentEntities = new HashSet<>(findEntities(classifiedDoc, manualRedactions, false, null));
if (dictionaryService.hasLocalEntries()) { if (dictionaryService.hasLocalEntries()) {
Set<Entity> foundByLocal = findEntities(classifiedDoc, manualRedactions, true);
Map<Integer, Set<Entity>> hintsPerSectionNumber = new HashMap<>();
documentEntities.stream().forEach(entity -> {
if (dictionaryService.isHint(entity.getType())) {
hintsPerSectionNumber.computeIfAbsent(entity.getSectionNumber(), (x) -> new HashSet<>())
.add(entity);
}
});
Set<Entity> foundByLocal = findEntities(classifiedDoc, manualRedactions, true, hintsPerSectionNumber);
// HashSet keeps the older value, but we want the new only. // HashSet keeps the older value, but we want the new only.
documentEntities.removeAll(foundByLocal); documentEntities.removeAll(foundByLocal);
documentEntities.addAll(foundByLocal); documentEntities.addAll(foundByLocal);
removeEntitiesContainedInLarger(documentEntities);
} }
for (Entity entity : documentEntities) { for (Entity entity : documentEntities) {
@ -60,14 +76,18 @@ public class EntityRedactionService {
classifiedDoc.getEntities() classifiedDoc.getEntities()
.computeIfAbsent(entry.getKey(), (x) -> new ArrayList<>()) .computeIfAbsent(entry.getKey(), (x) -> new ArrayList<>())
.add(new Entity(entity.getWord(), entity.getType(), entity.isRedaction(), entity.getRedactionReason(), entry .add(new Entity(entity.getWord(), entity.getType(), entity.isRedaction(), entity.getRedactionReason(), entry
.getValue(), entity.getHeadline(), entity.getMatchedRule(), entity.getSectionNumber(), entity.getLegalBasis())); .getValue(), entity.getHeadline(), entity.getMatchedRule(), entity.getSectionNumber(), entity
.getLegalBasis()));
} }
} }
dictionaryService.updateExternalDictionary();
} }
private Set<Entity> findEntities(Document classifiedDoc, ManualRedactions manualRedactions, boolean localEntries) { private Set<Entity> findEntities(Document classifiedDoc, ManualRedactions manualRedactions, boolean localEntries,
Map<Integer, Set<Entity>> hintsPerSectionNumber) {
Set<Entity> documentEntities = new HashSet<>(); Set<Entity> documentEntities = new HashSet<>();
int sectionNumber = 1; int sectionNumber = 1;
for (Paragraph paragraph : classifiedDoc.getParagraphs()) { for (Paragraph paragraph : classifiedDoc.getParagraphs()) {
@ -106,7 +126,9 @@ public class EntityRedactionService {
Section analysedRowSection = droolsExecutionService.executeRules(Section.builder() Section analysedRowSection = droolsExecutionService.executeRules(Section.builder()
.dictionaryService(dictionaryService) .dictionaryService(dictionaryService)
.entities(rowEntities) .entities(hintsPerSectionNumber != null && hintsPerSectionNumber.containsKey(sectionNumber) ? Stream
.concat(rowEntities.stream(), hintsPerSectionNumber.get(sectionNumber).stream())
.collect(Collectors.toSet()) : rowEntities)
.text(searchableRow.getAsStringWithLinebreaks()) .text(searchableRow.getAsStringWithLinebreaks())
.searchText(searchableRow.toString()) .searchText(searchableRow.toString())
.headline(table.getHeadline()) .headline(table.getHeadline())
@ -124,7 +146,9 @@ public class EntityRedactionService {
Set<Entity> entities = findEntities(searchableText, paragraph.getHeadline(), sectionNumber, localEntries); Set<Entity> entities = findEntities(searchableText, paragraph.getHeadline(), sectionNumber, localEntries);
Section analysedSection = droolsExecutionService.executeRules(Section.builder() Section analysedSection = droolsExecutionService.executeRules(Section.builder()
.dictionaryService(dictionaryService) .dictionaryService(dictionaryService)
.entities(entities) .entities(hintsPerSectionNumber != null && hintsPerSectionNumber.containsKey(sectionNumber) ? Stream
.concat(entities.stream(), hintsPerSectionNumber.get(sectionNumber).stream())
.collect(Collectors.toSet()) : entities)
.text(searchableText.getAsStringWithLinebreaks()) .text(searchableText.getAsStringWithLinebreaks())
.searchText(searchableText.toString()) .searchText(searchableText.toString())
.headline(paragraph.getHeadline()) .headline(paragraph.getHeadline())
@ -143,7 +167,10 @@ public class EntityRedactionService {
removeEntitiesContainedInLarger(entities); removeEntitiesContainedInLarger(entities);
for (Entity entity : entities) { for (Entity entity : entities) {
entity.setPositionSequences(text.getSequences(entity.getWord(), dictionaryService.isCaseInsensitiveDictionary(entity.getType()), entity.getTargetSequences())); if(entity.getPositionSequences().isEmpty()) {
entity.setPositionSequences(text.getSequences(entity.getWord(), dictionaryService.isCaseInsensitiveDictionary(entity
.getType()), entity.getTargetSequences()));
}
} }
return entities; return entities;
@ -204,7 +231,7 @@ public class EntityRedactionService {
for (Entity word : entities) { for (Entity word : entities) {
for (Entity inner : entities) { for (Entity inner : entities) {
if (inner.getWord().length() < word.getWord() if (inner.getWord().length() < word.getWord()
.length() && inner.getStart() >= word.getStart() && inner.getEnd() <= word.getEnd() && word != inner) { .length() && inner.getStart() >= word.getStart() && inner.getEnd() <= word.getEnd() && word != inner && word.getSectionNumber() == inner.getSectionNumber()) {
wordsToRemove.add(inner); wordsToRemove.add(inner);
} }
} }
@ -213,7 +240,8 @@ public class EntityRedactionService {
} }
private void addSectionToManualRedactions(List<TextBlock> textBlocks, ManualRedactions manualRedactions, String section, int sectionNumber) { private void addSectionToManualRedactions(List<TextBlock> textBlocks, ManualRedactions manualRedactions,
String section, int sectionNumber) {
if (manualRedactions == null || manualRedactions.getEntriesToAdd().isEmpty()) { if (manualRedactions == null || manualRedactions.getEntriesToAdd().isEmpty()) {
return; return;

