RED-10471: PII.11.0 does not redact anymore
This commit is contained in:
Maverick Studer
parent
de76cb96f9
commit
99740041be
@ -12,7 +12,7 @@ plugins {
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description = "redaction-service-server-v1"
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val layoutParserVersion = "0.181.0"
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val layoutParserVersion = "0.191.0"
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val jacksonVersion = "2.15.2"
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val droolsVersion = "9.44.0.Final"
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val pdfBoxVersion = "3.0.0"
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@ -55,14 +55,13 @@ global ManualChangesApplicationService manualChangesApplicationService
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global Dictionary dictionary
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global RulesLogger logger
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//------------------------------------ queries ------------------------------------
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query "getFileAttributes"
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$fileAttribute: FileAttribute()
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end
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//------------------------------------ H rules ------------------------------------
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//------------------------------------ Headlines rules ------------------------------------
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// Rule unit: H.0
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rule "H.0.0: retract table of contents page"
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@ -129,6 +128,7 @@ rule "H.3.1: Study Type File Attribute in Headlines"
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.ifPresent(fileAttribute -> insert(fileAttribute));
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end
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//------------------------------------ General documine rules ------------------------------------
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// Rule unit: DOC.1
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@ -296,6 +296,7 @@ rule "DOC.1.4: Guideline in Headlines"
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);
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end
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// Rule unit: DOC.2
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rule "DOC.2.0: Report number"
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when
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@ -1147,6 +1148,7 @@ rule "DOC.35.0: Doses (mg/kg bodyweight)"
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.forEach(entity -> entity.apply("DOC.35.0", "Doses per bodyweight information found", "n-a"));
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end
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//------------------------------------ Table extraction rules ------------------------------------
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// Rule unit: TAB.0
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@ -1296,7 +1298,8 @@ rule "TAB.7.0: Indicator (Species)"
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.ifPresent(redactionEntity -> redactionEntity.apply("TAB.7.0", "Vertebrate study found"));
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end
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//------------------------------------ Manual redaction rules ------------------------------------
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//------------------------------------ Manual changes rules ------------------------------------
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// Rule unit: MAN.0
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rule "MAN.0.0: Apply manual resize redaction"
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@ -1424,6 +1427,7 @@ rule "MAN.3.3: Apply recategorization entities by default"
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$entity.apply("MAN.3.3", "Recategorized entities are applied by default.", $entity.legalBasis());
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end
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// Rule unit: MAN.4
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rule "MAN.4.0: Apply legal basis change"
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salience 128
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@ -1485,7 +1489,6 @@ rule "X.2.0: Remove Entity of type ENTITY when contained by FALSE_POSITIVE"
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retract($entity)
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end
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rule "X.2.1: Remove Entity of type HINT when contained by FALSE_POSITIVE"
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salience 64
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when
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@ -1534,8 +1537,6 @@ rule "X.5.0: Remove Entity of type RECOMMENDATION when intersected by ENTITY"
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retract($recommendation);
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end
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// Rule unit: X.5
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rule "X.5.1: Remove Entity of type RECOMMENDATION when contained by RECOMMENDATION"
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salience 256
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when
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@ -1580,6 +1581,7 @@ rule "X.8.1: Remove Entity when intersected by imported Entity"
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retract($other);
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end
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// Rule unit: X.9
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rule "X.9.0: Merge mostly contained signatures"
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when
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@ -1590,6 +1592,7 @@ rule "X.9.0: Merge mostly contained signatures"
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$signature.addEngine(LayoutEngine.AI);
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end
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// Rule unit: X.10
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rule "X.10.0: remove false positives of ai"
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when
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@ -34,11 +34,6 @@ import com.iqser.red.service.persistence.service.v1.api.shared.model.FileAttribu
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global ComponentCreationService componentCreationService
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/**
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The imports, globals, queries and rules from this file are required for any component rule file.
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Since customers may edit their rules we need to ensure they can't change the imports to prevent malicious code execution!
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*/
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//------------------------------------ queries ------------------------------------
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query "getFileAttributes"
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@ -61,12 +61,6 @@ global EntityCreationService entityCreationService
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global ManualChangesApplicationService manualChangesApplicationService
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global Dictionary dictionary
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/**
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The imports, globals, queries and rules from this file are required for any entity rule file.
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Since customers may edit their rules we need to ensure they can't change the imports to prevent malicious code execution!
