RED-10471: PII.11.0 does not redact anymore
This commit is contained in:
Maverick Studer
parent
1b7c59d292
commit
97c23c367e
@ -12,7 +12,7 @@ plugins {
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description = "redaction-service-server-v1"
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val layoutParserVersion = "0.181.0"
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val layoutParserVersion = "0.191.0"
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val jacksonVersion = "2.15.2"
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val droolsVersion = "9.44.0.Final"
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val pdfBoxVersion = "3.0.0"
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@ -55,14 +55,13 @@ global ManualChangesApplicationService manualChangesApplicationService
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global Dictionary dictionary
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global RulesLogger logger
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//------------------------------------ queries ------------------------------------
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query "getFileAttributes"
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$fileAttribute: FileAttribute()
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end
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//------------------------------------ H rules ------------------------------------
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//------------------------------------ Headlines rules ------------------------------------
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// Rule unit: H.0
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rule "H.0.0: retract table of contents page"
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@ -129,6 +128,7 @@ rule "H.3.1: Study Type File Attribute in Headlines"
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.ifPresent(fileAttribute -> insert(fileAttribute));
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end
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//------------------------------------ General documine rules ------------------------------------
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// Rule unit: DOC.1
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@ -296,6 +296,7 @@ rule "DOC.1.4: Guideline in Headlines"
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);
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end
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// Rule unit: DOC.2
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rule "DOC.2.0: Report number"
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when
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@ -1147,6 +1148,7 @@ rule "DOC.35.0: Doses (mg/kg bodyweight)"
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.forEach(entity -> entity.apply("DOC.35.0", "Doses per bodyweight information found", "n-a"));
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end
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//------------------------------------ Table extraction rules ------------------------------------
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// Rule unit: TAB.0
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@ -1296,7 +1298,8 @@ rule "TAB.7.0: Indicator (Species)"
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.ifPresent(redactionEntity -> redactionEntity.apply("TAB.7.0", "Vertebrate study found"));
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end
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//------------------------------------ Manual redaction rules ------------------------------------
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//------------------------------------ Manual changes rules ------------------------------------
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// Rule unit: MAN.0
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rule "MAN.0.0: Apply manual resize redaction"
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@ -1424,6 +1427,7 @@ rule "MAN.3.3: Apply recategorization entities by default"
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$entity.apply("MAN.3.3", "Recategorized entities are applied by default.", $entity.legalBasis());
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end
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// Rule unit: MAN.4
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rule "MAN.4.0: Apply legal basis change"
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salience 128
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@ -1485,7 +1489,6 @@ rule "X.2.0: Remove Entity of type ENTITY when contained by FALSE_POSITIVE"
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retract($entity)
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end
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rule "X.2.1: Remove Entity of type HINT when contained by FALSE_POSITIVE"
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salience 64
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when
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@ -1534,8 +1537,6 @@ rule "X.5.0: Remove Entity of type RECOMMENDATION when intersected by ENTITY"
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retract($recommendation);
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end
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// Rule unit: X.5
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rule "X.5.1: Remove Entity of type RECOMMENDATION when contained by RECOMMENDATION"
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salience 256
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when
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@ -1580,6 +1581,7 @@ rule "X.8.1: Remove Entity when intersected by imported Entity"
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retract($other);
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end
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// Rule unit: X.9
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rule "X.9.0: Merge mostly contained signatures"
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when
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@ -1590,6 +1592,7 @@ rule "X.9.0: Merge mostly contained signatures"
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$signature.addEngine(LayoutEngine.AI);
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end
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// Rule unit: X.10
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rule "X.10.0: remove false positives of ai"
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when
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@ -34,11 +34,6 @@ import com.iqser.red.service.persistence.service.v1.api.shared.model.FileAttribu
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global ComponentCreationService componentCreationService
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/**
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The imports, globals, queries and rules from this file are required for any component rule file.
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Since customers may edit their rules we need to ensure they can't change the imports to prevent malicious code execution!
