Merge branch 'master' of ssh://git.iqser.com:2222/red/redaction-service into Test

 Conflicts:

	redaction-service-v1/redaction-service-server-v1/pom.xml

bamboo-specs/src/main/java/buildjob/PlanSpec.java

@@ -1,7 +1,5 @@
 package buildjob;
 
-import static com.atlassian.bamboo.specs.builders.task.TestParserTask.createJUnitParserTask;
-
 import com.atlassian.bamboo.specs.api.BambooSpec;
 import com.atlassian.bamboo.specs.api.builders.BambooKey;
 import com.atlassian.bamboo.specs.api.builders.docker.DockerConfiguration;
@@ -24,6 +22,8 @@ import com.atlassian.bamboo.specs.builders.trigger.BitbucketServerTrigger;
 import com.atlassian.bamboo.specs.model.task.InjectVariablesScope;
 import com.atlassian.bamboo.specs.util.BambooServer;
 
+import static com.atlassian.bamboo.specs.builders.task.TestParserTask.createJUnitParserTask;
+
 /**
  * Plan configuration for Bamboo.
  * Learn more on: <a href="https://confluence.atlassian.com/display/BAMBOO/Bamboo+Specs">https://confluence.atlassian.com/display/BAMBOO/Bamboo+Specs</a>
@@ -33,6 +33,8 @@ public class PlanSpec {
 
     private static final String SERVICE_NAME = "redaction-service";
 
+    private static final String JVM_ARGS =" -Xmx4g -XX:+ExitOnOutOfMemoryError -XX:SurvivorRatio=2 -XX:NewRatio=1 -XX:InitialTenuringThreshold=16 -XX:MaxTenuringThreshold=16 -XX:InitiatingHeapOccupancyPercent=35 ";
+
     private static final String SERVICE_KEY = SERVICE_NAME.toUpperCase().replaceAll("-", "");
 
     /**
@@ -82,9 +84,12 @@ public class PlanSpec {
                                                 .checkoutItems(new CheckoutItem().defaultRepository()),
                                         new ScriptTask()
                                                 .description("Build")
+                                                .environmentVariables("MAVEN_OPTS="+JVM_ARGS)
                                                 .inlineBody("#!/bin/bash\n" +
                                                         "set -e\n" +
 
+                                                        "export MAVEN_OPTS=\"$MAVEN_OPTS "+JVM_ARGS +"\"\n" +
+
                                                         "if [[ \"${bamboo.version_tag}\" != \"dev\" ]]; then ${bamboo_capability_system_builder_mvn3_Maven_3}/bin/mvn --no-transfer-progress -f ${bamboo_build_working_directory}/" + SERVICE_NAME + "-v1/pom.xml versions:set  -DnewVersion=${bamboo.version_tag}; fi\n" +
                                                         "if [[ \"${bamboo.version_tag}\" != \"dev\" ]]; then ${bamboo_capability_system_builder_mvn3_Maven_3}/bin/mvn --no-transfer-progress -f ${bamboo_build_working_directory}/" + SERVICE_NAME + "-image-v1/pom.xml versions:set  -DnewVersion=${bamboo.version_tag}; fi\n" +
 

redaction-service-v1/pom.xml

@@ -5,7 +5,7 @@
     <parent>
         <artifactId>platform-dependency</artifactId>
         <groupId>com.iqser.red</groupId>
-        <version>1.0.8</version>
+        <version>1.1.2</version>
     </parent>
     <modelVersion>4.0.0</modelVersion>
 
@@ -32,7 +32,7 @@
             <dependency>
                 <groupId>com.iqser.red</groupId>
                 <artifactId>platform-commons-dependency</artifactId>
-                <version>1.2.5</version>
+                <version>1.3.1</version>
                 <scope>import</scope>
                 <type>pom</type>
             </dependency>
@@ -52,4 +52,4 @@
 
     </dependencyManagement>
 
-</project>
+</project>

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/AnalyzeRequest.java

@@ -5,13 +5,20 @@ import lombok.Builder;
 import lombok.Data;
 import lombok.NoArgsConstructor;
 
+import java.time.OffsetDateTime;
+
 @Data
 @Builder
 @NoArgsConstructor
 @AllArgsConstructor
 public class AnalyzeRequest {
 
-    private byte[] document;
+    private String projectId;
+    private String fileId;
     private String ruleSetId;
+    private boolean reanalyseOnlyIfPossible;
     private ManualRedactions manualRedactions;
+    private OffsetDateTime lastProcessed;
+
 }
+

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/AnalyzeResult.java

@@ -11,9 +11,19 @@ import lombok.NoArgsConstructor;
 @AllArgsConstructor
 public class AnalyzeResult {
 
+    private String projectId;
+    private String fileId;
+    private long duration;
     private int numberOfPages;
-    private RedactionLog redactionLog;
-    private SectionGrid sectionGrid;
-    private Text text;
+    private boolean hasHints;
+    private boolean hasRequests;
+    private boolean hasRedactions;
+    private boolean hasImages;
+    private boolean hasUpdates;
+    private long dictionaryVersion;
+    private long dossierDictionaryVersion;
+    private long rulesVersion;
+
 
 }
+

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/AnnotateRequest.java

@@ -11,7 +11,6 @@ import lombok.NoArgsConstructor;
 @AllArgsConstructor
 public class AnnotateRequest {
 
-    private byte[] document;
-    private RedactionLog redactionLog;
-    private SectionGrid sectionGrid;
+    private String projectId;
+    private String fileId;
 }

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/ChangeType.java

@@ -0,0 +1,5 @@
+package com.iqser.red.service.redaction.v1.model;
+
+public enum ChangeType {
+    ADDED, REMOVED
+}

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/Comment.java

@@ -1,12 +1,12 @@
 package com.iqser.red.service.redaction.v1.model;
 
-import java.time.OffsetDateTime;
-
 import lombok.AllArgsConstructor;
 import lombok.Builder;
 import lombok.Data;
 import lombok.NoArgsConstructor;
 
+import java.time.OffsetDateTime;
+
 @Data
 @Builder
 @AllArgsConstructor

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/ManualRedactionEntry.java

@@ -1,13 +1,13 @@
 package com.iqser.red.service.redaction.v1.model;
 
-import java.util.ArrayList;
-import java.util.List;
-
 import lombok.AllArgsConstructor;
 import lombok.Builder;
 import lombok.Data;
 import lombok.NoArgsConstructor;
 
+import java.util.ArrayList;
+import java.util.List;
+
 @Data
 @Builder
 @AllArgsConstructor
@@ -27,4 +27,6 @@ public class ManualRedactionEntry {
     private String section;
     private int sectionNumber;
 
+    private boolean addToDossierDictionary;
+
 }

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/ManualRedactions.java

@@ -1,16 +1,16 @@
 package com.iqser.red.service.redaction.v1.model;
 
+import lombok.AllArgsConstructor;
+import lombok.Builder;
+import lombok.Data;
+import lombok.NoArgsConstructor;
+
 import java.util.HashMap;
 import java.util.HashSet;
 import java.util.List;
 import java.util.Map;
 import java.util.Set;
 
-import lombok.AllArgsConstructor;
-import lombok.Builder;
-import lombok.Data;
-import lombok.NoArgsConstructor;
-
 @Data
 @Builder
 @AllArgsConstructor

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/RedactionChangeLog.java

@@ -1,25 +1,22 @@
 package com.iqser.red.service.redaction.v1.model;
 
+import lombok.AllArgsConstructor;
+import lombok.Data;
+import lombok.NoArgsConstructor;
+
 import java.util.ArrayList;
 import java.util.List;
 
-import lombok.AllArgsConstructor;
-import lombok.Builder;
-import lombok.Data;
-import lombok.NoArgsConstructor;
-
 @Data
-@Builder
-@NoArgsConstructor
 @AllArgsConstructor
-public class SectionText {
+@NoArgsConstructor
+public class RedactionChangeLog {
 
-    private int sectionNumber;
-    private String text;
+    private List<RedactionChangeLogEntry> redactionLogEntry = new ArrayList<>();
 
-    private boolean isTable;
-    private String headline;
+    private long dictionaryVersion = -1;
+    private long rulesVersion = -1;
 
-    private List<SectionArea> sectionAreas = new ArrayList<>();
+    private String ruleSetId;
 
 }

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/RedactionChangeLogEntry.java

@@ -0,0 +1,47 @@
+package com.iqser.red.service.redaction.v1.model;
+
+import lombok.AllArgsConstructor;
+import lombok.Builder;
+import lombok.Data;
+import lombok.NoArgsConstructor;
+
+import java.util.ArrayList;
+import java.util.List;
+
+@Data
+@Builder
+@NoArgsConstructor
+@AllArgsConstructor
+public class RedactionChangeLogEntry {
+
+    private String id;
+    private String type;
+    private String value;
+    private String reason;
+    private int matchedRule;
+    private String legalBasis;
+    private boolean redacted;
+    private boolean isHint;
+    private boolean isRecommendation;
+    private String section;
+    private float[] color;
+
+    @Builder.Default
+    private List<Rectangle> positions = new ArrayList<>();
+    private int sectionNumber;
+    private boolean manual;
+    private Status status;
+    private ManualRedactionType manualRedactionType;
+    private boolean isDictionaryEntry;
+
+    private String textBefore;
+    private String textAfter;
+
+    @Builder.Default
+    private List<Comment> comments = new ArrayList<>();
+
+    private ChangeType changeType;
+
+    private boolean isDossierDictionaryEntry;
+
+}

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/RedactionLog.java

@@ -1,13 +1,11 @@
 package com.iqser.red.service.redaction.v1.model;
 
-import lombok.AllArgsConstructor;
 import lombok.Data;
 import lombok.NoArgsConstructor;
 
 import java.util.List;
 
 @Data
-@AllArgsConstructor
 @NoArgsConstructor
 public class RedactionLog {
 
@@ -17,15 +15,17 @@ public class RedactionLog {
     private long rulesVersion = -1;
 
     private String ruleSetId;
-    private String filename;
+
+    private long dossierDictionaryVersion = -1;
 
 
-    public RedactionLog(List<RedactionLogEntry> redactionLogEntry, long dictionaryVersion, long rulesVersion, String ruleSetId) {
+    public RedactionLog(List<RedactionLogEntry> redactionLogEntry, long dictionaryVersion, long rulesVersion, String ruleSetId, long dossierDictionaryVersion) {
 
         this.redactionLogEntry = redactionLogEntry;
         this.dictionaryVersion = dictionaryVersion;
         this.rulesVersion = rulesVersion;
         this.ruleSetId = ruleSetId;
+        this.dossierDictionaryVersion = dossierDictionaryVersion;
     }
 
 

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/RedactionLogEntry.java

@@ -1,13 +1,13 @@
 package com.iqser.red.service.redaction.v1.model;
 
-import java.util.ArrayList;
-import java.util.List;
-
 import lombok.AllArgsConstructor;
 import lombok.Builder;
 import lombok.Data;
 import lombok.NoArgsConstructor;
 
+import java.util.ArrayList;
+import java.util.List;
+
 @Data
 @Builder
 @NoArgsConstructor
@@ -45,4 +45,6 @@ public class RedactionLogEntry {
 
     private boolean isImage;
 
+    private boolean isDossierDictionaryEntry;
+
 }

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/RedactionRequest.java

@@ -11,7 +11,8 @@ import lombok.NoArgsConstructor;
 @AllArgsConstructor
 public class RedactionRequest {
 
-    private byte[] document;
+    private String projectId;
+    private String fileId;
     private String ruleSetId;
     private ManualRedactions manualRedactions;
 }

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/RedactionResult.java

@@ -13,7 +13,5 @@ public class RedactionResult {
 
     private byte[] document;
     private int numberOfPages;
-    private RedactionLog redactionLog;
-    private SectionGrid sectionGrid;
 
 }

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/RenalyzeRequest.java

@@ -1,22 +0,0 @@
-package com.iqser.red.service.redaction.v1.model;
-
-import java.time.OffsetDateTime;
-
-import lombok.AllArgsConstructor;
-import lombok.Builder;
-import lombok.Data;
-import lombok.NoArgsConstructor;
-
-@Data
-@Builder
-@NoArgsConstructor
-@AllArgsConstructor
-public class RenalyzeRequest {
-
-    private byte[] document;
-    private String ruleSetId;
-    private ManualRedactions manualRedactions;
-    private Text text;
-    private RedactionLog redactionLog;
-    private OffsetDateTime lastProcessed;
-}

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/SectionArea.java

@@ -27,7 +27,7 @@ public class SectionArea {
     private String header;
 
     public boolean contains(Rectangle other) {
-        return page == other.getPage() && this.topLeft.getX() <= other.getTopLeft().getX() && this.topLeft.getX() + this.getWidth() >= other.getTopLeft().getX() + other.getWidth() && this.getTopLeft().getY() <= other.getTopLeft().getY()  && this.getTopLeft().getY() + this.getHeight() >= other.getTopLeft().getY() + other.getHeight();
+        return page == other.getPage() && this.topLeft.getX() <= other.getTopLeft().getX() && this.topLeft.getX() + this.getWidth() >= other.getTopLeft().getX() + other.getWidth() && this.getTopLeft().getY() <= other.getTopLeft().getY() && this.getTopLeft().getY() + this.getHeight() >= other.getTopLeft().getY() + other.getHeight();
     }
 
 }

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/SectionGrid.java

@@ -1,13 +1,13 @@
 package com.iqser.red.service.redaction.v1.model;
 
-import java.util.HashMap;
-import java.util.List;
-import java.util.Map;
-
 import lombok.AllArgsConstructor;
 import lombok.Data;
 import lombok.NoArgsConstructor;
 
+import java.util.HashMap;
+import java.util.List;
+import java.util.Map;
+
 @Data
 @AllArgsConstructor
 @NoArgsConstructor

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/SectionRectangle.java

@@ -1,13 +1,13 @@
 package com.iqser.red.service.redaction.v1.model;
 
-import java.util.List;
-
 import lombok.AllArgsConstructor;
 import lombok.Data;
 import lombok.NoArgsConstructor;
 import lombok.NonNull;
 import lombok.RequiredArgsConstructor;
 
+import java.util.List;
+
 @Data
 @AllArgsConstructor
 @NoArgsConstructor

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/resources/RedactionResource.java

@@ -1,14 +1,6 @@
 package com.iqser.red.service.redaction.v1.resources;
 
-import com.iqser.red.service.redaction.v1.model.AnalyzeRequest;
-import com.iqser.red.service.redaction.v1.model.AnalyzeResult;
-import com.iqser.red.service.redaction.v1.model.AnnotateRequest;
-import com.iqser.red.service.redaction.v1.model.AnnotateResponse;
-import com.iqser.red.service.redaction.v1.model.ReanalyzeResult;
-import com.iqser.red.service.redaction.v1.model.RedactionRequest;
-import com.iqser.red.service.redaction.v1.model.RedactionResult;
-import com.iqser.red.service.redaction.v1.model.RenalyzeRequest;
-
+import com.iqser.red.service.redaction.v1.model.*;
 import org.springframework.http.MediaType;
 import org.springframework.web.bind.annotation.PathVariable;
 import org.springframework.web.bind.annotation.PostMapping;
@@ -21,11 +13,6 @@ public interface RedactionResource {
     String RULE_SET_PARAMETER_NAME = "ruleSetId";
     String RULE_SET_PATH_VARIABLE = "/{" + RULE_SET_PARAMETER_NAME + "}";
 
-    @PostMapping(value = "/analyze", produces = MediaType.APPLICATION_JSON_VALUE, consumes = MediaType.APPLICATION_JSON_VALUE)
-    AnalyzeResult analyze(@RequestBody AnalyzeRequest analyzeRequest);
-
-    @PostMapping(value = "/reanalyze", produces = MediaType.APPLICATION_JSON_VALUE, consumes = MediaType.APPLICATION_JSON_VALUE)
-    ReanalyzeResult reanalyze(@RequestBody RenalyzeRequest renalyzeRequest);
 
     @PostMapping(value = "/annotate", produces = MediaType.APPLICATION_JSON_VALUE, consumes = MediaType.APPLICATION_JSON_VALUE)
     AnnotateResponse annotate(@RequestBody AnnotateRequest annotateRequest);
@@ -39,10 +26,10 @@ public interface RedactionResource {
     @PostMapping(value = "/debug/htmlTables", produces = MediaType.APPLICATION_JSON_VALUE, consumes = MediaType.APPLICATION_JSON_VALUE)
     RedactionResult htmlTables(@RequestBody RedactionRequest redactionRequest);
 
-    @PostMapping(value = "/rules/update"+RULE_SET_PATH_VARIABLE, consumes = MediaType.APPLICATION_JSON_VALUE)
+    @PostMapping(value = "/rules/update" + RULE_SET_PATH_VARIABLE, consumes = MediaType.APPLICATION_JSON_VALUE)
     void updateRules(@PathVariable(RULE_SET_PARAMETER_NAME) String ruleSetId);
 
     @PostMapping(value = "/rules/test", consumes = MediaType.APPLICATION_JSON_VALUE)
     void testRules(@RequestBody String rules);
 
-}
+}

redaction-service-v1/redaction-service-server-v1/pom.xml

@@ -12,6 +12,10 @@
     <artifactId>redaction-service-server-v1</artifactId>
 
     <dependencies>
+        <dependency>
+            <groupId>com.iqser.red.commons</groupId>
+            <artifactId>storage-commons</artifactId>
+        </dependency>
         <dependency>
             <groupId>com.iqser.red.service</groupId>
             <artifactId>redaction-service-api-v1</artifactId>
@@ -20,7 +24,18 @@
         <dependency>
             <groupId>com.iqser.red.service</groupId>
             <artifactId>configuration-service-api-v1</artifactId>
-            <version>2.2.9</version>
+            <version>2.5.6</version>
+        </dependency>
+        <dependency>
+            <groupId>com.iqser.red.service</groupId>
+            <artifactId>file-management-service-api-v1</artifactId>
+            <version>2.7.4</version>
+            <exclusions>
+                <exclusion>
+                    <groupId>com.iqser.red.service</groupId>
+                    <artifactId>redaction-service-api-v1</artifactId>
+                </exclusion>
+            </exclusions>
         </dependency>
         <dependency>
             <groupId>org.drools</groupId>
@@ -74,6 +89,12 @@
             <artifactId>spring-cloud-starter-openfeign</artifactId>
         </dependency>
 
+        <dependency>
+            <groupId>org.springframework.boot</groupId>
+            <artifactId>spring-boot-starter-amqp</artifactId>
+            <version>2.3.1.RELEASE</version>
+        </dependency>
+
         <!-- test dependencies -->
         <dependency>
             <groupId>org.springframework.boot</groupId>
@@ -86,9 +107,9 @@
             <scope>test</scope>
         </dependency>
         <dependency>
-            <groupId>junit</groupId>
-            <artifactId>junit</artifactId>
-            <version>4.12</version>
+            <groupId>org.springframework.amqp</groupId>
+            <artifactId>spring-rabbit-test</artifactId>
+            <version>2.3.1</version>
             <scope>test</scope>
         </dependency>
     </dependencies>

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/Application.java

@@ -1,5 +1,8 @@
 package com.iqser.red.service.redaction.v1.server;
 
+import com.iqser.red.commons.spring.DefaultWebMvcConfiguration;
+import com.iqser.red.service.redaction.v1.server.client.RulesClient;
+import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
 import org.springframework.boot.SpringApplication;
 import org.springframework.boot.actuate.autoconfigure.security.servlet.ManagementWebSecurityAutoConfiguration;
 import org.springframework.boot.autoconfigure.SpringBootApplication;
@@ -8,10 +11,6 @@ import org.springframework.boot.context.properties.EnableConfigurationProperties
 import org.springframework.cloud.openfeign.EnableFeignClients;
 import org.springframework.context.annotation.Import;
 
-import com.iqser.red.commons.spring.DefaultWebMvcConfiguration;
-import com.iqser.red.service.redaction.v1.server.client.RulesClient;
-import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
-
 @Import({DefaultWebMvcConfiguration.class})
 @EnableFeignClients(basePackageClasses = RulesClient.class)
 @EnableConfigurationProperties(RedactionServiceSettings.class)
@@ -19,8 +18,9 @@ import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettin
 public class Application {
 
     public static void main(String[] args) {
+        System.setProperty("org.apache.pdfbox.rendering.UsePureJavaCMYKConversion", "true");
         SpringApplication.run(Application.class, args);
     }
 
 
-}
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/classification/model/Document.java

@@ -1,20 +1,19 @@
 package com.iqser.red.service.redaction.v1.server.classification.model;
 
+import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
+import com.iqser.red.service.redaction.v1.model.SectionGrid;
+import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryVersion;
+import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
+import com.iqser.red.service.redaction.v1.server.redaction.model.Image;
+import lombok.Data;
+import lombok.NoArgsConstructor;
+
 import java.util.ArrayList;
 import java.util.HashMap;
 import java.util.List;
 import java.util.Map;
 import java.util.Set;
 
-import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
-import com.iqser.red.service.redaction.v1.model.SectionGrid;
-import com.iqser.red.service.redaction.v1.model.SectionText;
-import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
-import com.iqser.red.service.redaction.v1.server.redaction.model.Image;
-
-import lombok.Data;
-import lombok.NoArgsConstructor;
-
 @Data
 @NoArgsConstructor
 public class Document {
@@ -33,7 +32,7 @@ public class Document {
 
     private List<RedactionLogEntry> redactionLogEntities = new ArrayList<>();
     private SectionGrid sectionGrid = new SectionGrid();
-    private long dictionaryVersion;
+    private DictionaryVersion dictionaryVersion;
     private long rulesVersion;
 
     private List<SectionText> sectionText = new ArrayList<>();

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/classification/model/FloatFrequencyCounter.java

@@ -1,5 +1,7 @@
 package com.iqser.red.service.redaction.v1.server.classification.model;
 
+import lombok.Getter;
+
 import java.util.ArrayList;
 import java.util.Collections;
 import java.util.HashMap;
@@ -7,38 +9,35 @@ import java.util.List;
 import java.util.Map;
 import java.util.stream.Collectors;
 
-import lombok.Getter;
-
-public class FloatFrequencyCounter
-{
+public class FloatFrequencyCounter {
 
     @Getter
     Map<Float, Integer> countPerValue = new HashMap<>();
 
-    public void add(float value){
-        if(!countPerValue.containsKey(value)){
+    public void add(float value) {
+        if (!countPerValue.containsKey(value)) {
             countPerValue.put(value, 1);
         } else {
             countPerValue.put(value, countPerValue.get(value) + 1);
         }
     }
 
-    public void addAll(Map<Float, Integer> otherCounter){
-        for(Map.Entry<Float, Integer> entry: otherCounter.entrySet()){
-            if(countPerValue.containsKey(entry.getKey())){
-                countPerValue.put(entry.getKey(), countPerValue.get(entry.getKey())+ entry.getValue());
+    public void addAll(Map<Float, Integer> otherCounter) {
+        for (Map.Entry<Float, Integer> entry : otherCounter.entrySet()) {
+            if (countPerValue.containsKey(entry.getKey())) {
+                countPerValue.put(entry.getKey(), countPerValue.get(entry.getKey()) + entry.getValue());
             } else {
                 countPerValue.put(entry.getKey(), entry.getValue());
             }
         }
     }
 
-    public Float getMostPopular(){
+    public Float getMostPopular() {
         Map.Entry<Float, Integer> mostPopular = null;
-        for(Map.Entry<Float, Integer> entry: countPerValue.entrySet()){
-            if(mostPopular == null){
+        for (Map.Entry<Float, Integer> entry : countPerValue.entrySet()) {
+            if (mostPopular == null) {
                 mostPopular = entry;
-            } else if(entry.getValue() >= mostPopular.getValue()){
+            } else if (entry.getValue() >= mostPopular.getValue()) {
                 mostPopular = entry;
             }
         }
@@ -46,12 +45,11 @@ public class FloatFrequencyCounter
     }
 
 
-
-    public List<Float> getHighterThanMostPopular(){
+    public List<Float> getHighterThanMostPopular() {
         Float mostPopular = getMostPopular();
         List<Float> higher = new ArrayList<>();
-        for(Float value: countPerValue.keySet()){
-            if(value > mostPopular){
+        for (Float value : countPerValue.keySet()) {
+            if (value > mostPopular) {
                 higher.add(value);
             }
         }
@@ -60,12 +58,12 @@ public class FloatFrequencyCounter
     }
 
 
-    public Float getHighest(){
+    public Float getHighest() {
         Float highest = null;
-        for(Float value: countPerValue.keySet()){
-            if (highest == null){
+        for (Float value : countPerValue.keySet()) {
+            if (highest == null) {
                 highest = value;
-            } else if(value > highest){
+            } else if (value > highest) {
                 highest = value;
             }
         }

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/classification/model/Footer.java

@@ -1,19 +1,19 @@
 package com.iqser.red.service.redaction.v1.server.classification.model;
 
-import java.util.List;
-
+import com.fasterxml.jackson.annotation.JsonIgnore;
 import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
-
 import lombok.AllArgsConstructor;
 import lombok.Data;
 
+import java.util.List;
+
 @Data
 @AllArgsConstructor
 public class Footer {
 
     private List<TextBlock> textBlocks;
 
-
+    @JsonIgnore
     public SearchableText getSearchableText() {
 
         SearchableText searchableText = new SearchableText();
@@ -21,4 +21,4 @@ public class Footer {
         return searchableText;
     }
 
-}
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/classification/model/Header.java

@@ -1,19 +1,19 @@
 package com.iqser.red.service.redaction.v1.server.classification.model;
 
-import java.util.List;
-
+import com.fasterxml.jackson.annotation.JsonIgnore;
 import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
-
 import lombok.AllArgsConstructor;
 import lombok.Data;
 
+import java.util.List;
+
 @Data
 @AllArgsConstructor
 public class Header {
 
     private List<TextBlock> textBlocks;
 
-
+    @JsonIgnore
     public SearchableText getSearchableText() {
 
         SearchableText searchableText = new SearchableText();
@@ -21,4 +21,4 @@ public class Header {
         return searchableText;
     }
 
-}
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/classification/model/Page.java

@@ -1,15 +1,14 @@
 package com.iqser.red.service.redaction.v1.server.classification.model;
 
-import java.util.List;
-
 import com.iqser.red.service.redaction.v1.server.redaction.model.PdfImage;
 import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
 import com.iqser.red.service.redaction.v1.server.tableextraction.model.Rectangle;
-
 import lombok.Data;
 import lombok.NonNull;
 import lombok.RequiredArgsConstructor;
 
+import java.util.List;
+
 @Data
 @RequiredArgsConstructor
 public class Page {
@@ -37,4 +36,4 @@ public class Page {
         return rotation != 0;
     }
 
-}
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/classification/model/Paragraph.java

@@ -1,19 +1,18 @@
 package com.iqser.red.service.redaction.v1.server.classification.model;
 
-import java.util.ArrayList;
-import java.util.List;
-
 import com.iqser.red.service.redaction.v1.server.redaction.model.PdfImage;
 import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
 import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
 import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
-
 import lombok.Data;
 import lombok.NoArgsConstructor;
 
+import java.util.ArrayList;
+import java.util.List;
+
 @Data
 @NoArgsConstructor
-public class Paragraph implements Comparable{
+public class Paragraph implements Comparable {
 
     private List<AbstractTextContainer> pageBlocks = new ArrayList<>();
     private List<PdfImage> images = new ArrayList<>();
@@ -62,4 +61,4 @@ public class Paragraph implements Comparable{
         return 0;
     }
 
-}
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/classification/model/SectionText.java

@@ -0,0 +1,52 @@
+package com.iqser.red.service.redaction.v1.server.classification.model;
+
+import com.fasterxml.jackson.annotation.JsonIgnore;
+import com.iqser.red.service.redaction.v1.model.SectionArea;
+import com.iqser.red.service.redaction.v1.server.redaction.model.CellValue;
+import com.iqser.red.service.redaction.v1.server.redaction.model.Image;
+import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
+import lombok.AllArgsConstructor;
+import lombok.Builder;
+import lombok.Data;
+import lombok.NoArgsConstructor;
+
+import java.util.*;
+
+@Data
+@Builder
+@NoArgsConstructor
+@AllArgsConstructor
+public class SectionText {
+
+    private int sectionNumber;
+    private String text;
+
+    private boolean isTable;
+    private String headline;
+
+    private List<SectionArea> sectionAreas = new ArrayList<>();
+    private Set<Image> images = new HashSet<>();
+
+    private List<TextBlock> textBlocks = new ArrayList<>();
+    private Map<String, CellValue> tabularData = new HashMap<>();
+    private List<Integer> cellStarts = new ArrayList<>();
+
+
+    public void setTabularData(Map<String, CellValue> tabularData) {
+        tabularData.remove(null);
+        this.tabularData = tabularData;
+    }
+
+    @JsonIgnore
+    public SearchableText getSearchableText() {
+
+        SearchableText searchableText = new SearchableText();
+        textBlocks.forEach(block -> {
+            if (block != null) {
+                searchableText.addAll(block.getSequences());
+            }
+        });
+        return searchableText;
+    }
+
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/classification/model/StringFrequencyCounter.java

@@ -1,10 +1,10 @@
 package com.iqser.red.service.redaction.v1.server.classification.model;
 
+import lombok.Getter;
+
 import java.util.HashMap;
 import java.util.Map;
 
-import lombok.Getter;
-
 public class StringFrequencyCounter {
 
     @Getter
@@ -46,4 +46,4 @@ public class StringFrequencyCounter {
         return mostPopular != null ? mostPopular.getKey() : null;
     }
 
-}
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/classification/model/Text.java

@@ -1,17 +1,18 @@
-package com.iqser.red.service.redaction.v1.model;
-
-import java.util.ArrayList;
-import java.util.List;
+package com.iqser.red.service.redaction.v1.server.classification.model;
 
 import lombok.AllArgsConstructor;
 import lombok.Data;
 import lombok.NoArgsConstructor;
 
+import java.util.ArrayList;
+import java.util.List;
+
 @Data
 @NoArgsConstructor
 @AllArgsConstructor
 public class Text {
 
+    private int numberOfPages;
     private List<SectionText> sectionTexts = new ArrayList<>();
 
 }

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/classification/model/TextBlock.java

@@ -1,19 +1,21 @@
 package com.iqser.red.service.redaction.v1.server.classification.model;
 
+import com.fasterxml.jackson.annotation.JsonIgnore;
+import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
+import com.iqser.red.service.redaction.v1.server.redaction.utils.TextNormalizationUtilities;
+import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
+import lombok.AllArgsConstructor;
+import lombok.Builder;
+import lombok.Data;
+import lombok.NoArgsConstructor;
+
 import java.util.ArrayList;
 import java.util.List;
 
-import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
-import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
-import com.iqser.red.service.redaction.v1.server.redaction.utils.TextNormalizationUtilities;
-
-import lombok.AllArgsConstructor;
-import lombok.Builder;
-import lombok.Data;
-
 @AllArgsConstructor
 @Builder
 @Data
+@NoArgsConstructor
 public class TextBlock extends AbstractTextContainer {
 
     @Builder.Default
@@ -98,7 +100,6 @@ public class TextBlock extends AbstractTextContainer {
     }
 
 
-
     @Override
     public String toString() {
 
@@ -118,6 +119,7 @@ public class TextBlock extends AbstractTextContainer {
     }
 
     @Override
+    @JsonIgnore
     public String getText() {
 
         StringBuilder sb = new StringBuilder();
@@ -139,4 +141,4 @@ public class TextBlock extends AbstractTextContainer {
 
     }
 
-}
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/classification/model/UnclassifiedText.java

@@ -1,19 +1,19 @@
 package com.iqser.red.service.redaction.v1.server.classification.model;
 
-import java.util.List;
-
+import com.fasterxml.jackson.annotation.JsonIgnore;
 import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
-
 import lombok.AllArgsConstructor;
 import lombok.Data;
 
+import java.util.List;
+
 @Data
 @AllArgsConstructor
 public class UnclassifiedText {
 
     private List<TextBlock> textBlocks;
 
-
+    @JsonIgnore
     public SearchableText getSearchableText() {
 
         SearchableText searchableText = new SearchableText();
@@ -21,4 +21,4 @@ public class UnclassifiedText {
         return searchableText;
     }
 
-}
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/classification/service/BlockificationService.java

@@ -1,21 +1,20 @@
 package com.iqser.red.service.redaction.v1.server.classification.service;
 
-import java.util.ArrayList;
-import java.util.List;
-
-import org.springframework.stereotype.Service;
-
-import com.iqser.red.service.redaction.v1.server.classification.utils.PositionUtils;
 import com.iqser.red.service.redaction.v1.server.classification.model.FloatFrequencyCounter;
 import com.iqser.red.service.redaction.v1.server.classification.model.Page;
 import com.iqser.red.service.redaction.v1.server.classification.model.StringFrequencyCounter;
 import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
+import com.iqser.red.service.redaction.v1.server.classification.utils.PositionUtils;
 import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
 import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
 import com.iqser.red.service.redaction.v1.server.tableextraction.model.Cell;
 import com.iqser.red.service.redaction.v1.server.tableextraction.model.Rectangle;
 import com.iqser.red.service.redaction.v1.server.tableextraction.model.Ruling;
 import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
+import org.springframework.stereotype.Service;
+
+import java.util.ArrayList;
+import java.util.List;
 
 @Service
 @SuppressWarnings("all")