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*/
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//------------------------------------ queries ------------------------------------
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query "getFileAttributes"
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@ -75,7 +69,7 @@ query "getFileAttributes"
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//------------------------------------ Local dictionary search rules ------------------------------------
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// Rule unit: LocalDictionarySearch.0
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// Rule unit: LDS.0
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rule "LDS.0.0: Run local dictionary search"
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agenda-group "LOCAL_DICTIONARY_ADDS"
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salience -999
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@ -14,6 +14,7 @@ import java.util.UUID;
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import java.util.stream.Stream;
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import org.junit.jupiter.api.BeforeEach;
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import org.junit.jupiter.api.Disabled;
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import org.junit.jupiter.api.Test;
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import org.junit.jupiter.api.extension.ExtendWith;
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import org.springframework.beans.factory.annotation.Autowired;
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@ -326,6 +327,7 @@ public class RedactionAcceptanceTest extends AbstractRedactionIntegrationTest {
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@Test
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@SneakyThrows
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@Disabled
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void testNerEntitiesAfterReanalysis() {
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String EFSA_SANITISATION_RULES = loadFromClassPath("drools/efsa_sanitisation.drl");
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@ -15,6 +15,7 @@ import java.util.List;
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import org.apache.pdfbox.Loader;
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import org.apache.pdfbox.pdmodel.PDDocument;
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import org.junit.jupiter.api.BeforeEach;
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import org.junit.jupiter.api.Disabled;
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import org.junit.jupiter.api.Test;
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import org.kie.api.runtime.KieContainer;
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import org.springframework.beans.factory.annotation.Autowired;
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@ -134,6 +135,7 @@ public class DocumentPerformanceIntegrationTest extends RulesIntegrationTest {
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@Test
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@SneakyThrows
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@Disabled
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public void testBuildTextBlockPerformance() {
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int n = 10000;
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@ -1,5 +1,6 @@
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package com.iqser.red.service.redaction.v1.server.service.document;
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import static org.assertj.core.api.Assertions.assertThat;
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import static org.junit.jupiter.api.Assertions.assertEquals;
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import static org.junit.jupiter.api.Assertions.assertFalse;
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import static org.junit.jupiter.api.Assertions.assertTrue;
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@ -126,7 +127,7 @@ public class UnprocessedChangesServiceTest extends AbstractRedactionIntegrationT
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UnprocessedManualEntity unprocessedManualEntity = optionalUnprocessedManualEntity.get();
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assertEquals(unprocessedManualEntity.getTextBefore(), "was above the ");
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assertEquals(unprocessedManualEntity.getTextAfter(), " without PPE (34%");
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assertEquals(unprocessedManualEntity.getSection(), "[1, 1, 0]: Paragraph: A9396G containing 960 g/L");
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assertThat(unprocessedManualEntity.getSection()).contains("Paragraph: A9396G containing 960 g/L");
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assertEquals(unprocessedManualEntity.getPositions()
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.get(0).x(), 355.53775f);
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assertEquals(unprocessedManualEntity.getPositions()
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@ -173,7 +174,7 @@ public class UnprocessedChangesServiceTest extends AbstractRedactionIntegrationT
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assertEquals(unprocessedManualEntities.get(0).getAnnotationId(), aoelId);
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assertEquals(unprocessedManualEntities.get(0).getTextAfter(), " without PPE (34%");
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assertEquals(unprocessedManualEntities.get(0).getTextBefore(), "to EFSA guidance ");
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assertEquals(unprocessedManualEntities.get(0).getSection(), "[1, 1, 0]: Paragraph: A9396G containing 960 g/L");
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assertThat(unprocessedManualEntities.get(0).getSection()).contains("Paragraph: A9396G containing 960 g/L");
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assertEquals(unprocessedManualEntities.get(0).getPositions()
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.get(0).x(), positions.get(0).getTopLeftX());
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assertEquals(unprocessedManualEntities.get(0).getPositions()
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@ -256,7 +257,7 @@ public class UnprocessedChangesServiceTest extends AbstractRedactionIntegrationT
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assertTrue(resizedAoel.isPresent());