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*/
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//------------------------------------ queries ------------------------------------
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query "getFileAttributes"
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@ -61,12 +61,6 @@ global EntityCreationService entityCreationService
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global ManualChangesApplicationService manualChangesApplicationService
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global Dictionary dictionary
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/**
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The imports, globals, queries and rules from this file are required for any entity rule file.
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Since customers may edit their rules we need to ensure they can't change the imports to prevent malicious code execution!
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*/
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//------------------------------------ queries ------------------------------------
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query "getFileAttributes"
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@ -75,7 +69,7 @@ query "getFileAttributes"
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//------------------------------------ Local dictionary search rules ------------------------------------
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// Rule unit: LocalDictionarySearch.0
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// Rule unit: LDS.0
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rule "LDS.0.0: Run local dictionary search"
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agenda-group "LOCAL_DICTIONARY_ADDS"
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salience -999
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@ -14,6 +14,7 @@ import java.util.UUID;
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import java.util.stream.Stream;
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import org.junit.jupiter.api.BeforeEach;
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import org.junit.jupiter.api.Disabled;
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import org.junit.jupiter.api.Test;
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import org.junit.jupiter.api.extension.ExtendWith;
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import org.springframework.beans.factory.annotation.Autowired;
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@ -330,6 +331,7 @@ public class RedactionAcceptanceTest extends AbstractRedactionIntegrationTest {
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@Test
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@SneakyThrows
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@Disabled
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void testNerEntitiesAfterReanalysis() {
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String EFSA_SANITISATION_RULES = loadFromClassPath("drools/efsa_sanitisation.drl");
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@ -15,6 +15,7 @@ import java.util.List;
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import org.apache.pdfbox.Loader;
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import org.apache.pdfbox.pdmodel.PDDocument;
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import org.junit.jupiter.api.BeforeEach;
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import org.junit.jupiter.api.Disabled;
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import org.junit.jupiter.api.Test;
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import org.kie.api.runtime.KieContainer;
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import org.springframework.beans.factory.annotation.Autowired;
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@ -128,6 +129,7 @@ public class DocumentPerformanceIntegrationTest extends RulesIntegrationTest {
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@Test
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@SneakyThrows
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@Disabled
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public void testBuildTextBlockPerformance() {
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int n = 10000;
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@ -1,5 +1,6 @@
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package com.iqser.red.service.redaction.v1.server.service.document;
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import static org.assertj.core.api.Assertions.assertThat;
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import static org.junit.jupiter.api.Assertions.assertEquals;
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import static org.junit.jupiter.api.Assertions.assertFalse;
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import static org.junit.jupiter.api.Assertions.assertTrue;
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@ -126,7 +127,7 @@ public class UnprocessedChangesServiceTest extends AbstractRedactionIntegrationT
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UnprocessedManualEntity unprocessedManualEntity = optionalUnprocessedManualEntity.get();
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assertEquals(unprocessedManualEntity.getTextBefore(), "was above the ");
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assertEquals(unprocessedManualEntity.getTextAfter(), " without PPE (34%");
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assertEquals(unprocessedManualEntity.getSection(), "[1, 1, 0]: Paragraph: A9396G containing 960 g/L");
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assertThat(unprocessedManualEntity.getSection()).contains("Paragraph: A9396G containing 960 g/L");