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/classification/service/ClassificationService.java

@@ -1,19 +1,17 @@
 package com.iqser.red.service.redaction.v1.server.classification.service;
 
-import java.util.List;
-import java.util.regex.Pattern;
-
-import org.springframework.stereotype.Service;
-
 import com.iqser.red.service.redaction.v1.server.classification.model.Document;
 import com.iqser.red.service.redaction.v1.server.classification.model.Page;
 import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
 import com.iqser.red.service.redaction.v1.server.classification.utils.PositionUtils;
 import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
 import com.iqser.red.service.redaction.v1.server.tableextraction.model.Rectangle;
-
 import lombok.RequiredArgsConstructor;
 import lombok.extern.slf4j.Slf4j;
+import org.springframework.stereotype.Service;
+
+import java.util.List;
+import java.util.regex.Pattern;
 
 @Slf4j
 @Service

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/classification/utils/PositionUtils.java

@@ -2,7 +2,6 @@ package com.iqser.red.service.redaction.v1.server.classification.utils;
 
 import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
 import com.iqser.red.service.redaction.v1.server.tableextraction.model.Rectangle;
-
 import lombok.experimental.UtilityClass;
 
 @UtilityClass

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/client/FileStatusProcessingUpdateClient.java

@@ -0,0 +1,9 @@
+package com.iqser.red.service.redaction.v1.server.client;
+
+
+import com.iqser.red.service.file.management.v1.api.resources.FileStatusProcessingUpdateResource;
+import org.springframework.cloud.openfeign.FeignClient;
+
+@FeignClient(name = "FileStatusProcessingUpdateResource", url = "${file-management-service.url}")
+public interface FileStatusProcessingUpdateClient extends FileStatusProcessingUpdateResource {
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/client/MockMultipartFile.java

@@ -1,16 +1,16 @@
 package com.iqser.red.service.redaction.v1.server.client;
 
-import java.io.ByteArrayInputStream;
-import java.io.File;
-import java.io.IOException;
-import java.io.InputStream;
-
 import org.springframework.lang.NonNull;
 import org.springframework.lang.Nullable;
 import org.springframework.util.Assert;
 import org.springframework.util.FileCopyUtils;
 import org.springframework.web.multipart.MultipartFile;
 
+import java.io.ByteArrayInputStream;
+import java.io.File;
+import java.io.IOException;
+import java.io.InputStream;
+
 public class MockMultipartFile implements MultipartFile {
 
     private final String name;
@@ -22,13 +22,13 @@ public class MockMultipartFile implements MultipartFile {
 
     public MockMultipartFile(String name, @Nullable byte[] content) {
 
-        this(name, "", (String) null, (byte[]) content);
+        this(name, "", null, content);
     }
 
 
     public MockMultipartFile(String name, InputStream contentStream) throws IOException {
 
-        this(name, "", (String) null, (byte[]) FileCopyUtils.copyToByteArray(contentStream));
+        this(name, "", null, FileCopyUtils.copyToByteArray(contentStream));
     }
 
 
@@ -78,7 +78,7 @@ public class MockMultipartFile implements MultipartFile {
 
     public long getSize() {
 
-        return (long) this.content.length;
+        return this.content.length;
     }
 
 

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/client/RulesClient.java

@@ -3,6 +3,6 @@ package com.iqser.red.service.redaction.v1.server.client;
 import com.iqser.red.service.configuration.v1.api.resource.RulesResource;
 import org.springframework.cloud.openfeign.FeignClient;
 
-@FeignClient(name = RulesResource.SERVICE_NAME, url = "${configuration-service.url}")
+@FeignClient(name = "RulesResource", url = "${configuration-service.url}")
 public interface RulesClient extends RulesResource {
-}
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/controller/ControllerAdvice.java

@@ -1,17 +1,15 @@
 package com.iqser.red.service.redaction.v1.server.controller;
 
-import java.time.OffsetDateTime;
-
 import com.iqser.red.commons.spring.ErrorMessage;
+import com.iqser.red.service.redaction.v1.server.exception.RulesValidationException;
+import lombok.extern.slf4j.Slf4j;
 import org.springframework.http.HttpStatus;
 import org.springframework.web.bind.annotation.ExceptionHandler;
 import org.springframework.web.bind.annotation.ResponseBody;
 import org.springframework.web.bind.annotation.ResponseStatus;
 import org.springframework.web.bind.annotation.RestControllerAdvice;
 
-import com.iqser.red.service.redaction.v1.server.exception.RulesValidationException;
-
-import lombok.extern.slf4j.Slf4j;
+import java.time.OffsetDateTime;
 
 @Slf4j
 @RestControllerAdvice
@@ -38,4 +36,4 @@ public class ControllerAdvice {
         return new ErrorMessage(OffsetDateTime.now(), e.getMessage());
     }
 
-}
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/controller/RedactionController.java

@@ -1,17 +1,10 @@
 package com.iqser.red.service.redaction.v1.server.controller;
 
-import com.iqser.red.service.redaction.v1.model.AnalyzeRequest;
-import com.iqser.red.service.redaction.v1.model.AnalyzeResult;
+import com.iqser.red.service.file.management.v1.api.model.FileType;
 import com.iqser.red.service.redaction.v1.model.AnnotateRequest;
 import com.iqser.red.service.redaction.v1.model.AnnotateResponse;
-import com.iqser.red.service.redaction.v1.model.ReanalyzeResult;
-import com.iqser.red.service.redaction.v1.model.RedactionLog;
-import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
 import com.iqser.red.service.redaction.v1.model.RedactionRequest;
 import com.iqser.red.service.redaction.v1.model.RedactionResult;
-import com.iqser.red.service.redaction.v1.model.RenalyzeRequest;
-import com.iqser.red.service.redaction.v1.model.SectionGrid;
-import com.iqser.red.service.redaction.v1.model.Text;
 import com.iqser.red.service.redaction.v1.resources.RedactionResource;
 import com.iqser.red.service.redaction.v1.server.classification.model.Document;
 import com.iqser.red.service.redaction.v1.server.classification.model.Page;
@@ -19,27 +12,21 @@ import com.iqser.red.service.redaction.v1.server.exception.RedactionException;
 import com.iqser.red.service.redaction.v1.server.redaction.service.AnnotationService;
 import com.iqser.red.service.redaction.v1.server.redaction.service.DictionaryService;
 import com.iqser.red.service.redaction.v1.server.redaction.service.DroolsExecutionService;
-import com.iqser.red.service.redaction.v1.server.redaction.service.EntityRedactionService;
-import com.iqser.red.service.redaction.v1.server.redaction.service.ImageClassificationService;
-import com.iqser.red.service.redaction.v1.server.redaction.service.ReanalyzeService;
-import com.iqser.red.service.redaction.v1.server.redaction.service.RedactionLogCreatorService;
 import com.iqser.red.service.redaction.v1.server.segmentation.PdfSegmentationService;
+import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
 import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
 import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
 import com.iqser.red.service.redaction.v1.server.visualization.service.PdfVisualisationService;
-
 import lombok.RequiredArgsConstructor;
 import lombok.extern.slf4j.Slf4j;
-
+import org.apache.pdfbox.io.MemoryUsageSetting;
 import org.apache.pdfbox.pdmodel.PDDocument;
 import org.springframework.web.bind.annotation.PathVariable;
 import org.springframework.web.bind.annotation.RequestBody;
 import org.springframework.web.bind.annotation.RestController;
 
-import java.io.ByteArrayInputStream;
 import java.io.ByteArrayOutputStream;
 import java.io.IOException;
-import java.util.List;
 
 @Slf4j
 @RestController
@@ -47,61 +34,24 @@ import java.util.List;
 public class RedactionController implements RedactionResource {
 
     private final PdfVisualisationService pdfVisualisationService;
-    private final PdfSegmentationService pdfSegmentationService;
-    private final RedactionLogCreatorService redactionLogCreatorService;
-    private final EntityRedactionService entityRedactionService;
     private final DroolsExecutionService droolsExecutionService;
     private final DictionaryService dictionaryService;
     private final AnnotationService annotationService;
-    private final ReanalyzeService reanalyzeService;
-    private final ImageClassificationService imageClassificationService;
-
-
-    @Override
-    public AnalyzeResult analyze(@RequestBody AnalyzeRequest analyzeRequest) {
-
-        try (PDDocument pdDocument = PDDocument.load(new ByteArrayInputStream(analyzeRequest.getDocument()))) {
-            pdDocument.setAllSecurityToBeRemoved(true);
-
-            Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
-
-            log.info("Document structure analysis successful, starting redaction analysis...");
-
-            imageClassificationService.classifyImages(classifiedDoc);
-            entityRedactionService.processDocument(classifiedDoc, analyzeRequest.getRuleSetId(), analyzeRequest.getManualRedactions());
-            redactionLogCreatorService.createRedactionLog(classifiedDoc, pdDocument.getNumberOfPages(), analyzeRequest.getManualRedactions(), analyzeRequest
-                    .getRuleSetId());
-
-            log.info("Redaction analysis successful...");
-
-            return AnalyzeResult.builder()
-                    .sectionGrid(classifiedDoc.getSectionGrid())
-                    .redactionLog(new RedactionLog(classifiedDoc.getRedactionLogEntities(), classifiedDoc.getDictionaryVersion(), classifiedDoc
-                            .getRulesVersion(), analyzeRequest.getRuleSetId()))
-                    .numberOfPages(classifiedDoc.getPages().size())
-                    .text(new Text(classifiedDoc.getSectionText()))
-                    .build();
-
-        } catch (Exception e) {
-            throw new RedactionException(e);
-        }
-
-    }
-
-
-    public ReanalyzeResult reanalyze(@RequestBody RenalyzeRequest renalyzeRequest) {
-
-        return reanalyzeService.reanalyze(renalyzeRequest);
-    }
+    private final PdfSegmentationService pdfSegmentationService;
+    private final RedactionStorageService redactionStorageService;
 
 
     public AnnotateResponse annotate(@RequestBody AnnotateRequest annotateRequest) {
 
-        try (PDDocument pdDocument = PDDocument.load(new ByteArrayInputStream(annotateRequest.getDocument()))) {
+        var storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(annotateRequest.getProjectId(), annotateRequest.getFileId(), FileType.ORIGIN));
+        var redactionLog = redactionStorageService.getRedactionLog(annotateRequest.getProjectId(), annotateRequest.getFileId());
+        var sectionsGrid = redactionStorageService.getSectionGrid(annotateRequest.getProjectId(), annotateRequest.getFileId());
 
+        try (PDDocument pdDocument = PDDocument.load(storedObjectStream, MemoryUsageSetting.setupTempFileOnly())) {
             pdDocument.setAllSecurityToBeRemoved(true);
-            dictionaryService.updateDictionary(annotateRequest.getRedactionLog().getRuleSetId());
-            annotationService.annotate(pdDocument, annotateRequest.getRedactionLog(), annotateRequest.getSectionGrid());
+
+            dictionaryService.updateDictionary(redactionLog.getRuleSetId(), annotateRequest.getProjectId());
+            annotationService.annotate(pdDocument, redactionLog, sectionsGrid);
 
             try (ByteArrayOutputStream byteArrayOutputStream = new ByteArrayOutputStream()) {
                 pdDocument.save(byteArrayOutputStream);
@@ -115,65 +65,80 @@ public class RedactionController implements RedactionResource {
 
 
     @Override
-    public RedactionResult classify(@RequestBody RedactionRequest pdfSegmentationRequest) {
+    public RedactionResult classify(@RequestBody RedactionRequest redactionRequest) {
+        var storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(redactionRequest.getProjectId(), redactionRequest.getFileId(), FileType.ORIGIN));
+        try {
+            Document classifiedDoc = pdfSegmentationService.parseDocument(storedObjectStream);
 
-        try (PDDocument pdDocument = PDDocument.load(new ByteArrayInputStream(pdfSegmentationRequest.getDocument()))) {
-            pdDocument.setAllSecurityToBeRemoved(true);
+            storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(redactionRequest.getProjectId(), redactionRequest.getFileId(), FileType.ORIGIN));
+            try (PDDocument pdDocument = PDDocument.load(storedObjectStream)) {
+                pdDocument.setAllSecurityToBeRemoved(true);
 
-            Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
-            pdfVisualisationService.visualizeClassifications(classifiedDoc, pdDocument);
+                pdfVisualisationService.visualizeClassifications(classifiedDoc, pdDocument);
 
-            return convert(pdDocument, classifiedDoc.getPages().size(), pdfSegmentationRequest.getRuleSetId());
+                return convert(pdDocument, classifiedDoc.getPages().size());
+
+            } catch (IOException e) {
+                throw new RedactionException(e);
+            }
 
         } catch (IOException e) {
             throw new RedactionException(e);
         }
 
+
     }
 
-
     @Override
     public RedactionResult sections(@RequestBody RedactionRequest redactionRequest) {
+        var storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(redactionRequest.getProjectId(), redactionRequest.getFileId(), FileType.ORIGIN));
+        try {
+            Document classifiedDoc = pdfSegmentationService.parseDocument(storedObjectStream);
 
-        try (PDDocument pdDocument = PDDocument.load(new ByteArrayInputStream(redactionRequest.getDocument()))) {
-            pdDocument.setAllSecurityToBeRemoved(true);
+            storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(redactionRequest.getProjectId(), redactionRequest.getFileId(), FileType.ORIGIN));
+            try (PDDocument pdDocument = PDDocument.load(storedObjectStream)) {
+                pdDocument.setAllSecurityToBeRemoved(true);
 
-            Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
-            pdfVisualisationService.visualizeParagraphs(classifiedDoc, pdDocument);
+                pdfVisualisationService.visualizeParagraphs(classifiedDoc, pdDocument);
+                return convert(pdDocument, classifiedDoc.getPages().size());
 
-            return convert(pdDocument, classifiedDoc.getPages().size(), redactionRequest.getRuleSetId());
+            } catch (IOException e) {
+                throw new RedactionException(e);
+            }
 
         } catch (IOException e) {
             throw new RedactionException(e);
         }
 
+
     }
 
 
     @Override
     public RedactionResult htmlTables(@RequestBody RedactionRequest redactionRequest) {
 
-        try (PDDocument pdDocument = PDDocument.load(new ByteArrayInputStream(redactionRequest.getDocument()))) {
-            pdDocument.setAllSecurityToBeRemoved(true);
+        Document classifiedDoc;
 
-            Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
-
-            StringBuilder sb = new StringBuilder();
-            for (Page page : classifiedDoc.getPages()) {
-                for (AbstractTextContainer textContainer : page.getTextBlocks()) {
-                    if (textContainer instanceof Table) {
-                        Table table = (Table) textContainer;
-                        sb.append(table.getTextAsHtml()).append("<br />").append("<br />");
-                    }
-                }
-            }
-
-            return RedactionResult.builder().document(sb.toString().getBytes()).build();
-
-        } catch (IOException e) {
+        try {
+            var storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(redactionRequest.getProjectId(), redactionRequest.getFileId(), FileType.ORIGIN));
+            classifiedDoc = pdfSegmentationService.parseDocument(storedObjectStream, true);
+        } catch (Exception e) {
             throw new RedactionException(e);
         }
 
+
+        StringBuilder sb = new StringBuilder();
+        for (Page page : classifiedDoc.getPages()) {
+            for (AbstractTextContainer textContainer : page.getTextBlocks()) {
+                if (textContainer instanceof Table) {
+                    Table table = (Table) textContainer;
+                    sb.append(table.getTextAsHtml()).append("<br />").append("<br />");
+                }
+            }
+        }
+
+        return RedactionResult.builder().document(sb.toString().getBytes()).build();
+
     }
 
 
@@ -191,26 +156,17 @@ public class RedactionController implements RedactionResource {
     }
 
 
-    private RedactionResult convert(PDDocument document, int numberOfPages, String ruleSetId) throws IOException {
-
-        return convert(document, numberOfPages, null, null, 0, 0, ruleSetId);
-    }
-
-
-    private RedactionResult convert(PDDocument document, int numberOfPages,
-                                    List<RedactionLogEntry> redactionLogEntities, SectionGrid sectionGrid,
-                                    long dictionaryVersion, long rulesVersion, String ruleSetId) throws IOException {
+    private RedactionResult convert(PDDocument document, int numberOfPages) throws IOException {
 
         try (ByteArrayOutputStream byteArrayOutputStream = new ByteArrayOutputStream()) {
             document.save(byteArrayOutputStream);
             return RedactionResult.builder()
                     .document(byteArrayOutputStream.toByteArray())
                     .numberOfPages(numberOfPages)
-                    .redactionLog(new RedactionLog(redactionLogEntities, dictionaryVersion, rulesVersion, ruleSetId))
-                    .sectionGrid(sectionGrid)
                     .build();
         }
 
     }
 
+
 }

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/memory/MemoryStats.java

@@ -0,0 +1,52 @@
+package com.iqser.red.service.redaction.v1.server.memory;
+
+import lombok.extern.slf4j.Slf4j;
+
+import java.text.CharacterIterator;
+import java.text.StringCharacterIterator;
+
+@Slf4j
+public class MemoryStats {
+
+
+    public static void printMemoryStats() {
+        log.info("\n\n ------------------------------ \n" +
+                " Used Memory: " + humanReadableByteCountBin(getUsedMemory()) + "\n" +
+                " Free Memory: " + humanReadableByteCountBin(getFreeMemory()) + "\n" +
+                " Total Memory: " + humanReadableByteCountBin(getTotalMemory()) + "\n" +
+                " Max Memory: " + humanReadableByteCountBin(getMaxMemory()) + "\n" +
+                "\n ------------------------------ \n");
+    }
+
+
+    public static String humanReadableByteCountBin(long bytes) {
+        long absB = bytes == Long.MIN_VALUE ? Long.MAX_VALUE : Math.abs(bytes);
+        if (absB < 1024) {
+            return bytes + " B";
+        }
+        long value = absB;
+        CharacterIterator ci = new StringCharacterIterator("KMGTPE");
+        for (int i = 40; i >= 0 && absB > 0xfffccccccccccccL >> i; i -= 10) {
+            value >>= 10;
+            ci.next();
+        }
+        value *= Long.signum(bytes);
+        return String.format("%.1f %ciB", value / 1024.0, ci.current());
+    }
+
+    private static long getMaxMemory() {
+        return Runtime.getRuntime().maxMemory();
+    }
+
+    private static long getUsedMemory() {
+        return getMaxMemory() - getFreeMemory();
+    }
+
+    private static long getTotalMemory() {
+        return Runtime.getRuntime().totalMemory();
+    }
+
+    private static long getFreeMemory() {
+        return Runtime.getRuntime().freeMemory();
+    }
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/parsing/PDFAreaTextStripper.java

@@ -1,17 +1,15 @@
 package com.iqser.red.service.redaction.v1.server.parsing;
 
+import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
+import lombok.Getter;
+import lombok.Setter;
+import org.apache.pdfbox.text.PDFTextStripperByArea;
+import org.apache.pdfbox.text.TextPosition;
+
 import java.io.IOException;
 import java.util.ArrayList;
 import java.util.List;
 
-import org.apache.pdfbox.text.PDFTextStripperByArea;
-import org.apache.pdfbox.text.TextPosition;
-
-import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
-
-import lombok.Getter;
-import lombok.Setter;
-
 public class PDFAreaTextStripper extends PDFTextStripperByArea {
 
     @Getter
@@ -76,7 +74,7 @@ public class PDFAreaTextStripper extends PDFTextStripperByArea {
     }
 
 
-    public void clearPositions(){
+    public void clearPositions() {
         textPositionSequences = new ArrayList<>();
     }
 

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/parsing/PDFLinesTextStripper.java

@@ -1,33 +1,16 @@
 package com.iqser.red.service.redaction.v1.server.parsing;
 
-import java.awt.geom.AffineTransform;
-import java.awt.geom.Point2D;
-import java.awt.geom.Rectangle2D;
-import java.io.IOException;
-import java.util.ArrayList;
-import java.util.List;
-
+import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
+import com.iqser.red.service.redaction.v1.server.redaction.model.PdfImage;
+import com.iqser.red.service.redaction.v1.server.tableextraction.model.Ruling;
+import lombok.Getter;
+import lombok.Setter;
+import lombok.extern.slf4j.Slf4j;
+import org.apache.commons.lang3.reflect.FieldUtils;
 import org.apache.pdfbox.contentstream.operator.Operator;
 import org.apache.pdfbox.contentstream.operator.OperatorName;
-import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingColor;
-import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingColorN;
-import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingColorSpace;
-import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingDeviceCMYKColor;
-import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingDeviceGrayColor;
-import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingDeviceRGBColor;
-import org.apache.pdfbox.contentstream.operator.color.SetStrokingColor;
-import org.apache.pdfbox.contentstream.operator.color.SetStrokingColorN;
-import org.apache.pdfbox.contentstream.operator.color.SetStrokingColorSpace;
-import org.apache.pdfbox.contentstream.operator.color.SetStrokingDeviceCMYKColor;
-import org.apache.pdfbox.contentstream.operator.color.SetStrokingDeviceGrayColor;
-import org.apache.pdfbox.contentstream.operator.color.SetStrokingDeviceRGBColor;
-import org.apache.pdfbox.contentstream.operator.state.SetFlatness;
-import org.apache.pdfbox.contentstream.operator.state.SetLineCapStyle;
-import org.apache.pdfbox.contentstream.operator.state.SetLineDashPattern;
-import org.apache.pdfbox.contentstream.operator.state.SetLineJoinStyle;
-import org.apache.pdfbox.contentstream.operator.state.SetLineMiterLimit;
-import org.apache.pdfbox.contentstream.operator.state.SetLineWidth;
-import org.apache.pdfbox.contentstream.operator.state.SetRenderingIntent;
+import org.apache.pdfbox.contentstream.operator.color.*;
+import org.apache.pdfbox.contentstream.operator.state.*;
 import org.apache.pdfbox.contentstream.operator.text.SetFontAndSize;
 import org.apache.pdfbox.cos.COSBase;
 import org.apache.pdfbox.cos.COSName;
@@ -40,40 +23,31 @@ import org.apache.pdfbox.text.PDFTextStripper;
 import org.apache.pdfbox.text.TextPosition;
 import org.apache.pdfbox.util.Matrix;
 
-import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
-import com.iqser.red.service.redaction.v1.server.redaction.model.PdfImage;
-import com.iqser.red.service.redaction.v1.server.tableextraction.model.Ruling;
-
-import lombok.Getter;
-import lombok.Setter;
-import lombok.extern.slf4j.Slf4j;
+import java.awt.geom.AffineTransform;
+import java.awt.geom.Point2D;
+import java.awt.geom.Rectangle2D;
+import java.io.IOException;
+import java.util.ArrayList;
+import java.util.List;
 
 @Slf4j
 public class PDFLinesTextStripper extends PDFTextStripper {
 
-    @Setter
-    protected PDPage pdpage;
-
-    @Getter
-    private int minCharWidth;
-
-    @Getter
-    private int maxCharWidth;
-
-    @Getter
-    private int minCharHeight;
-
-    @Getter
-    private int maxCharHeight;
-
     @Getter
     private final List<TextPositionSequence> textPositionSequences = new ArrayList<>();
-
     @Getter
     private final List<Ruling> rulings = new ArrayList<>();
-
     private final List<Ruling> graphicsPath = new ArrayList<>();
-
+    @Setter
+    protected PDPage pdpage;
+    @Getter
+    private int minCharWidth;
+    @Getter
+    private int maxCharWidth;
+    @Getter
+    private int minCharHeight;
+    @Getter
+    private int maxCharHeight;
     @Getter
     private List<PdfImage> images = new ArrayList<>();
 
@@ -222,6 +196,9 @@ public class PDFLinesTextStripper extends PDFTextStripper {
                 Rectangle2D rect = new Rectangle2D.Float((float) imageBounds.getX(), (float) imageBounds.getY(), (float) imageBounds
                         .getWidth(), (float) imageBounds.getHeight());
 
+                // Memory Hack - sofReference kills me
+                FieldUtils.writeField(pdfImage, "cachedImageSubsampling", -1, true);
+
                 if (rect.getHeight() > 2 && rect.getWidth() > 2) {
                     this.images.add(new PdfImage(pdfImage.getImage(), rect, pageNumber));
                 }
@@ -369,4 +346,4 @@ public class PDFLinesTextStripper extends PDFTextStripper {
 
     }
 
-}
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/parsing/model/RedTextPosition.java

@@ -0,0 +1,52 @@
+package com.iqser.red.service.redaction.v1.server.parsing.model;
+
+import com.fasterxml.jackson.annotation.JsonIgnore;
+import lombok.Data;
+import lombok.NoArgsConstructor;
+import lombok.SneakyThrows;
+import org.apache.pdfbox.text.TextPosition;
+import org.springframework.beans.BeanUtils;
+
+@Data
+@NoArgsConstructor
+public class RedTextPosition {
+
+    private String textMatrix;
+    private int rotation;
+    private float y;
+    private float pageHeight;
+    private float pageWidth;
+    private String unicode;
+    private float XDirAdj;
+    private float YDirAdj;
+    private float width;
+    private float heightDir;
+
+    // not used in reanalysis
+    @JsonIgnore
+    private float widthOfSpace;
+
+    // not used in reanalysis
+    @JsonIgnore
+    private float fontSizeInPt;
+
+    // not used in reanalysis
+    @JsonIgnore
+    private String fontName;
+
+
+    @SneakyThrows
+    public static RedTextPosition fromTextPosition(TextPosition textPosition) {
+        var pos = new RedTextPosition();
+        BeanUtils.copyProperties(textPosition, pos);
+        pos.setFontName(textPosition.getFont().getName());
+
+        pos.setFontSizeInPt(textPosition.getFontSizeInPt());
+
+        pos.setTextMatrix(textPosition.getTextMatrix().toString());
+
+        return pos;
+    }
+
+
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/parsing/model/TextPositionSequence.java

@@ -1,32 +1,52 @@
 package com.iqser.red.service.redaction.v1.server.parsing.model;
 
+import com.fasterxml.jackson.annotation.JsonIgnore;
+import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
+import com.iqser.red.service.redaction.v1.model.Point;
+import com.iqser.red.service.redaction.v1.model.Rectangle;
+import lombok.Data;
+import lombok.NoArgsConstructor;
+import org.apache.pdfbox.text.TextPosition;
+
 import java.util.ArrayList;
 import java.util.List;
-
-import org.apache.pdfbox.text.TextPosition;
-
-import com.iqser.red.service.redaction.v1.model.Point;
-import com.iqser.red.service.redaction.v1.model.Rectangle;
-
-import lombok.Data;
-import lombok.RequiredArgsConstructor;
+import java.util.stream.Collectors;
 
 @Data
-@RequiredArgsConstructor
+@NoArgsConstructor
+@JsonIgnoreProperties({ "empty" })
 public class TextPositionSequence implements CharSequence {
 
-    private List<TextPosition> textPositions = new ArrayList<>();
+    private int page;
+    private List<RedTextPosition> textPositions = new ArrayList<>();
 
-    private final int page;
+    private float x1;
+    private float x2;
+
+    public TextPositionSequence(int page) {
+        this.page = page;
+    }
+
+
+    public static TextPositionSequence fromData(List<RedTextPosition> textPositions, int page) {
+        var textPositionSequence = new TextPositionSequence();
+        textPositionSequence.textPositions = textPositions;
+        textPositionSequence.page = page;
+
+        return textPositionSequence;
+    }
 
 
     public TextPositionSequence(List<TextPosition> textPositions, int page) {
 
-        this.textPositions = textPositions;
+        this.textPositions = textPositions.stream().map(RedTextPosition::fromTextPosition).collect(Collectors.toList());
         this.page = page;
     }
 
 
+
+
+
     @Override
     public int length() {
 
@@ -37,7 +57,7 @@ public class TextPositionSequence implements CharSequence {
     @Override
     public char charAt(int index) {
 
-        TextPosition textPosition = textPositionAt(index);
+        RedTextPosition textPosition = textPositionAt(index);
         String text = textPosition.getUnicode();
         return text.charAt(0);
     }
@@ -45,7 +65,7 @@ public class TextPositionSequence implements CharSequence {
 
     public char charAt(int index, boolean caseInSensitive) {
 
-        TextPosition textPosition = textPositionAt(index);
+        RedTextPosition textPosition = textPositionAt(index);
         String text = textPosition.getUnicode();
         return caseInSensitive ? text.toLowerCase().charAt(0) : text.charAt(0);
     }
@@ -54,7 +74,7 @@ public class TextPositionSequence implements CharSequence {
     @Override
     public TextPositionSequence subSequence(int start, int end) {
 
-        return new TextPositionSequence(textPositions.subList(start, end), page);
+        return fromData(textPositions.subList(start, end), page);
     }
 
 
@@ -69,18 +89,25 @@ public class TextPositionSequence implements CharSequence {
     }
 
 
-    public TextPosition textPositionAt(int index) {
+    public RedTextPosition textPositionAt(int index) {
 
         return textPositions.get(index);
     }
 
 
-    public void add(TextPosition textPosition) {
+    public void add(RedTextPosition textPosition) {
 
         this.textPositions.add(textPosition);
     }
 
 
+    public void add(TextPosition textPosition) {
+
+        this.textPositions.add(RedTextPosition.fromTextPosition(textPosition));
+    }
+
+
+    @JsonIgnore
     public float getX1() {
 
         if (textPositions.get(0).getRotation() == 90) {
@@ -91,6 +118,7 @@ public class TextPositionSequence implements CharSequence {
     }
 
 
+    @JsonIgnore
     public float getX2() {
 
         if (textPositions.get(0).getRotation() == 90) {
@@ -101,13 +129,14 @@ public class TextPositionSequence implements CharSequence {
         }
     }
 
-
+    @JsonIgnore
     public float getRotationAdjustedY() {
 
         return textPositions.get(0).getY();
     }
 
 
+    @JsonIgnore
     public float getY1() {
 
         if (textPositions.get(0).getRotation() == 90) {
@@ -118,6 +147,7 @@ public class TextPositionSequence implements CharSequence {
     }
 
 
+    @JsonIgnore
     public float getY2() {
 
         if (textPositions.get(0).getRotation() == 90) {
@@ -128,38 +158,40 @@ public class TextPositionSequence implements CharSequence {
     }
 
 
+    @JsonIgnore
     public float getTextHeight() {
 
         return textPositions.get(0).getHeightDir() + 2;
     }
 
 
+    @JsonIgnore
     public float getHeight() {
 
         return getY2() - getY1();
     }
 
 
+    @JsonIgnore
     public float getWidth() {
 
         return getX2() - getX1();
     }
 
 
+    @JsonIgnore
     public String getFont() {
-
-        return textPositions.get(0)
-                .getFont()
-                .toString()
+        return textPositions.get(0).getFontName()
                 .toLowerCase()
                 .replaceAll(",bold", "")
                 .replaceAll(",italic", "");
     }
 
 
+    @JsonIgnore
     public String getFontStyle() {
 
-        String lowercaseFontName = textPositions.get(0).getFont().toString().toLowerCase();
+        String lowercaseFontName = textPositions.get(0).getFontName().toLowerCase();
 
         if (lowercaseFontName.contains("bold") && lowercaseFontName.contains("italic")) {
             return "bold, italic";
@@ -173,25 +205,25 @@ public class TextPositionSequence implements CharSequence {
 
     }
 
-
+    @JsonIgnore
     public float getFontSize() {
 
         return textPositions.get(0).getFontSizeInPt();
     }
 
-
+    @JsonIgnore
     public float getSpaceWidth() {
 
         return textPositions.get(0).getWidthOfSpace();
     }
 
-
+    @JsonIgnore
     public int getRotation() {
 
         return textPositions.get(0).getRotation();
     }
 
-
+    @JsonIgnore
     public Rectangle getRectangle() {
 
         float height = getTextHeight();
@@ -223,4 +255,4 @@ public class TextPositionSequence implements CharSequence {
         return new Rectangle(new Point(posXInit, posYInit), posXEnd - posXInit, posYEnd - posYInit + height, page);
     }
 
-}
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/queue/MessagingConfiguration.java

@@ -0,0 +1,35 @@
+package com.iqser.red.service.redaction.v1.server.queue;
+
+import lombok.RequiredArgsConstructor;
+import org.springframework.amqp.core.Queue;
+import org.springframework.amqp.core.QueueBuilder;
+import org.springframework.context.annotation.Bean;
+import org.springframework.context.annotation.Configuration;
+
+@Configuration
+@RequiredArgsConstructor
+public class MessagingConfiguration {
+
+
+    public static final String REDACTION_QUEUE = "redactionQueue";
+
+    public static final String REDACTION_DQL = "redactionDQL";
+
+
+    @Bean
+    public Queue redactionQueue() {
+
+        return QueueBuilder.durable(REDACTION_QUEUE)
+                .withArgument("x-dead-letter-exchange", "")
+                .withArgument("x-dead-letter-routing-key", REDACTION_QUEUE)
+                .maxPriority(2)
+                .build();
+    }
+
+
+    @Bean
+    public Queue redactionDeadLetterQueue() {
+
+        return QueueBuilder.durable(REDACTION_DQL).build();
+    }
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/queue/RedactionMessageReceiver.java