12
redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/utils/Patterns.java Normal file
View File

@ -0,0 +1,12 @@
package com.iqser.red.service.redaction.v1.server.redaction.utils;
import java.util.regex.Pattern;
import lombok.experimental.UtilityClass;
@UtilityClass
public class Patterns {
public static Pattern AUTHOR_TABLE_SPITTER = Pattern.compile("((((di)|(van)) )|[A-Z]’)?[A-ZÄÖÜ][\\wäöüéèê]{2,}( ?[A-ZÄÖÜ]{1,2}\\.)+|((((di)|(van)) )|[A-Z]’)?[A-ZÄÖÜ][\\wäöüéèê]{2,}( ?[A-ZÄÖÜ]{1,2} )+");
}

5
redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/visualization/service/AnnotationHighlightService.java
View File

@ -270,6 +270,7 @@ public class AnnotationHighlightService {
.type(entity.getType()) .type(entity.getType())
.redacted(entity.isRedaction()) .redacted(entity.isRedaction())
.isHint(isHint(entity)) .isHint(isHint(entity))
.isRecommendation(isRecommendation(entity))
.section(entity.getHeadline()) .section(entity.getHeadline())
.sectionNumber(entity.getSectionNumber()) .sectionNumber(entity.getSectionNumber())
.matchedRule(entity.getMatchedRule()) .matchedRule(entity.getMatchedRule())
@ -425,6 +426,10 @@ public class AnnotationHighlightService {
return dictionaryService.isHint(entity.getType()); return dictionaryService.isHint(entity.getType());
} }
private boolean isRecommendation(Entity entity) {
return dictionaryService.isRecommendation(entity.getType());
}
private void drawSectionFrames(PDDocument document, Document classifiedDoc, boolean flatRedaction, PDPage pdPage, private void drawSectionFrames(PDDocument document, Document classifiedDoc, boolean flatRedaction, PDPage pdPage,
int page) throws IOException { int page) throws IOException {