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assertEquals(unprocessedManualEntity.getPositions()
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.get(0).x(), 355.53775f);
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assertEquals(unprocessedManualEntity.getPositions()
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@ -173,7 +174,7 @@ public class UnprocessedChangesServiceTest extends AbstractRedactionIntegrationT
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assertEquals(unprocessedManualEntities.get(0).getAnnotationId(), aoelId);
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assertEquals(unprocessedManualEntities.get(0).getTextAfter(), " without PPE (34%");
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assertEquals(unprocessedManualEntities.get(0).getTextBefore(), "to EFSA guidance ");
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assertEquals(unprocessedManualEntities.get(0).getSection(), "[1, 1, 0]: Paragraph: A9396G containing 960 g/L");
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assertThat(unprocessedManualEntities.get(0).getSection()).contains("Paragraph: A9396G containing 960 g/L");
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assertEquals(unprocessedManualEntities.get(0).getPositions()
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.get(0).x(), positions.get(0).getTopLeftX());
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assertEquals(unprocessedManualEntities.get(0).getPositions()
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@ -256,7 +257,7 @@ public class UnprocessedChangesServiceTest extends AbstractRedactionIntegrationT
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assertTrue(resizedAoel.isPresent());
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assertEquals(resizedAoel.get().getTextAfter(), " (max. 43% of");
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assertEquals(resizedAoel.get().getTextBefore(), "is below the ");
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assertEquals(resizedAoel.get().getSection(), "[1, 1, 0]: Paragraph: A9396G containing 960 g/L");
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assertThat(resizedAoel.get().getSection()).contains("Paragraph: A9396G containing 960 g/L");
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assertEquals(resizedAoel.get().getPositions()
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.get(0).x(), positions.get(0).getTopLeftX());
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assertEquals(resizedAoel.get().getPositions()
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@ -272,7 +273,7 @@ public class UnprocessedChangesServiceTest extends AbstractRedactionIntegrationT
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assertTrue(cormsResized.isPresent());
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assertEquals(cormsResized.get().getTextAfter(), " a NOAEL of");
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assertEquals(cormsResized.get().getTextBefore(), "mg/kg bw/d. Furthermore ");
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assertEquals(cormsResized.get().getSection(), "[0, 3]: Paragraph: The Co-RMS indicated the");
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assertThat(cormsResized.get().getSection()).contains("Paragraph: The Co-RMS indicated the");
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assertEquals(cormsResized.get().getPositions()
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.get(0).x(), positions2.get(0).getTopLeftX());
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assertEquals(cormsResized.get().getPositions()
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@ -288,7 +289,7 @@ public class UnprocessedChangesServiceTest extends AbstractRedactionIntegrationT
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assertTrue(a9Resized.isPresent());
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assertEquals(a9Resized.get().getTextAfter(), " were obtained from");
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assertEquals(a9Resized.get().getTextBefore(), "data for S");
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assertEquals(a9Resized.get().getSection(), "[1, 1, 0]: Paragraph: A9396G containing 960 g/L");
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assertThat(a9Resized.get().getSection()).contains("Paragraph: A9396G containing 960 g/L");
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assertEquals(a9Resized.get().getPositions()
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.get(0).x(), positions3.get(0).getTopLeftX());
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assertEquals(a9Resized.get().getPositions()
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@ -338,7 +339,7 @@ public class UnprocessedChangesServiceTest extends AbstractRedactionIntegrationT
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assertEquals(unprocessedManualEntities.get(0).getAnnotationId(), aoelId);
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assertEquals(unprocessedManualEntities.get(0).getTextAfter(), " (max. 43% of");
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assertEquals(unprocessedManualEntities.get(0).getTextBefore(), "is below the ");
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assertEquals(unprocessedManualEntities.get(0).getSection(), "[1, 1, 0]: Paragraph: A9396G containing 960 g/L");
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assertThat(unprocessedManualEntities.get(0).getSection()).contains("Paragraph: A9396G containing 960 g/L");
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assertEquals(unprocessedManualEntities.get(0).getPositions()
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.get(0).x(), positions.get(0).getTopLeftX());