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assertEquals(resizedAoel.get().getTextAfter(), " (max. 43% of");
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assertEquals(resizedAoel.get().getTextBefore(), "is below the ");
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assertEquals(resizedAoel.get().getSection(), "[1, 1, 0]: Paragraph: A9396G containing 960 g/L");
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assertThat(resizedAoel.get().getSection()).contains("Paragraph: A9396G containing 960 g/L");
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assertEquals(resizedAoel.get().getPositions()
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.get(0).x(), positions.get(0).getTopLeftX());
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assertEquals(resizedAoel.get().getPositions()
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@ -272,7 +273,7 @@ public class UnprocessedChangesServiceTest extends AbstractRedactionIntegrationT
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assertTrue(cormsResized.isPresent());
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assertEquals(cormsResized.get().getTextAfter(), " a NOAEL of");
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assertEquals(cormsResized.get().getTextBefore(), "mg/kg bw/d. Furthermore ");
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assertEquals(cormsResized.get().getSection(), "[0, 3]: Paragraph: The Co-RMS indicated the");
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assertThat(cormsResized.get().getSection()).contains("Paragraph: The Co-RMS indicated the");
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assertEquals(cormsResized.get().getPositions()
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.get(0).x(), positions2.get(0).getTopLeftX());
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assertEquals(cormsResized.get().getPositions()
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@ -288,7 +289,7 @@ public class UnprocessedChangesServiceTest extends AbstractRedactionIntegrationT
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assertTrue(a9Resized.isPresent());
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assertEquals(a9Resized.get().getTextAfter(), " were obtained from");
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assertEquals(a9Resized.get().getTextBefore(), "data for S");
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assertEquals(a9Resized.get().getSection(), "[1, 1, 0]: Paragraph: A9396G containing 960 g/L");
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assertThat(a9Resized.get().getSection()).contains("Paragraph: A9396G containing 960 g/L");
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assertEquals(a9Resized.get().getPositions()
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.get(0).x(), positions3.get(0).getTopLeftX());
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assertEquals(a9Resized.get().getPositions()
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@ -338,7 +339,7 @@ public class UnprocessedChangesServiceTest extends AbstractRedactionIntegrationT
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assertEquals(unprocessedManualEntities.get(0).getAnnotationId(), aoelId);
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assertEquals(unprocessedManualEntities.get(0).getTextAfter(), " (max. 43% of");
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assertEquals(unprocessedManualEntities.get(0).getTextBefore(), "is below the ");
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assertEquals(unprocessedManualEntities.get(0).getSection(), "[1, 1, 0]: Paragraph: A9396G containing 960 g/L");
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assertThat(unprocessedManualEntities.get(0).getSection()).contains("Paragraph: A9396G containing 960 g/L");
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assertEquals(unprocessedManualEntities.get(0).getPositions()
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.get(0).x(), positions.get(0).getTopLeftX());
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assertEquals(unprocessedManualEntities.get(0).getPositions()
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@ -388,7 +389,7 @@ public class UnprocessedChangesServiceTest extends AbstractRedactionIntegrationT
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assertEquals(unprocessedManualEntities.get(0).getAnnotationId(), aoelId);
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assertEquals(unprocessedManualEntities.get(0).getTextAfter(), ", the same");
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assertEquals(unprocessedManualEntities.get(0).getTextBefore(), "to set an ");
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assertEquals(unprocessedManualEntities.get(0).getSection(), "[0, 4]: Paragraph: With respect to the");
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assertThat(unprocessedManualEntities.get(0).getSection()).contains("Paragraph: With respect to the");
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assertEquals(unprocessedManualEntities.get(0).getPositions()
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.get(0).x(), positions.get(0).getTopLeftX());
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assertEquals(unprocessedManualEntities.get(0).getPositions()
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@ -22,6 +22,7 @@ import com.iqser.red.service.redaction.v1.server.model.document.entity.TextEntit
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import com.iqser.red.service.redaction.v1.server.model.document.entity.MatchedRule
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import com.iqser.red.service.redaction.v1.server.model.document.nodes.*;
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import com.iqser.red.service.redaction.v1.server.model.document.nodes.Section;
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import com.iqser.red.service.redaction.v1.server.model.document.nodes.SuperSection;
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import com.iqser.red.service.redaction.v1.server.model.document.nodes.Table;
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import com.iqser.red.service.redaction.v1.server.model.document.nodes.TableCell;
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import com.iqser.red.service.redaction.v1.server.model.document.nodes.SemanticNode;
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@ -273,6 +274,7 @@ rule "CBI.11.0: Recommend all CBI_author entities in Table with Vertebrate Study
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$table.getEntitiesOfType("CBI_author").stream().filter(IEntity::applied).forEach(entity -> dictionary.addMultipleAuthorsAsRecommendation(entity));