61
redaction-service-v1/redaction-service-server-v1/src/test/java/com/iqser/red/service/redaction/v1/server/RedactionIntegrationTest.java
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@ -77,6 +77,11 @@ public class RedactionIntegrationTest {
private static final String PUBLISHED_INFORMATION = "published_information"; private static final String PUBLISHED_INFORMATION = "published_information";
private static final String TEST_METHOD = "test_method"; private static final String TEST_METHOD = "test_method";
private static final String RECOMMENDATION_AUTHOR = "recommendation_CBI_author";
private static final String RECOMMENDATION_ADDRESS = "recommendation_CBI_address";
private static final String FALSE_POSITIVE = "false_positive";
private static final String PII = "PII"; private static final String PII = "PII";
@Autowired @Autowired
@ -92,6 +97,7 @@ public class RedactionIntegrationTest {
private final Map<String, String> typeColorMap = new HashMap<>(); private final Map<String, String> typeColorMap = new HashMap<>();
private final Map<String, Boolean> hintTypeMap = new HashMap<>(); private final Map<String, Boolean> hintTypeMap = new HashMap<>();
private final Map<String, Boolean> caseInSensitiveMap = new HashMap<>(); private final Map<String, Boolean> caseInSensitiveMap = new HashMap<>();
private final Map<String, Boolean> recommendationTypeMap = new HashMap<>();
private final Colors colors = new Colors(); private final Colors colors = new Colors();
@TestConfiguration @TestConfiguration
@ -137,6 +143,9 @@ public class RedactionIntegrationTest {
when(dictionaryClient.getDictionaryForType(PUBLISHED_INFORMATION)).thenReturn(getDictionaryResponse(PUBLISHED_INFORMATION)); when(dictionaryClient.getDictionaryForType(PUBLISHED_INFORMATION)).thenReturn(getDictionaryResponse(PUBLISHED_INFORMATION));
when(dictionaryClient.getDictionaryForType(TEST_METHOD)).thenReturn(getDictionaryResponse(TEST_METHOD)); when(dictionaryClient.getDictionaryForType(TEST_METHOD)).thenReturn(getDictionaryResponse(TEST_METHOD));
when(dictionaryClient.getDictionaryForType(PII)).thenReturn(getDictionaryResponse(PII)); when(dictionaryClient.getDictionaryForType(PII)).thenReturn(getDictionaryResponse(PII));
when(dictionaryClient.getDictionaryForType(RECOMMENDATION_AUTHOR)).thenReturn(getDictionaryResponse(RECOMMENDATION_AUTHOR));
when(dictionaryClient.getDictionaryForType(RECOMMENDATION_ADDRESS)).thenReturn(getDictionaryResponse(RECOMMENDATION_ADDRESS));
when(dictionaryClient.getDictionaryForType(FALSE_POSITIVE)).thenReturn(getDictionaryResponse(FALSE_POSITIVE));
when(dictionaryClient.getColors()).thenReturn(colors); when(dictionaryClient.getColors()).thenReturn(colors);
} }
@ -198,6 +207,21 @@ public class RedactionIntegrationTest {
.stream() .stream()
.map(this::cleanDictionaryEntry) .map(this::cleanDictionaryEntry)
.collect(Collectors.toSet())); .collect(Collectors.toSet()));
dictionary.computeIfAbsent(RECOMMENDATION_AUTHOR, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/recommendation_CBI_author.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(RECOMMENDATION_ADDRESS, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/recommendation_CBI_address.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(FALSE_POSITIVE, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/false_positive.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
} }
@ -220,7 +244,9 @@ public class RedactionIntegrationTest {
typeColorMap.put(PUBLISHED_INFORMATION, "#85ebff"); typeColorMap.put(PUBLISHED_INFORMATION, "#85ebff");
typeColorMap.put(TEST_METHOD, "#91fae8"); typeColorMap.put(TEST_METHOD, "#91fae8");
typeColorMap.put(PII, "#66ccff"); typeColorMap.put(PII, "#66ccff");
typeColorMap.put(RECOMMENDATION_AUTHOR, "#8df06c");
typeColorMap.put(RECOMMENDATION_ADDRESS, "#8df06c");
typeColorMap.put(FALSE_POSITIVE, "#ffffff");
hintTypeMap.put(VERTEBRATE, true); hintTypeMap.put(VERTEBRATE, true);
hintTypeMap.put(ADDRESS, false); hintTypeMap.put(ADDRESS, false);
@ -233,6 +259,9 @@ public class RedactionIntegrationTest {
hintTypeMap.put(PUBLISHED_INFORMATION, true); hintTypeMap.put(PUBLISHED_INFORMATION, true);
hintTypeMap.put(TEST_METHOD, true); hintTypeMap.put(TEST_METHOD, true);
hintTypeMap.put(PII, false); hintTypeMap.put(PII, false);
hintTypeMap.put(RECOMMENDATION_AUTHOR, false);
hintTypeMap.put(RECOMMENDATION_ADDRESS, false);