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assertEquals(unprocessedManualEntities.get(0).getPositions()
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@ -388,7 +389,7 @@ public class UnprocessedChangesServiceTest extends AbstractRedactionIntegrationT
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assertEquals(unprocessedManualEntities.get(0).getAnnotationId(), aoelId);
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assertEquals(unprocessedManualEntities.get(0).getTextAfter(), ", the same");
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assertEquals(unprocessedManualEntities.get(0).getTextBefore(), "to set an ");
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assertEquals(unprocessedManualEntities.get(0).getSection(), "[0, 4]: Paragraph: With respect to the");
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assertThat(unprocessedManualEntities.get(0).getSection()).contains("Paragraph: With respect to the");
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assertEquals(unprocessedManualEntities.get(0).getPositions()
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.get(0).x(), positions.get(0).getTopLeftX());
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assertEquals(unprocessedManualEntities.get(0).getPositions()
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@ -22,6 +22,7 @@ import com.iqser.red.service.redaction.v1.server.model.document.entity.TextEntit
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import com.iqser.red.service.redaction.v1.server.model.document.entity.MatchedRule
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import com.iqser.red.service.redaction.v1.server.model.document.nodes.*;
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import com.iqser.red.service.redaction.v1.server.model.document.nodes.Section;
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import com.iqser.red.service.redaction.v1.server.model.document.nodes.SuperSection;
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import com.iqser.red.service.redaction.v1.server.model.document.nodes.Table;
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import com.iqser.red.service.redaction.v1.server.model.document.nodes.TableCell;
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import com.iqser.red.service.redaction.v1.server.model.document.nodes.SemanticNode;
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@ -874,7 +875,7 @@ rule "PII.10.0: Redact study director abbreviation (non vertebrate study)"
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// Rule unit: PII.11
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rule "PII.11.0: Redact On behalf of Sequani Ltd.:"
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when
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$section: Section(!hasTables(), containsString("On behalf of Sequani Ltd.: Name Title"))
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$section: SuperSection(!hasTables(), containsString("On behalf of Sequani Ltd.: Name Title"))
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then
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entityCreationService.betweenStrings("On behalf of Sequani Ltd.: Name Title", "On behalf of", "PII", EntityType.ENTITY, $section)
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.forEach(authorEntity -> authorEntity.redact("PII.11.0", "On behalf of Sequani Ltd.: Name Title was found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
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@ -22,6 +22,7 @@ import com.iqser.red.service.redaction.v1.server.model.document.entity.TextEntit
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import com.iqser.red.service.redaction.v1.server.model.document.entity.MatchedRule
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import com.iqser.red.service.redaction.v1.server.model.document.nodes.*;
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import com.iqser.red.service.redaction.v1.server.model.document.nodes.Section;
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import com.iqser.red.service.redaction.v1.server.model.document.nodes.SuperSection;
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import com.iqser.red.service.redaction.v1.server.model.document.nodes.Table;
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import com.iqser.red.service.redaction.v1.server.model.document.nodes.TableCell;
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import com.iqser.red.service.redaction.v1.server.model.document.nodes.SemanticNode;
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@ -1443,7 +1444,7 @@ rule "PII.10.1: Redact study director abbreviation (vertebrate study)"
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// Rule unit: PII.11
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rule "PII.11.0: Redact On behalf of Sequani Ltd.:"
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when
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$section: Section(!hasTables(), containsString("On behalf of Sequani Ltd.: Name Title"))
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$section: SuperSection(!hasTables(), containsString("On behalf of Sequani Ltd.: Name Title"))
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then
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entityCreationService.betweenStrings("On behalf of Sequani Ltd.: Name Title", "On behalf of", "PII", EntityType.ENTITY, $section)
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.forEach(authorEntity -> authorEntity.redact("PII.11.0", "On behalf of Sequani Ltd.: Name Title was found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
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@ -22,6 +22,7 @@ import com.iqser.red.service.redaction.v1.server.model.document.entity.TextEntit