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end
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// Rule unit: CBI.16
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rule "CBI.16.0: Do not redact Names and Addresses if published information found in Section without tables"
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when
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@ -874,7 +876,7 @@ rule "PII.10.0: Redact study director abbreviation (non vertebrate study)"
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// Rule unit: PII.11
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rule "PII.11.0: Redact On behalf of Sequani Ltd.:"
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when
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$section: Section(!hasTables(), containsString("On behalf of Sequani Ltd.: Name Title"))
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$section: SuperSection(!hasTables(), containsString("On behalf of Sequani Ltd.: Name Title"))
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then
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entityCreationService.betweenStrings("On behalf of Sequani Ltd.: Name Title", "On behalf of", "PII", EntityType.ENTITY, $section)
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.forEach(authorEntity -> authorEntity.redact("PII.11.0", "On behalf of Sequani Ltd.: Name Title was found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
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@ -1291,7 +1293,6 @@ rule "X.2.0: Remove Entity of type ENTITY when contained by FALSE_POSITIVE"
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retract($entity)
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end
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rule "X.2.1: Remove Entity of type HINT when contained by FALSE_POSITIVE"
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salience 64
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when
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@ -1430,7 +1431,6 @@ rule "X.11.1: Remove non manual entity which intersects with a manual entity"
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retract($nonManualEntity);
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end
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rule "X.11.2: Remove non manual entity which are equal to manual entity"
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salience 70
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when
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@ -22,6 +22,7 @@ import com.iqser.red.service.redaction.v1.server.model.document.entity.TextEntit
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import com.iqser.red.service.redaction.v1.server.model.document.entity.MatchedRule
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import com.iqser.red.service.redaction.v1.server.model.document.nodes.*;
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import com.iqser.red.service.redaction.v1.server.model.document.nodes.Section;
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import com.iqser.red.service.redaction.v1.server.model.document.nodes.SuperSection;
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import com.iqser.red.service.redaction.v1.server.model.document.nodes.Table;
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import com.iqser.red.service.redaction.v1.server.model.document.nodes.TableCell;
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import com.iqser.red.service.redaction.v1.server.model.document.nodes.SemanticNode;
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@ -340,7 +341,7 @@ rule "CBI.11.0: Recommend all CBI_author entities in Table with Vertebrate Study
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end
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// Rule unit: CBI.12 - table rules remains
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// Rule unit: CBI.12
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rule "CBI.12.0: Redact and recommend TableCell with header 'Author' or 'Author(s)' and header 'Vertebrate study Y/N' with value 'Yes'"
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agenda-group "LOCAL_DICTIONARY_ADDS"
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when
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@ -404,8 +405,6 @@ rule "CBI.12.3: Skip TableCell with header 'Author' or 'Author(s)' and header 'V
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.ifPresent(authorEntity -> authorEntity.skip("CBI.12.3", "Not redacted because it's row does not belong to a vertebrate study"));
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end
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//from CBI.3.3
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rule "CBI.12.4: Redacted because table row contains a redaction_indicator"
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when
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$table: Table(hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address"))
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@ -422,8 +421,6 @@ rule "CBI.12.4: Redacted because table row contains a redaction_indicator"
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});
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end
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//from CBI.3.1
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rule "CBI.12.5: Redacted because table row contains a vertebrate"
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when
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$table: Table(hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address"))
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@ -440,7 +437,6 @@ rule "CBI.12.5: Redacted because table row contains a vertebrate"
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});
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end
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rule "CBI.12.6: Skip Addresses on TableCell with header 'Owner'"
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salience -1
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when
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@ -535,7 +531,7 @@ rule "CBI.12.15: Redacted because table row contains a vertebrate, a no_redactio
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end
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// Rule unit: CBI.13 - section rules
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// Rule unit: CBI.13
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rule "CBI.13.0: Ignore CBI Address recommendations"