hintTypeMap.put(FALSE_POSITIVE, true);
caseInSensitiveMap.put(VERTEBRATE, true); caseInSensitiveMap.put(VERTEBRATE, true);
caseInSensitiveMap.put(ADDRESS, false); caseInSensitiveMap.put(ADDRESS, false);
@ -245,6 +274,24 @@ public class RedactionIntegrationTest {
caseInSensitiveMap.put(PUBLISHED_INFORMATION, true); caseInSensitiveMap.put(PUBLISHED_INFORMATION, true);
caseInSensitiveMap.put(TEST_METHOD, false); caseInSensitiveMap.put(TEST_METHOD, false);
caseInSensitiveMap.put(PII, false); caseInSensitiveMap.put(PII, false);
caseInSensitiveMap.put(RECOMMENDATION_AUTHOR, false);
caseInSensitiveMap.put(RECOMMENDATION_ADDRESS, false);
caseInSensitiveMap.put(FALSE_POSITIVE, false);
recommendationTypeMap.put(VERTEBRATE, false);
recommendationTypeMap.put(ADDRESS, false);
recommendationTypeMap.put(AUTHOR, false);
recommendationTypeMap.put(SPONSOR, false);
recommendationTypeMap.put(NO_REDACTION_INDICATOR, false);
recommendationTypeMap.put(REDACTION_INDICATOR, false);
recommendationTypeMap.put(HINT_ONLY, false);
recommendationTypeMap.put(MUST_REDACT, false);
recommendationTypeMap.put(PUBLISHED_INFORMATION, false);
recommendationTypeMap.put(TEST_METHOD, false);
recommendationTypeMap.put(PII, false);
recommendationTypeMap.put(RECOMMENDATION_AUTHOR, true);
recommendationTypeMap.put(RECOMMENDATION_ADDRESS, true);
recommendationTypeMap.put(FALSE_POSITIVE, false);
colors.setDefaultColor("#acfc00"); colors.setDefaultColor("#acfc00");
colors.setNotRedacted("#cccccc"); colors.setNotRedacted("#cccccc");
@ -262,6 +309,7 @@ public class RedactionIntegrationTest {
.hexColor(typeColor.getValue()) .hexColor(typeColor.getValue())
.isHint(hintTypeMap.get(typeColor.getKey())) .isHint(hintTypeMap.get(typeColor.getKey()))
.isCaseInsensitive(caseInSensitiveMap.get(typeColor.getKey())) .isCaseInsensitive(caseInSensitiveMap.get(typeColor.getKey()))
.isRecommendation(recommendationTypeMap.get(typeColor.getKey()))
.build()) .build())
.collect(Collectors.toList()); .collect(Collectors.toList());
@ -275,6 +323,7 @@ public class RedactionIntegrationTest {
.entries(dictionary.get(type)) .entries(dictionary.get(type))
.isHint(hintTypeMap.get(type)) .isHint(hintTypeMap.get(type))
.isCaseInsensitive(caseInSensitiveMap.get(type)) .isCaseInsensitive(caseInSensitiveMap.get(type))
.isRecommendation(recommendationTypeMap.get(type))
.build(); .build();
} }
@ -333,7 +382,7 @@ public class RedactionIntegrationTest {
System.out.println("redactionTest"); System.out.println("redactionTest");
long start = System.currentTimeMillis(); long start = System.currentTimeMillis();
ClassPathResource pdfFileResource = new ClassPathResource("files/Primicarb/74 Pirimicarb_RAR_01_Volume_1_2017-12-04.pdf"); ClassPathResource pdfFileResource = new ClassPathResource("files/Metolachlor/S-Metolachlor_RAR_01_Volume_1_2018-09-06.pdf");
RedactionRequest request = RedactionRequest.builder() RedactionRequest request = RedactionRequest.builder()
.document(IOUtils.toByteArray(pdfFileResource.getInputStream())) .document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
@ -342,6 +391,12 @@ public class RedactionIntegrationTest {
RedactionResult result = redactionController.redact(request); RedactionResult result = redactionController.redact(request);
result.getRedactionLog().getRedactionLogEntry().forEach(entry -> {
if(entry.isRecommendation()){
System.out.println(entry.getValue());
}
});
try (FileOutputStream fileOutputStream = new FileOutputStream("/tmp/Redacted.pdf")) { try (FileOutputStream fileOutputStream = new FileOutputStream("/tmp/Redacted.pdf")) {
fileOutputStream.write(result.getDocument()); fileOutputStream.write(result.getDocument());
} }
@ -467,7 +522,7 @@ public class RedactionIntegrationTest {
public void htmlTablesTest() throws IOException { public void htmlTablesTest() throws IOException {
System.out.println("htmlTablesTest"); System.out.println("htmlTablesTest");
ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/line_breaks.pdf"); ClassPathResource pdfFileResource = new ClassPathResource("files/Fludioxonil/52 Fludioxonil_RAR_07_Volume_3CA_B-5_2018-02-21.pdf");
RedactionRequest request = RedactionRequest.builder() RedactionRequest request = RedactionRequest.builder()
.document(IOUtils.toByteArray(pdfFileResource.getInputStream())) .document(IOUtils.toByteArray(pdfFileResource.getInputStream()))