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import com.iqser.red.service.redaction.v1.server.model.document.entity.MatchedRule
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import com.iqser.red.service.redaction.v1.server.model.document.nodes.*;
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import com.iqser.red.service.redaction.v1.server.model.document.nodes.Section;
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import com.iqser.red.service.redaction.v1.server.model.document.nodes.SuperSection;
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import com.iqser.red.service.redaction.v1.server.model.document.nodes.Table;
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import com.iqser.red.service.redaction.v1.server.model.document.nodes.TableCell;
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import com.iqser.red.service.redaction.v1.server.model.document.nodes.SemanticNode;
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@ -611,7 +612,7 @@ rule "PII.10.1: Redact study director abbreviation (vertebrate study)"
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// Rule unit: PII.11
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rule "PII.11.0: Redact On behalf of Sequani Ltd.:"
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when
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$section: Section(!hasTables(), containsString("On behalf of Sequani Ltd.: Name Title"))
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$section: SuperSection(!hasTables(), containsString("On behalf of Sequani Ltd.: Name Title"))
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then
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entityCreationService.betweenStrings("On behalf of Sequani Ltd.: Name Title", "On behalf of", "PII", EntityType.ENTITY, $section)
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.forEach(authorEntity -> authorEntity.redact("PII.11.0", "On behalf of Sequani Ltd.: Name Title was found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
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@ -22,6 +22,7 @@ import com.iqser.red.service.redaction.v1.server.model.document.entity.TextEntit
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import com.iqser.red.service.redaction.v1.server.model.document.entity.MatchedRule
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import com.iqser.red.service.redaction.v1.server.model.document.nodes.*;
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import com.iqser.red.service.redaction.v1.server.model.document.nodes.Section;
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import com.iqser.red.service.redaction.v1.server.model.document.nodes.SuperSection;
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import com.iqser.red.service.redaction.v1.server.model.document.nodes.Table;
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import com.iqser.red.service.redaction.v1.server.model.document.nodes.TableCell;
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import com.iqser.red.service.redaction.v1.server.model.document.nodes.SemanticNode;
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@ -844,7 +845,7 @@ rule "PII.9.3: Redact between \"AUTHOR(S)\" and \"(STUDY) COMPLETION DATE\""
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// Rule unit: PII.11
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rule "PII.11.0: Redact On behalf of Sequani Ltd.:"
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when
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$section: Section(!hasTables(), containsString("On behalf of Sequani Ltd.: Name Title"))
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$section: SuperSection(!hasTables(), containsString("On behalf of Sequani Ltd.: Name Title"))
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then
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entityCreationService.betweenStrings("On behalf of Sequani Ltd.: Name Title", "On behalf of", "PII", EntityType.ENTITY, $section)
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.forEach(authorEntity -> authorEntity.redact("PII.11.0", "On behalf of Sequani Ltd.: Name Title was found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
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@ -388,6 +388,27 @@ rule "X.2.0: Remove Entity of type ENTITY when contained by FALSE_POSITIVE"
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retract($entity)
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end
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rule "X.2.0: Remove Entity of type ENTITY when contained by FALSE_POSITIVE"
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salience 64
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when
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$falsePositive: TextEntity($type: type(), entityType == EntityType.FALSE_POSITIVE, active())
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$entity: TextEntity(containedBy($falsePositive), type() == $type, (entityType == EntityType.ENTITY), !hasManualChanges())
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then
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$entity.remove("X.2.0", "remove Entity of type ENTITY when contained by FALSE_POSITIVE");
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retract($entity)
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end
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rule "X.2.1: Remove Entity of type HINT when contained by FALSE_POSITIVE"
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salience 64
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when
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$falsePositive: TextEntity($type: type(), entityType == EntityType.FALSE_POSITIVE, active())