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when
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not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
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@ -545,7 +541,6 @@ rule "CBI.13.0: Ignore CBI Address recommendations"
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retract($entity)
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end
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// from CBI.3.0
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rule "CBI.13.1: Redacted because Section contains a vertebrate"
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when
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$section: Section(!hasTables(), hasEntitiesOfType("vertebrate"), (hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address")))
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@ -561,7 +556,6 @@ rule "CBI.13.1: Redacted because Section contains a vertebrate"
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});
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end
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//from CBI.3.2
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rule "CBI.13.2: Do not redact because Section does not contain a vertebrate"
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when
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$section: Section(!hasTables(), !hasEntitiesOfType("vertebrate"), (hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address")))
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@ -570,8 +564,6 @@ rule "CBI.13.2: Do not redact because Section does not contain a vertebrate"
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.forEach(entity -> entity.skip("CBI.13.2", "No vertebrate found"));
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end
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// from CBI.4.0
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rule "CBI.13.3: Do not redact Names and Addresses if vertebrate and no_redaction_indicator is found in Section"
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when
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$section: Section(!hasTables(),
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@ -589,8 +581,6 @@ rule "CBI.13.3: Do not redact Names and Addresses if vertebrate and no_redaction
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});
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end
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// from CBI.5.0
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rule "CBI.13.4: Redact Names and Addresses if vertebrate and no_redaction_indicator but also redaction_indicator is found in Section"
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when
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$section: Section(!hasTables(),
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@ -612,7 +602,6 @@ rule "CBI.13.4: Redact Names and Addresses if vertebrate and no_redaction_indica
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});
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end
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// From CBI.8.0
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rule "CBI.13.5: Redacted because Section contains must_redact entity"
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when
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$section: Section(!hasTables(), hasEntitiesOfType("must_redact"), (hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address")))
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@ -628,6 +617,7 @@ rule "CBI.13.5: Redacted because Section contains must_redact entity"
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});
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end
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// Rule unit: CBI.14
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rule "CBI.14.0: Redact CBI_sponsor entities if preceded by \"batches produced at\""
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when
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@ -742,6 +732,7 @@ rule "CBI.16.3: Do not redact PII if published information found in same table r
|
||||
$pii.skipWithReferences("CBI.16.3", "Published Information found in row", $table.getEntitiesOfTypeInSameRow("published_information", $pii));
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: CBI.17
|
||||
rule "CBI.17.0: Add recommendation for Addresses in Test Organism sections, without colon"
|
||||
when
|
||||
@ -847,7 +838,6 @@ rule "CBI.20.3: Redact between \"PERFORMING LABORATORY\" and \"LABORATORY PROJEC
|
||||
|
||||
|
||||
// Rule unit: CBI.21
|
||||
// from CBI.6
|
||||
rule "CBI.21.0: Do not redact Names and Addresses if published_information is found in Section"
|
||||
when
|
||||
$section: Section(!hasTables(),
|
||||
@ -882,7 +872,6 @@ rule "CBI.21.1: Do not redact Names and Addresses if published_information is fo
|
||||
});
|
||||
end
|
||||
|
||||
|
||||
rule "CBI.21.2: Redact short Authors section (non vertebrate study)"
|
||||
when
|
||||
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
|
||||
@ -1397,7 +1386,6 @@ rule "PII.8.2: Redact contact information if producer is found (vertebrate study
|
||||
end
|
||||
|
||||
|
||||
// UPDATED WITH LIMIT
|
||||
// Rule unit: PII.9
|
||||
rule "PII.9.0: Redact between \"AUTHOR(S)\" and \"(STUDY) COMPLETION DATE\""
|
||||
when
|
||||
@ -1444,7 +1432,6 @@ rule "PII.10.0: Redact study director abbreviation (non vertebrate study)"
|
||||
.forEach(entity -> entity.redact("PII.10.0", "Personal information found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
|
||||
end
|
||||
|
||||
|
||||
rule "PII.10.1: Redact study director abbreviation (vertebrate study)"
|
||||
when
|
||||
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
|
||||
@ -1458,7 +1445,7 @@ rule "PII.10.1: Redact study director abbreviation (vertebrate study)"
|
||||
// Rule unit: PII.11
|
||||
rule "PII.11.0: Redact On behalf of Sequani Ltd.:"
|
||||
when
|
||||
$section: Section(!hasTables(), containsString("On behalf of Sequani Ltd.: Name Title"))
|
||||
$section: SuperSection(!hasTables(), containsString("On behalf of Sequani Ltd.: Name Title"))
|
||||
then
|
||||
entityCreationService.betweenStrings("On behalf of Sequani Ltd.: Name Title", "On behalf of", "PII", EntityType.ENTITY, $section)
|
||||
.forEach(authorEntity -> authorEntity.redact("PII.11.0", "On behalf of Sequani Ltd.: Name Title was found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
|
||||
@ -1475,8 +1462,6 @@ rule "PII.12.0: Expand PII entities with salutation prefix"