@@ -0,0 +1,54 @@
+package com.iqser.red.service.redaction.v1.server.queue;
+
+import com.fasterxml.jackson.core.JsonProcessingException;
+import com.fasterxml.jackson.databind.ObjectMapper;
+import com.iqser.red.service.redaction.v1.model.AnalyzeRequest;
+import com.iqser.red.service.redaction.v1.model.AnalyzeResult;
+import com.iqser.red.service.redaction.v1.server.client.FileStatusProcessingUpdateClient;
+import com.iqser.red.service.redaction.v1.server.redaction.service.ReanalyzeService;
+import lombok.RequiredArgsConstructor;
+import lombok.extern.slf4j.Slf4j;
+import org.springframework.amqp.rabbit.annotation.RabbitHandler;
+import org.springframework.amqp.rabbit.annotation.RabbitListener;
+import org.springframework.stereotype.Service;
+
+import static com.iqser.red.service.redaction.v1.server.queue.MessagingConfiguration.REDACTION_DQL;
+import static com.iqser.red.service.redaction.v1.server.queue.MessagingConfiguration.REDACTION_QUEUE;
+
+@Slf4j
+@Service
+@RequiredArgsConstructor
+public class RedactionMessageReceiver {
+
+    private final ObjectMapper objectMapper;
+    private final ReanalyzeService reanalyzeService;
+    private final FileStatusProcessingUpdateClient fileStatusProcessingUpdateClient;
+
+    @RabbitHandler
+    @RabbitListener(queues = REDACTION_QUEUE)
+    public void receiveAnalyzeRequest(String in) throws JsonProcessingException {
+
+        var analyzeRequest = objectMapper.readValue(in, AnalyzeRequest.class);
+        log.info("Processing analyze request: {}", analyzeRequest);
+        AnalyzeResult result;
+        if (analyzeRequest.isReanalyseOnlyIfPossible()) {
+            result = reanalyzeService.reanalyze(analyzeRequest);
+        } else {
+            result = reanalyzeService.analyze(analyzeRequest);
+        }
+        log.info("Successfully analyzed {}", analyzeRequest);
+
+        fileStatusProcessingUpdateClient.analysisSuccessful(analyzeRequest.getProjectId(), analyzeRequest.getFileId(), result);
+    }
+
+    @RabbitHandler
+    @RabbitListener(queues = REDACTION_DQL)
+    public void receiveAnalyzeRequestDQL(String in) throws JsonProcessingException {
+
+        var analyzeRequest = objectMapper.readValue(in, AnalyzeRequest.class);
+        log.info("Failed to process analyze request: {}", analyzeRequest);
+
+        fileStatusProcessingUpdateClient.analysisFailed(analyzeRequest.getProjectId(), analyzeRequest.getFileId());
+    }
+
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/model/CellValue.java

@@ -1,22 +1,25 @@
 package com.iqser.red.service.redaction.v1.server.redaction.model;
 
-import java.util.Iterator;
-import java.util.List;
-
 import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
 import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
 import com.iqser.red.service.redaction.v1.server.redaction.utils.TextNormalizationUtilities;
+import lombok.AllArgsConstructor;
+import lombok.Data;
+import lombok.NoArgsConstructor;
 
-import lombok.Value;
+import java.util.ArrayList;
+import java.util.Iterator;
+import java.util.List;
 
-@Value
+@Data
+@NoArgsConstructor
+@AllArgsConstructor
 public class CellValue {
 
-    private List<TextBlock> textBlocks;
+    private List<TextBlock> textBlocks = new ArrayList<>();
 
     private int rowSpanStart;
 
-
     @Override
     public String toString() {
 
@@ -47,4 +50,4 @@ public class CellValue {
                 .replaceAll(" {2}", " ");
     }
 
-}
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/model/Dictionary.java

@@ -1,13 +1,13 @@
 package com.iqser.red.service.redaction.v1.server.redaction.model;
 
+import lombok.Data;
+import lombok.Getter;
+
 import java.util.HashMap;
 import java.util.List;
 import java.util.Map;
 import java.util.Set;
 
-import lombok.Data;
-import lombok.Getter;
-
 @Data
 public class Dictionary {
 
@@ -18,18 +18,18 @@ public class Dictionary {
     private Map<String, DictionaryModel> localAccessMap = new HashMap<>();
 
     @Getter
-    private long version;
+    private DictionaryVersion version;
 
 
-    public Dictionary(List<DictionaryModel> dictionaryModels, long dictionaryVersion){
+    public Dictionary(List<DictionaryModel> dictionaryModels, DictionaryVersion version) {
         this.dictionaryModels = dictionaryModels;
         this.dictionaryModels.forEach(dm -> localAccessMap.put(dm.getType(), dm));
-        this.version = dictionaryVersion;
+        this.version = version;
     }
 
 
-    public int getDictionaryRank(String type){
-        if(!localAccessMap.containsKey(type)){
+    public int getDictionaryRank(String type) {
+        if (!localAccessMap.containsKey(type)) {
             return 0;
         }
         return localAccessMap.get(type).getRank();
@@ -60,7 +60,7 @@ public class Dictionary {
 
     public boolean containsValue(String type, String value) {
 
-        if (localAccessMap.containsKey(type) && localAccessMap.get(type)
+        return localAccessMap.containsKey(type) && localAccessMap.get(type)
                 .getEntries()
                 .contains(value) || localAccessMap.containsKey(type) && localAccessMap.get(type)
                 .getLocalEntries()
@@ -68,10 +68,7 @@ public class Dictionary {
                 .getEntries()
                 .contains(value) || localAccessMap.containsKey(RECOMMENDATION_PREFIX + type) && localAccessMap.get(RECOMMENDATION_PREFIX + type)
                 .getLocalEntries()
-                .contains(value)) {
-            return true;
-        }
-        return false;
+                .contains(value);
     }
 
 

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/model/DictionaryIncrement.java

@@ -1,15 +1,15 @@
 package com.iqser.red.service.redaction.v1.server.redaction.model;
 
-import java.util.Set;
-
 import lombok.AllArgsConstructor;
 import lombok.Data;
 
+import java.util.Set;
+
 @Data
 @AllArgsConstructor
 public class DictionaryIncrement {
 
     private Set<DictionaryIncrementValue> values;
-    private long dictionaryVersion;
+    private DictionaryVersion dictionaryVersion;
 
 }

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/model/DictionaryModel.java

@@ -1,15 +1,14 @@
 package com.iqser.red.service.redaction.v1.server.redaction.model;
 
 
+import com.iqser.red.service.configuration.v1.api.model.DictionaryEntry;
+import lombok.AllArgsConstructor;
+import lombok.Data;
+
 import java.io.Serializable;
 import java.util.Set;
 import java.util.stream.Collectors;
 
-import com.iqser.red.service.configuration.v1.api.model.DictionaryEntry;
-
-import lombok.AllArgsConstructor;
-import lombok.Data;
-
 @Data
 @AllArgsConstructor
 public class DictionaryModel implements Serializable {
@@ -22,9 +21,10 @@ public class DictionaryModel implements Serializable {
     private boolean recommendation;
     private Set<DictionaryEntry> entries;
     private Set<String> localEntries;
+    private boolean isDossierDictionary;
 
-    public Set<String> getValues(boolean local){
-        return local ? localEntries : entries.stream().filter(e -> !e.isDeleted()).map(e-> e.getValue()).collect(Collectors
+    public Set<String> getValues(boolean local) {
+        return local ? localEntries : entries.stream().filter(e -> !e.isDeleted()).map(e -> e.getValue()).collect(Collectors
                 .toSet());
     }
 

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/model/DictionaryRepresentation.java

@@ -20,5 +20,4 @@ public class DictionaryRepresentation {
     private Map<String, DictionaryModel> localAccessMap = new HashMap<>();
 
 
-
 }

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/model/DictionaryVersion.java

@@ -0,0 +1,16 @@
+package com.iqser.red.service.redaction.v1.server.redaction.model;
+
+import lombok.AllArgsConstructor;
+import lombok.Builder;
+import lombok.Data;
+import lombok.NoArgsConstructor;
+
+@Data
+@Builder
+@NoArgsConstructor
+@AllArgsConstructor
+public class DictionaryVersion {
+
+    long rulesetVersion;
+    long dossierVersion;
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/model/Entity.java

@@ -1,13 +1,12 @@
 package com.iqser.red.service.redaction.v1.server.redaction.model;
 
+import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
+import lombok.Data;
+import lombok.EqualsAndHashCode;
+
 import java.util.ArrayList;
 import java.util.List;
 
-import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
-
-import lombok.Data;
-import lombok.EqualsAndHashCode;
-
 @Data
 @EqualsAndHashCode(onlyExplicitlyIncluded = true)
 public class Entity {
@@ -38,8 +37,10 @@ public class Entity {
     private String textBefore;
     private String textAfter;
 
+    private boolean isDossierDictionaryEntry;
 
-    public Entity(String word, String type, boolean redaction, String redactionReason, List<EntityPositionSequence> positionSequences, String headline, int matchedRule, int sectionNumber, String legalBasis, boolean isDictionaryEntry, String textBefore, String textAfter, Integer start, Integer end) {
+
+    public Entity(String word, String type, boolean redaction, String redactionReason, List<EntityPositionSequence> positionSequences, String headline, int matchedRule, int sectionNumber, String legalBasis, boolean isDictionaryEntry, String textBefore, String textAfter, Integer start, Integer end, boolean isDossierDictionaryEntry) {
 
         this.word = word;
         this.type = type;
@@ -55,10 +56,11 @@ public class Entity {
         this.textAfter = textAfter;
         this.start = start;
         this.end = end;
+        this.isDossierDictionaryEntry = isDossierDictionaryEntry;
     }
 
 
-    public Entity(String word, String type, Integer start, Integer end, String headline, int sectionNumber, boolean isDictionaryEntry) {
+    public Entity(String word, String type, Integer start, Integer end, String headline, int sectionNumber, boolean isDictionaryEntry, boolean isDossierDictionaryEntry) {
 
         this.word = word;
         this.type = type;
@@ -67,6 +69,7 @@ public class Entity {
         this.headline = headline;
         this.sectionNumber = sectionNumber;
         this.isDictionaryEntry = isDictionaryEntry;
+        this.isDossierDictionaryEntry = isDossierDictionaryEntry;
     }
 
 }

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/model/EntityPositionSequence.java

@@ -1,24 +1,23 @@
 package com.iqser.red.service.redaction.v1.server.redaction.model;
 
-import java.util.ArrayList;
-import java.util.List;
-
 import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
-
 import lombok.AllArgsConstructor;
 import lombok.Data;
 import lombok.EqualsAndHashCode;
 import lombok.RequiredArgsConstructor;
 
+import java.util.ArrayList;
+import java.util.List;
+
 @Data
 @RequiredArgsConstructor
 @AllArgsConstructor
 @EqualsAndHashCode
 public class EntityPositionSequence {
 
+    private final String id;
     @EqualsAndHashCode.Exclude
     private List<TextPositionSequence> sequences = new ArrayList<>();
     private int pageNumber;
-    private final String id;
 
 }

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/model/Image.java

@@ -1,7 +1,5 @@
 package com.iqser.red.service.redaction.v1.server.redaction.model;
 
-import java.awt.geom.Rectangle2D;
-
 import lombok.AllArgsConstructor;
 import lombok.Builder;
 import lombok.Data;
@@ -14,7 +12,7 @@ import lombok.NoArgsConstructor;
 public class Image {
 
     private String type;
-    private Rectangle2D position;
+    private RedRectangle2D position;
     private boolean redaction;
     private String redactionReason;
     private String legalBasis;

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/model/PdfImage.java

@@ -1,28 +1,31 @@
 package com.iqser.red.service.redaction.v1.server.redaction.model;
 
+import com.fasterxml.jackson.annotation.JsonIgnore;
+import lombok.Data;
+import lombok.NonNull;
+import lombok.RequiredArgsConstructor;
+
 import java.awt.geom.Rectangle2D;
 import java.awt.image.BufferedImage;
 
-import lombok.AllArgsConstructor;
-import lombok.Data;
-import lombok.NoArgsConstructor;
-import lombok.NonNull;
-import lombok.RequiredArgsConstructor;
-
 @Data
-@NoArgsConstructor
-@AllArgsConstructor
 @RequiredArgsConstructor
 public class PdfImage {
 
-    @NonNull
+    @JsonIgnore
     private BufferedImage image;
     @NonNull
-    private Rectangle2D position;
+    private RedRectangle2D position;
     private ImageType imageType;
     private boolean isAppendedToParagraph;
 
     @NonNull
     private int page;
 
-}
+    public PdfImage(BufferedImage image, Rectangle2D position, int page) {
+        this.image = image;
+        this.position = new RedRectangle2D(position.getX(), position.getY(), position.getWidth(), position.getHeight());
+        this.page = page;
+    }
+
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/model/ReanalysisSection.java

@@ -1,37 +0,0 @@
-package com.iqser.red.service.redaction.v1.server.redaction.model;
-
-import java.util.HashMap;
-import java.util.HashSet;
-import java.util.List;
-import java.util.Map;
-import java.util.Set;
-
-import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
-
-import lombok.Data;
-import lombok.NoArgsConstructor;
-
-@Data
-@NoArgsConstructor
-public class ReanalysisSection {
-
-    private int sectionNumber;
-    private String headline;
-    private List<TextBlock> textBlocks;
-    private Map<String, CellValue> tabularData = new HashMap<>();
-    private List<Integer> cellStarts;
-    private Set<Image> images = new HashSet<>();
-
-
-    public SearchableText getSearchableText() {
-
-        SearchableText searchableText = new SearchableText();
-        textBlocks.forEach(block -> {
-            if (block instanceof TextBlock) {
-                searchableText.addAll(block.getSequences());
-            }
-        });
-        return searchableText;
-    }
-
-}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/model/RedRectangle2D.java

@@ -0,0 +1,35 @@
+package com.iqser.red.service.redaction.v1.server.redaction.model;
+
+
+import com.fasterxml.jackson.annotation.JsonIgnore;
+import lombok.AllArgsConstructor;
+import lombok.Data;
+import lombok.NoArgsConstructor;
+
+@Data
+@NoArgsConstructor
+@AllArgsConstructor
+public class RedRectangle2D {
+
+    private double x;
+    private double y;
+    private double width;
+    private double height;
+
+    @JsonIgnore
+    public boolean isEmpty() {
+        return width <= 0.0f || height <= 0.0f;
+    }
+
+    public boolean contains(double x, double y, double w, double h) {
+        if (isEmpty() || w <= 0 || h <= 0) {
+            return false;
+        }
+        double x0 = getX();
+        double y0 = getY();
+        return x >= x0 &&
+                y >= y0 &&
+                (x + w) <= x0 + getWidth() &&
+                (y + h) <= y0 + getHeight();
+    }
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/model/SearchableText.java

@@ -1,14 +1,14 @@
 package com.iqser.red.service.redaction.v1.server.redaction.model;
 
+import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
+import com.iqser.red.service.redaction.v1.server.redaction.utils.IdBuilder;
+import com.iqser.red.service.redaction.v1.server.redaction.utils.TextNormalizationUtilities;
+
 import java.util.ArrayList;
 import java.util.Collections;
 import java.util.List;
 import java.util.regex.Pattern;
 
-import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
-import com.iqser.red.service.redaction.v1.server.redaction.utils.IdBuilder;
-import com.iqser.red.service.redaction.v1.server.redaction.utils.TextNormalizationUtilities;
-
 public class SearchableText {
 
     private final List<TextPositionSequence> sequences = new ArrayList<>();
@@ -232,4 +232,4 @@ public class SearchableText {
         return sb.append("\n").toString();
     }
 
-}
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/model/Section.java

@@ -1,6 +1,12 @@
 package com.iqser.red.service.redaction.v1.server.redaction.model;
 
-import static com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary.RECOMMENDATION_PREFIX;
+import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
+import com.iqser.red.service.redaction.v1.server.redaction.utils.EntitySearchUtils;
+import com.iqser.red.service.redaction.v1.server.redaction.utils.Patterns;
+import lombok.Builder;
+import lombok.Data;
+import lombok.extern.slf4j.Slf4j;
+import org.apache.commons.lang3.StringUtils;
 
 import java.util.Collection;
 import java.util.HashMap;
@@ -11,15 +17,7 @@ import java.util.regex.Matcher;
 import java.util.regex.Pattern;
 import java.util.stream.Collectors;
 
-import org.apache.commons.lang3.StringUtils;
-
-import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
-import com.iqser.red.service.redaction.v1.server.redaction.utils.EntitySearchUtils;
-import com.iqser.red.service.redaction.v1.server.redaction.utils.Patterns;
-
-import lombok.Builder;
-import lombok.Data;
-import lombok.extern.slf4j.Slf4j;
+import static com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary.RECOMMENDATION_PREFIX;
 
 @Data
 @Slf4j
@@ -413,7 +411,7 @@ public class Section {
         String text = caseInsensitive ? searchText.toLowerCase() : searchText;
         String searchValue = caseInsensitive ? value.toLowerCase() : value;
 
-        Set<Entity> found = EntitySearchUtils.find(text, Set.of(searchValue), asType, headline, sectionNumber, true);
+        Set<Entity> found = EntitySearchUtils.find(text, Set.of(searchValue), asType, headline, sectionNumber, true, false);
 
         found.forEach(entity -> {
             if (redacted) {
@@ -439,7 +437,7 @@ public class Section {
         } else {
             String word = value.toString();
 
-            Entity entity = new Entity(word, type, value.getRowSpanStart(), value.getRowSpanStart() + word.length(), headline, sectionNumber, false);
+            Entity entity = new Entity(word, type, value.getRowSpanStart(), value.getRowSpanStart() + word.length(), headline, sectionNumber, false, false);
             entity.setRedaction(redact);
             entity.setMatchedRule(ruleNumber);
             entity.setRedactionReason(reason);

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/service/AnalyzeResponseService.java

@@ -0,0 +1,48 @@
+package com.iqser.red.service.redaction.v1.server.redaction.service;
+
+import com.iqser.red.service.redaction.v1.model.AnalyzeResult;
+import com.iqser.red.service.redaction.v1.model.RedactionChangeLog;
+import com.iqser.red.service.redaction.v1.model.RedactionLog;
+import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
+import org.springframework.stereotype.Service;
+
+@Service
+public class AnalyzeResponseService {
+
+    public AnalyzeResult createAnalyzeResponse(String projectId, String fileId, long duration, int pageCount, RedactionLog redactionLog, RedactionChangeLog redactionChangeLog) {
+        boolean hasHints = redactionLog.getRedactionLogEntry().stream().anyMatch(RedactionLogEntry::isHint);
+
+        boolean hasRequests = redactionLog.getRedactionLogEntry()
+                .stream()
+                .anyMatch(entry -> entry.isManual() && entry.getStatus()
+                        .equals(com.iqser.red.service.redaction.v1.model.Status.REQUESTED));
+
+        boolean hasRedactions = redactionLog.getRedactionLogEntry()
+                .stream()
+                .anyMatch(entry -> entry.isRedacted() && !entry.isManual() || entry.isManual() && entry.getStatus()
+                        .equals(com.iqser.red.service.redaction.v1.model.Status.APPROVED));
+
+        boolean hasImages = redactionLog.getRedactionLogEntry()
+                .stream()
+                .anyMatch(entry -> entry.isHint() && entry.getType().equals("image"));
+
+        boolean hasUpdates = redactionChangeLog != null && redactionChangeLog.getRedactionLogEntry() != null && !redactionChangeLog
+                .getRedactionLogEntry()
+                .isEmpty() && redactionChangeLog.getRedactionLogEntry().stream().anyMatch(entry -> !entry.getType().equals("false_positive"));
+
+        return AnalyzeResult.builder()
+                .projectId(projectId)
+                .fileId(fileId)
+                .duration(duration)
+                .numberOfPages(pageCount)
+                .hasHints(hasHints)
+                .hasRedactions(hasRedactions)
+                .hasRequests(hasRequests)
+                .hasImages(hasImages)
+                .hasUpdates(hasUpdates)
+                .rulesVersion(redactionLog.getRulesVersion())
+                .dictionaryVersion(redactionLog.getDictionaryVersion())
+                .dossierDictionaryVersion(redactionLog.getDossierDictionaryVersion())
+                .build();
+    }
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/service/AnnotationService.java

@@ -1,14 +1,7 @@
 package com.iqser.red.service.redaction.v1.server.redaction.service;
 
-import java.awt.Color;
-import java.io.IOException;
-import java.util.ArrayList;
-import java.util.GregorianCalendar;
-import java.util.HashMap;
-import java.util.List;
-import java.util.Map;
-import java.util.stream.Collectors;
-
+import com.iqser.red.service.redaction.v1.model.*;
+import lombok.RequiredArgsConstructor;
 import org.apache.pdfbox.pdmodel.PDDocument;
 import org.apache.pdfbox.pdmodel.PDPage;
 import org.apache.pdfbox.pdmodel.PDPageContentStream;
@@ -21,15 +14,14 @@ import org.apache.pdfbox.pdmodel.interactive.annotation.PDAnnotationText;
 import org.apache.pdfbox.pdmodel.interactive.annotation.PDAnnotationTextMarkup;
 import org.springframework.stereotype.Service;
 
-import com.iqser.red.service.redaction.v1.model.CellRectangle;
-import com.iqser.red.service.redaction.v1.model.Comment;
-import com.iqser.red.service.redaction.v1.model.Rectangle;
-import com.iqser.red.service.redaction.v1.model.RedactionLog;
-import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
-import com.iqser.red.service.redaction.v1.model.SectionGrid;
-import com.iqser.red.service.redaction.v1.model.SectionRectangle;
-
-import lombok.RequiredArgsConstructor;
+import java.awt.Color;
+import java.io.IOException;
+import java.util.ArrayList;
+import java.util.GregorianCalendar;
+import java.util.HashMap;
+import java.util.List;
+import java.util.Map;
+import java.util.stream.Collectors;
 
 @Service
 @RequiredArgsConstructor

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/service/DictionaryService.java

@@ -1,19 +1,6 @@
 package com.iqser.red.service.redaction.v1.server.redaction.service;
 
-import java.awt.Color;
-import java.util.ArrayList;
-import java.util.Comparator;
-import java.util.HashMap;
-import java.util.HashSet;
-import java.util.List;
-import java.util.Locale;
-import java.util.Map;
-import java.util.Set;
-import java.util.stream.Collectors;
-
-import org.apache.commons.collections4.CollectionUtils;
-import org.apache.commons.lang3.SerializationUtils;
-import org.springframework.stereotype.Service;
+import static com.iqser.red.service.configuration.v1.api.resource.DictionaryResource.GLOBAL_DOSSIER;
 
 import com.iqser.red.service.configuration.v1.api.model.Colors;
 import com.iqser.red.service.configuration.v1.api.model.DictionaryEntry;
@@ -25,10 +12,18 @@ import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryIncre
 import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryIncrementValue;
 import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryModel;
 import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryRepresentation;
+import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryVersion;
 
 import feign.FeignException;
 import lombok.RequiredArgsConstructor;
 import lombok.extern.slf4j.Slf4j;
+import org.apache.commons.collections4.CollectionUtils;
+import org.apache.commons.lang3.SerializationUtils;
+import org.springframework.stereotype.Service;
+
+import java.awt.Color;
+import java.util.*;
+import java.util.stream.Collectors;
 
 @Slf4j
 @Service
@@ -37,53 +32,69 @@ public class DictionaryService {
 
     private final DictionaryClient dictionaryClient;
 
-    private Map<String, DictionaryRepresentation> dictionariesByRuleSets = new HashMap<>();
+    private final Map<String, DictionaryRepresentation> dictionariesByRuleSets = new HashMap<>();
+    private final Map<String, DictionaryRepresentation> dictionariesByDossier = new HashMap<>();
 
 
-    public long updateDictionary(String ruleSetId) {
+    public DictionaryVersion updateDictionary(String ruleSetId, String dossierId) {
 
-        long version = dictionaryClient.getVersion(ruleSetId);
-
-        var foundDictionary = dictionariesByRuleSets.get(ruleSetId);
-
-        if (foundDictionary == null || version > foundDictionary.getDictionaryVersion()) {
-            updateDictionaryEntry(ruleSetId, version);
+        long rulesetDictionaryVersion = dictionaryClient.getVersion(ruleSetId, GLOBAL_DOSSIER);
+        var rulesetDictionary = dictionariesByRuleSets.get(ruleSetId);
+        if (rulesetDictionary == null || rulesetDictionaryVersion > rulesetDictionary.getDictionaryVersion()) {
+            updateDictionaryEntry(ruleSetId, rulesetDictionaryVersion, GLOBAL_DOSSIER);
         }
 
-        return version;
+        long dossierDictionaryVersion = dictionaryClient.getVersion(ruleSetId, dossierId);
+        var dossierDictionary = dictionariesByDossier.get(dossierId);
+        if (dossierDictionary == null || dossierDictionaryVersion > dossierDictionary.getDictionaryVersion()) {
+            updateDictionaryEntry(ruleSetId, dossierDictionaryVersion, dossierId);
+        }
+
+        return DictionaryVersion.builder().rulesetVersion(rulesetDictionaryVersion).dossierVersion(dossierDictionaryVersion).build();
     }
 
 
-    public DictionaryIncrement getDictionaryIncrements(String ruleSetId, long fromVersion) {
+    public DictionaryIncrement getDictionaryIncrements(String ruleSetId, DictionaryVersion fromVersion, String dossierId) {
 
-        long version = updateDictionary(ruleSetId);
+        DictionaryVersion version = updateDictionary(ruleSetId, dossierId);
 
         Set<DictionaryIncrementValue> newValues = new HashSet<>();
         List<DictionaryModel> dictionaryModels = dictionariesByRuleSets.get(ruleSetId).getDictionary();
         dictionaryModels.forEach(dictionaryModel -> {
             dictionaryModel.getEntries().forEach(dictionaryEntry -> {
-                if (dictionaryEntry.getVersion() > fromVersion) {
+                if (dictionaryEntry.getVersion() > fromVersion.getRulesetVersion()) {
                     newValues.add(new DictionaryIncrementValue(dictionaryEntry.getValue(), dictionaryModel.isCaseInsensitive()));
                 }
             });
         });
 
+        if(dictionariesByDossier.containsKey(dossierId)) {
+            dictionaryModels = dictionariesByDossier.get(dossierId).getDictionary();
+            dictionaryModels.forEach(dictionaryModel -> {
+                dictionaryModel.getEntries().forEach(dictionaryEntry -> {
+                    if (dictionaryEntry.getVersion() > fromVersion.getDossierVersion()) {
+                        newValues.add(new DictionaryIncrementValue(dictionaryEntry.getValue(), dictionaryModel.isCaseInsensitive()));
+                    }
+                });
+            });
+        }
+
         return new DictionaryIncrement(newValues, version);
     }
 
 
-    private void updateDictionaryEntry(String ruleSetId, long version) {
+    private void updateDictionaryEntry(String ruleSetId, long version, String dossierId) {
 
         try {
             DictionaryRepresentation dictionaryRepresentation = new DictionaryRepresentation();
 
-            TypeResponse typeResponse = dictionaryClient.getAllTypes(ruleSetId);
+            TypeResponse typeResponse = dictionaryClient.getAllTypes(ruleSetId, dossierId);
             if (typeResponse != null && CollectionUtils.isNotEmpty(typeResponse.getTypes())) {
 
                 List<DictionaryModel> dictionary = typeResponse.getTypes()
                         .stream()
                         .map(t -> new DictionaryModel(t.getType(), t.getRank(), convertColor(t.getHexColor()), t.isCaseInsensitive(), t
-                                .isHint(), t.isRecommendation(), convertEntries(t), new HashSet<>()))
+                                .isHint(), t.isRecommendation(), convertEntries(t, dossierId), new HashSet<>(),dossierId.equals(GLOBAL_DOSSIER) ? false : true))
                         .sorted(Comparator.comparingInt(DictionaryModel::getRank).reversed())
                         .collect(Collectors.toList());
 
@@ -99,7 +110,11 @@ public class DictionaryService {
                 dictionaryRepresentation.setDictionaryVersion(version);
                 dictionaryRepresentation.setDictionary(dictionary);
 
-                dictionariesByRuleSets.put(ruleSetId, dictionaryRepresentation);
+                if(dossierId.equals(GLOBAL_DOSSIER)) {
+                    dictionariesByRuleSets.put(ruleSetId, dictionaryRepresentation);
+                } else {
+                    dictionariesByDossier.put(dossierId, dictionaryRepresentation);
+                }
             }
         } catch (FeignException e) {
             log.warn("Got some unknown feignException", e);
@@ -112,19 +127,19 @@ public class DictionaryService {
 
         dictionary.getDictionaryModels().forEach(dm -> {
             if (dm.isRecommendation() && !dm.getLocalEntries().isEmpty()) {
-                dictionaryClient.addEntries(dm.getType(), ruleSetId, new ArrayList<>(dm.getLocalEntries()), false);
-                long externalVersion = dictionaryClient.getVersion(ruleSetId);
-                if (externalVersion == dictionary.getVersion() + 1) {
-                    dictionary.setVersion(externalVersion);
+                dictionaryClient.addEntries(dm.getType(), ruleSetId, new ArrayList<>(dm.getLocalEntries()), false, GLOBAL_DOSSIER);
+                long externalVersion = dictionaryClient.getVersion(ruleSetId, GLOBAL_DOSSIER);
+                if (externalVersion == dictionary.getVersion().getRulesetVersion() + 1) {
+                    dictionary.getVersion().setRulesetVersion(externalVersion);
                 }
             }
         });
     }
 
 
-    private Set<DictionaryEntry> convertEntries(TypeResult t) {
+    private Set<DictionaryEntry> convertEntries(TypeResult t, String dossierId) {
 
-        Set<DictionaryEntry> entries = new HashSet<>(dictionaryClient.getDictionaryForType(t.getType(), t.getRuleSetId())
+        Set<DictionaryEntry> entries = new HashSet<>(dictionaryClient.getDictionaryForType(t.getType(), t.getRuleSetId(), dossierId)
                 .getEntries());
 
         if (t.isCaseInsensitive()) {
@@ -181,17 +196,26 @@ public class DictionaryService {
     }
 
 
-    public Dictionary getDeepCopyDictionary(String ruleSetId) {
+    public Dictionary getDeepCopyDictionary(String ruleSetId, String dossierId) {
 
         List<DictionaryModel> copy = new ArrayList<>();
 
-        var representation = dictionariesByRuleSets.get(ruleSetId);
-        var dictionary = dictionariesByRuleSets.get(ruleSetId).getDictionary();
-        dictionary.forEach(dm -> {
+        var rulesetRepresentation = dictionariesByRuleSets.get(ruleSetId);
+        rulesetRepresentation.getDictionary().forEach(dm -> {
             copy.add(SerializationUtils.clone(dm));
         });
 
-        return new Dictionary(copy, representation.getDictionaryVersion());
+        //TODO merge dictionaries if they have same names
+        long dossierDictionaryVersion = -1;
+        if(dictionariesByDossier.containsKey(dossierId)) {
+            var dossierRepresentation = dictionariesByDossier.get(dossierId);
+            dossierRepresentation.getDictionary().forEach(dm -> {
+                copy.add(SerializationUtils.clone(dm));
+            });
+            dossierDictionaryVersion = dossierRepresentation.getDictionaryVersion();
+        }
+
+        return new Dictionary(copy, DictionaryVersion.builder().rulesetVersion(rulesetRepresentation.getDictionaryVersion()).dossierVersion(dossierDictionaryVersion).build());
     }
 
 
@@ -212,4 +236,4 @@ public class DictionaryService {
         return dictionariesByRuleSets.get(ruleSetId).getRequestAddColor();
     }
 
-}
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/service/DroolsExecutionService.java

@@ -1,11 +1,10 @@
 package com.iqser.red.service.redaction.v1.server.redaction.service;
 
-import java.io.ByteArrayInputStream;
-import java.io.InputStream;
-import java.nio.charset.StandardCharsets;
-import java.util.HashMap;
-import java.util.Map;
-
+import com.iqser.red.service.configuration.v1.api.model.RulesResponse;
+import com.iqser.red.service.redaction.v1.server.client.RulesClient;
+import com.iqser.red.service.redaction.v1.server.exception.RulesValidationException;
+import com.iqser.red.service.redaction.v1.server.redaction.model.Section;
+import lombok.RequiredArgsConstructor;
 import org.apache.commons.lang3.StringUtils;
 import org.kie.api.KieServices;
 import org.kie.api.builder.KieBuilder;
@@ -15,12 +14,11 @@ import org.kie.api.runtime.KieContainer;
 import org.kie.api.runtime.KieSession;
 import org.springframework.stereotype.Service;
 
-import com.iqser.red.service.configuration.v1.api.model.RulesResponse;
-import com.iqser.red.service.redaction.v1.server.client.RulesClient;
-import com.iqser.red.service.redaction.v1.server.exception.RulesValidationException;
-import com.iqser.red.service.redaction.v1.server.redaction.model.Section;
-
-import lombok.RequiredArgsConstructor;
+import java.io.ByteArrayInputStream;
+import java.io.InputStream;
+import java.nio.charset.StandardCharsets;
+import java.util.HashMap;
+import java.util.Map;
 
 @Service
 @RequiredArgsConstructor
@@ -28,9 +26,9 @@ public class DroolsExecutionService {
 
     private final RulesClient rulesClient;
 
-    private Map<String, KieContainer> kieContainers = new HashMap<>();
+    private final Map<String, KieContainer> kieContainers = new HashMap<>();
 