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$entity: TextEntity(containedBy($falsePositive), type() == $type, (entityType == EntityType.HINT), !hasManualChanges())
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then
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$entity.getIntersectingNodes().forEach(node -> update(node));
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$entity.remove("X.2.1", "remove Entity of type ENTITY when contained by FALSE_POSITIVE");
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retract($entity)
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end
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rule "X.2.1: Remove Entity of type HINT when contained by FALSE_POSITIVE"
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salience 64
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when
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File diff suppressed because one or more lines are too long
@ -4,7 +4,13 @@ import com.iqser.red.service.redaction.v1.server.logger.RulesLogger;
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global RulesLogger logger
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//------------------------------------ queries ------------------------------------
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//------------------------------------ LOG rules ------------------------------------
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// Rule unit: LOG.0
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rule "LOG.0.0: Test log info"
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salience 1
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when
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@ -27,4 +33,4 @@ rule "LOG.0.2: Test log error"
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then
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String result = null;
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result.toString();
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end
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end
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@ -22,6 +22,7 @@ import com.iqser.red.service.redaction.v1.server.model.document.entity.TextEntit
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import com.iqser.red.service.redaction.v1.server.model.document.entity.MatchedRule
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import com.iqser.red.service.redaction.v1.server.model.document.nodes.*;
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.nodes.Section;
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.nodes.SuperSection;
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.nodes.Table;
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.nodes.TableCell;
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.nodes.SemanticNode;
|
||||
@ -420,7 +421,6 @@ rule "PII.3.2: Redact telephone numbers by RegEx (vertebrate study)"
|
||||
.forEach(entity -> entity.redact("PII.3.2", "Telephone number found by regex", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
|
||||
end
|
||||
|
||||
|
||||
rule "PII.3.4: Redact telephone numbers by RegEx (Non vertebrate study)"
|
||||
when
|
||||
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
|
||||
@ -593,7 +593,7 @@ rule "PII.10.1: Redact study director abbreviation (vertebrate study)"
|
||||
// Rule unit: PII.11
|
||||
rule "PII.11.0: Redact On behalf of Sequani Ltd.:"
|
||||
when
|
||||
$section: Section(!hasTables(), containsString("On behalf of Sequani Ltd.: Name Title"))
|
||||
$section: SuperSection(!hasTables(), containsString("On behalf of Sequani Ltd.: Name Title"))
|
||||
then
|
||||
entityCreationService.betweenStrings("On behalf of Sequani Ltd.: Name Title", "On behalf of", "PII", EntityType.ENTITY, $section)
|
||||
.forEach(authorEntity -> authorEntity.redact("PII.11.0", "On behalf of Sequani Ltd.: Name Title was found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
|
||||
@ -901,7 +901,6 @@ rule "X.2.0: Remove Entity of type ENTITY when contained by FALSE_POSITIVE"
|
||||
retract($entity)
|
||||
end
|
||||
|
||||
|
||||
rule "X.2.1: Remove Entity of type HINT when contained by FALSE_POSITIVE"
|
||||
salience 64
|
||||
when
|
||||
@ -1040,7 +1039,6 @@ rule "X.11.1: Remove non manual entity which intersects with a manual entity"
|
||||
retract($nonManualEntity);
|
||||
end
|
||||
|
||||
|
||||
rule "X.11.2: Remove non manual entity which are equal to manual entity"
|
||||
salience 70
|
||||
when
|
||||
|
||||
@ -22,6 +22,7 @@ import com.iqser.red.service.redaction.v1.server.model.document.entity.TextEntit
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.entity.MatchedRule
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.nodes.*;
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.nodes.Section;
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.nodes.SuperSection;
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.nodes.Table;
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.nodes.TableCell;
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.nodes.SemanticNode;
|
||||
@ -1458,7 +1459,7 @@ rule "PII.10.1: Redact study director abbreviation (vertebrate study)"
|
||||
// Rule unit: PII.11
|
||||
rule "PII.11.0: Redact On behalf of Sequani Ltd.:"
|
||||
when
|
||||
$section: Section(!hasTables(), containsString("On behalf of Sequani Ltd.: Name Title"))
|
||||
$section: SuperSection(!hasTables(), containsString("On behalf of Sequani Ltd.: Name Title"))
|
||||
then
|
||||
entityCreationService.betweenStrings("On behalf of Sequani Ltd.: Name Title", "On behalf of", "PII", EntityType.ENTITY, $section)
|
||||
.forEach(authorEntity -> authorEntity.redact("PII.11.0", "On behalf of Sequani Ltd.: Name Title was found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
|
||||
|
||||
Loading…
x
Reference in New Issue
Block a user