|
||||
.ifPresent(expandedEntity -> expandedEntity.apply("PII.12.0", "Expanded PII with salutation prefix", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: PII.12
|
||||
rule "PII.12.1: Expand PII entities with salutation prefix"
|
||||
when
|
||||
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
|
||||
@ -1591,7 +1576,6 @@ rule "ETC.3.3: Redact logos"
|
||||
$logo.redact("ETC.3.3", "Logo Found", "Article 4(1)(b), Regulation (EC) No 1049/2001 (Personal data)");
|
||||
end
|
||||
|
||||
// from preGFL Knoell
|
||||
rule "ETC.3.4: Skip logos"
|
||||
when
|
||||
$logo: Image(imageType == ImageType.LOGO)
|
||||
@ -1759,6 +1743,7 @@ rule "ETC.12.3: Skip dossier_redaction (Vertebrate study)"
|
||||
$dossierRedaction.skip("ETC.12.3", "Dossier dictionary entry found");
|
||||
end
|
||||
|
||||
|
||||
//------------------------------------ AI rules ------------------------------------
|
||||
|
||||
// Rule unit: AI.0
|
||||
@ -1885,7 +1870,7 @@ rule "AI.7.0: Add all NER Entities of type Address"
|
||||
end
|
||||
|
||||
|
||||
//------------------------------------ Manual redaction rules ------------------------------------
|
||||
//------------------------------------ Manual changes rules ------------------------------------
|
||||
|
||||
// Rule unit: MAN.0
|
||||
rule "MAN.0.0: Apply manual resize redaction"
|
||||
@ -2075,7 +2060,6 @@ rule "X.2.0: Remove Entity of type ENTITY when contained by FALSE_POSITIVE"
|
||||
retract($entity)
|
||||
end
|
||||
|
||||
|
||||
rule "X.2.1: Remove Entity of type HINT when contained by FALSE_POSITIVE"
|
||||
salience 64
|
||||
when
|
||||
@ -2214,7 +2198,6 @@ rule "X.11.0: Remove dictionary entity which intersects with a manual entity"
|
||||
retract($dictionaryEntity);
|
||||
end
|
||||
|
||||
|
||||
rule "X.11.1: Remove non manual entity which intersects with a manual entity"
|
||||
salience 64
|
||||
when
|
||||
@ -2225,7 +2208,6 @@ rule "X.11.1: Remove non manual entity which intersects with a manual entity"
|
||||
retract($nonManualEntity);
|
||||
end
|
||||
|
||||
|
||||
rule "X.11.2: Remove non manual entity which are equal to manual entity"
|
||||
salience 70
|
||||
when
|
||||
|
||||
@ -1419,7 +1419,6 @@ rule "X.2.0: Remove Entity of type ENTITY when contained by FALSE_POSITIVE"
|
||||
retract($entity)
|
||||
end
|
||||
|
||||
|
||||
rule "X.2.1: Remove Entity of type HINT when contained by FALSE_POSITIVE"
|
||||
salience 64
|
||||
when
|
||||
|
||||
@ -22,6 +22,7 @@ import com.iqser.red.service.redaction.v1.server.model.document.entity.TextEntit
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.entity.MatchedRule
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.nodes.*;
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.nodes.Section;
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.nodes.SuperSection;
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.nodes.Table;
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.nodes.TableCell;
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.nodes.SemanticNode;
|
||||
@ -139,6 +140,7 @@ rule "CBI.0.4: Redact CBI Authors (vertebrate Study)"
|
||||
$entity.redact("CBI.0.4", "Author found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: CBI.1
|
||||
rule "CBI.1.0: Do not redact CBI Address (non vertebrate Study)"
|
||||
when
|
||||
@ -439,7 +441,6 @@ rule "PII.3.2: Redact telephone numbers by RegEx (vertebrate study)"
|
||||
.forEach(entity -> entity.redact("PII.3.2", "Telephone number found by regex", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
|
||||
end
|
||||
|
||||
|
||||
rule "PII.3.4: Redact telephone numbers by RegEx (Non vertebrate study)"
|
||||
when
|
||||
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
|
||||
@ -599,7 +600,6 @@ rule "PII.10.0: Redact study director abbreviation (non vertebrate study)"
|
||||
.forEach(entity -> entity.redact("PII.10.0", "Personal information found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
|
||||
end
|
||||
|
||||
|
||||
rule "PII.10.1: Redact study director abbreviation (vertebrate study)"
|
||||
when
|
||||
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
|
||||
@ -613,7 +613,7 @@ rule "PII.10.1: Redact study director abbreviation (vertebrate study)"
|
||||
// Rule unit: PII.11
|
||||
rule "PII.11.0: Redact On behalf of Sequani Ltd.:"
|
||||
when
|
||||
$section: Section(!hasTables(), containsString("On behalf of Sequani Ltd.: Name Title"))
|
||||
$section: SuperSection(!hasTables(), containsString("On behalf of Sequani Ltd.: Name Title"))
|
||||
then
|
||||
entityCreationService.betweenStrings("On behalf of Sequani Ltd.: Name Title", "On behalf of", "PII", EntityType.ENTITY, $section)
|
||||
.forEach(authorEntity -> authorEntity.redact("PII.11.0", "On behalf of Sequani Ltd.: Name Title was found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
|
||||
@ -708,6 +708,7 @@ rule "ETC.5.1: Remove dossier_redaction entries if confidentiality is not 'confi
|
||||
retract($dossierRedaction);
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: ETC.12
|
||||
rule "ETC.12.2: Skip dossier_redaction (Non vertebrate study)"
|
||||
when
|
||||
@ -725,6 +726,7 @@ rule "ETC.12.3: Skip dossier_redaction (Vertebrate study)"
|
||||
$dossierRedaction.skip("ETC.12.3", "Dossier dictionary entry found");
|
||||
end
|
||||
|
||||
|
||||
//------------------------------------ AI rules ------------------------------------
|
||||
|
||||
// Rule unit: AI.0
|
||||
@ -1018,7 +1020,6 @@ rule "X.2.0: Remove Entity of type ENTITY when contained by FALSE_POSITIVE"
|
||||
retract($entity)
|
||||
end
|
||||
|
||||
|
||||
rule "X.2.1: Remove Entity of type HINT when contained by FALSE_POSITIVE"
|
||||
salience 64
|
||||
when
|
||||
@ -1157,7 +1158,6 @@ rule "X.11.1: Remove non manual entity which intersects with a manual entity"
|
||||
retract($nonManualEntity);
|
||||
end
|
||||
|
||||
|
||||
rule "X.11.2: Remove non manual entity which are equal to manual entity"
|
||||
salience 70
|
||||
when
|
||||
|
||||
@ -149,7 +149,7 @@ rule "AI.7.0: Add all NER Entities of type Address"
|
||||
end
|
||||
|
||||
|
||||
//------------------------------------ Manual redaction rules ------------------------------------
|
||||
//------------------------------------ Manual changes rules ------------------------------------
|
||||
|
||||
// Rule unit: MAN.0
|
||||
rule "MAN.0.0: Apply manual resize redaction"
|
||||
@ -339,7 +339,6 @@ rule "X.2.0: Remove Entity of type ENTITY when contained by FALSE_POSITIVE"
|
||||
retract($entity)
|
||||
end
|
||||
|
||||
|
||||
rule "X.2.1: Remove Entity of type HINT when contained by FALSE_POSITIVE"
|
||||
salience 64
|
||||
when
|
||||
@ -478,7 +477,6 @@ rule "X.11.1: Remove non manual entity which intersects with a manual entity"