31
redaction-service-v1/redaction-service-server-v1/src/test/java/com/iqser/red/service/redaction/v1/server/redaction/service/EntityRedactionServiceTest.java
View File

@ -14,8 +14,11 @@ import java.util.ArrayList;
import java.util.Arrays; import java.util.Arrays;
import java.util.Collections; import java.util.Collections;
import java.util.HashSet; import java.util.HashSet;
import java.util.List;
import java.util.Set; import java.util.Set;
import java.util.concurrent.atomic.AtomicLong; import java.util.concurrent.atomic.AtomicLong;
import java.util.regex.Matcher;
import java.util.regex.Pattern;
import org.apache.commons.io.IOUtils; import org.apache.commons.io.IOUtils;
import org.apache.pdfbox.pdmodel.PDDocument; import org.apache.pdfbox.pdmodel.PDDocument;
@ -446,7 +449,7 @@ public class EntityRedactionServiceTest {
" when\n" + " when\n" +
" Section(rowEquals(\"Vertebrate study Y/N\", \"N\") || rowEquals(\"Vertebrate study Y/N\", \"No\"))\n" + " Section(rowEquals(\"Vertebrate study Y/N\", \"N\") || rowEquals(\"Vertebrate study Y/N\", \"No\"))\n" +
" then\n" + " then\n" +
" section.redactNotCell(\"Author(s)\", 8, \"name\", \"Not redacted because row is not a vertebrate study\");\n" + " section.redactNotCell(\"Author(s)\", 8, \"name\", false, \"Not redacted because row is not a vertebrate study\");\n" +
" section.redactNot(\"address\", 8, \"Not redacted because row is not a vertebrate study\");\n" + " section.redactNot(\"address\", 8, \"Not redacted because row is not a vertebrate study\");\n" +
" section.highlightCell(\"Vertebrate study Y/N\", 8, \"hint_only\");\n" + " section.highlightCell(\"Vertebrate study Y/N\", 8, \"hint_only\");\n" +
" end\n" + " end\n" +
@ -455,7 +458,7 @@ public class EntityRedactionServiceTest {
" Section(rowEquals(\"Vertebrate study Y/N\", \"Y\") || rowEquals(\"Vertebrate study Y/N\", " + " Section(rowEquals(\"Vertebrate study Y/N\", \"Y\") || rowEquals(\"Vertebrate study Y/N\", " +
"\"Yes\"))\n" + "\"Yes\"))\n" +
" then\n" + " then\n" +
" section.redactCell(\"Author(s)\", 9, \"name\", \"Redacted because row is a vertebrate study\", \"Reg (EC) No 1107/2009 Art. 63 (2g)\");\n" + " section.redactCell(\"Author(s)\", 9, \"name\", false, \"Redacted because row is a vertebrate study\", \"Reg (EC) No 1107/2009 Art. 63 (2g)\");\n" +
" section.redact(\"address\", 9, \"Redacted because row is a vertebrate study\", \"Reg (EC) No" + " section.redact(\"address\", 9, \"Redacted because row is a vertebrate study\", \"Reg (EC) No" +
" 1107/2009 Art. 63 (2g)\");\n" + " 1107/2009 Art. 63 (2g)\");\n" +
" section.highlightCell(\"Vertebrate study Y/N\", 9, \"must_redact\");\n" + " section.highlightCell(\"Vertebrate study Y/N\", 9, \"must_redact\");\n" +
@ -510,4 +513,28 @@ public class EntityRedactionServiceTest {
} }
} }
@Test
public void testAuthorSplitting(){
String word = "Porch JR, " + "Kendall TZ, " + "Krueger HO";
word.replaceAll(",", " ").replaceAll(" ", " ");
Pattern pattern = Pattern.compile("[A-ZÄÖÜ][\\wäöüéèê]{2,}( [A-ZÄÖÜ]{1,2}\\.)+");
Matcher matcher = pattern.matcher(word);
List<String> allMatches = new ArrayList<>();
while (matcher.find()) {
allMatches.add(matcher.group());
}
for(String name: allMatches) {
if(name.length() >= 3) {
System.out.println(name);
// dictionaryService.addToLocalDictionary(type, name);
}
}
}
} }

2
redaction-service-v1/redaction-service-server-v1/src/test/resources/dictionaries/CBI_author.txt
View File

@ -8586,4 +8586,4 @@ Zoriki Hosomi R.
Zoriki Hosomi Rosana Zoriki Hosomi Rosana
Zuberer D Zuberer D
Zubrod J Zubrod J
Zwicker R.E. Zwicker R.E.