-    private Map<String, Long> rulesVersionPerRuleSetId = new HashMap<>();
+    private final Map<String, Long> rulesVersionPerRuleSetId = new HashMap<>();
 
 
     public KieContainer getKieContainer(String ruleSetId) {
@@ -133,4 +131,4 @@ public class DroolsExecutionService {
         return rulesVersion.longValue();
     }
 
-}
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/service/EntityRedactionService.java

@@ -1,50 +1,27 @@
 package com.iqser.red.service.redaction.v1.server.redaction.service;
 
-import java.util.ArrayList;
-import java.util.HashMap;
-import java.util.HashSet;
-import java.util.List;
-import java.util.Locale;
-import java.util.Map;
-import java.util.Set;
-import java.util.concurrent.atomic.AtomicInteger;
-import java.util.stream.Collectors;
-import java.util.stream.Stream;
-
-import org.apache.commons.collections4.CollectionUtils;
-import org.apache.commons.lang3.StringUtils;
-import org.kie.api.runtime.KieContainer;
-import org.springframework.stereotype.Service;
-
 import com.iqser.red.service.redaction.v1.model.ManualRedactionEntry;
 import com.iqser.red.service.redaction.v1.model.ManualRedactions;
 import com.iqser.red.service.redaction.v1.model.Point;
 import com.iqser.red.service.redaction.v1.model.Rectangle;
 import com.iqser.red.service.redaction.v1.model.SectionArea;
-import com.iqser.red.service.redaction.v1.model.SectionText;
-import com.iqser.red.service.redaction.v1.server.classification.model.Document;
-import com.iqser.red.service.redaction.v1.server.classification.model.Footer;
-import com.iqser.red.service.redaction.v1.server.classification.model.Header;
-import com.iqser.red.service.redaction.v1.server.classification.model.Paragraph;
-import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
-import com.iqser.red.service.redaction.v1.server.classification.model.UnclassifiedText;
-import com.iqser.red.service.redaction.v1.server.redaction.model.CellValue;
+import com.iqser.red.service.redaction.v1.server.classification.model.*;
 import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
-import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryModel;
-import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
-import com.iqser.red.service.redaction.v1.server.redaction.model.EntityPositionSequence;
-import com.iqser.red.service.redaction.v1.server.redaction.model.Image;
-import com.iqser.red.service.redaction.v1.server.redaction.model.ImageType;
-import com.iqser.red.service.redaction.v1.server.redaction.model.PdfImage;
-import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
-import com.iqser.red.service.redaction.v1.server.redaction.model.Section;
-import com.iqser.red.service.redaction.v1.server.redaction.model.SectionSearchableTextPair;
+import com.iqser.red.service.redaction.v1.server.redaction.model.*;
 import com.iqser.red.service.redaction.v1.server.redaction.utils.EntitySearchUtils;
 import com.iqser.red.service.redaction.v1.server.tableextraction.model.Cell;
 import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
-
 import lombok.RequiredArgsConstructor;
 import lombok.extern.slf4j.Slf4j;
+import org.apache.commons.collections4.CollectionUtils;
+import org.apache.commons.lang3.StringUtils;
+import org.kie.api.runtime.KieContainer;
+import org.springframework.stereotype.Service;
+
+import java.util.*;
+import java.util.concurrent.atomic.AtomicInteger;
+import java.util.stream.Collectors;
+import java.util.stream.Stream;
 
 @Slf4j
 @Service
@@ -56,13 +33,13 @@ public class EntityRedactionService {
     private final SurroundingWordsService surroundingWordsService;
 
 
-    public void processDocument(Document classifiedDoc, String ruleSetId, ManualRedactions manualRedactions) {
+    public void processDocument(Document classifiedDoc, String ruleSetId, ManualRedactions manualRedactions, String dossierId) {
 
-        dictionaryService.updateDictionary(ruleSetId);
+        dictionaryService.updateDictionary(ruleSetId, dossierId);
         KieContainer container = droolsExecutionService.updateRules(ruleSetId);
         long rulesVersion = droolsExecutionService.getRulesVersion(ruleSetId);
 
-        Dictionary dictionary = dictionaryService.getDeepCopyDictionary(ruleSetId);
+        Dictionary dictionary = dictionaryService.getDeepCopyDictionary(ruleSetId, dossierId);
 
         Set<Entity> documentEntities = new HashSet<>(findEntities(classifiedDoc, container, manualRedactions, dictionary, false, null));
 
@@ -94,7 +71,7 @@ public class EntityRedactionService {
                         .add(new Entity(entity.getWord(), entity.getType(), entity.isRedaction(), entity.getRedactionReason(), entry
                                 .getValue(), entity.getHeadline(), entity.getMatchedRule(), entity.getSectionNumber(), entity
                                 .getLegalBasis(), entity.isDictionaryEntry(), entity.getTextBefore(), entity.getTextAfter(), entity
-                                .getStart(), entity.getEnd()));
+                                .getStart(), entity.getEnd(), entity.isDossierDictionaryEntry()));
             }
         }
 
@@ -210,6 +187,7 @@ public class EntityRedactionService {
                         .get(0)
                         .getPage());
                 sectionText.getSectionAreas().add(sectionArea);
+                sectionText.getTextBlocks().addAll(cell.getTextBlocks());
 
                 addSectionToManualRedactions(cell.getTextBlocks(), manualRedactions, table.getHeadline(), sectionNumber.intValue());
                 int cellStart = start;
@@ -258,6 +236,8 @@ public class EntityRedactionService {
                 sectionText.setHeadline(table.getHeadline());
                 sectionText.setSectionNumber(sectionNumber.intValue());
                 sectionText.setTable(true);
+                sectionText.setTabularData(tabularData);
+                sectionText.setCellStarts(cellStarts);
                 classifiedDoc.getSectionText().add(sectionText);
             }
 
@@ -290,6 +270,7 @@ public class EntityRedactionService {
                             .getSequences()
                             .get(0)
                             .getPage());
+                    sectionText.getTextBlocks().addAll(cell.getTextBlocks());
                     sectionText.getSectionAreas().add(sectionArea);
                 }
 
@@ -348,6 +329,10 @@ public class EntityRedactionService {
             sectionText.setHeadline(headline);
             sectionText.setSectionNumber(sectionNumber.intValue());
             sectionText.setTable(false);
+            sectionText.setImages(images.stream()
+                    .map(image -> convert(image, sectionNumber.intValue(), headline))
+                    .collect(Collectors.toSet()));
+            sectionText.setTextBlocks(paragraphTextBlocks);
             classifiedDoc.getSectionText().add(sectionText);
         }
 
@@ -386,9 +371,9 @@ public class EntityRedactionService {
         String lowercaseInputString = searchableString.toLowerCase();
         for (DictionaryModel model : dictionary.getDictionaryModels()) {
             if (model.isCaseInsensitive()) {
-                found.addAll(EntitySearchUtils.find(lowercaseInputString, model.getValues(local), model.getType(), headline, sectionNumber, local));
+                found.addAll(EntitySearchUtils.find(lowercaseInputString, model.getValues(local), model.getType(), headline, sectionNumber, local, model.isDossierDictionary()));
             } else {
-                found.addAll(EntitySearchUtils.find(searchableString, model.getValues(local), model.getType(), headline, sectionNumber, local));
+                found.addAll(EntitySearchUtils.find(searchableString, model.getValues(local), model.getType(), headline, sectionNumber, local, model.isDossierDictionary()));
             }
         }
 

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/service/ImageClassificationService.java

@@ -1,21 +1,17 @@
 package com.iqser.red.service.redaction.v1.server.redaction.service;
 
-import java.io.ByteArrayOutputStream;
-import java.io.IOException;
-
-import javax.imageio.ImageIO;
-
-import org.springframework.stereotype.Service;
-
-import com.iqser.red.service.redaction.v1.server.classification.model.Document;
+import com.iqser.red.service.redaction.v1.server.classification.model.Page;
 import com.iqser.red.service.redaction.v1.server.client.ImageClassificationClient;
 import com.iqser.red.service.redaction.v1.server.client.ImageClassificationResponse;
 import com.iqser.red.service.redaction.v1.server.client.MockMultipartFile;
 import com.iqser.red.service.redaction.v1.server.redaction.model.ImageType;
 import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
-
 import lombok.RequiredArgsConstructor;
 import lombok.extern.slf4j.Slf4j;
+import org.springframework.stereotype.Service;
+
+import javax.imageio.ImageIO;
+import java.io.ByteArrayOutputStream;
 
 @Slf4j
 @Service
@@ -26,37 +22,41 @@ public class ImageClassificationService {
     private final RedactionServiceSettings settings;
 
 
-    public void classifyImages(Document classifiedDoc) {
+    public void classifyImages(Page page) {
 
-        long start = System.currentTimeMillis();
-        classifiedDoc.getPages().forEach(page -> {
-            page.getImages().forEach(image -> {
+        page.getImages().forEach(image -> {
 
-                if (settings.isEnableImageClassification()) {
-                    try (ByteArrayOutputStream baos = new ByteArrayOutputStream()) {
-                        ImageIO.write(image.getImage(), "png", baos);
-                        ImageClassificationResponse response = imageClassificationClient.classify(new MockMultipartFile("file", "Image.png", "image/png", baos
-                                .toByteArray()));
-                        image.setImageType(ImageType.valueOf(response.getCategory()));
+            if (settings.isEnableImageClassification()) {
 
-                    } catch (IOException e) {
-                        log.error("Could not classify image", e);
-                    }
-                } else {
+                long start = System.currentTimeMillis();
+                try (ByteArrayOutputStream baos = new ByteArrayOutputStream()) {
+                    ImageIO.write(image.getImage(), "png", baos);
+                    var mockFile = new MockMultipartFile("file", "Image.png", "image/png", baos.toByteArray());
+                    ImageClassificationResponse response = imageClassificationClient.classify(mockFile);
+                    image.setImageType(ImageType.valueOf(response.getCategory()));
+                } catch (Exception e) {
+                    log.error("Could not classify image", e);
                     image.setImageType(ImageType.OTHER);
                 }
 
-                if (image.getImageType().equals(ImageType.OTHER)) {
-                    page.getTextBlocks().forEach(textblock -> {
-                        if (image.getPosition()
-                                .contains(textblock.getMinX(), textblock.getMinY(), textblock.getWidth(), textblock.getHeight())) {
-                            image.setImageType(ImageType.OCR);
-                        }
-                    });
-                }
-            });
+                log.info("Image classification took: " + (System.currentTimeMillis() - start));
+            } else {
+                image.setImageType(ImageType.OTHER);
+            }
+
+            image.getImage().flush();
+            image.setImage(null);
+
+            if (image.getImageType().equals(ImageType.OTHER)) {
+                page.getTextBlocks().forEach(textblock -> {
+                    if (image.getPosition()
+                            .contains(textblock.getMinX(), textblock.getMinY(), textblock.getWidth(), textblock.getHeight())) {
+                        image.setImageType(ImageType.OCR);
+                    }
+                });
+            }
         });
-        log.info("Image classification took: " + (System.currentTimeMillis() - start));
+
     }
 
 }

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/service/ReanalyzeService.java

@@ -1,53 +1,30 @@
 package com.iqser.red.service.redaction.v1.server.redaction.service;
 
-import java.awt.geom.Rectangle2D;
-import java.io.ByteArrayInputStream;
-import java.util.ArrayList;
-import java.util.HashMap;
-import java.util.HashSet;
-import java.util.Iterator;
-import java.util.List;
-import java.util.Map;
-import java.util.Set;
-import java.util.stream.Collectors;
-import java.util.stream.Stream;
+import com.iqser.red.service.file.management.v1.api.model.FileType;
+import com.iqser.red.service.redaction.v1.model.*;
+import com.iqser.red.service.redaction.v1.server.classification.model.Document;
+import com.iqser.red.service.redaction.v1.server.classification.model.SectionText;
+import com.iqser.red.service.redaction.v1.server.classification.model.Text;
+import com.iqser.red.service.redaction.v1.server.exception.RedactionException;
+import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
+import com.iqser.red.service.redaction.v1.server.redaction.model.*;
+import com.iqser.red.service.redaction.v1.server.redaction.utils.EntitySearchUtils;
+import com.iqser.red.service.redaction.v1.server.segmentation.PdfSegmentationService;
+import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
+
+import lombok.RequiredArgsConstructor;
+import lombok.SneakyThrows;
+import lombok.extern.slf4j.Slf4j;
 
-import org.apache.pdfbox.pdmodel.PDDocument;
-import org.apache.pdfbox.pdmodel.PDPage;
-import org.apache.pdfbox.pdmodel.common.PDRectangle;
 import org.kie.api.runtime.KieContainer;
 import org.springframework.stereotype.Service;
 import org.springframework.web.bind.annotation.RequestBody;
 
-import com.iqser.red.service.redaction.v1.model.Comment;
-import com.iqser.red.service.redaction.v1.model.IdRemoval;
-import com.iqser.red.service.redaction.v1.model.ManualForceRedact;
-import com.iqser.red.service.redaction.v1.model.ManualRedactionEntry;
-import com.iqser.red.service.redaction.v1.model.ManualRedactions;
-import com.iqser.red.service.redaction.v1.model.ReanalyzeResult;
-import com.iqser.red.service.redaction.v1.model.Rectangle;
-import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
-import com.iqser.red.service.redaction.v1.model.RenalyzeRequest;
-import com.iqser.red.service.redaction.v1.model.SectionArea;
-import com.iqser.red.service.redaction.v1.model.SectionText;
-import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
-import com.iqser.red.service.redaction.v1.server.exception.RedactionException;
-import com.iqser.red.service.redaction.v1.server.parsing.PDFAreaTextStripper;
-import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
-import com.iqser.red.service.redaction.v1.server.redaction.model.CellValue;
-import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
-import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryIncrement;
-import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
-import com.iqser.red.service.redaction.v1.server.redaction.model.EntityPositionSequence;
-import com.iqser.red.service.redaction.v1.server.redaction.model.Image;
-import com.iqser.red.service.redaction.v1.server.redaction.model.ReanalysisSection;
-import com.iqser.red.service.redaction.v1.server.redaction.model.Section;
-import com.iqser.red.service.redaction.v1.server.redaction.model.SectionSearchableTextPair;
-import com.iqser.red.service.redaction.v1.server.redaction.utils.EntitySearchUtils;
-import com.iqser.red.service.redaction.v1.server.tableextraction.model.Cell;
-
-import lombok.RequiredArgsConstructor;
+import java.util.*;
+import java.util.stream.Collectors;
+import java.util.stream.Stream;
 
+@Slf4j
 @Service
 @RequiredArgsConstructor
 public class ReanalyzeService {
@@ -57,39 +34,98 @@ public class ReanalyzeService {
     private final SurroundingWordsService surroundingWordsService;
     private final EntityRedactionService entityRedactionService;
     private final RedactionLogCreatorService redactionLogCreatorService;
+    private final RedactionStorageService redactionStorageService;
+    private final PdfSegmentationService pdfSegmentationService;
+    private final RedactionChangeLogService redactionChangeLogService;
+    private final AnalyzeResponseService analyzeResponseService;
 
 
-    public ReanalyzeResult reanalyze(@RequestBody RenalyzeRequest renalyzeRequest) {
+    public AnalyzeResult analyze(AnalyzeRequest analyzeRequest) {
 
-        DictionaryIncrement dictionaryIncrement = dictionaryService.getDictionaryIncrements(renalyzeRequest.getRuleSetId(), renalyzeRequest
-                .getRedactionLog()
-                .getDictionaryVersion());
+        long startTime = System.currentTimeMillis();
 
-        Set<String> manualForceAndRemoveIds = getForceAndRemoveIds(renalyzeRequest.getManualRedactions());
+        var pageCount = 0;
+        Document classifiedDoc;
+
+        try {
+            var storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(analyzeRequest
+                    .getProjectId(), analyzeRequest.getFileId(), FileType.ORIGIN));
+            classifiedDoc = pdfSegmentationService.parseDocument(storedObjectStream);
+            pageCount = classifiedDoc.getPages().size();
+        } catch (Exception e) {
+            throw new RedactionException(e);
+        }
+        log.info("Document structure analysis successful, starting redaction analysis...");
+
+        entityRedactionService.processDocument(classifiedDoc, analyzeRequest.getRuleSetId(), analyzeRequest.getManualRedactions(), analyzeRequest
+                .getProjectId());
+        redactionLogCreatorService.createRedactionLog(classifiedDoc, pageCount, analyzeRequest.getManualRedactions(), analyzeRequest
+                .getRuleSetId());
+
+        log.info("Redaction analysis successful...");
+
+        var redactionLog = new RedactionLog(classifiedDoc.getRedactionLogEntities(), classifiedDoc.getDictionaryVersion()
+                .getRulesetVersion(), classifiedDoc.getRulesVersion(), analyzeRequest.getRuleSetId(), classifiedDoc.getDictionaryVersion()
+                .getDossierVersion());
+
+        log.info("Analyzed with rules {} and dictionary {} for ruleSet: {}", classifiedDoc.getRulesVersion(), classifiedDoc
+                .getDictionaryVersion(), analyzeRequest.getRuleSetId());
+
+        // first create changelog - this only happens when we migrate files analyzed via the old process and we don't want to loose changeLog data
+        var changeLog = redactionChangeLogService.createAndStoreChangeLog(analyzeRequest.getProjectId(), analyzeRequest.getFileId(), redactionLog);
+        // store redactionLog
+        redactionStorageService.storeObject(analyzeRequest.getProjectId(), analyzeRequest.getFileId(), FileType.REDACTION_LOG, redactionLog);
+        redactionStorageService.storeObject(analyzeRequest.getProjectId(), analyzeRequest.getFileId(), FileType.TEXT, new Text(pageCount, classifiedDoc
+                .getSectionText()));
+        redactionStorageService.storeObject(analyzeRequest.getProjectId(), analyzeRequest.getFileId(), FileType.SECTION_GRID, classifiedDoc
+                .getSectionGrid());
+
+        long duration = System.currentTimeMillis() - startTime;
+        return analyzeResponseService.createAnalyzeResponse(analyzeRequest.getProjectId(), analyzeRequest.getFileId(), duration, pageCount, redactionLog, changeLog);
+    }
+
+
+    @SneakyThrows
+    public AnalyzeResult reanalyze(@RequestBody AnalyzeRequest analyzeRequest) {
+
+        long startTime = System.currentTimeMillis();
+
+        var redactionLog = redactionStorageService.getRedactionLog(analyzeRequest.getProjectId(), analyzeRequest.getFileId());
+        var text = redactionStorageService.getText(analyzeRequest.getProjectId(), analyzeRequest.getFileId());
+
+        // not yet ready for reanalysis
+        if (redactionLog == null || text == null || text.getNumberOfPages() == 0) {
+            return analyze(analyzeRequest);
+        }
+
+        DictionaryIncrement dictionaryIncrement = dictionaryService.getDictionaryIncrements(analyzeRequest.getRuleSetId(), new DictionaryVersion(redactionLog
+                .getDictionaryVersion(), redactionLog.getDossierDictionaryVersion()), analyzeRequest.getProjectId());
+
+        Set<String> manualForceAndRemoveIds = getForceAndRemoveIds(analyzeRequest.getManualRedactions());
         Map<String, List<Comment>> comments = null;
         Set<ManualRedactionEntry> manualAdds = null;
 
-        if (renalyzeRequest.getManualRedactions() != null) {
+        if (analyzeRequest.getManualRedactions() != null) {
             // TODO comments will be removed from redactionLog, so we ignore this first.
-            comments = renalyzeRequest.getManualRedactions().getComments();
-            manualAdds = renalyzeRequest.getManualRedactions().getEntriesToAdd();
+            comments = analyzeRequest.getManualRedactions().getComments();
+            manualAdds = analyzeRequest.getManualRedactions().getEntriesToAdd();
         }
 
-        Set<Integer> sectionsToReanaylse = new HashSet<>();
+        Set<Integer> sectionsToReanalyse = new HashSet<>();
         Map<Integer, Set<Image>> imageEntries = new HashMap<>();
-        for (RedactionLogEntry entry : renalyzeRequest.getRedactionLog().getRedactionLogEntry()) {
+        for (RedactionLogEntry entry : redactionLog.getRedactionLogEntry()) {
             if (entry.isManual() || manualForceAndRemoveIds.contains(entry.getId())) {
-                sectionsToReanaylse.add(entry.getSectionNumber());
+                sectionsToReanalyse.add(entry.getSectionNumber());
             }
             if (entry.isImage() || entry.getType().equals("image")) {
                 imageEntries.computeIfAbsent(entry.getSectionNumber(), x -> new HashSet<>()).add(convert(entry));
             }
         }
 
-        for (SectionText sectionText : renalyzeRequest.getText().getSectionTexts()) {
+        for (SectionText sectionText : text.getSectionTexts()) {
 
             if (EntitySearchUtils.sectionContainsAny(sectionText.getText(), dictionaryIncrement.getValues())) {
-                sectionsToReanaylse.add(sectionText.getSectionNumber());
+                sectionsToReanalyse.add(sectionText.getSectionNumber());
             }
 
             if (manualAdds != null) {
@@ -106,187 +142,123 @@ public class ReanalyzeService {
             }
         }
 
-        if (sectionsToReanaylse.isEmpty() && (manualAdds == null || manualAdds.isEmpty())) {
-            renalyzeRequest.getRedactionLog().setDictionaryVersion(dictionaryIncrement.getDictionaryVersion());
-            return ReanalyzeResult.builder().redactionLog(renalyzeRequest.getRedactionLog()).build();
+        log.info("Should reanalyze {} sections for request: {}", sectionsToReanalyse.size(), analyzeRequest);
+
+        if (sectionsToReanalyse.isEmpty() && (manualAdds == null || manualAdds.isEmpty())) {
+            return finalizeAnalysis(analyzeRequest, startTime, redactionLog, text, dictionaryIncrement);
         }
 
-        try (PDDocument pdDocument = PDDocument.load(new ByteArrayInputStream(renalyzeRequest.getDocument()))) {
+        List<SectionText> reanalysisSections = new ArrayList<>();
 
-            List<ReanalysisSection> reanalysisSections = new ArrayList<>();
-            for (SectionText sectionText : renalyzeRequest.getText().getSectionTexts()) {
+        for (SectionText sectionText : text.getSectionTexts()) {
 
-                if (!sectionsToReanaylse.contains(sectionText.getSectionNumber())) {
-                    continue;
-                }
+            if (sectionsToReanalyse.contains(sectionText.getSectionNumber())) {
+                reanalysisSections.add(sectionText);
+            }
+        }
 
-                ReanalysisSection reanalysisSection = new ReanalysisSection();
-                reanalysisSection.setHeadline(sectionText.getHeadline());
-                reanalysisSection.setSectionNumber(sectionText.getSectionNumber());
-                List<TextBlock> textBlocks = new ArrayList<>();
+        //--
 
-                Map<Integer, List<SectionArea>> sectionAreasPerPage = new HashMap<>();
-                for (SectionArea sectionArea : sectionText.getSectionAreas()) {
-                    sectionAreasPerPage.computeIfAbsent(sectionArea.getPage(), (x) -> new ArrayList<>())
-                            .add(sectionArea);
-                }
+        KieContainer kieContainer = droolsExecutionService.updateRules(analyzeRequest.getRuleSetId());
 
-                Map<String, CellValue> tabularData = new HashMap<>();
-                List<Integer> cellStarts = new ArrayList<>();
-                for (Integer page : sectionAreasPerPage.keySet()) {
-                    List<SectionArea> areasOnPage = sectionAreasPerPage.get(page);
+        Dictionary dictionary = dictionaryService.getDeepCopyDictionary(analyzeRequest.getRuleSetId(), analyzeRequest.getProjectId());
 
-                    PDPage pdPage = pdDocument.getPage(page - 1);
-                    PDRectangle cropBox = pdPage.getCropBox();
-                    PDFAreaTextStripper textStripper = new PDFAreaTextStripper();
-                    textStripper.setPageNumber(page);
+        List<SectionSearchableTextPair> sectionSearchableTextPairs = new ArrayList<>();
+        for (SectionText reanalysisSection : reanalysisSections) {
 
-                    int cellStart = 0;
-                    for (SectionArea sectionArea : areasOnPage) {
-
-                        Rectangle2D rect = null;
-                        if (pdPage.getRotation() == 90) {
-                            rect = new Rectangle2D.Float(sectionArea.getTopLeft().getY(), sectionArea.getTopLeft()
-                                    .getX(), sectionArea.getHeight(), sectionArea.getWidth() + 0.001f);
-                        } else {
-                            rect = new Rectangle2D.Float(sectionArea.getTopLeft().getX(), -sectionArea.getTopLeft()
-                                    .getY() + cropBox.getUpperRightY() - sectionArea.getHeight(), sectionArea.getWidth(), sectionArea
-                                    .getHeight() + 0.001f);
-                        }
-
-                        textStripper.addRegion(String.valueOf(1), rect);
-                        textStripper.extractRegions(pdPage);
-                        textStripper.getTextForRegion(String.valueOf(1));
-                        List<TextPositionSequence> positions = textStripper.getTextPositionSequences();
-
-                        TextBlock textBlock = new TextBlock(sectionArea.getTopLeft().getX(), sectionArea.getTopLeft()
-                                .getX() + sectionArea.getWidth(), sectionArea.getTopLeft()
-                                .getY(), sectionArea.getTopLeft().getY() + sectionArea.getHeight(), positions, 0);
-
-                        if (sectionText.isTable()) {
-                            Cell cell = new Cell();
-                            cell.addTextBlock(textBlock);
-                            tabularData.put(sectionArea.getHeader(), new CellValue(cell.getTextBlocks(), cellStart));
-                            cellStarts.add(cellStart);
-                            cellStart = cellStart + cell.toString().trim().length() + 1;
-                        }
-
-                        textBlocks.add(textBlock);
-                        textStripper.clearPositions();
-                    }
-
-                }
-                reanalysisSection.setTextBlocks(textBlocks);
-                reanalysisSection.setTabularData(tabularData);
-
-                if (sectionText.isTable()) {
-                    reanalysisSection.setCellStarts(cellStarts);
-                }
-                if (imageEntries.containsKey(sectionText.getSectionNumber())) {
-                    reanalysisSection.getImages().addAll(imageEntries.get(sectionText.getSectionNumber()));
-                }
-
-                reanalysisSections.add(reanalysisSection);
+            Set<Entity> entities = entityRedactionService.findEntities(reanalysisSection.getSearchableText(), reanalysisSection
+                    .getHeadline(), reanalysisSection.getSectionNumber(), dictionary, false);
+            if (reanalysisSection.getCellStarts() != null) {
+                surroundingWordsService.addSurroundingText(entities, reanalysisSection.getSearchableText(), dictionary, reanalysisSection
+                        .getCellStarts());
+            } else {
+                surroundingWordsService.addSurroundingText(entities, reanalysisSection.getSearchableText(), dictionary);
             }
 
-            //--
+            sectionSearchableTextPairs.add(new SectionSearchableTextPair(Section.builder()
+                    .isLocal(false)
+                    .dictionaryTypes(dictionary.getTypes())
+                    .entities(entities)
+                    .text(reanalysisSection.getSearchableText().getAsStringWithLinebreaks())
+                    .searchText(reanalysisSection.getSearchableText().toString())
+                    .headline(reanalysisSection.getHeadline())
+                    .sectionNumber(reanalysisSection.getSectionNumber())
+                    .tabularData(reanalysisSection.getTabularData())
+                    .searchableText(reanalysisSection.getSearchableText())
+                    .dictionary(dictionary)
+                    .images(reanalysisSection.getImages())
+                    .build(), reanalysisSection.getSearchableText()));
+        }
 
-            KieContainer kieContainer = droolsExecutionService.updateRules(renalyzeRequest.getRuleSetId());
+        Set<Entity> entities = new HashSet<>();
+        Map<Integer, Set<Image>> imagesPerPage = new HashMap<>();
+        sectionSearchableTextPairs.forEach(sectionSearchableTextPair -> {
+            Section analysedRowSection = droolsExecutionService.executeRules(kieContainer, sectionSearchableTextPair.getSection());
+            entities.addAll(analysedRowSection.getEntities());
+            EntitySearchUtils.removeEntitiesContainedInLarger(entities);
 
-            Dictionary dictionary = dictionaryService.getDeepCopyDictionary(renalyzeRequest.getRuleSetId());
-
-            List<SectionSearchableTextPair> sectionSearchableTextPairs = new ArrayList<>();
-            for (ReanalysisSection reanalysisSection : reanalysisSections) {
-
-                Set<Entity> entities = entityRedactionService.findEntities(reanalysisSection.getSearchableText(), reanalysisSection
-                        .getHeadline(), reanalysisSection.getSectionNumber(), dictionary, false);
-                if (reanalysisSection.getCellStarts() != null) {
-                    surroundingWordsService.addSurroundingText(entities, reanalysisSection.getSearchableText(), dictionary, reanalysisSection
-                            .getCellStarts());
-                } else {
-                    surroundingWordsService.addSurroundingText(entities, reanalysisSection.getSearchableText(), dictionary);
-                }
-
-                sectionSearchableTextPairs.add(new SectionSearchableTextPair(Section.builder()
-                        .isLocal(false)
-                        .dictionaryTypes(dictionary.getTypes())
-                        .entities(entities)
-                        .text(reanalysisSection.getSearchableText().getAsStringWithLinebreaks())
-                        .searchText(reanalysisSection.getSearchableText().toString())
-                        .headline(reanalysisSection.getHeadline())
-                        .sectionNumber(reanalysisSection.getSectionNumber())
-                        .tabularData(reanalysisSection.getTabularData())
-                        .searchableText(reanalysisSection.getSearchableText())
-                        .dictionary(dictionary)
-                        .images(reanalysisSection.getImages())
-                        .build(), reanalysisSection.getSearchableText()));
+            for (Image image : analysedRowSection.getImages()) {
+                imagesPerPage.computeIfAbsent(image.getPage(), (a) -> new HashSet<>()).add(image);
             }
 
-            Set<Entity> entities = new HashSet<>();
-            Map<Integer, Set<Image>> imagesPerPage = new HashMap<>();
-            sectionSearchableTextPairs.forEach(sectionSearchableTextPair -> {
-                Section analysedRowSection = droolsExecutionService.executeRules(kieContainer, sectionSearchableTextPair
-                        .getSection());
-                entities.addAll(analysedRowSection.getEntities());
-                EntitySearchUtils.removeEntitiesContainedInLarger(entities);
+        });
 
-                for (Image image : analysedRowSection.getImages()) {
-                    imagesPerPage.computeIfAbsent(image.getPage(), (a) -> new HashSet<>()).add(image);
-                }
-
-            });
-
-            Map<Integer, List<Entity>> entitiesPerPage = new HashMap<>();
-            for (Entity entity : entities) {
-                Map<Integer, List<EntityPositionSequence>> sequenceOnPage = new HashMap<>();
-                for (EntityPositionSequence entityPositionSequence : entity.getPositionSequences()) {
-                    sequenceOnPage.computeIfAbsent(entityPositionSequence.getPageNumber(), (x) -> new ArrayList<>())
-                            .add(entityPositionSequence);
-                }
-
-                for (Map.Entry<Integer, List<EntityPositionSequence>> entry : sequenceOnPage.entrySet()) {
-                    entitiesPerPage.computeIfAbsent(entry.getKey(), (x) -> new ArrayList<>())
-                            .add(new Entity(entity.getWord(), entity.getType(), entity.isRedaction(), entity.getRedactionReason(), entry
-                                    .getValue(), entity.getHeadline(), entity.getMatchedRule(), entity.getSectionNumber(), entity
-                                    .getLegalBasis(), entity.isDictionaryEntry(), entity.getTextBefore(), entity.getTextAfter(), entity
-                                    .getStart(), entity.getEnd()));
-                }
+        Map<Integer, List<Entity>> entitiesPerPage = new HashMap<>();
+        for (Entity entity : entities) {
+            Map<Integer, List<EntityPositionSequence>> sequenceOnPage = new HashMap<>();
+            for (EntityPositionSequence entityPositionSequence : entity.getPositionSequences()) {
+                sequenceOnPage.computeIfAbsent(entityPositionSequence.getPageNumber(), (x) -> new ArrayList<>())
+                        .add(entityPositionSequence);
             }
 
-            List<RedactionLogEntry> newRedactionLogEntries = new ArrayList<>();
-            for (int page = 1; page <= pdDocument.getNumberOfPages(); page++) {
-                if (entitiesPerPage.get(page) != null) {
-                    newRedactionLogEntries.addAll(redactionLogCreatorService.addEntries(entitiesPerPage, renalyzeRequest
-                            .getManualRedactions(), page, renalyzeRequest.getRuleSetId()));
-                }
+            for (Map.Entry<Integer, List<EntityPositionSequence>> entry : sequenceOnPage.entrySet()) {
+                entitiesPerPage.computeIfAbsent(entry.getKey(), (x) -> new ArrayList<>())
+                        .add(new Entity(entity.getWord(), entity.getType(), entity.isRedaction(), entity.getRedactionReason(), entry
+                                .getValue(), entity.getHeadline(), entity.getMatchedRule(), entity.getSectionNumber(), entity
+                                .getLegalBasis(), entity.isDictionaryEntry(), entity.getTextBefore(), entity.getTextAfter(), entity
+                                .getStart(), entity.getEnd(), entity.isDossierDictionaryEntry()));
+            }
+        }
 