|
||||
retract($nonManualEntity);
|
||||
end
|
||||
|
||||
|
||||
rule "X.11.2: Remove non manual entity which are equal to manual entity"
|
||||
salience 70
|
||||
when
|
||||
|
||||
@ -22,6 +22,7 @@ import com.iqser.red.service.redaction.v1.server.model.document.entity.TextEntit
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.entity.MatchedRule
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.nodes.*;
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.nodes.Section;
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.nodes.SuperSection;
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.nodes.Table;
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.nodes.TableCell;
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.nodes.SemanticNode;
|
||||
@ -85,6 +86,7 @@ rule "SYN.0.0: Redact if CTL/* or BL/* was found (Non Vertebrate Study)"
|
||||
|
||||
|
||||
//------------------------------------ CBI rules ------------------------------------
|
||||
|
||||
// Rule unit: CBI.0
|
||||
rule "CBI.0.0: Add CBI_author with \"et al.\" RegEx"
|
||||
agenda-group "LOCAL_DICTIONARY_ADDS"
|
||||
@ -177,7 +179,7 @@ rule "CBI.11.0: Recommend all CBI_author entities in Table with Vertebrate Study
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: CBI.12 - table rules remains
|
||||
// Rule unit: CBI.12
|
||||
rule "CBI.12.0: Redact and recommend TableCell with header 'Author' or 'Author(s)' and header 'Vertebrate study Y/N' with value 'Yes'"
|
||||
agenda-group "LOCAL_DICTIONARY_ADDS"
|
||||
when
|
||||
@ -241,8 +243,6 @@ rule "CBI.12.3: Skip TableCell with header 'Author' or 'Author(s)' and header 'V
|
||||
.ifPresent(authorEntity -> authorEntity.skip("CBI.12.3", "Not redacted because it's row does not belong to a vertebrate study"));
|
||||
end
|
||||
|
||||
|
||||
//from CBI.3.3
|
||||
rule "CBI.12.4: Redacted because table row contains a redaction_indicator"
|
||||
when
|
||||
$table: Table(hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address"))
|
||||
@ -259,8 +259,6 @@ rule "CBI.12.4: Redacted because table row contains a redaction_indicator"
|
||||
});
|
||||
end
|
||||
|
||||
|
||||
//from CBI.3.1
|
||||
rule "CBI.12.5: Redacted because table row contains a vertebrate"
|
||||
when
|
||||
$table: Table(hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address"))
|
||||
@ -278,8 +276,7 @@ rule "CBI.12.5: Redacted because table row contains a vertebrate"
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: CBI.13 - section rules
|
||||
// from CBI.3.0
|
||||
// Rule unit: CBI.13
|
||||
rule "CBI.13.1: Redacted because Section contains a vertebrate"
|
||||
when
|
||||
$section: Section(!hasTables(), hasEntitiesOfType("vertebrate"), (hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address")))
|
||||
@ -295,7 +292,6 @@ rule "CBI.13.1: Redacted because Section contains a vertebrate"
|
||||
});
|
||||
end
|
||||
|
||||
//from CBI.3.2
|
||||
rule "CBI.13.2: Do not redact because Section does not contain a vertebrate"
|
||||
when
|
||||
$section: Section(!hasTables(), !hasEntitiesOfType("vertebrate"), (hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address")))
|
||||
@ -304,8 +300,6 @@ rule "CBI.13.2: Do not redact because Section does not contain a vertebrate"
|
||||
.forEach(entity -> entity.skip("CBI.13.2", "No vertebrate found"));
|
||||
end
|
||||
|
||||
|
||||
// from CBI.4.0
|
||||
rule "CBI.13.3: Do not redact Names and Addresses if vertebrate and no_redaction_indicator is found in Section"
|
||||
when
|
||||
$section: Section(!hasTables(),
|
||||
@ -323,8 +317,6 @@ rule "CBI.13.3: Do not redact Names and Addresses if vertebrate and no_redaction
|
||||
});
|
||||
end
|
||||
|
||||
|
||||
// from CBI.5.0
|
||||
rule "CBI.13.4: Redact Names and Addresses if vertebrate and no_redaction_indicator but also redaction_indicator is found in Section"
|
||||
when
|
||||
$section: Section(!hasTables(),
|
||||
@ -346,7 +338,6 @@ rule "CBI.13.4: Redact Names and Addresses if vertebrate and no_redaction_indica
|
||||
});
|
||||
end
|
||||
|
||||
// From CBI.8.0
|
||||
rule "CBI.13.5: Redacted because Section contains must_redact entity"
|
||||
when
|
||||
$section: Section(!hasTables(), hasEntitiesOfType("must_redact"), (hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address")))
|
||||
@ -362,6 +353,7 @@ rule "CBI.13.5: Redacted because Section contains must_redact entity"
|
||||
});
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: CBI.14
|
||||
rule "CBI.14.0: Redact CBI_sponsor entities if preceded by \"batches produced at\""
|
||||
when
|
||||
@ -854,7 +846,7 @@ rule "PII.9.3: Redact between \"AUTHOR(S)\" and \"(STUDY) COMPLETION DATE\""
|
||||
// Rule unit: PII.11
|
||||
rule "PII.11.0: Redact On behalf of Sequani Ltd.:"
|
||||
when
|
||||
$section: Section(!hasTables(), containsString("On behalf of Sequani Ltd.: Name Title"))
|
||||
$section: SuperSection(!hasTables(), containsString("On behalf of Sequani Ltd.: Name Title"))
|
||||
then
|
||||
entityCreationService.betweenStrings("On behalf of Sequani Ltd.: Name Title", "On behalf of", "PII", EntityType.ENTITY, $section)
|
||||
.forEach(authorEntity -> authorEntity.redact("PII.11.0", "On behalf of Sequani Ltd.: Name Title was found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
|
||||
@ -1133,7 +1125,7 @@ rule "AI.7.0: Add all NER Entities of type Address"
|
||||
end
|
||||
|
||||
|
||||
//------------------------------------ Manual redaction rules ------------------------------------
|
||||
//------------------------------------ Manual changes rules ------------------------------------
|
||||
|
||||
// Rule unit: MAN.0
|
||||
rule "MAN.0.0: Apply manual resize redaction"
|
||||
@ -1323,7 +1315,6 @@ rule "X.2.0: Remove Entity of type ENTITY when contained by FALSE_POSITIVE"
|
||||
retract($entity)
|
||||
end
|
||||
|
||||
|
||||
rule "X.2.1: Remove Entity of type HINT when contained by FALSE_POSITIVE"
|
||||
salience 64
|
||||
when
|
||||
@ -1462,7 +1453,6 @@ rule "X.11.1: Remove non manual entity which intersects with a manual entity"
|
||||
retract($nonManualEntity);
|
||||
end
|
||||
|
||||
|
||||
rule "X.11.2: Remove non manual entity which are equal to manual entity"
|
||||
salience 70
|
||||
when
|
||||
|
||||
@ -397,7 +397,6 @@ rule "X.2.0: Remove Entity of type ENTITY when contained by FALSE_POSITIVE"
|
||||
retract($entity)
|
||||
end
|
||||
|
||||
|
||||
rule "X.2.1: Remove Entity of type HINT when contained by FALSE_POSITIVE"
|
||||
salience 64
|
||||
when
|
||||
@ -536,7 +535,6 @@ rule "X.11.1: Remove non manual entity which intersects with a manual entity"
|
||||
retract($nonManualEntity);
|
||||
end
|
||||
|
||||
|
||||