2
redaction-service-v1/redaction-service-server-v1/src/test/resources/dictionaries/false_positive.txt Normal file
View File

@ -0,0 +1,2 @@
Long-term
Brown liquid

1
redaction-service-v1/redaction-service-server-v1/src/test/resources/dictionaries/must_redact.txt
View File

@ -1 +0,0 @@
determination of residues

0
redaction-service-v1/redaction-service-server-v1/src/test/resources/dictionaries/recommendation_CBI_address.txt Normal file
View File

0
redaction-service-v1/redaction-service-server-v1/src/test/resources/dictionaries/recommendation_CBI_author.txt Normal file
View File

1
redaction-service-v1/redaction-service-server-v1/src/test/resources/dictionaries/vertebrate.txt
View File

@ -167,7 +167,6 @@ sheepshead minnow
sheepshead minnows sheepshead minnows
shrew shrew
shrews shrews
Singh
sorex araneus sorex araneus
spea multiplicata spea multiplicata
spotted march frog spotted march frog

148
redaction-service-v1/redaction-service-server-v1/src/test/resources/drools/rules.drl
View File

@ -56,7 +56,8 @@ rule "6: Not redacted because Vertebrate Study = N"
when when
Section(rowEquals("Vertebrate study Y/N", "N") || rowEquals("Vertebrate study Y/N", "No")) Section(rowEquals("Vertebrate study Y/N", "N") || rowEquals("Vertebrate study Y/N", "No"))
then then
section.redactNotCell("Author(s)", 6, "CBI_author", "Not redacted because row is not a vertebrate study"); section.redactNotCell("Author(s)", 6, "CBI_author", true, "Not redacted because row is not a vertebrate study");
section.redactNot("CBI_author", 6, "Not redacted because row is not a vertebrate study");
section.redactNot("CBI_address", 6, "Not redacted because row is not a vertebrate study"); section.redactNot("CBI_address", 6, "Not redacted because row is not a vertebrate study");
section.highlightCell("Vertebrate study Y/N", 6, "hint_only"); section.highlightCell("Vertebrate study Y/N", 6, "hint_only");
end end
@ -75,7 +76,7 @@ rule "8: Redact Authors and Addresses in Reference Table if it is a Vertebrate s
when when
Section(rowEquals("Vertebrate study Y/N", "Y") || rowEquals("Vertebrate study Y/N", "Yes")) Section(rowEquals("Vertebrate study Y/N", "Y") || rowEquals("Vertebrate study Y/N", "Yes"))
then then
section.redactCell("Author(s)", 8, "CBI_author", "Redacted because row is a vertebrate study", "Reg (EC) No 1107/2009 Art. 63 (2g)"); section.redactCell("Author(s)", 8, "CBI_author", true, "Redacted because row is a vertebrate study", "Reg (EC) No 1107/2009 Art. 63 (2g)");
section.redact("CBI_address", 8, "Redacted because row is a vertebrate study", "Reg (EC) No 1107/2009 Art. 63 (2g)"); section.redact("CBI_address", 8, "Redacted because row is a vertebrate study", "Reg (EC) No 1107/2009 Art. 63 (2g)");
section.highlightCell("Vertebrate study Y/N", 8, "must_redact"); section.highlightCell("Vertebrate study Y/N", 8, "must_redact");
end end
@ -95,10 +96,12 @@ rule "10: Redact determination of residues"
Section(searchText.toLowerCase.contains("determination of residues") && ( Section(searchText.toLowerCase.contains("determination of residues") && (
searchText.toLowerCase.contains("livestock") || searchText.toLowerCase.contains("livestock") ||
searchText.toLowerCase.contains("live stock") || searchText.toLowerCase.contains("live stock") ||
searchText.toLowerCase.contains("egg") || searchText.toLowerCase.contains("tissue") ||
searchText.toLowerCase.contains("milk") || searchText.toLowerCase.contains("liver") ||
searchText.toLowerCase.contains("muscle") ||
searchText.toLowerCase.contains("bovine") || searchText.toLowerCase.contains("bovine") ||
searchText.toLowerCase.contains("ruminant") searchText.toLowerCase.contains("ruminant") ||
searchText.toLowerCase.contains("ruminants")
)) ))
then then
section.redact("CBI_author", 10, "Determination of residues was found.", "Reg (EC) No 1107/2009 Art. 63 (2g)"); section.redact("CBI_author", 10, "Determination of residues was found.", "Reg (EC) No 1107/2009 Art. 63 (2g)");
@ -106,25 +109,38 @@ rule "10: Redact determination of residues"
section.addHintAnnotation("determination of residues", "must_redact"); section.addHintAnnotation("determination of residues", "must_redact");
section.addHintAnnotation("livestock", "must_redact"); section.addHintAnnotation("livestock", "must_redact");
section.addHintAnnotation("live stock", "must_redact"); section.addHintAnnotation("live stock", "must_redact");
section.addHintAnnotation("egg", "must_redact"); section.addHintAnnotation("tissue", "must_redact");
section.addHintAnnotation("milk", "must_redact"); section.addHintAnnotation("liver", "must_redact");
section.addHintAnnotation("muscle", "must_redact");
section.addHintAnnotation("bovine", "must_redact"); section.addHintAnnotation("bovine", "must_redact");
section.addHintAnnotation("ruminant", "must_redact"); section.addHintAnnotation("ruminant", "must_redact");
section.addHintAnnotation("ruminants", "must_redact");
end end
rule "11: Redact if CTL/* or BL/* was found"
when
Section(searchText.contains("CTL/") || searchText.contains("BL/"))
then
section.redact("CBI_author", 11, "Laboraty for vertebrate studies found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
section.redact("CBI_address", 11, "Laboraty for vertebrate studies found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
section.addHintAnnotation("CTL", "must_redact");
section.addHintAnnotation("BL", "must_redact");
end
// --------------------------------------- PII rules ------------------------------------------------------------------- // --------------------------------------- PII rules -------------------------------------------------------------------
rule "11: Redacted PII Personal Identification Information" rule "12: Redacted PII Personal Identification Information"
when when
Section(matchesType("PII")) Section(matchesType("PII"))
then then