-                if (imagesPerPage.get(page) != null) {
-                    newRedactionLogEntries.addAll(redactionLogCreatorService.addImageEntries(imagesPerPage, renalyzeRequest
-                            .getManualRedactions(), page, renalyzeRequest.getRuleSetId()));
-                }
-
-                newRedactionLogEntries.addAll(redactionLogCreatorService.addManualAddEntries(manualAdds, comments, page, renalyzeRequest
+        List<RedactionLogEntry> newRedactionLogEntries = new ArrayList<>();
+        for (int page = 1; page <= text.getNumberOfPages(); page++) {
+            if (entitiesPerPage.get(page) != null) {
+                newRedactionLogEntries.addAll(redactionLogCreatorService.addEntries(entitiesPerPage, analyzeRequest.getManualRedactions(), page, analyzeRequest
                         .getRuleSetId()));
             }
 
-            Iterator<RedactionLogEntry> itty = renalyzeRequest.getRedactionLog().getRedactionLogEntry().iterator();
-            while (itty.hasNext()) {
-                RedactionLogEntry entry = itty.next();
-                if (sectionsToReanaylse.contains(entry.getSectionNumber())) {
-                    itty.remove();
-                }
+            if (imagesPerPage.get(page) != null) {
+                newRedactionLogEntries.addAll(redactionLogCreatorService.addImageEntries(imagesPerPage, analyzeRequest.getManualRedactions(), page, analyzeRequest
+                        .getRuleSetId()));
             }
 
-            renalyzeRequest.getRedactionLog().getRedactionLogEntry().addAll(newRedactionLogEntries);
-
-            renalyzeRequest.getRedactionLog().setDictionaryVersion(dictionaryIncrement.getDictionaryVersion());
-
-            return ReanalyzeResult.builder().redactionLog(renalyzeRequest.getRedactionLog()).build();
-
-        } catch (Exception e) {
-            throw new RedactionException(e);
+            newRedactionLogEntries.addAll(redactionLogCreatorService.addManualAddEntries(manualAdds, comments, page, analyzeRequest
+                    .getRuleSetId()));
         }
 
+        redactionLog.getRedactionLogEntry()
+                .removeIf(entry -> sectionsToReanalyse.contains(entry.getSectionNumber()) && !entry.isImage() || entry.getSectionNumber() == 0 && !entry
+                        .isImage());
+        redactionLog.getRedactionLogEntry().addAll(newRedactionLogEntries);
+        return finalizeAnalysis(analyzeRequest, startTime, redactionLog, text, dictionaryIncrement);
+
+    }
+
+
+    private AnalyzeResult finalizeAnalysis(@RequestBody AnalyzeRequest analyzeRequest, long startTime,
+                                           RedactionLog redactionLog, Text text,
+                                           DictionaryIncrement dictionaryIncrement) {
+
+        redactionLog.setDictionaryVersion(dictionaryIncrement.getDictionaryVersion().getRulesetVersion());
+        redactionLog.setDossierDictionaryVersion(dictionaryIncrement.getDictionaryVersion().getDossierVersion());
+
+        var changeLog = redactionChangeLogService.createAndStoreChangeLog(analyzeRequest.getProjectId(), analyzeRequest.getFileId(), redactionLog);
+        redactionStorageService.storeObject(analyzeRequest.getProjectId(), analyzeRequest.getFileId(), FileType.REDACTION_LOG, redactionLog);
+
+        long duration = System.currentTimeMillis() - startTime;
+
+        return analyzeResponseService.createAnalyzeResponse(analyzeRequest.getProjectId(), analyzeRequest.getFileId(), duration, text
+                .getNumberOfPages(), redactionLog, changeLog);
     }
 
 
@@ -309,7 +281,7 @@ public class ReanalyzeService {
 
         return Image.builder()
                 .type(entry.getType())
-                .position(new Rectangle2D.Float(position.getTopLeft().getX(), position.getTopLeft()
+                .position(new RedRectangle2D(position.getTopLeft().getX(), position.getTopLeft()
                         .getY(), position.getWidth(), position.getHeight()))
                 .sectionNumber(entry.getSectionNumber())
                 .section(entry.getSection())

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/service/RedactionChangeLogService.java

@@ -0,0 +1,93 @@
+package com.iqser.red.service.redaction.v1.server.redaction.service;
+
+import com.iqser.red.service.file.management.v1.api.model.FileType;
+import com.iqser.red.service.redaction.v1.model.ChangeType;
+import com.iqser.red.service.redaction.v1.model.RedactionChangeLog;
+import com.iqser.red.service.redaction.v1.model.RedactionChangeLogEntry;
+import com.iqser.red.service.redaction.v1.model.RedactionLog;
+import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
+import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
+import lombok.RequiredArgsConstructor;
+import lombok.extern.slf4j.Slf4j;
+import org.springframework.stereotype.Service;
+
+import java.util.ArrayList;
+import java.util.List;
+import java.util.stream.Collectors;
+
+@Slf4j
+@Service
+@RequiredArgsConstructor
+public class RedactionChangeLogService {
+
+    private final RedactionStorageService redactionStorageService;
+
+    public RedactionChangeLog createAndStoreChangeLog(String projectId, String fileId, RedactionLog currentRedactionLog) {
+
+        try {
+            RedactionLog previousRedactionLog = redactionStorageService.getRedactionLog(projectId, fileId);
+            var changeLog = createChangeLog(currentRedactionLog, previousRedactionLog);
+            redactionStorageService.storeObject(projectId, fileId, FileType.REDACTION_CHANGELOG, changeLog);
+            return changeLog;
+        } catch (Exception e) {
+            log.debug("Previous redaction log not available");
+            return null;
+        }
+
+    }
+
+
+    private RedactionChangeLog createChangeLog(RedactionLog currentRedactionLog, RedactionLog previousRedactionLog) {
+
+
+        if (previousRedactionLog == null) {
+            return null;
+        }
+
+        List<RedactionLogEntry> added = new ArrayList<>(currentRedactionLog.getRedactionLogEntry());
+        added.removeAll(previousRedactionLog.getRedactionLogEntry());
+
+        List<RedactionLogEntry> removed = new ArrayList<>(previousRedactionLog.getRedactionLogEntry());
+        removed.removeAll(currentRedactionLog.getRedactionLogEntry());
+
+        List<RedactionChangeLogEntry> changeLogEntries = added.stream()
+                .map(entry -> convert(entry, ChangeType.ADDED))
+                .collect(Collectors.toList());
+        changeLogEntries.addAll(removed.stream()
+                .map(entry -> convert(entry, ChangeType.REMOVED))
+                .collect(Collectors.toList()));
+
+        return new RedactionChangeLog(changeLogEntries, currentRedactionLog.getDictionaryVersion(), currentRedactionLog.getRulesVersion(), currentRedactionLog
+                .getRuleSetId());
+    }
+
+
+    private RedactionChangeLogEntry convert(RedactionLogEntry entry, ChangeType changeType) {
+
+        return RedactionChangeLogEntry.builder()
+                .id(entry.getId())
+                .type(entry.getType())
+                .value(entry.getValue())
+                .reason(entry.getReason())
+                .matchedRule(entry.getMatchedRule())
+                .legalBasis(entry.getLegalBasis())
+                .redacted(entry.isRedacted())
+                .isHint(entry.isHint())
+                .isRecommendation(entry.isRecommendation())
+                .section(entry.getSection())
+                .color(entry.getColor())
+                .positions(entry.getPositions())
+                .sectionNumber(entry.getSectionNumber())
+                .manual(entry.isManual())
+                .status(entry.getStatus())
+                .manualRedactionType(entry.getManualRedactionType())
+                .isDictionaryEntry(entry.isDictionaryEntry())
+                .textBefore(entry.getTextBefore())
+                .textAfter(entry.getTextAfter())
+                .comments(entry.getComments())
+                .changeType(changeType)
+                .isDossierDictionaryEntry(entry.isDossierDictionaryEntry())
+                .build();
+    }
+
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/service/RedactionLogCreatorService.java

@@ -1,31 +1,10 @@
 package com.iqser.red.service.redaction.v1.server.redaction.service;
 
-import java.util.ArrayList;
-import java.util.HashSet;
-import java.util.List;
-import java.util.Map;
-import java.util.Set;
-import java.util.stream.Collectors;
-
-import org.apache.commons.collections4.CollectionUtils;
-import org.apache.pdfbox.text.TextPosition;
-import org.springframework.stereotype.Service;
-
-import com.iqser.red.service.redaction.v1.model.CellRectangle;
-import com.iqser.red.service.redaction.v1.model.Comment;
-import com.iqser.red.service.redaction.v1.model.IdRemoval;
-import com.iqser.red.service.redaction.v1.model.ManualForceRedact;
-import com.iqser.red.service.redaction.v1.model.ManualRedactionEntry;
-import com.iqser.red.service.redaction.v1.model.ManualRedactionType;
-import com.iqser.red.service.redaction.v1.model.ManualRedactions;
-import com.iqser.red.service.redaction.v1.model.Point;
-import com.iqser.red.service.redaction.v1.model.Rectangle;
-import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
-import com.iqser.red.service.redaction.v1.model.SectionRectangle;
-import com.iqser.red.service.redaction.v1.model.Status;
+import com.iqser.red.service.redaction.v1.model.*;
 import com.iqser.red.service.redaction.v1.server.classification.model.Document;
 import com.iqser.red.service.redaction.v1.server.classification.model.Paragraph;
 import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
+import com.iqser.red.service.redaction.v1.server.parsing.model.RedTextPosition;
 import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
 import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
 import com.iqser.red.service.redaction.v1.server.redaction.model.EntityPositionSequence;
@@ -34,8 +13,16 @@ import com.iqser.red.service.redaction.v1.server.redaction.utils.IdBuilder;
 import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
 import com.iqser.red.service.redaction.v1.server.tableextraction.model.Cell;
 import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
-
 import lombok.RequiredArgsConstructor;
+import org.apache.commons.collections4.CollectionUtils;
+import org.springframework.stereotype.Service;
+
+import java.util.ArrayList;
+import java.util.HashSet;
+import java.util.List;
+import java.util.Map;
+import java.util.Set;
+import java.util.stream.Collectors;
 
 @Service
 @RequiredArgsConstructor
@@ -285,24 +272,24 @@ public class RedactionLogCreatorService {
     }
 
 
-    private List<Rectangle> getRectanglesPerLine(List<TextPosition> textPositions, int page) {
+    private List<Rectangle> getRectanglesPerLine(List<RedTextPosition> textPositions, int page) {
 
         List<Rectangle> rectangles = new ArrayList<>();
         if (textPositions.size() == 1) {
-            rectangles.add(new TextPositionSequence(textPositions, page).getRectangle());
+            rectangles.add( TextPositionSequence.fromData(textPositions, page).getRectangle());
         } else {
             float y = textPositions.get(0).getYDirAdj();
             int startIndex = 0;
             for (int i = 1; i < textPositions.size(); i++) {
                 float yDirAdj = textPositions.get(i).getYDirAdj();
                 if (yDirAdj != y) {
-                    rectangles.add(new TextPositionSequence(textPositions.subList(startIndex, i), page).getRectangle());
+                    rectangles.add( TextPositionSequence.fromData(textPositions.subList(startIndex, i), page).getRectangle());
                     y = yDirAdj;
                     startIndex = i;
                 }
             }
             if (startIndex != textPositions.size()) {
-                rectangles.add(new TextPositionSequence(textPositions.subList(startIndex, textPositions.size()), page).getRectangle());
+                rectangles.add( TextPositionSequence.fromData(textPositions.subList(startIndex, textPositions.size()), page).getRectangle());
             }
         }
 
@@ -368,6 +355,7 @@ public class RedactionLogCreatorService {
                 .status(manualRedactionEntry.getStatus())
                 .manualRedactionType(ManualRedactionType.ADD)
                 .isDictionaryEntry(false)
+                .isDossierDictionaryEntry(manualRedactionEntry.isAddToDossierDictionary())
                 .build();
     }
 
@@ -391,6 +379,7 @@ public class RedactionLogCreatorService {
                 .textBefore(entity.getTextBefore())
                 .startOffset(entity.getStart())
                 .endOffset(entity.getEnd())
+                .isDossierDictionaryEntry(entity.isDossierDictionaryEntry())
                 .build();
     }
 

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/utils/EntitySearchUtils.java

@@ -1,25 +1,17 @@
 package com.iqser.red.service.redaction.v1.server.redaction.utils;
 
-import java.util.ArrayList;
-import java.util.Comparator;
-import java.util.HashMap;
-import java.util.HashSet;
-import java.util.List;
-import java.util.Locale;
-import java.util.Map;
-import java.util.Set;
-import java.util.regex.Pattern;
-import java.util.stream.Collectors;
-
 import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
 import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryIncrementValue;
 import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
 import com.iqser.red.service.redaction.v1.server.redaction.model.EntityPositionSequence;
 import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
-
 import lombok.experimental.UtilityClass;
 import lombok.extern.slf4j.Slf4j;
 
+import java.util.*;
+import java.util.regex.Pattern;
+import java.util.stream.Collectors;
+
 @Slf4j
 @UtilityClass
 @SuppressWarnings("PMD")
@@ -46,7 +38,7 @@ public class EntitySearchUtils {
 
                 if (startIndex > -1 && (startIndex == 0 || Character.isWhitespace(inputString.charAt(startIndex - 1)) || isSeparator(inputString
                         .charAt(startIndex - 1))) && (stopIndex == inputString.length() || isSeparator(inputString.charAt(stopIndex)))) {
-                    if(value.isCaseinsensitive() || !value.isCaseinsensitive() && sectionText.substring(startIndex, stopIndex).equals(value.getValue())){
+                    if (value.isCaseinsensitive() || !value.isCaseinsensitive() && sectionText.substring(startIndex, stopIndex).equals(value.getValue())) {
                         return true;
                     }
                 }
@@ -57,7 +49,7 @@ public class EntitySearchUtils {
 
 
     public Set<Entity> find(String inputString, Set<String> values, String type, String headline, int sectionNumber,
-                            boolean local) {
+                            boolean local, boolean isDossierDictionary) {
 
         Set<Entity> found = new HashSet<>();
 
@@ -77,7 +69,7 @@ public class EntitySearchUtils {
 
                 if (startIndex > -1 && (startIndex == 0 || Character.isWhitespace(inputString.charAt(startIndex - 1)) || isSeparator(inputString
                         .charAt(startIndex - 1))) && (stopIndex == inputString.length() || isSeparator(inputString.charAt(stopIndex)))) {
-                    found.add(new Entity(inputString.substring(startIndex, stopIndex), type, startIndex, stopIndex, headline, sectionNumber, !local));
+                    found.add(new Entity(inputString.substring(startIndex, stopIndex), type, startIndex, stopIndex, headline, sectionNumber, !local, isDossierDictionary));
                 }
             } while (startIndex > -1);
         }
@@ -147,16 +139,16 @@ public class EntitySearchUtils {
 
     public void addEntitiesWithHigherRank(Set<Entity> entities, Entity found, Dictionary dictionary) {
 
-        if(entities.contains(found)){
+        if (entities.contains(found)) {
             Entity existing = entities.stream().filter(entity -> entity.equals(found)).findFirst().get();
-            if (dictionary.getDictionaryRank(existing.getType()) <= dictionary.getDictionaryRank(found.getType())){
+            if (dictionary.getDictionaryRank(existing.getType()) <= dictionary.getDictionaryRank(found.getType())) {
                 entities.remove(found);
             }
         }
         entities.add(found);
     }
 
-    public void addEntitiesIgnoreRank(Set<Entity> entities, Set<Entity> found){
+    public void addEntitiesIgnoreRank(Set<Entity> entities, Set<Entity> found) {
         // HashSet keeps old value but we want the new.
         entities.removeAll(found);
         entities.addAll(found);

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/utils/IdBuilder.java

@@ -1,15 +1,14 @@
 package com.iqser.red.service.redaction.v1.server.redaction.utils;
 
-import java.awt.geom.Rectangle2D;
-import java.nio.charset.StandardCharsets;
-import java.util.List;
-
 import com.google.common.hash.HashFunction;
 import com.google.common.hash.Hashing;
 import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
-
+import com.iqser.red.service.redaction.v1.server.redaction.model.RedRectangle2D;
 import lombok.experimental.UtilityClass;
 
+import java.nio.charset.StandardCharsets;
+import java.util.List;
+
 @UtilityClass
 public class IdBuilder {
 
@@ -26,14 +25,9 @@ public class IdBuilder {
     }
 
 
-    public String buildId(Rectangle2D rectangle2D, int page){
-
-        StringBuilder sb = new StringBuilder();
-        sb.append("x").append(rectangle2D.getX()).append("y").append(rectangle2D.getY()).append("h").append(rectangle2D.getHeight()).append("w").append(rectangle2D.getWidth()).append("p").append(page);
-
-        return hashFunction.hashString(sb.toString(), StandardCharsets.UTF_8).toString();
+    public String buildId(RedRectangle2D rectangle2D, int page) {
+        return hashFunction.hashString("x" + rectangle2D.getX() + "y" + rectangle2D.getY() + "h" + rectangle2D.getHeight() + "w" + rectangle2D.getWidth() + "p" + page, StandardCharsets.UTF_8).toString();
     }
 
 
-
 }

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/utils/ResourceLoader.java

@@ -1,5 +1,7 @@
 package com.iqser.red.service.redaction.v1.server.redaction.utils;
 
+import lombok.experimental.UtilityClass;
+
 import java.io.BufferedReader;
 import java.io.IOException;
 import java.io.InputStreamReader;
@@ -8,8 +10,6 @@ import java.nio.charset.StandardCharsets;
 import java.util.Set;
 import java.util.stream.Collectors;
 
-import lombok.experimental.UtilityClass;
-
 @UtilityClass
 public class ResourceLoader {
 
@@ -27,4 +27,4 @@ public class ResourceLoader {
 
     }
 
-}
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/utils/TextNormalizationUtilities.java

@@ -7,6 +7,7 @@ public class TextNormalizationUtilities {
 
     /**
      * Revert hyphenation due to line breaks.
+     *
      * @param text Text to be processed.
      * @return Text without line-break hyphenation.
      */
@@ -14,4 +15,4 @@ public class TextNormalizationUtilities {
         return text.replaceAll("([^\\s\\d\\-]{2,})[\\-\\u00AD]\\R|\n\r(.+ )", "$1$2");
     }
 
-}
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/segmentation/PdfSegmentationService.java

@@ -1,88 +1,275 @@
 package com.iqser.red.service.redaction.v1.server.segmentation;
 
-import java.io.IOException;
-import java.util.ArrayList;
-import java.util.List;
-
-import org.apache.pdfbox.pdmodel.PDDocument;
-import org.apache.pdfbox.pdmodel.PDPage;
-import org.apache.pdfbox.pdmodel.common.PDRectangle;
-import org.springframework.stereotype.Service;
-
 import com.iqser.red.service.redaction.v1.server.classification.model.Document;
 import com.iqser.red.service.redaction.v1.server.classification.model.Page;
 import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
 import com.iqser.red.service.redaction.v1.server.classification.service.BlockificationService;
 import com.iqser.red.service.redaction.v1.server.classification.service.ClassificationService;
+import com.iqser.red.service.redaction.v1.server.memory.MemoryStats;
 import com.iqser.red.service.redaction.v1.server.parsing.PDFLinesTextStripper;
 import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
+import com.iqser.red.service.redaction.v1.server.redaction.model.PdfImage;
+import com.iqser.red.service.redaction.v1.server.redaction.service.ImageClassificationService;
 import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
 import com.iqser.red.service.redaction.v1.server.tableextraction.model.CleanRulings;
 import com.iqser.red.service.redaction.v1.server.tableextraction.service.RulingCleaningService;
 import com.iqser.red.service.redaction.v1.server.tableextraction.service.TableExtractionService;
-
 import lombok.RequiredArgsConstructor;
 import lombok.extern.slf4j.Slf4j;
+import org.apache.commons.io.IOUtils;
+import org.apache.pdfbox.io.MemoryUsageSetting;
+import org.apache.pdfbox.pdmodel.PDDocument;
+import org.apache.pdfbox.pdmodel.PDPage;
+import org.apache.pdfbox.pdmodel.common.PDRectangle;
+import org.springframework.stereotype.Service;
+
+import java.awt.Graphics;
+import java.awt.geom.Rectangle2D;
+import java.awt.image.BufferedImage;
+import java.io.File;
+import java.io.FileOutputStream;
+import java.io.IOException;
+import java.io.InputStream;
+import java.util.ArrayList;
+import java.util.List;
 
 @Slf4j
 @Service
 @RequiredArgsConstructor
 public class PdfSegmentationService {
 
+    private final static int MAX_PAGES_BEFORE_GC = 250;
+
     private final RulingCleaningService rulingCleaningService;
     private final TableExtractionService tableExtractionService;
     private final BlockificationService blockificationService;
     private final ClassificationService classificationService;
     private final SectionsBuilderService sectionsBuilderService;
+    private final ImageClassificationService imageClassificationService;
 
 
-    public Document parseDocument(PDDocument pdDocument) throws IOException {
+    public Document parseDocument(InputStream documentInputStream) throws IOException {
+        return parseDocument(documentInputStream, false);
+    }
 
-        Document document = new Document();
+    public Document parseDocument(InputStream documentInputStream, boolean ignoreImages) throws IOException {
+        PDDocument pdDocument = null;
+        try {
+            //create tempFile
+            File tempFile = File.createTempFile("document", ".pdf");
+            IOUtils.copy(documentInputStream, new FileOutputStream(tempFile));
 
-        List<Page> pages = new ArrayList<>();
-        PDFLinesTextStripper stripper = new PDFLinesTextStripper();
-        for (int pageNumber = 1; pageNumber <= pdDocument.getNumberOfPages(); pageNumber++) {
-            PDPage pdPage = pdDocument.getPage(pageNumber - 1);
-            stripper.setPageNumber(pageNumber);
-            stripper.setStartPage(pageNumber);
-            stripper.setEndPage(pageNumber);
-            stripper.setPdpage(pdPage);
-            stripper.getText(pdDocument);
+            // initialize required variables
+            Document document = new Document();
+            List<Page> pages = new ArrayList<>();
 
-            PDRectangle pdr = pdPage.getMediaBox();
-            boolean isLandscape = pdr.getWidth() > pdr.getHeight();
 
-            int rotation = pdPage.getRotation();
-            boolean isRotated = rotation != 0 && rotation != 360;
+            pdDocument = reinitializePDDocument(tempFile, null);
+            long pageCount = pdDocument.getNumberOfPages();
 
-            CleanRulings cleanRulings = rulingCleaningService.getCleanRulings(stripper.getRulings(), stripper.getMinCharWidth(), stripper
-                    .getMaxCharHeight());
+            for (int pageNumber = 1; pageNumber <= pageCount; pageNumber++) {
 
-            Page page = blockificationService.blockify(stripper.getTextPositionSequences(), cleanRulings.getHorizontal(), cleanRulings
-                    .getVertical());
-            page.setRotation(rotation);
+                if (pageNumber % MAX_PAGES_BEFORE_GC == 0) {
+                    pdDocument = reinitializePDDocument(tempFile, pdDocument);
+                }
 
-            tableExtractionService.extractTables(cleanRulings, page);
+                PDFLinesTextStripper stripper = new PDFLinesTextStripper();
+                PDPage pdPage = pdDocument.getPage(pageNumber - 1);
+                stripper.setPageNumber(pageNumber);
+                stripper.setStartPage(pageNumber);
+                stripper.setEndPage(pageNumber);
+                stripper.setPdpage(pdPage);
+                stripper.getText(pdDocument);
 
-            buildPageStatistics(page);
+                PDRectangle pdr = pdPage.getMediaBox();
+                boolean isLandscape = pdr.getWidth() > pdr.getHeight();
 
-            page.setLandscape(isLandscape || isRotated);
+                int rotation = pdPage.getRotation();
+                boolean isRotated = rotation != 0 && rotation != 360;
 
-            page.setPageNumber(pageNumber);
-            increaseDocumentStatistics(page, document);
+                CleanRulings cleanRulings = rulingCleaningService.getCleanRulings(stripper.getRulings(), stripper.getMinCharWidth(), stripper
+                        .getMaxCharHeight());
 
-            page.setImages(stripper.getImages());
-            pages.add(page);
+                Page page = blockificationService.blockify(stripper.getTextPositionSequences(), cleanRulings.getHorizontal(), cleanRulings
+                        .getVertical());
+
+                page.setRotation(rotation);
+                page.setLandscape(isLandscape || isRotated);
+                page.setPageNumber(pageNumber);
+                List<PdfImage> mergedList = processImages(stripper.getImages());
+                page.setImages(mergedList);
+
+                tableExtractionService.extractTables(cleanRulings, page);
+                buildPageStatistics(page);
+                increaseDocumentStatistics(page, document);
+
+
+                if (!ignoreImages) {
+                    imageClassificationService.classifyImages(page);
+                }
+
+                pages.add(page);
+
+
+            }
+
+            document.setPages(pages);
+
+            classificationService.classifyDocument(document);
+            sectionsBuilderService.buildSections(document);
+            sectionsBuilderService.addImagesToSections(document);
+
+            pdDocument = reinitializePDDocument(tempFile, pdDocument);
+
+            IOUtils.close(pdDocument);
+
+            tempFile.delete();
+
+            return document;
+        } finally {
+            if (pdDocument != null) {
+                pdDocument.close();
+            }
+        }
+    }
+
+    private PDDocument reinitializePDDocument(File tempFile, PDDocument pdDocument) throws IOException {
+        if (pdDocument != null) {
+            pdDocument.close();
+        }
+        System.runFinalization();
+        System.gc();
+
+        MemoryStats.printMemoryStats();
+
+        var newPDDocument = PDDocument.load(tempFile, MemoryUsageSetting.setupTempFileOnly());
+        newPDDocument.setAllSecurityToBeRemoved(true);
+
+        return newPDDocument;
+    }
+
+    //merge images, if they are separated during pdf import, return new list of Pdfimages
+    private List<PdfImage> processImages(List<PdfImage> imageList) {
+        if (imageList.size() > 1) {
+            List<PdfImage> mergedList = new ArrayList<>();
+            int countElementsInList = 0;
+            boolean beginImage = true;
+
+            // a List of Boolean, true = candidate for merging, false = no merging
+            List<Boolean> candidatesList = getCandidatesList(imageList);
+
+            // loop through list, if there are candidates for merging (true), merge images and add it to mergedList
+            for (int i = 0; i < candidatesList.size(); i++) {
+                if (candidatesList.get(i)) {
+                    if (beginImage) {
+                        //begin of image, merge two parts of imageList
+                        PdfImage mergedImage = mergeTwoImages(imageList.get(i), imageList.get(i + 1));
+                        // image merge successful
+                        if (mergedImage != null) {
+                            mergedList.add(mergedImage);
+                            countElementsInList++;
+                        }
+                    } else {
+                        //middle of an image, merge current piece auf mergedList with image of imageList
+                        PdfImage mergedImage = mergeTwoImages(mergedList.get(countElementsInList - 1), imageList.get(i + 1));
+                        // image merge successful
+                        if (mergedImage != null) {
+                            mergedList.set(countElementsInList - 1, mergedImage);
+                        }
+                    }
+                    beginImage = false;
+                } else {
+                    // if the last candidate is false, then both images i and i+1 must be added
+                    if (i == candidatesList.size() - 1) {
+                        if (countElementsInList > 0 && mergedList.get(countElementsInList - 1) == imageList.get(i)) {
+                            mergedList.add(imageList.get(i + 1));
+                        } else {
+                            mergedList.add(imageList.get(i));
+                            mergedList.add(imageList.get(i + 1));
+                        }
+                    } else {
+                        //first image is not splitted, add i to resultlist
+                        if (beginImage) {
+                            mergedList.add(imageList.get(i));
+                            countElementsInList++;
+                        } else {
+                            // i is the end of an image, add begin of new image
+                            mergedList.add(imageList.get(i + 1));
+                            countElementsInList++;
+                            beginImage = false;
+                        }
+                    }
+                }
+            }
+            return mergedList;
+        } else {
+            return imageList;
+        }
+    }
+
+    private PdfImage mergeTwoImages(PdfImage image1, PdfImage image2) {
+
+        // diese Angaben von getPosition scheinen nicht richtig zu sein, damit werden teile des Bildes abgeschnitten
+        double width = image1.getPosition().getWidth();
+        double height1 = image1.getPosition().getHeight();
+        double height2 = image2.getPosition().getHeight();
+        // mit  den Werten, die unter Image gespeichert sind, funktioniert es
+        double img1height = image1.getImage().getHeight();
+        double img1width = image1.getImage().getWidth();
+        double img2height = image2.getImage().getHeight();
+
+        BufferedImage mergedImage = new BufferedImage((int) img1width, (int) (img1height + img2height), BufferedImage.TYPE_INT_RGB);
+        Graphics mergedImageGraphics = mergedImage.getGraphics();
+        try {
+            mergedImageGraphics.drawImage(image1.getImage(), 0, 0, null);
+            mergedImageGraphics.drawImage(image2.getImage(), 0, (int) (img1height), null);
+
+            // set Image, Position and type for merged Image
+            //set position for merged image with values of image1 and the height of both
+            Rectangle2D pos = new Rectangle2D.Float();
+            pos.setRect(image1.getPosition().getX(), image2.getPosition().getY(), width, height1 + height2);
+            PdfImage newPdfImage = new PdfImage(mergedImage, pos, image1.getPage());
+            // Graphics need to be disposed
+
+            image1.getImage().flush();
+            image2.getImage().flush();
+
+            mergedImage.flush();
+            mergedImageGraphics.dispose();
+
+            return newPdfImage;
+        } catch (Exception e) {
+            // failed to merge image
+            log.error("Failed to merge image", e);
+            return null;
         }
 
-        document.setPages(pages);
 
-        classificationService.classifyDocument(document);
-        sectionsBuilderService.buildSections(document);
-        sectionsBuilderService.addImagesToSections(document);
+    }
 
-        return document;
+    //make a list of true and false, if the image is a candidate for merging
+    private List<Boolean> getCandidatesList(List<PdfImage> imageList) {
+        List<Boolean> candidatesList = new ArrayList<>();
+        for (int i = 0; i < imageList.size(); i++) {
+            if (i >= 1) {
+                candidatesList.add(isCandidateForMerging(imageList.get(i - 1), imageList.get(i)));
+            }
+        }
+        return candidatesList;
+    }
+
+    // evaluate if two images are candidates for merging, depending on their coordinates, width and height
+    private boolean isCandidateForMerging(PdfImage image1, PdfImage image2) {
+        double x1 = image1.getPosition().getX();
+        double y1 = image1.getPosition().getY();
+        double width1 = image1.getPosition().getWidth();
+        double x2 = image2.getPosition().getX();
+        double y2 = image2.getPosition().getY();
+        double width2 = image2.getPosition().getWidth();
+        double height2 = image2.getPosition().getHeight();
+        //if the x-coordinates and widths of images are equal and the height is equal to difference between y-coordinates,
+        // then it is the same picture and has to be merged -> return true
+        return x1 == x2 && width1 == width2 && Math.ceil(height2) == Math.ceil(y1 - y2) && width2 > (height2 / 6);
     }
 
 
@@ -116,4 +303,5 @@ public class PdfSegmentationService {
 
     }
 
-}
+
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/segmentation/SectionsBuilderService.java

@@ -1,29 +1,15 @@
 package com.iqser.red.service.redaction.v1.server.segmentation;
 
-import java.util.ArrayList;
-import java.util.Collections;
-import java.util.HashMap;
-import java.util.Iterator;
-import java.util.List;
-import java.util.Map;
-import java.util.SortedSet;
-import java.util.TreeSet;
-import java.util.stream.Collectors;
-
-import org.apache.commons.collections4.CollectionUtils;
-import org.springframework.stereotype.Service;
-
-import com.iqser.red.service.redaction.v1.server.classification.model.Document;
-import com.iqser.red.service.redaction.v1.server.classification.model.Footer;
-import com.iqser.red.service.redaction.v1.server.classification.model.Header;
-import com.iqser.red.service.redaction.v1.server.classification.model.Page;
-import com.iqser.red.service.redaction.v1.server.classification.model.Paragraph;
-import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
-import com.iqser.red.service.redaction.v1.server.classification.model.UnclassifiedText;
+import com.iqser.red.service.redaction.v1.server.classification.model.*;
 import com.iqser.red.service.redaction.v1.server.redaction.model.PdfImage;
 import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
 import com.iqser.red.service.redaction.v1.server.tableextraction.model.Cell;
 import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
+import org.apache.commons.collections4.CollectionUtils;
+import org.springframework.stereotype.Service;
+
+import java.util.*;
+import java.util.stream.Collectors;
 
 @Service
 public class SectionsBuilderService {
@@ -121,6 +107,20 @@ public class SectionsBuilderService {
             }
         }
 