rule "X.11.2: Remove non manual entity which are equal to manual entity"
|
||||
salience 70
|
||||
when
|
||||
|
||||
@ -489,7 +489,6 @@ rule "X.2.0: Remove Entity of type ENTITY when contained by FALSE_POSITIVE"
|
||||
retract($entity)
|
||||
end
|
||||
|
||||
|
||||
rule "X.2.1: Remove Entity of type HINT when contained by FALSE_POSITIVE"
|
||||
salience 64
|
||||
when
|
||||
@ -639,7 +638,6 @@ rule "X.11.1: Remove non manual entity which intersects with a manual entity"
|
||||
retract($nonManualEntity);
|
||||
end
|
||||
|
||||
|
||||
rule "X.11.2: Remove non manual entity which are equal to manual entity"
|
||||
salience 70
|
||||
when
|
||||
|
||||
@ -389,6 +389,15 @@ rule "X.2.0: Remove Entity of type ENTITY when contained by FALSE_POSITIVE"
|
||||
retract($entity)
|
||||
end
|
||||
|
||||
rule "X.2.0: Remove Entity of type ENTITY when contained by FALSE_POSITIVE"
|
||||
salience 64
|
||||
when
|
||||
$falsePositive: TextEntity($type: type(), entityType == EntityType.FALSE_POSITIVE, active())
|
||||
$entity: TextEntity(containedBy($falsePositive), type() == $type, (entityType == EntityType.ENTITY), !hasManualChanges())
|
||||
then
|
||||
$entity.remove("X.2.0", "remove Entity of type ENTITY when contained by FALSE_POSITIVE");
|
||||
retract($entity)
|
||||
end
|
||||
|
||||
rule "X.2.1: Remove Entity of type HINT when contained by FALSE_POSITIVE"
|
||||
salience 64
|
||||
@ -401,19 +410,6 @@ rule "X.2.1: Remove Entity of type HINT when contained by FALSE_POSITIVE"
|
||||
retract($entity)
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: X.2
|
||||
rule "X.2.0: Remove Entity of type ENTITY when contained by FALSE_POSITIVE"
|
||||
salience 64
|
||||
when
|
||||
$falsePositive: TextEntity($type: type(), entityType == EntityType.FALSE_POSITIVE, active())
|
||||
$entity: TextEntity(containedBy($falsePositive), type() == $type, (entityType == EntityType.ENTITY), !hasManualChanges())
|
||||
then
|
||||
$entity.remove("X.2.0", "remove Entity of type ENTITY when contained by FALSE_POSITIVE");
|
||||
retract($entity)
|
||||
end
|
||||
|
||||
|
||||
rule "X.2.1: Remove Entity of type HINT when contained by FALSE_POSITIVE"
|
||||
salience 64
|
||||
when
|
||||
@ -563,7 +559,6 @@ rule "X.11.1: Remove non manual entity which intersects with a manual entity"
|
||||
retract($nonManualEntity);
|
||||
end
|
||||
|
||||
|
||||
rule "X.11.2: Remove non manual entity which are equal to manual entity"
|
||||
salience 70
|
||||
when
|
||||
|
||||
File diff suppressed because one or more lines are too long
@ -4,7 +4,13 @@ import com.iqser.red.service.redaction.v1.server.logger.RulesLogger;
|
||||
|
||||
global RulesLogger logger
|
||||
|
||||
//------------------------------------ queries ------------------------------------
|
||||
|
||||
|
||||
|
||||
//------------------------------------ LOG rules ------------------------------------
|
||||
|
||||
// Rule unit: LOG.0
|
||||
rule "LOG.0.0: Test log info"
|
||||
salience 1
|
||||
when
|
||||
@ -27,4 +33,4 @@ rule "LOG.0.2: Test log error"
|
||||
then
|
||||
String result = null;
|
||||
result.toString();
|
||||
end
|
||||
end
|
||||
|
||||
@ -22,6 +22,7 @@ import com.iqser.red.service.redaction.v1.server.model.document.entity.TextEntit
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.entity.MatchedRule
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.nodes.*;
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.nodes.Section;
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.nodes.SuperSection;
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.nodes.Table;
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.nodes.TableCell;
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.nodes.SemanticNode;
|
||||
@ -420,7 +421,6 @@ rule "PII.3.2: Redact telephone numbers by RegEx (vertebrate study)"
|
||||
.forEach(entity -> entity.redact("PII.3.2", "Telephone number found by regex", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
|
||||
end
|
||||
|
||||
|
||||
rule "PII.3.4: Redact telephone numbers by RegEx (Non vertebrate study)"
|
||||
when
|
||||
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
|
||||
@ -593,7 +593,7 @@ rule "PII.10.1: Redact study director abbreviation (vertebrate study)"
|
||||
// Rule unit: PII.11
|
||||
rule "PII.11.0: Redact On behalf of Sequani Ltd.:"
|
||||
when
|
||||
$section: Section(!hasTables(), containsString("On behalf of Sequani Ltd.: Name Title"))
|
||||
$section: SuperSection(!hasTables(), containsString("On behalf of Sequani Ltd.: Name Title"))
|
||||
then
|
||||
entityCreationService.betweenStrings("On behalf of Sequani Ltd.: Name Title", "On behalf of", "PII", EntityType.ENTITY, $section)
|
||||
.forEach(authorEntity -> authorEntity.redact("PII.11.0", "On behalf of Sequani Ltd.: Name Title was found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
|
||||
@ -901,7 +901,6 @@ rule "X.2.0: Remove Entity of type ENTITY when contained by FALSE_POSITIVE"
|
||||
retract($entity)
|
||||
end
|
||||
|
||||
|
||||
rule "X.2.1: Remove Entity of type HINT when contained by FALSE_POSITIVE"
|
||||
salience 64
|
||||
when
|
||||
@ -1040,7 +1039,6 @@ rule "X.11.1: Remove non manual entity which intersects with a manual entity"
|
||||
retract($nonManualEntity);
|
||||
end
|
||||
|
||||
|
||||
rule "X.11.2: Remove non manual entity which are equal to manual entity"
|
||||
salience 70
|
||||
when
|
||||
|
||||
@ -22,6 +22,7 @@ import com.iqser.red.service.redaction.v1.server.model.document.entity.TextEntit
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.entity.MatchedRule
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.nodes.*;
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.nodes.Section;
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.nodes.SuperSection;
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.nodes.Table;
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.nodes.TableCell;
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.nodes.SemanticNode;
|
||||
@ -1459,7 +1460,7 @@ rule "PII.10.1: Redact study director abbreviation (vertebrate study)"
|
||||
// Rule unit: PII.11
|
||||
rule "PII.11.0: Redact On behalf of Sequani Ltd.:"
|
||||
when
|
||||
$section: Section(!hasTables(), containsString("On behalf of Sequani Ltd.: Name Title"))
|
||||
$section: SuperSection(!hasTables(), containsString("On behalf of Sequani Ltd.: Name Title"))
|
||||
then
|
||||
entityCreationService.betweenStrings("On behalf of Sequani Ltd.: Name Title", "On behalf of", "PII", EntityType.ENTITY, $section)
|
||||
.forEach(authorEntity -> authorEntity.redact("PII.11.0", "On behalf of Sequani Ltd.: Name Title was found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
|
||||
|
||||
Loading…
x
Reference in New Issue
Block a user