section.redact("PII", 11, "PII (Personal Identification Information) found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redact("PII", 12, "PII (Personal Identification Information) found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
end end
rule "12: Redact contact information" rule "13: Redact contact information"
when when
Section(text.contains("Contact point:") Section(text.contains("Contact point:")
|| text.contains("Phone:") || text.contains("Phone:")
@ -142,96 +158,96 @@ rule "12: Redact contact information"
|| text.contains("Telephone:") || text.contains("Telephone:")
|| text.contains("European contact:")) || text.contains("European contact:"))
then then
section.redactLineAfter("Contact point:", "PII", 12, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("Contact point:", "PII", 13, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Phone:", "PII", 12, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("Phone:", "PII", 13, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Fax:", "PII", 12, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("Fax:", "PII", 13, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Tel.:", "PII", 12, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("Tel.:", "PII", 13, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Tel:", "PII", 12, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("Tel:", "PII", 13, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("E-mail:", "PII", 12, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("E-mail:", "PII", 13, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Email:", "PII", 12, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("Email:", "PII", 13, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("e-mail:", "PII", 12, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("e-mail:", "PII", 13, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("E-mail address:", "PII", 12, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("E-mail address:", "PII", 13, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Contact:", "PII", 12, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("Contact:", "PII", 13, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Alternative contact:", "PII", 12, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("Alternative contact:", "PII", 13, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Telephone number:", "PII", 12, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("Telephone number:", "PII", 13, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Telephone No:", "PII", 12, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("Telephone No:", "PII", 13, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Fax number:", "PII", 12, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("Fax number:", "PII", 13, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Telephone:", "PII", 12, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("Telephone:", "PII", 13, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactBetween("No:", "Fax", "PII", 12, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactBetween("No:", "Fax", "PII", 13, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactBetween("Contact:", "Tel.:", "PII", 12, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactBetween("Contact:", "Tel.:", "PII", 13, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("European contact:", "PII", 12, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("European contact:", "PII", 13, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
end end
rule "13: Redact contact information if applicant is found" rule "14: Redact contact information if applicant is found"
when when
Section(headlineContainsWord("applicant") || text.contains("Applicant") || headlineContainsWord("Primary contact") || headlineContainsWord("Alternative contact") || text.contains("Contact:") || text.contains("Telephone number:")) Section(headlineContainsWord("applicant") || text.contains("Applicant") || headlineContainsWord("Primary contact") || headlineContainsWord("Alternative contact") || text.contains("Contact:") || text.contains("Telephone number:"))
then then
section.redactLineAfter("Contact point:", "PII", 13, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("Contact point:", "PII", 14, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Phone:", "PII", 13, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("Phone:", "PII", 14, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Fax:", "PII", 13, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("Fax:", "PII", 14, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Tel.:", "PII", 13, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("Tel.:", "PII", 14, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Tel:", "PII", 13, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("Tel:", "PII", 14, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("E-mail:", "PII", 13, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("E-mail:", "PII", 14, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Email:", "PII", 13, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("Email:", "PII", 14, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("e-mail:", "PII", 13, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("e-mail:", "PII", 14, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("E-mail address:", "PII", 13, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("E-mail address:", "PII", 14, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Contact:", "PII", 13, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("Contact:", "PII", 14, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Alternative contact:", "PII", 13, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("Alternative contact:", "PII", 14, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Telephone number:", "PII", 13, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("Telephone number:", "PII", 14, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Telephone No:", "PII", 13, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("Telephone No:", "PII", 14, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Fax number:", "PII", 13, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("Fax number:", "PII", 14, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Telephone:", "PII", 13, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("Telephone:", "PII", 14, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactBetween("No:", "Fax", "PII", 13, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactBetween("No:", "Fax", "PII", 14, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactBetween("Contact:", "Tel.:", "PII", 13, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactBetween("Contact:", "Tel.:", "PII", 14, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("European contact:", "PII", 13, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("European contact:", "PII", 14, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
end end
rule "14: Redact contact information if Producer is found" rule "15: Redact contact information if Producer is found"
when when
Section(text.toLowerCase().contains("producer of the plant protection") || text.toLowerCase().contains("producer of the active substance") || text.contains("Manufacturer of the active substance") || text.contains("Manufacturer:") || text.contains("Producer or producers of the active substance")) Section(text.toLowerCase().contains("producer of the plant protection") || text.toLowerCase().contains("producer of the active substance") || text.contains("Manufacturer of the active substance") || text.contains("Manufacturer:") || text.contains("Producer or producers of the active substance"))
then then
section.redactLineAfter("Contact:", "PII", 14, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("Contact:", "PII", 15, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Telephone:", "PII", 14, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("Telephone:", "PII", 15, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Phone:", "PII", 14, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("Phone:", "PII", 15, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Fax:", "PII", 14, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("Fax:", "PII", 15, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("E-mail:", "PII", 14, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("E-mail:", "PII", 15, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Contact:", "PII", 14, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("Contact:", "PII", 15, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Fax number:", "PII", 14, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("Fax number:", "PII", 15, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Telephone number:", "PII", 14, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("Telephone number:", "PII", 15, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Tel:", "PII", 14, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLineAfter("Tel:", "PII", 15, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactBetween("No:", "Fax", "PII", 14, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactBetween("No:", "Fax", "PII", 15, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
end end
rule "15: Redact AUTHOR(S)" rule "16: Redact AUTHOR(S)"
when when
Section(searchText.contains("AUTHOR(S):")) Section(searchText.contains("AUTHOR(S):"))
then then
section.redactLinesBetween("AUTHOR(S):", "COMPLETION DATE:", "PII", 15, true, "AUTHOR(S) was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactLinesBetween("AUTHOR(S):", "COMPLETION DATE:", "PII", 16, true, "AUTHOR(S) was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
end end
rule "16: Redact PERFORMING LABORATORY" rule "17: Redact PERFORMING LABORATORY"
when when
Section(searchText.contains("PERFORMING LABORATORY:")) Section(searchText.contains("PERFORMING LABORATORY:"))
then then
section.redactBetween("PERFORMING LABORATORY:", "LABORATORY PROJECT ID:", "PII", 16, true, "PERFORMING LABORATORY was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactBetween("PERFORMING LABORATORY:", "LABORATORY PROJECT ID:", "PII", 17, true, "PERFORMING LABORATORY was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
end end
rule "17: Redact On behalf of Sequani Ltd.:" rule "18: Redact On behalf of Sequani Ltd.:"
when when
Section(searchText.contains("On behalf of Sequani Ltd.: Name Title")) Section(searchText.contains("On behalf of Sequani Ltd.: Name Title"))
then then
section.redactBetween("On behalf of Sequani Ltd.: Name Title", "On behalf of", "PII", 17, false , "PII (Personal Identification Information) found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactBetween("On behalf of Sequani Ltd.: Name Title", "On behalf of", "PII", 18, false , "PII (Personal Identification Information) found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
end end
rule "18: Redact On behalf of Syngenta Ltd.:" rule "19: Redact On behalf of Syngenta Ltd.:"
when when
Section(searchText.contains("On behalf of Syngenta Ltd.: Name Title")) Section(searchText.contains("On behalf of Syngenta Ltd.: Name Title"))
then then
section.redactBetween("On behalf of Syngenta Ltd.: Name Title", "Study dates", "PII", 18, false , "PII (Personal Identification Information) found", "Reg (EC) No 1107/2009 Art. 63 (2e)"); section.redactBetween("On behalf of Syngenta Ltd.: Name Title", "Study dates", "PII", 19, false , "PII (Personal Identification Information) found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
end end