+        if (paragraphMap.isEmpty()) {
+            Paragraph paragraph = new Paragraph();
+            document.getParagraphs().add(paragraph);
+            paragraphMap.computeIfAbsent(1, x -> new TreeSet<>()).add(paragraph);
+        }
+
+        // first page is always a paragraph, else we can't process pages 1..N,
+        // where N is the first found page with a paragraph
+        if (paragraphMap.get(1) == null) {
+            Paragraph paragraph = new Paragraph();
+            document.getParagraphs().add(paragraph);
+            paragraphMap.computeIfAbsent(1, x -> new TreeSet<>()).add(paragraph);
+        }
+
         for (Page page : document.getPages()) {
             for (PdfImage image : page.getImages()) {
                 SortedSet<Paragraph> paragraphsOnPage = paragraphMap.get(page.getPageNumber());
@@ -296,4 +296,4 @@ public class SectionsBuilderService {
 
     }
 
-}
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/settings/RedactionServiceSettings.java

@@ -1,17 +1,16 @@
 package com.iqser.red.service.redaction.v1.server.settings;
 
-import org.springframework.boot.context.properties.ConfigurationProperties;
-
 import lombok.Data;
+import org.springframework.boot.context.properties.ConfigurationProperties;
 
 @Data
 @ConfigurationProperties("redaction-service")
 public class RedactionServiceSettings {
-    
+
     private int numberOfSurroundingWords = 3;
 
     private int surroundingWordsOffsetWindow = 100;
 
     private boolean enableImageClassification = true;
 
-}
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/storage/RedactionStorageService.java

@@ -0,0 +1,103 @@
+package com.iqser.red.service.redaction.v1.server.storage;
+
+import com.fasterxml.jackson.databind.ObjectMapper;
+import com.iqser.red.service.file.management.v1.api.model.FileType;
+import com.iqser.red.service.redaction.v1.model.RedactionLog;
+import com.iqser.red.service.redaction.v1.model.SectionGrid;
+import com.iqser.red.service.redaction.v1.server.classification.model.Text;
+import com.iqser.red.storage.commons.exception.StorageObjectDoesNotExist;
+import com.iqser.red.storage.commons.service.StorageService;
+import lombok.Getter;
+import lombok.RequiredArgsConstructor;
+import lombok.SneakyThrows;
+import lombok.extern.slf4j.Slf4j;
+import org.springframework.core.io.InputStreamResource;
+import org.springframework.stereotype.Service;
+
+import java.io.IOException;
+import java.io.InputStream;
+
+@Slf4j
+@Service
+@RequiredArgsConstructor
+public class RedactionStorageService {
+
+    private final ObjectMapper objectMapper;
+    private final StorageService storageService;
+
+    @SneakyThrows
+    public InputStream getStoredObject(String storageId) {
+        return storageService.getObject(storageId).getInputStream();
+    }
+
+
+    @SneakyThrows
+    public void storeObject(String projectId, String fileId, FileType fileType, Object any) {
+        storageService.storeObject(StorageIdUtils.getStorageId(projectId, fileId, fileType), objectMapper.writeValueAsBytes(any));
+    }
+
+
+    public RedactionLog getRedactionLog(String projectId, String fileId) {
+
+        InputStreamResource inputStreamResource;
+        try {
+            inputStreamResource = storageService.getObject(StorageIdUtils.getStorageId(projectId, fileId, FileType.REDACTION_LOG));
+        } catch (StorageObjectDoesNotExist e) {
+            log.debug("Text not available.");
+            return null;
+        }
+
+        try {
+            return objectMapper.readValue(inputStreamResource.getInputStream(), RedactionLog.class);
+        } catch (IOException e) {
+            throw new RuntimeException("Could not convert RedactionLog", e);
+        }
+    }
+
+
+    public Text getText(String projectId, String fileId) {
+
+        InputStreamResource inputStreamResource;
+        try {
+            inputStreamResource = storageService.getObject(StorageIdUtils.getStorageId(projectId, fileId, FileType.TEXT));
+        } catch (StorageObjectDoesNotExist e) {
+            log.debug("Text not available.");
+            return null;
+        }
+
+        try {
+            return objectMapper.readValue(inputStreamResource.getInputStream(), Text.class);
+        } catch (IOException e) {
+            throw new RuntimeException("Could not convert Text", e);
+        }
+    }
+
+
+    public SectionGrid getSectionGrid(String projectId, String fileId) {
+
+        var sectionGrid = storageService.getObject(StorageIdUtils.getStorageId(projectId, fileId, FileType.SECTION_GRID));
+        try {
+            return objectMapper.readValue(sectionGrid.getInputStream(), SectionGrid.class);
+        } catch (IOException e) {
+            throw new RuntimeException("Could not convert RedactionLog", e);
+        }
+    }
+
+
+    @RequiredArgsConstructor
+    public enum StorageType {
+        PARSED_DOCUMENT(".json");
+
+        @Getter
+        private final String extension;
+
+    }
+
+    public static class StorageIdUtils {
+
+        public static String getStorageId(String projectId, String fileId, FileType fileType) {
+            return projectId + "/" + fileId + "." + fileType.name() + fileType.getExtension();
+        }
+
+    }
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/tableextraction/model/AbstractTextContainer.java

@@ -1,7 +1,7 @@
 package com.iqser.red.service.redaction.v1.server.tableextraction.model;
 
+import com.fasterxml.jackson.annotation.JsonIgnore;
 import com.iqser.red.service.redaction.v1.model.Rectangle;
-
 import lombok.AllArgsConstructor;
 import lombok.Data;
 import lombok.NoArgsConstructor;
@@ -25,15 +25,17 @@ public abstract class AbstractTextContainer {
     }
 
     public boolean contains(Rectangle other) {
-        return page == other.getPage() && this.minX <= other.getTopLeft().getX() && this.maxX >= other.getTopLeft().getX() + other.getWidth() && this.minY <= other.getTopLeft().getY()  && this.maxY >= other.getTopLeft().getY() + other.getHeight();
+        return page == other.getPage() && this.minX <= other.getTopLeft().getX() && this.maxX >= other.getTopLeft().getX() + other.getWidth() && this.minY <= other.getTopLeft().getY() && this.maxY >= other.getTopLeft().getY() + other.getHeight();
     }
 
+    @JsonIgnore
     public float getHeight() {
         return maxY - minY;
     }
-
+    
+    @JsonIgnore
     public float getWidth() {
         return maxX - minX;
     }
 
-}
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/tableextraction/model/Cell.java

@@ -1,18 +1,17 @@
 package com.iqser.red.service.redaction.v1.server.tableextraction.model;
 
+import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
+import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
+import com.iqser.red.service.redaction.v1.server.redaction.utils.TextNormalizationUtilities;
+import lombok.Data;
+import lombok.EqualsAndHashCode;
+import lombok.NoArgsConstructor;
+
 import java.awt.geom.Point2D;
 import java.util.ArrayList;
 import java.util.Iterator;
 import java.util.List;
 
-import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
-import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
-import com.iqser.red.service.redaction.v1.server.redaction.utils.TextNormalizationUtilities;
-
-import lombok.Data;
-import lombok.EqualsAndHashCode;
-import lombok.NoArgsConstructor;
-
 @SuppressWarnings("serial")
 @Data
 @EqualsAndHashCode(callSuper = true)
@@ -71,7 +70,4 @@ public class Cell extends Rectangle {
     }
 
 
-
-
-
-}
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/tableextraction/model/CleanRulings.java

@@ -1,10 +1,10 @@
 package com.iqser.red.service.redaction.v1.server.tableextraction.model;
 
-import java.util.List;
-
 import lombok.Builder;
 import lombok.Data;
 
+import java.util.List;
+
 @Data
 @Builder
 public class CleanRulings {

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/tableextraction/model/Rectangle.java

@@ -8,170 +8,171 @@ import java.util.List;
 @SuppressWarnings("all")
 public class Rectangle extends Rectangle2D.Float {
 
-	/**
-	 * Ill-defined comparator, from when Rectangle was Comparable.
-	 * 
-	 * see https://github.com/tabulapdf/tabula-java/issues/116
-	 * @deprecated with no replacement
-	 */
-	@Deprecated
-	public static final Comparator<Rectangle> ILL_DEFINED_ORDER = new Comparator<Rectangle>() {
-		@Override public int compare(Rectangle o1, Rectangle o2) {
-			if (o1.equals(o2)) return 0;
-			if (o1.verticalOverlap(o2) > VERTICAL_COMPARISON_THRESHOLD) {
-				return o1.isLtrDominant() == -1 && o2.isLtrDominant() == -1
-				     ? - java.lang.Double.compare(o1.getX(), o2.getX())
-				     : java.lang.Double.compare(o1.getX(), o2.getX());
-			} else {
-				return java.lang.Float.compare(o1.getBottom(), o2.getBottom());
-			}
-		}
-	};
-	
-	protected static final float VERTICAL_COMPARISON_THRESHOLD = 0.4f;
+    protected static final float VERTICAL_COMPARISON_THRESHOLD = 0.4f;
+    /**
+     * Ill-defined comparator, from when Rectangle was Comparable.
+     * <p>
+     * see https://github.com/tabulapdf/tabula-java/issues/116
+     *
+     * @deprecated with no replacement
+     */
+    @Deprecated
+    public static final Comparator<Rectangle> ILL_DEFINED_ORDER = new Comparator<Rectangle>() {
+        @Override
+        public int compare(Rectangle o1, Rectangle o2) {
+            if (o1.equals(o2)) return 0;
+            if (o1.verticalOverlap(o2) > VERTICAL_COMPARISON_THRESHOLD) {
+                return o1.isLtrDominant() == -1 && o2.isLtrDominant() == -1
+                        ? -java.lang.Double.compare(o1.getX(), o2.getX())
+                        : java.lang.Double.compare(o1.getX(), o2.getX());
+            } else {
+                return java.lang.Float.compare(o1.getBottom(), o2.getBottom());
+            }
+        }
+    };
 
-	public Rectangle() {
-		super();
-	}
+    public Rectangle() {
+        super();
+    }
 
-	public Rectangle(float top, float left, float width, float height) {
-		super();
-		this.setRect(left, top, width, height);
-	}
+    public Rectangle(float top, float left, float width, float height) {
+        super();
+        this.setRect(left, top, width, height);
+    }
 
-	public int compareTo(Rectangle other) {
-		return ILL_DEFINED_ORDER.compare(this, other);
-	}
+    /**
+     * @param rectangles
+     * @return minimum bounding box that contains all the rectangles
+     */
+    public static Rectangle boundingBoxOf(List<? extends Rectangle> rectangles) {
+        float minx = java.lang.Float.MAX_VALUE;
+        float miny = java.lang.Float.MAX_VALUE;
+        float maxx = java.lang.Float.MIN_VALUE;
+        float maxy = java.lang.Float.MIN_VALUE;
 
-	// I'm bad at Java and need this for fancy sorting in
-	// technology.tabula.TextChunk.
-	public int isLtrDominant() {
-		return 0;
-	}
+        for (Rectangle r : rectangles) {
+            minx = (float) Math.min(r.getMinX(), minx);
+            miny = (float) Math.min(r.getMinY(), miny);
+            maxx = (float) Math.max(r.getMaxX(), maxx);
+            maxy = (float) Math.max(r.getMaxY(), maxy);
+        }
+        return new Rectangle(miny, minx, maxx - minx, maxy - miny);
+    }
 
-	public float getArea() {
-		return this.width * this.height;
-	}
+    public int compareTo(Rectangle other) {
+        return ILL_DEFINED_ORDER.compare(this, other);
+    }
 
-	public float verticalOverlap(Rectangle other) {
-		return Math.max(0, Math.min(this.getBottom(), other.getBottom()) - Math.max(this.getTop(), other.getTop()));
-	}
+    // I'm bad at Java and need this for fancy sorting in
+    // technology.tabula.TextChunk.
+    public int isLtrDominant() {
+        return 0;
+    }
 
-	public boolean verticallyOverlaps(Rectangle other) {
-		return verticalOverlap(other) > 0;
-	}
+    public float getArea() {
+        return this.width * this.height;
+    }
 
-	public float horizontalOverlap(Rectangle other) {
-		return Math.max(0, Math.min(this.getRight(), other.getRight()) - Math.max(this.getLeft(), other.getLeft()));
-	}
+    public float verticalOverlap(Rectangle other) {
+        return Math.max(0, Math.min(this.getBottom(), other.getBottom()) - Math.max(this.getTop(), other.getTop()));
+    }
 
-	public boolean horizontallyOverlaps(Rectangle other) {
-		return horizontalOverlap(other) > 0;
-	}
+    public boolean verticallyOverlaps(Rectangle other) {
+        return verticalOverlap(other) > 0;
+    }
 
-	public float verticalOverlapRatio(Rectangle other) {
-		float rv = 0, delta = Math.min(this.getBottom() - this.getTop(), other.getBottom() - other.getTop());
+    public float horizontalOverlap(Rectangle other) {
+        return Math.max(0, Math.min(this.getRight(), other.getRight()) - Math.max(this.getLeft(), other.getLeft()));
+    }
 
-		if (other.getTop() <= this.getTop() && this.getTop() <= other.getBottom()
-				&& other.getBottom() <= this.getBottom()) {
-			rv = (other.getBottom() - this.getTop()) / delta;
-		} else if (this.getTop() <= other.getTop() && other.getTop() <= this.getBottom()
-				&& this.getBottom() <= other.getBottom()) {
-			rv = (this.getBottom() - other.getTop()) / delta;
-		} else if (this.getTop() <= other.getTop() && other.getTop() <= other.getBottom()
-				&& other.getBottom() <= this.getBottom()) {
-			rv = (other.getBottom() - other.getTop()) / delta;
-		} else if (other.getTop() <= this.getTop() && this.getTop() <= this.getBottom()
-				&& this.getBottom() <= other.getBottom()) {
-			rv = (this.getBottom() - this.getTop()) / delta;
-		}
+    public boolean horizontallyOverlaps(Rectangle other) {
+        return horizontalOverlap(other) > 0;
+    }
 
-		return rv;
+    public float verticalOverlapRatio(Rectangle other) {
+        float rv = 0, delta = Math.min(this.getBottom() - this.getTop(), other.getBottom() - other.getTop());
 
-	}
+        if (other.getTop() <= this.getTop() && this.getTop() <= other.getBottom()
+                && other.getBottom() <= this.getBottom()) {
+            rv = (other.getBottom() - this.getTop()) / delta;
+        } else if (this.getTop() <= other.getTop() && other.getTop() <= this.getBottom()
+                && this.getBottom() <= other.getBottom()) {
+            rv = (this.getBottom() - other.getTop()) / delta;
+        } else if (this.getTop() <= other.getTop() && other.getTop() <= other.getBottom()
+                && other.getBottom() <= this.getBottom()) {
+            rv = (other.getBottom() - other.getTop()) / delta;
+        } else if (other.getTop() <= this.getTop() && this.getTop() <= this.getBottom()
+                && this.getBottom() <= other.getBottom()) {
+            rv = (this.getBottom() - this.getTop()) / delta;
+        }
 
-	public float overlapRatio(Rectangle other) {
-		double intersectionWidth = Math.max(0,
-				Math.min(this.getRight(), other.getRight()) - Math.max(this.getLeft(), other.getLeft()));
-		double intersectionHeight = Math.max(0,
-				Math.min(this.getBottom(), other.getBottom()) - Math.max(this.getTop(), other.getTop()));
-		double intersectionArea = Math.max(0, intersectionWidth * intersectionHeight);
-		double unionArea = this.getArea() + other.getArea() - intersectionArea;
+        return rv;
 
-		return (float) (intersectionArea / unionArea);
-	}
+    }
 
-	public Rectangle merge(Rectangle other) {
-		this.setRect(this.createUnion(other));
-		return this;
-	}
+    public float overlapRatio(Rectangle other) {
+        double intersectionWidth = Math.max(0,
+                Math.min(this.getRight(), other.getRight()) - Math.max(this.getLeft(), other.getLeft()));
+        double intersectionHeight = Math.max(0,
+                Math.min(this.getBottom(), other.getBottom()) - Math.max(this.getTop(), other.getTop()));
+        double intersectionArea = Math.max(0, intersectionWidth * intersectionHeight);
+        double unionArea = this.getArea() + other.getArea() - intersectionArea;
 
-	public float getTop() {
-		return (float) this.getMinY();
-	}
+        return (float) (intersectionArea / unionArea);
+    }
 
-	public void setTop(float top) {
-		float deltaHeight = top - this.y;
-		this.setRect(this.x, top, this.width, this.height - deltaHeight);
-	}
+    public Rectangle merge(Rectangle other) {
+        this.setRect(this.createUnion(other));
+        return this;
+    }
 
-	public float getRight() {
-		return (float) this.getMaxX();
-	}
+    public float getTop() {
+        return (float) this.getMinY();
+    }
 
-	public void setRight(float right) {
-		this.setRect(this.x, this.y, right - this.x, this.height);
-	}
+    public void setTop(float top) {
+        float deltaHeight = top - this.y;
+        this.setRect(this.x, top, this.width, this.height - deltaHeight);
+    }
 
-	public float getLeft() {
-		return (float) this.getMinX();
-	}
+    public float getRight() {
+        return (float) this.getMaxX();
+    }
 
-	public void setLeft(float left) {
-		float deltaWidth = left - this.x;
-		this.setRect(left, this.y, this.width - deltaWidth, this.height);
-	}
+    public void setRight(float right) {
+        this.setRect(this.x, this.y, right - this.x, this.height);
+    }
 
-	public float getBottom() {
-		return (float) this.getMaxY();
-	}
+    public float getLeft() {
+        return (float) this.getMinX();
+    }
 
-	public void setBottom(float bottom) {
-		this.setRect(this.x, this.y, this.width, bottom - this.y);
-	}
+    public void setLeft(float left) {
+        float deltaWidth = left - this.x;
+        this.setRect(left, this.y, this.width - deltaWidth, this.height);
+    }
 
-	public Point2D[] getPoints() {
-		return new Point2D[] { new Point2D.Float(this.getLeft(), this.getTop()),
-				new Point2D.Float(this.getRight(), this.getTop()), new Point2D.Float(this.getRight(), this.getBottom()),
-				new Point2D.Float(this.getLeft(), this.getBottom()) };
-	}
+    public float getBottom() {
+        return (float) this.getMaxY();
+    }
 
-	@Override
-	public String toString() {
-		StringBuilder sb = new StringBuilder();
-		String s = super.toString();
-		sb.append(s.substring(0, s.length() - 1));
-		sb.append(String.format(",bottom=%f,right=%f]", this.getBottom(), this.getRight()));
-		return sb.toString();
-	}
+    public void setBottom(float bottom) {
+        this.setRect(this.x, this.y, this.width, bottom - this.y);
+    }
 
-	/**
-	 * @param rectangles
-	 * @return minimum bounding box that contains all the rectangles
-	 */
-	public static Rectangle boundingBoxOf(List<? extends Rectangle> rectangles) {
-		float minx = java.lang.Float.MAX_VALUE;
-		float miny = java.lang.Float.MAX_VALUE;
-		float maxx = java.lang.Float.MIN_VALUE;
-		float maxy = java.lang.Float.MIN_VALUE;
+    public Point2D[] getPoints() {
+        return new Point2D[]{new Point2D.Float(this.getLeft(), this.getTop()),
+                new Point2D.Float(this.getRight(), this.getTop()), new Point2D.Float(this.getRight(), this.getBottom()),
+                new Point2D.Float(this.getLeft(), this.getBottom())};
+    }
 
-		for (Rectangle r : rectangles) {
-			minx = (float) Math.min(r.getMinX(), minx);
-			miny = (float) Math.min(r.getMinY(), miny);
-			maxx = (float) Math.max(r.getMaxX(), maxx);
-			maxy = (float) Math.max(r.getMaxY(), maxy);
-		}
-		return new Rectangle(miny, minx, maxx - minx, maxy - miny);
-	}
+    @Override
+    public String toString() {
+        StringBuilder sb = new StringBuilder();
+        String s = super.toString();
+        sb.append(s.substring(0, s.length() - 1));
+        sb.append(String.format(",bottom=%f,right=%f]", this.getBottom(), this.getRight()));
+        return sb.toString();
+    }
 
 }

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/tableextraction/model/RectangleSpatialIndex.java

@@ -1,12 +1,11 @@
 package com.iqser.red.service.redaction.v1.server.tableextraction.model;
 
-import java.util.ArrayList;
-import java.util.List;
-
+import com.iqser.red.service.redaction.v1.server.tableextraction.utils.Utils;
 import org.locationtech.jts.geom.Envelope;
 import org.locationtech.jts.index.strtree.STRtree;
 
-import com.iqser.red.service.redaction.v1.server.tableextraction.utils.Utils;
+import java.util.ArrayList;
+import java.util.List;
 
 @SuppressWarnings("all")
 public class RectangleSpatialIndex<T extends Rectangle> {

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/tableextraction/model/Ruling.java

@@ -1,20 +1,13 @@
 package com.iqser.red.service.redaction.v1.server.tableextraction.model;
 
+import com.iqser.red.service.redaction.v1.server.tableextraction.utils.CohenSutherlandClipping;
+import com.iqser.red.service.redaction.v1.server.tableextraction.utils.Utils;
+import lombok.extern.slf4j.Slf4j;
+
 import java.awt.geom.Line2D;
 import java.awt.geom.Point2D;
 import java.awt.geom.Rectangle2D;
-import java.util.ArrayList;
-import java.util.Collections;
-import java.util.Comparator;
-import java.util.Formatter;
-import java.util.List;
-import java.util.Map;
-import java.util.TreeMap;
-
-import com.iqser.red.service.redaction.v1.server.tableextraction.utils.CohenSutherlandClipping;
-import com.iqser.red.service.redaction.v1.server.tableextraction.utils.Utils;
-
-import lombok.extern.slf4j.Slf4j;
+import java.util.*;
 
 
 @Slf4j
@@ -23,13 +16,127 @@ public class Ruling extends Line2D.Float {
 
     private static int PERPENDICULAR_PIXEL_EXPAND_AMOUNT = 2;
 
-    private enum SOType {VERTICAL, HRIGHT, HLEFT}
-
-
     public Ruling(Point2D p1, Point2D p2) {
         super(p1, p2);
     }
 
+    public static List<Ruling> cropRulingsToArea(List<Ruling> rulings, Rectangle2D area) {
+        ArrayList<Ruling> rv = new ArrayList<>();
+        for (Ruling r : rulings) {
+            if (r.intersects(area)) {
+                rv.add(r.intersect(area));
+            }
+        }
+        return rv;
+    }
+
+    // log(n) implementation of find_intersections
+    // based on http://people.csail.mit.edu/indyk/6.838-old/handouts/lec2.pdf
+    public static Map<Point2D, Ruling[]> findIntersections(List<Ruling> horizontals, List<Ruling> verticals) {
+
+        class SortObject {
+            protected SOType type;
+            protected float position;
+            protected Ruling ruling;
+
+            public SortObject(SOType type, float position, Ruling ruling) {
+                this.type = type;
+                this.position = position;
+                this.ruling = ruling;
+            }
+        }
+
+        List<SortObject> sos = new ArrayList<>();
+
+        TreeMap<Ruling, Boolean> tree = new TreeMap<>(new Comparator<Ruling>() {
+            @Override
+            public int compare(Ruling o1, Ruling o2) {
+                return java.lang.Double.compare(o1.getTop(), o2.getTop());
+            }
+        });
+
+        TreeMap<Point2D, Ruling[]> rv = new TreeMap<>(new Comparator<Point2D>() {
+            @Override
+            public int compare(Point2D o1, Point2D o2) {
+                if (o1.getY() > o2.getY()) {
+                    return 1;
+                }
+                if (o1.getY() < o2.getY()) {
+                    return -1;
+                }
+                if (o1.getX() > o2.getX()) {
+                    return 1;
+                }
+                if (o1.getX() < o2.getX()) {
+                    return -1;
+                }
+                return 0;
+            }
+        });
+
+        for (Ruling h : horizontals) {
+            sos.add(new SortObject(SOType.HLEFT, h.getLeft() - PERPENDICULAR_PIXEL_EXPAND_AMOUNT, h));
+            sos.add(new SortObject(SOType.HRIGHT, h.getRight() + PERPENDICULAR_PIXEL_EXPAND_AMOUNT, h));
+        }
+
+        for (Ruling v : verticals) {
+            sos.add(new SortObject(SOType.VERTICAL, v.getLeft(), v));
+        }
+
+        Collections.sort(sos, new Comparator<SortObject>() {
+            @Override
+            public int compare(SortObject a, SortObject b) {
+                int rv;
+                if (Utils.feq(a.position, b.position)) {
+                    if (a.type == SOType.VERTICAL && b.type == SOType.HLEFT) {
+                        rv = 1;
+                    } else if (a.type == SOType.VERTICAL && b.type == SOType.HRIGHT) {
+                        rv = -1;
+                    } else if (a.type == SOType.HLEFT && b.type == SOType.VERTICAL) {
+                        rv = -1;
+                    } else if (a.type == SOType.HRIGHT && b.type == SOType.VERTICAL) {
+                        rv = 1;
+                    } else {
+                        rv = java.lang.Double.compare(a.position, b.position);
+                    }
+                } else {
+                    return java.lang.Double.compare(a.position, b.position);
+                }
+                return rv;
+            }
+        });
+
+        for (SortObject so : sos) {
+            switch (so.type) {
+                case VERTICAL:
+                    for (Map.Entry<Ruling, Boolean> h : tree.entrySet()) {
+                        try {
+                            Point2D i = h.getKey().intersectionPoint(so.ruling);
+                            if (i == null) {
+                                continue;
+                            }
+                            rv.put(i,
+                                    new Ruling[]{h.getKey().expand(PERPENDICULAR_PIXEL_EXPAND_AMOUNT),
+                                            so.ruling.expand(PERPENDICULAR_PIXEL_EXPAND_AMOUNT)});
+                        } catch (UnsupportedOperationException e) {
+                            log.info("Some line are oblique, ignoring...");
+                            continue;
+                        }
+                    }
+                    break;
+                case HRIGHT:
+                    tree.remove(so.ruling);
+                    break;
+                case HLEFT:
+                    tree.put(so.ruling, true);
+                    break;
+            }
+        }
+
+        return rv;
+
+    }
+
     public boolean vertical() {
         return this.length() > 0 && Utils.feq(this.x1, this.x2); //diff < ORIENTATION_CHECK_THRESHOLD;
     }
@@ -38,13 +145,13 @@ public class Ruling extends Line2D.Float {
         return this.length() > 0 && Utils.feq(this.y1, this.y2); //diff < ORIENTATION_CHECK_THRESHOLD;
     }
 
+    // attributes that make sense only for non-oblique lines
+    // these are used to have a single collapse method (in page, currently)
+
     public boolean oblique() {
         return !(this.vertical() || this.horizontal());
     }
 
-    // attributes that make sense only for non-oblique lines
-    // these are used to have a single collapse method (in page, currently)
-
     public float getPosition() {
         if (this.oblique()) {
             throw new UnsupportedOperationException();
@@ -52,7 +159,6 @@ public class Ruling extends Line2D.Float {
         return this.vertical() ? this.getLeft() : this.getTop();
     }
 
-
     public float getStart() {
         if (this.oblique()) {
             throw new UnsupportedOperationException();
@@ -102,12 +208,10 @@ public class Ruling extends Line2D.Float {
         }
     }
 
-
     public boolean perpendicularTo(Ruling other) {
         return this.vertical() == other.horizontal();
     }
 
-
     public boolean nearlyIntersects(Ruling another, int colinearOrParallelExpandAmount) {
         if (this.intersectsLine(another)) {
             return true;
@@ -238,7 +342,6 @@ public class Ruling extends Line2D.Float {
         return angle;
     }
 
-
     @Override
     public String toString() {
         StringBuilder sb = new StringBuilder();
@@ -248,122 +351,7 @@ public class Ruling extends Line2D.Float {
         return rv;
     }
 
-    public static List<Ruling> cropRulingsToArea(List<Ruling> rulings, Rectangle2D area) {
-        ArrayList<Ruling> rv = new ArrayList<>();
-        for (Ruling r : rulings) {
-            if (r.intersects(area)) {
-                rv.add(r.intersect(area));
-            }
-        }
-        return rv;
-    }
-
-    // log(n) implementation of find_intersections
-    // based on http://people.csail.mit.edu/indyk/6.838-old/handouts/lec2.pdf
-    public static Map<Point2D, Ruling[]> findIntersections(List<Ruling> horizontals, List<Ruling> verticals) {
-
-        class SortObject {
-            protected SOType type;
-            protected float position;
-            protected Ruling ruling;
-
-            public SortObject(SOType type, float position, Ruling ruling) {
-                this.type = type;
-                this.position = position;
-                this.ruling = ruling;
-            }
-        }
-
-        List<SortObject> sos = new ArrayList<>();
-
-        TreeMap<Ruling, Boolean> tree = new TreeMap<>(new Comparator<Ruling>() {
-            @Override
-            public int compare(Ruling o1, Ruling o2) {
-                return java.lang.Double.compare(o1.getTop(), o2.getTop());
-            }
-        });
-
-        TreeMap<Point2D, Ruling[]> rv = new TreeMap<>(new Comparator<Point2D>() {
-            @Override
-            public int compare(Point2D o1, Point2D o2) {
-                if (o1.getY() > o2.getY()) {
-                    return 1;
-                }
-                if (o1.getY() < o2.getY()) {
-                    return -1;
-                }
-                if (o1.getX() > o2.getX()) {
-                    return 1;
-                }
-                if (o1.getX() < o2.getX()) {
-                    return -1;
-                }
-                return 0;
-            }
-        });
-
-        for (Ruling h : horizontals) {
-            sos.add(new SortObject(SOType.HLEFT, h.getLeft() - PERPENDICULAR_PIXEL_EXPAND_AMOUNT, h));
-            sos.add(new SortObject(SOType.HRIGHT, h.getRight() + PERPENDICULAR_PIXEL_EXPAND_AMOUNT, h));
-        }
-
-        for (Ruling v : verticals) {
-            sos.add(new SortObject(SOType.VERTICAL, v.getLeft(), v));
-        }
-
-        Collections.sort(sos, new Comparator<SortObject>() {
-            @Override
-            public int compare(SortObject a, SortObject b) {
-                int rv;
-                if (Utils.feq(a.position, b.position)) {
-                    if (a.type == SOType.VERTICAL && b.type == SOType.HLEFT) {
-                        rv = 1;
-                    } else if (a.type == SOType.VERTICAL && b.type == SOType.HRIGHT) {
-                        rv = -1;
-                    } else if (a.type == SOType.HLEFT && b.type == SOType.VERTICAL) {
-                        rv = -1;
-                    } else if (a.type == SOType.HRIGHT && b.type == SOType.VERTICAL) {
-                        rv = 1;
-                    } else {
-                        rv = java.lang.Double.compare(a.position, b.position);
-                    }
-                } else {
-                    return java.lang.Double.compare(a.position, b.position);
-                }
-                return rv;
-            }
-        });
-
-        for (SortObject so : sos) {
-            switch (so.type) {
-                case VERTICAL:
-                    for (Map.Entry<Ruling, Boolean> h : tree.entrySet()) {
-                        try {
-                            Point2D i = h.getKey().intersectionPoint(so.ruling);
-                            if (i == null) {
-                                continue;
-                            }
-                            rv.put(i,
-                                    new Ruling[]{h.getKey().expand(PERPENDICULAR_PIXEL_EXPAND_AMOUNT),
-                                            so.ruling.expand(PERPENDICULAR_PIXEL_EXPAND_AMOUNT)});
-                        } catch(UnsupportedOperationException e){
-                            log.info("Some line are oblique, ignoring...");
-                            continue;
-                        }
-                    }
-                    break;
-                case HRIGHT:
-                    tree.remove(so.ruling);
-                    break;
-                case HLEFT:
-                    tree.put(so.ruling, true);
-                    break;
-            }
-        }
-
-        return rv;
-
-    }
+    private enum SOType {VERTICAL, HRIGHT, HLEFT}
 
 
 }

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/tableextraction/model/Table.java

@@ -1,22 +1,13 @@
 package com.iqser.red.service.redaction.v1.server.tableextraction.model;
 
-import java.util.ArrayList;
-import java.util.Collections;
-import java.util.Comparator;
-import java.util.HashMap;
-import java.util.Iterator;
-import java.util.List;
-import java.util.Map;
-import java.util.TreeMap;
-
-import org.apache.commons.collections4.CollectionUtils;
-
 import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
 import com.iqser.red.service.redaction.v1.server.tableextraction.utils.Utils;
-
 import lombok.Getter;
 import lombok.Setter;
 import lombok.extern.slf4j.Slf4j;
+import org.apache.commons.collections4.CollectionUtils;
+
+import java.util.*;
 
 @Slf4j
 public class Table extends AbstractTextContainer {
@@ -24,21 +15,14 @@ public class Table extends AbstractTextContainer {
     private final TreeMap<CellPosition, Cell> cells = new TreeMap<>();
 
     private final RectangleSpatialIndex<Cell> si = new RectangleSpatialIndex<>();
-
+    private final int rotation;
     @Getter
     @Setter
     private String headline;
-
     private int unrotatedRowCount;
-
     private int unrotatedColCount;
-
     private int rowCount = -1;
-
     private int colCount = -1;
-
-    private final int rotation;
-
     private List<List<Cell>> rows;
 
 
@@ -62,8 +46,8 @@ public class Table extends AbstractTextContainer {
 
             // Ignore rows that does not contain any cells and values.
             List<List<Cell>> rowsToRemove = new ArrayList<>();
-            for (List<Cell> row: rows){
-                if (row.size() == 1 && row.get(0).getTextBlocks().isEmpty()){
+            for (List<Cell> row : rows) {
+                if (row.size() == 1 && row.get(0).getTextBlocks().isEmpty()) {
                     rowsToRemove.add(row);
                 }
             }
@@ -110,7 +94,7 @@ public class Table extends AbstractTextContainer {
         // we move from left to right and top to bottom
         for (int rowIndex = 0; rowIndex < rows.size(); rowIndex++) {
             List<Cell> rowCells = rows.get(rowIndex);
-            if(rowCells.size() == 1){
+            if (rowCells.size() == 1) {
                 continue;
             }
 
@@ -275,7 +259,7 @@ public class Table extends AbstractTextContainer {
 
         cells.sort(Collections.reverseOrder((arg0, arg1) -> Float.compare(Utils.round(arg0.getBottom(), 2),
                 Utils.round(arg1
-                .getBottom(), 2))));
+                        .getBottom(), 2))));
 
         Iterator<Cell> iter = cells.iterator();
         Cell c = iter.next();
@@ -367,4 +351,4 @@ public class Table extends AbstractTextContainer {
         return sb.toString();
     }
 
-}
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/tableextraction/service/RulingCleaningService.java

@@ -1,19 +1,13 @@
 package com.iqser.red.service.redaction.v1.server.tableextraction.service;
 
-import java.awt.geom.Line2D;
-import java.awt.geom.Point2D;
-import java.util.ArrayList;
-import java.util.Collections;
-import java.util.Comparator;
-import java.util.HashMap;
-import java.util.List;
-import java.util.Map;
-
-import org.springframework.stereotype.Service;
-
 import com.iqser.red.service.redaction.v1.server.tableextraction.model.CleanRulings;
 import com.iqser.red.service.redaction.v1.server.tableextraction.model.Ruling;
 import com.iqser.red.service.redaction.v1.server.tableextraction.utils.Utils;
+import org.springframework.stereotype.Service;
+
+import java.awt.geom.Line2D;
+import java.awt.geom.Point2D;
+import java.util.*;
 
 @Service
 public class RulingCleaningService {

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/tableextraction/service/TableExtractionService.java

@@ -1,31 +1,57 @@
 package com.iqser.red.service.redaction.v1.server.tableextraction.service;
 
-import java.awt.geom.Point2D;
-import java.util.ArrayList;
-import java.util.Comparator;
-import java.util.HashMap;
-import java.util.HashSet;
-import java.util.Iterator;
-import java.util.List;
-import java.util.Map;
-import java.util.Set;
-import java.util.stream.Collectors;
-
-import org.springframework.stereotype.Service;
-
 import com.iqser.red.service.redaction.v1.server.classification.model.Page;
 import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
-import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
-import com.iqser.red.service.redaction.v1.server.tableextraction.model.Cell;
-import com.iqser.red.service.redaction.v1.server.tableextraction.model.CleanRulings;
-import com.iqser.red.service.redaction.v1.server.tableextraction.model.Rectangle;
-import com.iqser.red.service.redaction.v1.server.tableextraction.model.Ruling;
-import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
+import com.iqser.red.service.redaction.v1.server.tableextraction.model.*;
 import com.iqser.red.service.redaction.v1.server.tableextraction.utils.Utils;
+import org.springframework.stereotype.Service;
+
+import java.awt.geom.Point2D;
+import java.util.*;
+import java.util.stream.Collectors;
 
 @Service
 public class TableExtractionService {
 
+    private static final Comparator<Point2D> X_FIRST_POINT_COMPARATOR = (arg0, arg1) -> {
+
+        int rv = 0;
+        float arg0X = Utils.round(arg0.getX(), 2);
+        float arg0Y = Utils.round(arg0.getY(), 2);
+        float arg1X = Utils.round(arg1.getX(), 2);
+        float arg1Y = Utils.round(arg1.getY(), 2);
+
+        if (arg0X > arg1X) {
+            rv = 1;
+        } else if (arg0X < arg1X) {
+            rv = -1;
+        } else if (arg0Y > arg1Y) {
+            rv = 1;
+        } else if (arg0Y < arg1Y) {
+            rv = -1;
+        }
+        return rv;
+    };
+    private static final Comparator<Point2D> POINT_COMPARATOR = (arg0, arg1) -> {
+
+        int rv = 0;
+        float arg0X = Utils.round(arg0.getX(), 2);
+        float arg0Y = Utils.round(arg0.getY(), 2);
+        float arg1X = Utils.round(arg1.getX(), 2);
+        float arg1Y = Utils.round(arg1.getY(), 2);
+
+        if (arg0Y > arg1Y) {
+            rv = 1;
+        } else if (arg0Y < arg1Y) {
+            rv = -1;
+        } else if (arg0X > arg1X) {
+            rv = 1;
+        } else if (arg0X < arg1X) {
+            rv = -1;
+        }
+        return rv;
+    };
+
     public void extractTables(CleanRulings cleanRulings, Page page) {
 
         List<Cell> cells = findCells(cleanRulings.getHorizontal(), cleanRulings.getVertical());
@@ -80,7 +106,6 @@ public class TableExtractionService {
         page.getTextBlocks().removeAll(toBeRemoved);
     }
 
-
     public List<Cell> findCells(List<Ruling> horizontalRulingLines, List<Ruling> verticalRulingLines) {
 
         List<Cell> cellsFound = new ArrayList<>();
@@ -133,7 +158,6 @@ public class TableExtractionService {
         return cellsFound;
     }
 
-
     private List<Rectangle> findSpreadsheetsFromCells(List<? extends Rectangle> cells) {
         // via: http://stackoverflow.com/questions/13746284/merging-multiple-adjacent-rectangles-into-one-polygon
         List<Rectangle> rectangles = new ArrayList<>();
@@ -233,47 +257,6 @@ public class TableExtractionService {
         return rectangles;
     }
 
-
-    private static final Comparator<Point2D> X_FIRST_POINT_COMPARATOR = (arg0, arg1) -> {
-
-        int rv = 0;
-        float arg0X = Utils.round(arg0.getX(), 2);
-        float arg0Y = Utils.round(arg0.getY(), 2);
-        float arg1X = Utils.round(arg1.getX(), 2);
-        float arg1Y = Utils.round(arg1.getY(), 2);
-
-        if (arg0X > arg1X) {
-            rv = 1;
-        } else if (arg0X < arg1X) {
-            rv = -1;
-        } else if (arg0Y > arg1Y) {
-            rv = 1;
-        } else if (arg0Y < arg1Y) {
-            rv = -1;
-        }
-        return rv;
-    };
-
-    private static final Comparator<Point2D> POINT_COMPARATOR = (arg0, arg1) -> {
-
-        int rv = 0;
-        float arg0X = Utils.round(arg0.getX(), 2);
-        float arg0Y = Utils.round(arg0.getY(), 2);
-        float arg1X = Utils.round(arg1.getX(), 2);
-        float arg1Y = Utils.round(arg1.getY(), 2);
-
-        if (arg0Y > arg1Y) {
-            rv = 1;
-        } else if (arg0Y < arg1Y) {
-            rv = -1;
-        } else if (arg0X > arg1X) {
-            rv = 1;
-        } else if (arg0X < arg1X) {
-            rv = -1;
-        }
-        return rv;
-    };
-
     private enum Direction {
         HORIZONTAL, VERTICAL
     }

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/tableextraction/utils/CohenSutherlandClipping.java

@@ -19,21 +19,24 @@ import java.awt.geom.Rectangle2D;
  * clipping algorithm (line against clip rectangle).
  */
 @SuppressWarnings("all")
-public final class CohenSutherlandClipping
-{
+public final class CohenSutherlandClipping {
+    private static final int INSIDE = 0;
+    private static final int LEFT = 1;
+    private static final int RIGHT = 2;
+    private static final int BOTTOM = 4;
+    private static final int TOP = 8;
     private double xMin;
     private double yMin;
     private double xMax;
     private double yMax;
-
     /**
      * Creates a Cohen Sutherland clipper with clip rect (0, 0, 0, 0).
      */
     public CohenSutherlandClipping() {
     }
-
     /**
      * Creates a Cohen Sutherland clipper with the given clip rectangle.
+     *
      * @param clip the clip rectangle to use
      */
     public CohenSutherlandClipping(Rectangle2D clip) {
@@ -42,6 +45,7 @@ public final class CohenSutherlandClipping
 
     /**
      * Sets the clip rectangle.
+     *
      * @param clip the clip rectangle
      */
     public void setClip(Rectangle2D clip) {
@@ -51,19 +55,13 @@ public final class CohenSutherlandClipping
         yMax = yMin + clip.getHeight();
     }
 
-    private static final int INSIDE = 0;
-    private static final int LEFT   = 1;
-    private static final int RIGHT  = 2;
-    private static final int BOTTOM = 4;
-    private static final int TOP    = 8;
-
     private final int regionCode(double x, double y) {
-        int code = x < xMin 
-            ? LEFT
-            : x > xMax
+        int code = x < xMin
+                ? LEFT
+                : x > xMax
                 ? RIGHT
                 : INSIDE;
-             if (y < yMin) code |= BOTTOM;
+        if (y < yMin) code |= BOTTOM;
         else if (y > yMax) code |= TOP;
         return code;
     }
@@ -71,6 +69,7 @@ public final class CohenSutherlandClipping
     /**
      * Clips a given line against the clip rectangle.
      * The modification (if needed) is done in place.
+     *
      * @param line the line to clip
      * @return true if line is clipped, false if line is
      * totally outside the clip rect.
@@ -87,9 +86,9 @@ public final class CohenSutherlandClipping
 
         boolean vertical = p1x == p2x;
 
-        double slope = vertical 
-            ? 0d
-            : (p2y-p1y)/(p2x-p1x);
+        double slope = vertical
+                ? 0d
+                : (p2y - p1y) / (p2x - p1x);
 
         int c1 = regionCode(p1x, p1y);
         int c2 = regionCode(p2x, p2y);
@@ -103,31 +102,27 @@ public final class CohenSutherlandClipping
 
             if ((c & LEFT) != INSIDE) {
                 qx = xMin;
-                qy = (Utils.feq(qx, p1x) ? 0 : qx-p1x)*slope + p1y;
-            }
-            else if ((c & RIGHT) != INSIDE) {
+                qy = (Utils.feq(qx, p1x) ? 0 : qx - p1x) * slope + p1y;
+            } else if ((c & RIGHT) != INSIDE) {
                 qx = xMax;
-                qy = (Utils.feq(qx, p1x) ? 0 : qx-p1x)*slope + p1y;
-            }
-            else if ((c & BOTTOM) != INSIDE) {
+                qy = (Utils.feq(qx, p1x) ? 0 : qx - p1x) * slope + p1y;
+            } else if ((c & BOTTOM) != INSIDE) {
                 qy = yMin;
                 qx = vertical
-                    ? p1x
-                    : (Utils.feq(qy, p1y) ? 0 : qy-p1y)/slope + p1x;
-            }
-            else if ((c & TOP) != INSIDE) {
+                        ? p1x
+                        : (Utils.feq(qy, p1y) ? 0 : qy - p1y) / slope + p1x;
+            } else if ((c & TOP) != INSIDE) {
                 qy = yMax;
                 qx = vertical
-                    ? p1x
-                    : (Utils.feq(qy, p1y) ? 0 : qy-p1y)/slope + p1x;
+                        ? p1x
+                        : (Utils.feq(qy, p1y) ? 0 : qy - p1y) / slope + p1x;
             }
 
             if (c == c1) {
                 p1x = qx;
                 p1y = qy;
-                c1  = regionCode(p1x, p1y);
-            }
-            else {
+                c1 = regionCode(p1x, p1y);
+            } else {
                 p2x = qx;
                 p2y = qy;
                 c2 = regionCode(p2x, p2y);
@@ -137,4 +132,4 @@ public final class CohenSutherlandClipping
         return true;
     }
 }
-// end of file
+// end of file

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/tableextraction/utils/QuickSort.java

@@ -10,11 +10,6 @@ import java.util.List;
  */
 public final class QuickSort {
 
-    private QuickSort() {
-
-    }
-
-
     private static final Comparator<? extends Comparable> OBJCOMP = new Comparator<Comparable>() {
         @Override
         public int compare(Comparable object1, Comparable object2) {
@@ -24,6 +19,10 @@ public final class QuickSort {
     };
 
 
+    private QuickSort() {
+
+    }
+
     /**
      * Sorts the given list using the given comparator.
      *

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/tableextraction/utils/Utils.java

@@ -1,11 +1,11 @@
 package com.iqser.red.service.redaction.v1.server.tableextraction.utils;
 
+import lombok.extern.slf4j.Slf4j;
+
 import java.math.BigDecimal;
 import java.util.Comparator;
 import java.util.List;
 
-import lombok.extern.slf4j.Slf4j;
-
 @Slf4j
 @SuppressWarnings("all")
 public class Utils {

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/visualization/service/PdfVisualisationService.java

@@ -1,15 +1,5 @@
 package com.iqser.red.service.redaction.v1.server.visualization.service;
 
-import java.awt.Color;
-import java.io.IOException;
-import java.util.List;
-
-import org.apache.pdfbox.pdmodel.PDDocument;
-import org.apache.pdfbox.pdmodel.PDPage;
-import org.apache.pdfbox.pdmodel.PDPageContentStream;
-import org.apache.pdfbox.pdmodel.font.PDType1Font;
-import org.springframework.stereotype.Service;
-
 import com.iqser.red.service.redaction.v1.server.classification.model.Document;
 import com.iqser.red.service.redaction.v1.server.classification.model.Page;
 import com.iqser.red.service.redaction.v1.server.classification.model.Paragraph;
@@ -17,9 +7,17 @@ import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
 import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
 import com.iqser.red.service.redaction.v1.server.tableextraction.model.Cell;
 import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
-
 import lombok.RequiredArgsConstructor;
 import lombok.extern.slf4j.Slf4j;
+import org.apache.pdfbox.pdmodel.PDDocument;
+import org.apache.pdfbox.pdmodel.PDPage;
+import org.apache.pdfbox.pdmodel.PDPageContentStream;
+import org.apache.pdfbox.pdmodel.font.PDType1Font;
+import org.springframework.stereotype.Service;
+
+import java.awt.Color;
+import java.io.IOException;
+import java.util.List;
 
 @Slf4j
 @Service
@@ -34,7 +32,7 @@ public class PdfVisualisationService {
             PDPage pdPage = document.getPage(page - 1);
             PDPageContentStream contentStream = new PDPageContentStream(document, pdPage, PDPageContentStream.AppendMode.APPEND, true);
 
-            for(Paragraph paragraph : classifiedDoc.getParagraphs()) {
+            for (Paragraph paragraph : classifiedDoc.getParagraphs()) {
 
                 for (int i = 0; i <= paragraph.getPageBlocks().size() - 1; i++) {
 
@@ -44,10 +42,10 @@ public class PdfVisualisationService {
                         continue;
                     }
                     if (textBlock instanceof TextBlock) {
-                        textBlock.setClassification((i+1) + "/" + paragraph.getPageBlocks().size());
+                        textBlock.setClassification((i + 1) + "/" + paragraph.getPageBlocks().size());
                         visualizeTextBlock((TextBlock) textBlock, contentStream);
                     } else if (textBlock instanceof Table) {
-                        textBlock.setClassification((i+1) + "/" + paragraph.getPageBlocks().size());
+                        textBlock.setClassification((i + 1) + "/" + paragraph.getPageBlocks().size());
                         visualizeTable((Table) textBlock, contentStream);
                     }
 
@@ -59,7 +57,6 @@ public class PdfVisualisationService {
     }
 
 
-
     public void visualizeClassifications(Document classifiedDoc, PDDocument document) throws IOException {
 
         for (int page = 1; page <= document.getNumberOfPages(); page++) {

redaction-service-v1/redaction-service-server-v1/src/main/resources/application-dev.yaml

@@ -1,4 +1,11 @@
 server:
   port: 8083
 
-configuration-service.url: "http://localhost:8081"
+configuration-service.url: "http://localhost:8081"
+file-management-service.url: "http://localhost:8085"
+
+storage:
+  bucket-name: 'redaction'
+  endpoint: 'http://localhost:9000'
+  key: minioadmin
+  secret: minioadmin

redaction-service-v1/redaction-service-server-v1/src/main/resources/application.yml

@@ -2,6 +2,7 @@ info:
   description: Redaction Service Server V1
 
 configuration-service.url: "http://configuration-service-v1:8080"
+file-management-service.url: "http://file-management-service-v1:8080"
 image-service.url: "http://image-service-v1:8080"
 
 server:
@@ -10,6 +11,20 @@ server:
 spring:
   profiles:
     active: kubernetes
+  rabbitmq:
+    host: ${RABBITMQ_HOST:localhost}
+    port: ${RABBITMQ_PORT:5672}
+    username: ${RABBITMQ_USERNAME:user}
+    password: ${RABBITMQ_PASSWORD:rabbitmq}
+    listener:
+      simple:
+        acknowledge-mode: AUTO
+        concurrency: 2
+        retry:
+          enabled: true
+          max-attempts: 3
+          max-interval: 15000
+        prefetch: 1
 
 management:
   endpoint:
@@ -17,4 +32,11 @@ management:
     prometheus.enabled: ${monitoring.enabled:false}
     health.enabled: true
   endpoints.web.exposure.include: prometheus, health
-  metrics.export.prometheus.enabled: ${monitoring.enabled:false}
+  metrics.export.prometheus.enabled: ${monitoring.enabled:false}
+
+
+storage:
+  signer-type: 'AWSS3V4SignerType'
+  bucket-name: 'redaction'
+  region: 'us-east-1'
+  endpoint: 'https://s3.amazonaws.com'

redaction-service-v1/redaction-service-server-v1/src/test/java/com/iqser/red/service/redaction/v1/server/FileSystemBackedStorageService.java

@@ -0,0 +1,51 @@
+package com.iqser.red.service.redaction.v1.server;
+
+import com.iqser.red.storage.commons.exception.StorageObjectDoesNotExist;
+import com.iqser.red.storage.commons.service.StorageService;
+import lombok.SneakyThrows;
+import org.apache.commons.io.IOUtils;
+import org.springframework.core.io.InputStreamResource;
+
+import java.io.File;
+import java.io.FileInputStream;
+import java.io.FileOutputStream;
+import java.util.HashMap;
+import java.util.Map;
+
+public class FileSystemBackedStorageService extends StorageService {
+
+    private final Map<String, File> dataMap = new HashMap<>();
+
+    public FileSystemBackedStorageService() {
+        super(null, null);
+    }
+
+    @SneakyThrows
+    @Override
+    public InputStreamResource getObject(String objectId) {
+
+        var res = dataMap.get(objectId);
+        if (res == null) {
+            throw new StorageObjectDoesNotExist(new RuntimeException());
+        }
+        return new InputStreamResource(new FileInputStream(res));
+
+    }
+
+    @SneakyThrows
+    @Override
+    public void storeObject(String objectId, byte[] data) {
+        File tempFile = File.createTempFile("test", ".tmp");
+
+        IOUtils.write(data, new FileOutputStream(tempFile));
+
+        dataMap.put(objectId, tempFile);
+    }
+
+    public void clearStorage() {
+        this.dataMap.forEach((k, v) -> {
+            v.delete();
+        });
+        this.dataMap.clear();
+    }
+}

redaction-service-v1/redaction-service-server-v1/src/test/java/com/iqser/red/service/redaction/v1/server/RedactionIntegrationTest.java

@@ -1,30 +1,27 @@
 package com.iqser.red.service.redaction.v1.server;
 
-import static org.assertj.core.api.Assertions.assertThat;
-import static org.mockito.Mockito.when;
-import static org.springframework.boot.test.context.SpringBootTest.WebEnvironment.RANDOM_PORT;
-
-import java.io.BufferedReader;
-import java.io.ByteArrayInputStream;
-import java.io.File;
-import java.io.FileInputStream;
-import java.io.FileOutputStream;
-import java.io.IOException;
-import java.io.InputStream;
-import java.io.InputStreamReader;
-import java.net.URL;
-import java.nio.charset.StandardCharsets;
-import java.time.OffsetDateTime;
-import java.util.ArrayList;
-import java.util.HashMap;
-import java.util.List;
-import java.util.Map;
-import java.util.Set;
-import java.util.UUID;
-import java.util.stream.Collectors;
-
+import com.amazonaws.services.s3.AmazonS3;
+import com.fasterxml.jackson.databind.ObjectMapper;
+import com.iqser.red.service.configuration.v1.api.model.*;
+import com.iqser.red.service.configuration.v1.api.resource.DictionaryResource;
+import com.iqser.red.service.file.management.v1.api.model.FileType;
+import com.iqser.red.service.redaction.v1.model.*;
+import com.iqser.red.service.redaction.v1.server.classification.model.SectionText;
+import com.iqser.red.service.redaction.v1.server.client.DictionaryClient;
+import com.iqser.red.service.redaction.v1.server.client.ImageClassificationClient;
+import com.iqser.red.service.redaction.v1.server.client.RulesClient;
+import com.iqser.red.service.redaction.v1.server.controller.RedactionController;
+import com.iqser.red.service.redaction.v1.server.memory.MemoryStats;
+import com.iqser.red.service.redaction.v1.server.redaction.service.ReanalyzeService;
+import com.iqser.red.service.redaction.v1.server.redaction.utils.ResourceLoader;
+import com.iqser.red.service.redaction.v1.server.redaction.utils.TextNormalizationUtilities;
+import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
+import com.iqser.red.storage.commons.service.StorageService;
+import lombok.SneakyThrows;
 import org.apache.commons.io.IOUtils;
+import org.junit.After;
 import org.junit.Before;
+import org.junit.Ignore;
 import org.junit.Test;
 import org.junit.runner.RunWith;
 import org.kie.api.KieServices;
@@ -32,48 +29,32 @@ import org.kie.api.builder.KieBuilder;
 import org.kie.api.builder.KieFileSystem;
 import org.kie.api.builder.KieModule;
 import org.kie.api.runtime.KieContainer;
+import org.springframework.amqp.rabbit.core.RabbitTemplate;
 import org.springframework.beans.factory.annotation.Autowired;
+import org.springframework.boot.autoconfigure.EnableAutoConfiguration;
+import org.springframework.boot.autoconfigure.amqp.RabbitAutoConfiguration;
 import org.springframework.boot.test.context.SpringBootTest;
-import org.springframework.boot.test.context.TestConfiguration;
 import org.springframework.boot.test.mock.mockito.MockBean;
 import org.springframework.context.annotation.Bean;
+import org.springframework.context.annotation.Configuration;
+import org.springframework.context.annotation.Import;
+import org.springframework.context.annotation.Primary;
 import org.springframework.core.io.ClassPathResource;
 import org.springframework.test.context.junit4.SpringRunner;
 
-import com.fasterxml.jackson.databind.ObjectMapper;
-import com.iqser.red.service.configuration.v1.api.model.Colors;
-import com.iqser.red.service.configuration.v1.api.model.DictionaryEntry;
-import com.iqser.red.service.configuration.v1.api.model.DictionaryResponse;
-import com.iqser.red.service.configuration.v1.api.model.RulesResponse;
-import com.iqser.red.service.configuration.v1.api.model.TypeResponse;
-import com.iqser.red.service.configuration.v1.api.model.TypeResult;
-import com.iqser.red.service.redaction.v1.model.AnalyzeRequest;
-import com.iqser.red.service.redaction.v1.model.AnalyzeResult;
-import com.iqser.red.service.redaction.v1.model.AnnotateRequest;
-import com.iqser.red.service.redaction.v1.model.AnnotateResponse;
-import com.iqser.red.service.redaction.v1.model.Comment;
-import com.iqser.red.service.redaction.v1.model.IdRemoval;
-import com.iqser.red.service.redaction.v1.model.ManualForceRedact;
-import com.iqser.red.service.redaction.v1.model.ManualRedactionEntry;
-import com.iqser.red.service.redaction.v1.model.ManualRedactions;
-import com.iqser.red.service.redaction.v1.model.Point;
-import com.iqser.red.service.redaction.v1.model.ReanalyzeResult;
-import com.iqser.red.service.redaction.v1.model.Rectangle;
-import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
-import com.iqser.red.service.redaction.v1.model.RedactionRequest;
-import com.iqser.red.service.redaction.v1.model.RedactionResult;
-import com.iqser.red.service.redaction.v1.model.RenalyzeRequest;
-import com.iqser.red.service.redaction.v1.model.SectionText;
-import com.iqser.red.service.redaction.v1.model.Status;
-import com.iqser.red.service.redaction.v1.server.client.DictionaryClient;
-import com.iqser.red.service.redaction.v1.server.client.ImageClassificationClient;
-import com.iqser.red.service.redaction.v1.server.client.RulesClient;
-import com.iqser.red.service.redaction.v1.server.controller.RedactionController;
-import com.iqser.red.service.redaction.v1.server.redaction.utils.ResourceLoader;
-import com.iqser.red.service.redaction.v1.server.redaction.utils.TextNormalizationUtilities;
+import java.io.*;
+import java.net.URL;
+import java.nio.charset.StandardCharsets;
+import java.time.OffsetDateTime;
+import java.util.*;
+import java.util.stream.Collectors;
+
+import static org.assertj.core.api.Assertions.assertThat;
+import static org.mockito.Mockito.when;
 
 @RunWith(SpringRunner.class)
-@SpringBootTest(webEnvironment = RANDOM_PORT)
+@SpringBootTest(classes = Application.class, webEnvironment = SpringBootTest.WebEnvironment.RANDOM_PORT)
+@Import(RedactionIntegrationTest.RedactionIntegrationTestConfiguration.class)
 public class RedactionIntegrationTest {
 
     private static final String RULES = loadFromClassPath("drools/rules.drl");
@@ -93,6 +74,7 @@ public class RedactionIntegrationTest {
     private static final String SIGNATURE = "signature";
     private static final String FORMULA = "formula";
     private static final String OCR = "ocr";
+    private static final String DOSSIER_REDACTIONS = "dossier_redactions";
 
     private static final String RECOMMENDATION_AUTHOR = "recommendation_CBI_author";
     private static final String RECOMMENDATION_ADDRESS = "recommendation_CBI_address";
@@ -101,9 +83,13 @@ public class RedactionIntegrationTest {
 
     private static final String PII = "PII";
 
+
     @Autowired
     private RedactionController redactionController;
 
+    @Autowired
+    private ReanalyzeService reanalyzeService;
+
     @Autowired
     private ObjectMapper objectMapper;
 
@@ -116,7 +102,20 @@ public class RedactionIntegrationTest {
     @MockBean
     private ImageClassificationClient imageClassificationClient;
 
+    @Autowired
+    private RedactionStorageService redactionStorageService;
+
+    @Autowired
+    private StorageService storageService;
+
+    @MockBean
+    private AmazonS3 amazonS3;
+
+    @MockBean
+    private RabbitTemplate rabbitTemplate;
+
     private final Map<String, List<String>> dictionary = new HashMap<>();
+    private final Map<String, List<String>> dossierDictionary = new HashMap<>();
     private final Map<String, String> typeColorMap = new HashMap<>();
     private final Map<String, Boolean> hintTypeMap = new HashMap<>();
     private final Map<String, Boolean> caseInSensitiveMap = new HashMap<>();
@@ -126,8 +125,11 @@ public class RedactionIntegrationTest {
     private final Map<String, Long> reanlysisVersions = new HashMap<>();
 
     private final static String TEST_RULESET_ID = "123";
+    private final static String TEST_PROJECT_ID = "123";
+    private final static String TEST_FILE_ID = "123";
 
-    @TestConfiguration
+    @Configuration
+    @EnableAutoConfiguration(exclude = {RabbitAutoConfiguration.class})
     public static class RedactionIntegrationTestConfiguration {
 
         @Bean
@@ -146,6 +148,21 @@ public class RedactionIntegrationTest {
             return kieServices.newKieContainer(kieModule.getReleaseId());
         }
 
+        @Bean
+        @Primary
+        public StorageService inmemoryStorage() {
+            return new FileSystemBackedStorageService();
+        }
+
+
+    }
+
+
+    @After
+    public void cleanupStorage() {
+        if (this.storageService instanceof FileSystemBackedStorageService) {
+            ((FileSystemBackedStorageService) this.storageService).clearStorage();
+        }
     }
 
 
@@ -158,30 +175,45 @@ public class RedactionIntegrationTest {
 
         loadDictionaryForTest();
         loadTypeForTest();
-        when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(0L);
-        when(dictionaryClient.getAllTypes(TEST_RULESET_ID)).thenReturn(TypeResponse.builder()
+        when(dictionaryClient.getVersion(TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(0L);
+        when(dictionaryClient.getAllTypes(TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(TypeResponse.builder()
                 .types(getTypeResponse())
                 .build());
-        when(dictionaryClient.getDictionaryForType(VERTEBRATE, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(VERTEBRATE));
-        when(dictionaryClient.getDictionaryForType(ADDRESS, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(ADDRESS));
-        when(dictionaryClient.getDictionaryForType(AUTHOR, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(AUTHOR));
-        when(dictionaryClient.getDictionaryForType(SPONSOR, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(SPONSOR));
-        when(dictionaryClient.getDictionaryForType(NO_REDACTION_INDICATOR, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(NO_REDACTION_INDICATOR));
-        when(dictionaryClient.getDictionaryForType(REDACTION_INDICATOR, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(REDACTION_INDICATOR));
-        when(dictionaryClient.getDictionaryForType(HINT_ONLY, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(HINT_ONLY));
-        when(dictionaryClient.getDictionaryForType(MUST_REDACT, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(MUST_REDACT));
-        when(dictionaryClient.getDictionaryForType(PUBLISHED_INFORMATION, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(PUBLISHED_INFORMATION));
-        when(dictionaryClient.getDictionaryForType(TEST_METHOD, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(TEST_METHOD));
-        when(dictionaryClient.getDictionaryForType(PII, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(PII));
-        when(dictionaryClient.getDictionaryForType(RECOMMENDATION_AUTHOR, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(RECOMMENDATION_AUTHOR));
-        when(dictionaryClient.getDictionaryForType(RECOMMENDATION_ADDRESS, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(RECOMMENDATION_ADDRESS));
-        when(dictionaryClient.getDictionaryForType(FALSE_POSITIVE, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(FALSE_POSITIVE));
-        when(dictionaryClient.getDictionaryForType(PURITY, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(PURITY));
-        when(dictionaryClient.getDictionaryForType(IMAGE, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(IMAGE));
-        when(dictionaryClient.getDictionaryForType(OCR, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(OCR));
-        when(dictionaryClient.getDictionaryForType(LOGO, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(LOGO));
-        when(dictionaryClient.getDictionaryForType(SIGNATURE, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(SIGNATURE));
-        when(dictionaryClient.getDictionaryForType(FORMULA, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(FORMULA));
+
+        when(dictionaryClient.getVersion(TEST_RULESET_ID, TEST_PROJECT_ID)).thenReturn(0L);
+        when(dictionaryClient.getAllTypes(TEST_RULESET_ID, TEST_PROJECT_ID)).thenReturn(TypeResponse.builder()
+                .types(List.of(TypeResult.builder()
+                        .type(DOSSIER_REDACTIONS)
+                        .ruleSetId(TEST_RULESET_ID)
+                        .hexColor( "#ffe187")
+                        .isHint(hintTypeMap.get(DOSSIER_REDACTIONS))
+                        .isCaseInsensitive(caseInSensitiveMap.get(DOSSIER_REDACTIONS))
+                        .isRecommendation(recommendationTypeMap.get(DOSSIER_REDACTIONS))
+                        .rank(rankTypeMap.get(DOSSIER_REDACTIONS))
+                        .build()))
+                .build());
+
+        when(dictionaryClient.getDictionaryForType(VERTEBRATE, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(getDictionaryResponse(VERTEBRATE, false));
+        when(dictionaryClient.getDictionaryForType(ADDRESS, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(getDictionaryResponse(ADDRESS, false));
+        when(dictionaryClient.getDictionaryForType(AUTHOR, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(getDictionaryResponse(AUTHOR, false));
+        when(dictionaryClient.getDictionaryForType(SPONSOR, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(getDictionaryResponse(SPONSOR, false));
+        when(dictionaryClient.getDictionaryForType(NO_REDACTION_INDICATOR, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(getDictionaryResponse(NO_REDACTION_INDICATOR, false));
+        when(dictionaryClient.getDictionaryForType(REDACTION_INDICATOR, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(getDictionaryResponse(REDACTION_INDICATOR, false));
+        when(dictionaryClient.getDictionaryForType(HINT_ONLY, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(getDictionaryResponse(HINT_ONLY, false));
+        when(dictionaryClient.getDictionaryForType(MUST_REDACT, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(getDictionaryResponse(MUST_REDACT, false));
+        when(dictionaryClient.getDictionaryForType(PUBLISHED_INFORMATION, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(getDictionaryResponse(PUBLISHED_INFORMATION, false));
+        when(dictionaryClient.getDictionaryForType(TEST_METHOD, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(getDictionaryResponse(TEST_METHOD, false));
+        when(dictionaryClient.getDictionaryForType(PII, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(getDictionaryResponse(PII, false));
+        when(dictionaryClient.getDictionaryForType(RECOMMENDATION_AUTHOR, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(getDictionaryResponse(RECOMMENDATION_AUTHOR, false));
+        when(dictionaryClient.getDictionaryForType(RECOMMENDATION_ADDRESS, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(getDictionaryResponse(RECOMMENDATION_ADDRESS, false));
+        when(dictionaryClient.getDictionaryForType(FALSE_POSITIVE, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(getDictionaryResponse(FALSE_POSITIVE, false));
+        when(dictionaryClient.getDictionaryForType(PURITY, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(getDictionaryResponse(PURITY, false));
+        when(dictionaryClient.getDictionaryForType(IMAGE, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(getDictionaryResponse(IMAGE, false));
+        when(dictionaryClient.getDictionaryForType(OCR, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(getDictionaryResponse(OCR, false));
+        when(dictionaryClient.getDictionaryForType(LOGO, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(getDictionaryResponse(LOGO, false));
+        when(dictionaryClient.getDictionaryForType(SIGNATURE, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(getDictionaryResponse(SIGNATURE, false));
+        when(dictionaryClient.getDictionaryForType(FORMULA, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(getDictionaryResponse(FORMULA, false));
+        when(dictionaryClient.getDictionaryForType(DOSSIER_REDACTIONS, TEST_RULESET_ID, TEST_PROJECT_ID)).thenReturn(getDictionaryResponse(DOSSIER_REDACTIONS, true));
         when(dictionaryClient.getColors(TEST_RULESET_ID)).thenReturn(colors);
     }
 
@@ -288,6 +320,11 @@ public class RedactionIntegrationTest {
                         .stream()
                         .map(this::cleanDictionaryEntry)
                         .collect(Collectors.toSet()));
+        dossierDictionary.computeIfAbsent(DOSSIER_REDACTIONS, v -> new ArrayList<>())
+                .addAll(ResourceLoader.load("dictionaries/dossier_redactions.txt")
+                        .stream()
+                        .map(this::cleanDictionaryEntry)
+                        .collect(Collectors.toSet()));
     }
 
 
@@ -340,6 +377,7 @@ public class RedactionIntegrationTest {
         hintTypeMap.put(FORMULA, false);
         hintTypeMap.put(LOGO, false);
         hintTypeMap.put(SIGNATURE, false);
+        hintTypeMap.put(DOSSIER_REDACTIONS, false);
 
         caseInSensitiveMap.put(VERTEBRATE, true);
         caseInSensitiveMap.put(ADDRESS, false);
@@ -361,6 +399,7 @@ public class RedactionIntegrationTest {
         caseInSensitiveMap.put(SIGNATURE, true);
         caseInSensitiveMap.put(LOGO, true);
         caseInSensitiveMap.put(FORMULA, true);
+        caseInSensitiveMap.put(DOSSIER_REDACTIONS, false);
 
         recommendationTypeMap.put(VERTEBRATE, false);
         recommendationTypeMap.put(ADDRESS, false);
@@ -382,6 +421,7 @@ public class RedactionIntegrationTest {
         recommendationTypeMap.put(FORMULA, false);
         recommendationTypeMap.put(SIGNATURE, false);
         recommendationTypeMap.put(LOGO, false);
+        recommendationTypeMap.put(DOSSIER_REDACTIONS, false);
 
         rankTypeMap.put(FALSE_POSITIVE, 160);
         rankTypeMap.put(PURITY, 155);
@@ -403,6 +443,7 @@ public class RedactionIntegrationTest {
         rankTypeMap.put(LOGO, 28);
         rankTypeMap.put(SIGNATURE, 27);
         rankTypeMap.put(FORMULA, 26);
+        rankTypeMap.put(DOSSIER_REDACTIONS, 200);
 
         colors.setDefaultColor("#acfc00");
         colors.setNotRedacted("#cccccc");
@@ -429,11 +470,11 @@ public class RedactionIntegrationTest {
     }
 
 
-    private DictionaryResponse getDictionaryResponse(String type) {
+    private DictionaryResponse getDictionaryResponse(String type, boolean isDossierDictionary) {
 
         return DictionaryResponse.builder()
                 .hexColor(typeColorMap.get(type))
-                .entries(toDictionaryEntry(dictionary.get(type)))
+                .entries(isDossierDictionary ? toDictionaryEntry(dossierDictionary.get(type)) : toDictionaryEntry(dictionary.get(type)))
                 .isHint(hintTypeMap.get(type))
                 .isCaseInsensitive(caseInSensitiveMap.get(type))
                 .isRecommendation(recommendationTypeMap.get(type))
@@ -453,6 +494,71 @@ public class RedactionIntegrationTest {
 
 
     @Test
+    public void test270Rotated() {
+        AnalyzeRequest request = prepareStorage("files/Minimal Examples/270Rotated.pdf");
+        MemoryStats.printMemoryStats();
+        AnalyzeResult result = reanalyzeService.analyze(request);
+        assertThat(result).isNotNull();
+    }
+
+
+    @Test
+    @Ignore
+    public void testLargeScannedFileOOM() {
+        AnalyzeRequest request = prepareStorage("scanned/VV-377031.pdf");
+        MemoryStats.printMemoryStats();
+        AnalyzeResult result = reanalyzeService.analyze(request);
+        assertThat(result).isNotNull();
+    }
+
+    @Test
+    public void testMergedImages() throws IOException {
+
+        long start = System.currentTimeMillis();
+        ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/merge_images.pdf");
+
+        AnalyzeRequest request = prepareStorage(pdfFileResource.getInputStream());
+        AnalyzeResult result = reanalyzeService.analyze(request);
+
+        Map<String, List<RedactionLogEntry>> duplicates = new HashMap<>();
+
+        var redactionLog = redactionStorageService.getRedactionLog(TEST_PROJECT_ID, TEST_FILE_ID);
+
+        redactionLog.getRedactionLogEntry().forEach(entry -> {
+            duplicates.computeIfAbsent(entry.getId(), v -> new ArrayList<>()).add(entry);
+        });
+
+        duplicates.entrySet().forEach(entry -> {
+            assertThat(entry.getValue().size()).isEqualTo(1);
+        });
+
+        dictionary.get(AUTHOR).add("Drinking water");
+        when(dictionaryClient.getVersion(TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(1L);
+
+        AnnotateResponse annotateResponse = redactionController.annotate(AnnotateRequest.builder()
+                .projectId(TEST_PROJECT_ID)
+                .fileId(TEST_FILE_ID)
+                .build());
+
+        try (FileOutputStream fileOutputStream = new FileOutputStream("/tmp/Annotated3.pdf")) {
+            fileOutputStream.write(annotateResponse.getDocument());
+        }
+        long rstart = System.currentTimeMillis();
+        reanalyzeService.reanalyze(request);
+
+        long rend = System.currentTimeMillis();
+        System.out.println("reanalysis analysis duration: " + (rend - rstart));
+
+
+        long end = System.currentTimeMillis();
+
+        System.out.println("duration: " + (end - start));
+
+
+    }
+
+    @Test
+    @Ignore
     public void noExceptionShouldBeThrownForAnyFiles() throws IOException {
 
         long start = System.currentTimeMillis();
@@ -465,15 +571,16 @@ public class RedactionIntegrationTest {
             input.addAll(getPathsRecursively(file));
         }
         for (File path : input) {
-            AnalyzeRequest request = AnalyzeRequest.builder()
-                    .ruleSetId(TEST_RULESET_ID)
-                    .document(IOUtils.toByteArray(new FileInputStream(path)))
-                    .build();
+
+            AnalyzeRequest request = prepareStorage(new FileInputStream((path)));
             System.out.println("Redacting file : " + path.getName());
-            AnalyzeResult result = redactionController.analyze(request);
+            AnalyzeResult result = reanalyzeService.analyze(request);
 
             Map<String, List<RedactionLogEntry>> duplicates = new HashMap<>();
-            result.getRedactionLog().getRedactionLogEntry().forEach(entry -> {
+
+            var redactionLog = redactionStorageService.getRedactionLog(TEST_PROJECT_ID, TEST_FILE_ID);
+
+            redactionLog.getRedactionLogEntry().forEach(entry -> {
                 duplicates.computeIfAbsent(entry.getId(), v -> new ArrayList<>()).add(entry);
             });
 
@@ -482,16 +589,10 @@ public class RedactionIntegrationTest {
             });
 
             dictionary.get(AUTHOR).add("Drinking water");
-            when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(1L);
+            when(dictionaryClient.getVersion(TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(1L);
 
             long rstart = System.currentTimeMillis();
-            ReanalyzeResult reanalyzeResult = redactionController.reanalyze(RenalyzeRequest.builder()
-                    .redactionLog(result.getRedactionLog())
-                    .document(IOUtils.toByteArray(new FileInputStream(path)))
-                    .manualRedactions(null)
-                    .text(result.getText())
-                    .ruleSetId(TEST_RULESET_ID)
-                    .build());
+            reanalyzeService.reanalyze(request);
 
             long rend = System.currentTimeMillis();
             System.out.println("reanalysis analysis duration: " + (rend - rstart));
@@ -526,18 +627,16 @@ public class RedactionIntegrationTest {
     @Test
     public void redactionTest() throws IOException {
 
-        System.out.println("redactionTest");
         long start = System.currentTimeMillis();
         ClassPathResource pdfFileResource = new ClassPathResource("files/new/Single Study - Oral (Gavage) Mouse.pdf");
+        AnalyzeRequest request = prepareStorage(pdfFileResource.getInputStream());
 
-        AnalyzeRequest request = AnalyzeRequest.builder()
-                .ruleSetId(TEST_RULESET_ID)
-                .document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
-                .build();
+        AnalyzeResult result = reanalyzeService.analyze(request);
 
-        AnalyzeResult result = redactionController.analyze(request);
+        var redactionLog = redactionStorageService.getRedactionLog(TEST_PROJECT_ID, TEST_FILE_ID);
+        var text = redactionStorageService.getText(TEST_PROJECT_ID, TEST_FILE_ID);
 
-        result.getRedactionLog().getRedactionLogEntry().forEach(entry -> {
+        redactionLog.getRedactionLogEntry().forEach(entry -> {
             if (entry.isImage()) {
                 System.out.println("---->" + entry.getType());
             }
@@ -548,13 +647,13 @@ public class RedactionIntegrationTest {
         System.out.println("first analysis duration: " + (end - start));
 
         try (FileOutputStream fileOutputStream = new FileOutputStream("/tmp/Test.json")) {
-            fileOutputStream.write(objectMapper.writeValueAsBytes(result.getText()));
+            fileOutputStream.write(objectMapper.writeValueAsBytes(redactionStorageService.getText(TEST_PROJECT_ID, TEST_FILE_ID)));
         }
 
         int correctFound = 0;
         loop:
-        for (RedactionLogEntry redactionLogEntry : result.getRedactionLog().getRedactionLogEntry()) {
-            for (SectionText sectionText : result.getText().getSectionTexts()) {
+        for (RedactionLogEntry redactionLogEntry : redactionLog.getRedactionLogEntry()) {
+            for (SectionText sectionText : text.getSectionTexts()) {
                 if (redactionLogEntry.isImage()) {
                     correctFound++;
                     continue loop;
@@ -570,7 +669,7 @@ public class RedactionIntegrationTest {
                 }
             }
         }
-        assertThat(correctFound).isEqualTo(result.getRedactionLog().getRedactionLogEntry().size());
+        assertThat(correctFound).isEqualTo(redactionLog.getRedactionLogEntry().size());
 
         dictionary.get(AUTHOR).add("properties");
         reanlysisVersions.put("properties", 1L);
@@ -581,25 +680,19 @@ public class RedactionIntegrationTest {
         dictionary.get(VERTEBRATE).add("s-metolachlor");
         reanlysisVersions.put("s-metolachlor", 3L);
 
-        when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(3L);
+        when(dictionaryClient.getVersion(TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(3L);
 
-        when(dictionaryClient.getDictionaryForType(VERTEBRATE, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(VERTEBRATE));
+        when(dictionaryClient.getDictionaryForType(VERTEBRATE, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(getDictionaryResponse(VERTEBRATE, false));
 
         start = System.currentTimeMillis();
-        ReanalyzeResult reanalyzeResult = redactionController.reanalyze(RenalyzeRequest.builder()
-                .redactionLog(result.getRedactionLog())
-                .document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
-                .text(result.getText())
-                .ruleSetId(TEST_RULESET_ID)
-                .build());
+        AnalyzeResult reanalyzeResult = reanalyzeService.reanalyze(request);
 
         end = System.currentTimeMillis();
         System.out.println("reanalysis analysis duration: " + (end - start));
 
         AnnotateResponse annotateResponse = redactionController.annotate(AnnotateRequest.builder()
-                .document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
-                .redactionLog(reanalyzeResult.getRedactionLog())
-                .sectionGrid(result.getSectionGrid())
+                .projectId(TEST_PROJECT_ID)
+                .fileId(TEST_FILE_ID)
                 .build());
 
         try (FileOutputStream fileOutputStream = new FileOutputStream("/tmp/Annotated.pdf")) {
@@ -614,19 +707,13 @@ public class RedactionIntegrationTest {
 
         System.out.println("testTableRedaction");
         long start = System.currentTimeMillis();
-        ClassPathResource pdfFileResource = new ClassPathResource("files/Metolachlor/S-Metolachlor_RAR_02_Volume_2_2018-09-06.pdf");
 
-        AnalyzeRequest request = AnalyzeRequest.builder()
-                .ruleSetId(TEST_RULESET_ID)
-                .document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
-                .build();
-
-        AnalyzeResult result = redactionController.analyze(request);
+        AnalyzeRequest request = prepareStorage("files/Metolachlor/S-Metolachlor_RAR_02_Volume_2_2018-09-06.pdf");
+        AnalyzeResult result = reanalyzeService.analyze(request);
 
         AnnotateResponse annotateResponse = redactionController.annotate(AnnotateRequest.builder()
-                .document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
-                .redactionLog(result.getRedactionLog())
-                .sectionGrid(result.getSectionGrid())
+                .projectId(TEST_PROJECT_ID)
+                .fileId(TEST_FILE_ID)
                 .build());
 
         try (FileOutputStream fileOutputStream = new FileOutputStream("/tmp/Annotated.pdf")) {
@@ -681,13 +768,10 @@ public class RedactionIntegrationTest {
 
 //        manualRedactions.getEntriesToAdd().add(manualRedactionEntry);
 
-        AnalyzeRequest request = AnalyzeRequest.builder()
-                .ruleSetId(TEST_RULESET_ID)
-                .document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
-                .manualRedactions(manualRedactions)
-                .build();
 
-        AnalyzeResult result = redactionController.analyze(request);
+        AnalyzeRequest request = prepareStorage(pdfFileResource.getInputStream());
+        request.setManualRedactions(manualRedactions);
+        AnalyzeResult result = reanalyzeService.analyze(request);
 
         manualRedactions.getEntriesToAdd().add(manualRedactionEntry);
         manualRedactions.setIdsToRemove(Set.of(IdRemoval.builder()
@@ -695,20 +779,15 @@ public class RedactionIntegrationTest {
                 .status(Status.APPROVED)
                 .build()));
 
-        ReanalyzeResult reanalyzeResult = redactionController.reanalyze(RenalyzeRequest.builder()
-                .redactionLog(result.getRedactionLog())
-                .document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
-                .manualRedactions(manualRedactions)
-                .text(result.getText())
-                .ruleSetId(TEST_RULESET_ID)
-                .build());
+        reanalyzeService.reanalyze(request);
+
 
         AnnotateResponse annotateResponse = redactionController.annotate(AnnotateRequest.builder()
-                .document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
-                .redactionLog(reanalyzeResult.getRedactionLog())
-                .sectionGrid(result.getSectionGrid())
+                .projectId(TEST_PROJECT_ID)
+                .fileId(TEST_FILE_ID)
                 .build());
 
+
         try (FileOutputStream fileOutputStream = new FileOutputStream("/tmp/Annotated.pdf")) {
             fileOutputStream.write(annotateResponse.getDocument());
         }
@@ -725,11 +804,16 @@ public class RedactionIntegrationTest {
         System.out.println("classificationTest");
         ClassPathResource pdfFileResource = new ClassPathResource("files/Trinexapac/93 Trinexapac-ethyl_RAR_03_Volume_3CA_B-1_2017-03-31.pdf");
 
-        RedactionRequest request = RedactionRequest.builder()
-                .document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
+
+        AnalyzeRequest request = prepareStorage(pdfFileResource.getInputStream());
+
+        RedactionRequest redactionRequest = RedactionRequest.builder()
+                .projectId(request.getProjectId())
+                .fileId(request.getFileId())
+                .ruleSetId(request.getRuleSetId())
                 .build();
 
-        RedactionResult result = redactionController.classify(request);
+        RedactionResult result = redactionController.classify(redactionRequest);
 
         try (FileOutputStream fileOutputStream = new FileOutputStream("/tmp/Classified.pdf")) {
             fileOutputStream.write(result.getDocument());
@@ -743,11 +827,15 @@ public class RedactionIntegrationTest {
         System.out.println("sectionsTest");
         ClassPathResource pdfFileResource = new ClassPathResource("files/Fludioxonil/51 " + "Fludioxonil_RAR_02_Volume_2_2018-02-21.pdf");
 
-        RedactionRequest request = RedactionRequest.builder()
-                .document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
+        AnalyzeRequest request = prepareStorage(pdfFileResource.getInputStream());
+
+        RedactionRequest redactionRequest = RedactionRequest.builder()
+                .projectId(request.getProjectId())
+                .fileId(request.getFileId())
+                .ruleSetId(request.getRuleSetId())
                 .build();
 
-        RedactionResult result = redactionController.sections(request);
+        RedactionResult result = redactionController.sections(redactionRequest);
 
         try (FileOutputStream fileOutputStream = new FileOutputStream("/tmp/Sections.pdf")) {
             fileOutputStream.write(result.getDocument());
@@ -761,11 +849,15 @@ public class RedactionIntegrationTest {
         System.out.println("htmlTablesTest");
         ClassPathResource pdfFileResource = new ClassPathResource("files/Metolachlor/S-Metolachlor_RAR_02_Volume_2_2018-09-06.pdf");
 
-        RedactionRequest request = RedactionRequest.builder()
-                .document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
+        AnalyzeRequest request = prepareStorage(pdfFileResource.getInputStream());
+
+        RedactionRequest redactionRequest = RedactionRequest.builder()
+                .projectId(request.getProjectId())
+                .fileId(request.getFileId())
+                .ruleSetId(request.getRuleSetId())
                 .build();
 
-        RedactionResult result = redactionController.htmlTables(request);
+        RedactionResult result = redactionController.htmlTables(redactionRequest);
 
         try (FileOutputStream fileOutputStream = new FileOutputStream("/tmp/Tables.html")) {
             fileOutputStream.write(result.getDocument());
@@ -779,11 +871,15 @@ public class RedactionIntegrationTest {
         System.out.println("htmlTableRotationTest");
         ClassPathResource pdfFileResource = new ClassPathResource("files/Metolachlor/S-Metolachlor_RAR_02_Volume_2_2018-09-06.pdf");
 
-        RedactionRequest request = RedactionRequest.builder()
-                .document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
+        AnalyzeRequest request = prepareStorage(pdfFileResource.getInputStream());
+
+        RedactionRequest redactionRequest = RedactionRequest.builder()
+                .projectId(request.getProjectId())
+                .fileId(request.getFileId())
+                .ruleSetId(request.getRuleSetId())
                 .build();
 
-        RedactionResult result = redactionController.htmlTables(request);
+        RedactionResult result = redactionController.htmlTables(redactionRequest);
 
         try (FileOutputStream fileOutputStream = new FileOutputStream("/tmp/Tables.html")) {
             fileOutputStream.write(result.getDocument());
@@ -796,20 +892,45 @@ public class RedactionIntegrationTest {
 
         ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Phantom Cells.pdf");
 
-        AnalyzeRequest request = AnalyzeRequest.builder()
-                .ruleSetId(TEST_RULESET_ID)
-                .document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
-                .build();
+        AnalyzeRequest request = prepareStorage(pdfFileResource.getInputStream());
 
-        AnalyzeResult result = redactionController.analyze(request);
+        AnalyzeResult result = reanalyzeService.analyze(request);
 
-        result.getRedactionLog().getRedactionLogEntry().forEach(entry -> {
+        var redactionLog = redactionStorageService.getRedactionLog(TEST_PROJECT_ID, TEST_FILE_ID);
+
+        redactionLog.getRedactionLogEntry().forEach(entry -> {
             if (!entry.isHint()) {
                 assertThat(entry.getReason()).isEqualTo("Not redacted because row is not a vertebrate study");
             }
         });
     }
 
+    @SneakyThrows
+    private AnalyzeRequest prepareStorage(String file) {
+        ClassPathResource pdfFileResource = new ClassPathResource(file);
+
+        return prepareStorage(pdfFileResource.getInputStream());
+    }
+
+
+    @SneakyThrows
+    private AnalyzeRequest prepareStorage(InputStream stream) {
+
+        AnalyzeRequest request = AnalyzeRequest.builder()
+                .ruleSetId(TEST_RULESET_ID)
+                .projectId(TEST_PROJECT_ID)
+                .fileId(TEST_FILE_ID)
+                .lastProcessed(OffsetDateTime.now())
+                .build();
+
+        var bytes = IOUtils.toByteArray(stream);
+
+        storageService.storeObject(RedactionStorageService.StorageIdUtils.getStorageId(TEST_PROJECT_ID, TEST_FILE_ID, FileType.ORIGIN), bytes);
+
+        return request;
+
+    }
+
 
     @Test
     public void sponsorCompanyTest() throws IOException {
@@ -817,17 +938,14 @@ public class RedactionIntegrationTest {
         long start = System.currentTimeMillis();
         ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/sponsor_companies.pdf");
 
-        AnalyzeRequest request = AnalyzeRequest.builder()
-                .ruleSetId(TEST_RULESET_ID)
-                .document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
-                .build();
 
-        AnalyzeResult result = redactionController.analyze(request);
+        AnalyzeRequest request = prepareStorage(pdfFileResource.getInputStream());
+
+        AnalyzeResult result = reanalyzeService.analyze(request);
 
         AnnotateResponse annotateResponse = redactionController.annotate(AnnotateRequest.builder()
-                .document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
-                .redactionLog(result.getRedactionLog())
-                .sectionGrid(result.getSectionGrid())
+                .projectId(TEST_PROJECT_ID)
+                .fileId(TEST_FILE_ID)
                 .build());
 
         try (FileOutputStream fileOutputStream = new FileOutputStream("/tmp/Annotated.pdf")) {
@@ -858,4 +976,4 @@ public class RedactionIntegrationTest {
         }
     }
 
-}
+}

redaction-service-v1/redaction-service-server-v1/src/test/java/com/iqser/red/service/redaction/v1/server/redaction/service/EntityRedactionServiceTest.java

@@ -1,12 +1,10 @@
 package com.iqser.red.service.redaction.v1.server.redaction.service;
 
-import com.iqser.red.service.configuration.v1.api.model.Colors;
-import com.iqser.red.service.configuration.v1.api.model.DictionaryEntry;
-import com.iqser.red.service.configuration.v1.api.model.DictionaryResponse;
-import com.iqser.red.service.configuration.v1.api.model.RulesResponse;
-import com.iqser.red.service.configuration.v1.api.model.TypeResponse;
-import com.iqser.red.service.configuration.v1.api.model.TypeResult;
-import com.iqser.red.service.redaction.v1.model.RedactionRequest;
+import com.amazonaws.services.s3.AmazonS3;
+import com.iqser.red.service.configuration.v1.api.model.*;
+import com.iqser.red.service.configuration.v1.api.resource.DictionaryResource;
+import com.iqser.red.service.redaction.v1.server.Application;
+import com.iqser.red.service.redaction.v1.server.FileSystemBackedStorageService;
 import com.iqser.red.service.redaction.v1.server.classification.model.Document;
 import com.iqser.red.service.redaction.v1.server.client.DictionaryClient;
 import com.iqser.red.service.redaction.v1.server.client.RulesClient;
@@ -14,8 +12,7 @@ import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
 import com.iqser.red.service.redaction.v1.server.redaction.utils.EntitySearchUtils;
 import com.iqser.red.service.redaction.v1.server.redaction.utils.ResourceLoader;
 import com.iqser.red.service.redaction.v1.server.segmentation.PdfSegmentationService;
-import org.apache.commons.io.IOUtils;
-import org.apache.pdfbox.pdmodel.PDDocument;
+import com.iqser.red.storage.commons.service.StorageService;
 import org.junit.Before;
 import org.junit.Ignore;
 import org.junit.Test;
@@ -26,10 +23,14 @@ import org.kie.api.builder.KieFileSystem;
 import org.kie.api.builder.KieModule;
 import org.kie.api.runtime.KieContainer;
 import org.springframework.beans.factory.annotation.Autowired;
+import org.springframework.boot.autoconfigure.EnableAutoConfiguration;
+import org.springframework.boot.autoconfigure.amqp.RabbitAutoConfiguration;
 import org.springframework.boot.test.context.SpringBootTest;
-import org.springframework.boot.test.context.TestConfiguration;
 import org.springframework.boot.test.mock.mockito.MockBean;
 import org.springframework.context.annotation.Bean;
+import org.springframework.context.annotation.Configuration;
+import org.springframework.context.annotation.Import;
+import org.springframework.context.annotation.Primary;
 import org.springframework.core.io.ClassPathResource;
 import org.springframework.test.context.junit4.SpringRunner;
 
@@ -40,21 +41,15 @@ import java.io.InputStream;
 import java.io.InputStreamReader;
 import java.net.URL;
 import java.nio.charset.StandardCharsets;
-import java.util.ArrayList;
-import java.util.Arrays;
-import java.util.Collections;
-import java.util.HashSet;
-import java.util.List;
-import java.util.Set;
+import java.util.*;
 import java.util.concurrent.atomic.AtomicLong;
-import java.util.regex.Matcher;
-import java.util.regex.Pattern;
 
 import static org.assertj.core.api.Assertions.assertThat;
 import static org.mockito.Mockito.when;
 
-@SpringBootTest
 @RunWith(SpringRunner.class)
+@SpringBootTest(classes = Application.class, webEnvironment = SpringBootTest.WebEnvironment.RANDOM_PORT)
+@Import(EntityRedactionServiceTest.RedactionIntegrationTestConfiguration.class)
 public class EntityRedactionServiceTest {
 
     private static final String DEFAULT_RULES = loadFromClassPath("drools/rules.drl");
@@ -80,9 +75,13 @@ public class EntityRedactionServiceTest {
     @Autowired
     private DroolsExecutionService droolsExecutionService;
 
+    @MockBean
+    private AmazonS3 amazonS3;
+
     private final static String TEST_RULESET_ID = "123";
 
-    @TestConfiguration
+    @Configuration
+    @EnableAutoConfiguration(exclude = {RabbitAutoConfiguration.class})
     public static class RedactionIntegrationTestConfiguration {
 
         @Bean
@@ -101,6 +100,13 @@ public class EntityRedactionServiceTest {
             return kieServices.newKieContainer(kieModule.getReleaseId());
         }
 
+
+        @Bean
+        @Primary
+        public StorageService inmemoryStorage() {
+            return new FileSystemBackedStorageService();
+        }
+
     }
 
 
@@ -108,8 +114,8 @@ public class EntityRedactionServiceTest {
     public void testNestedEntitiesRemoval() {
 
         Set<Entity> entities = new HashSet<>();
-        Entity nested = new Entity("nested", "fake type", 10, 16, "fake headline", 0, false);
-        Entity nesting = new Entity("nesting nested", "fake type", 2, 16, "fake headline", 0, false);
+        Entity nested = new Entity("nested", "fake type", 10, 16, "fake headline", 0, false, false);
+        Entity nesting = new Entity("nesting nested", "fake type", 2, 16, "fake headline", 0, false, false);
         entities.add(nested);
         entities.add(nesting);
         EntitySearchUtils.removeEntitiesContainedInLarger(entities);
@@ -125,31 +131,25 @@ public class EntityRedactionServiceTest {
 
         ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Single Table.pdf");
 
-        RedactionRequest redactionRequest = RedactionRequest.builder()
-                .document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
-                .build();
-
         DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
                 .entries(toDictionaryEntry(Arrays.asList("Casey, H.W.", "O’Loughlin,  C.K.", "Salamon, C.M.", "Smith, S.H.")))
                 .build();
-        when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
-        when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
+        when(dictionaryClient.getVersion(TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
+        when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(dictionaryResponse);
         DictionaryResponse addressResponse = DictionaryResponse.builder()
                 .entries(toDictionaryEntry(Collections.singletonList("Toxigenics, Inc., Decatur, IL 62526, USA")))
                 .build();
-        when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID)).thenReturn(addressResponse);
+        when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(addressResponse);
 
         DictionaryResponse sponsorResponse = DictionaryResponse.builder()
                 .entries(Collections.emptyList())
                 .build();
-        when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_RULESET_ID)).thenReturn(sponsorResponse);
+        when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(sponsorResponse);
 
-        try (PDDocument pdDocument = PDDocument.load(new ByteArrayInputStream(redactionRequest.getDocument()))) {
-            Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
-            entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null);
-            assertThat(classifiedDoc.getEntities()).hasSize(1); // one page
-            assertThat(classifiedDoc.getEntities().get(1)).hasSize(7);// 3 author cells, 1 address, 1 Y and 2 N entities
-        }
+        Document classifiedDoc = pdfSegmentationService.parseDocument(pdfFileResource.getInputStream());
+        entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null, "dossierId");
+        assertThat(classifiedDoc.getEntities()).hasSize(1); // one page
+        assertThat(classifiedDoc.getEntities().get(1)).hasSize(7);// 3 author cells, 1 address, 1 Y and 2 N entities
     }
 
 
@@ -158,30 +158,24 @@ public class EntityRedactionServiceTest {
 
         ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/nested_redaction.pdf");
 
-        RedactionRequest redactionRequest = RedactionRequest.builder()
-                .document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
-                .build();
-
         DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
                 .entries(toDictionaryEntry(Arrays.asList("Casey, H.W.", "O’Loughlin,  C.K.", "Salamon, C.M.", "Smith, S.H.")))
                 .build();
-        when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
-        when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
+        when(dictionaryClient.getVersion(TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
+        when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(dictionaryResponse);
         DictionaryResponse addressResponse = DictionaryResponse.builder()
                 .entries(toDictionaryEntry(Collections.singletonList("Toxigenics, Inc., Decatur, IL 62526, USA")))
                 .build();
-        when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID)).thenReturn(addressResponse);
+        when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(addressResponse);
         DictionaryResponse sponsorResponse = DictionaryResponse.builder()
                 .entries(Collections.emptyList())
                 .build();
-        when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_RULESET_ID)).thenReturn(sponsorResponse);
+        when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(sponsorResponse);
 
-        try (PDDocument pdDocument = PDDocument.load(new ByteArrayInputStream(redactionRequest.getDocument()))) {
-            Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
-            entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null);
-            assertThat(classifiedDoc.getEntities()).hasSize(1); // one page
-            assertThat(classifiedDoc.getEntities().get(1)).hasSize(7);// 3 author cells, 1 address, 1 Y and 2 N entities
-        }
+        Document classifiedDoc = pdfSegmentationService.parseDocument(pdfFileResource.getInputStream());
+        entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null, "dossierId");
+        assertThat(classifiedDoc.getEntities()).hasSize(1); // one page
+        assertThat(classifiedDoc.getEntities().get(1)).hasSize(7);// 3 author cells, 1 address, 1 Y and 2 N entities
     }
 
 
@@ -190,64 +184,58 @@ public class EntityRedactionServiceTest {
 
         ClassPathResource pdfFileResource = new ClassPathResource("files/Cyprodinil/40 Cyprodinil - EU AIR3 - LCA Section 1" +
                 " Supplement - Identity of the active substance - Reference list.pdf");
-        when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
+        when(dictionaryClient.getVersion(TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
         DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
                 .entries(toDictionaryEntry(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_author.txt"))))
                 .build();
-        when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
+        when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(dictionaryResponse);
         DictionaryResponse addressResponse = DictionaryResponse.builder()
                 .entries(toDictionaryEntry(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_address.txt"))))
                 .build();
-        when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID)).thenReturn(addressResponse);
+        when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(addressResponse);
         DictionaryResponse sponsorResponse = DictionaryResponse.builder()
                 .entries(Collections.emptyList())
                 .build();
-        when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_RULESET_ID)).thenReturn(sponsorResponse);
-        try (PDDocument pdDocument = PDDocument.load(pdfFileResource.getInputStream())) {
-            Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
-            entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null);
-            assertThat(classifiedDoc.getEntities()
-                    .entrySet()
-                    .stream()
-                    .noneMatch(entry -> entry.getValue().stream().anyMatch(e -> e.getMatchedRule() == 9))).isTrue();
-        }
+        when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(sponsorResponse);
+        Document classifiedDoc = pdfSegmentationService.parseDocument(pdfFileResource.getInputStream());
+        entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null, "dossierId");
+        assertThat(classifiedDoc.getEntities()
+                .entrySet()
+                .stream()
+                .noneMatch(entry -> entry.getValue().stream().anyMatch(e -> e.getMatchedRule() == 9))).isTrue();
         pdfFileResource = new ClassPathResource("files/Compounds/27 A8637C - EU AIR3 - MCP Section 1 - Identity of " +
                 "the plant protection product.pdf");
-        try (PDDocument pdDocument = PDDocument.load(pdfFileResource.getInputStream())) {
-            Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
-            entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null);
-            assertThat(classifiedDoc.getEntities()
-                    .entrySet()
-                    .stream()
-                    .noneMatch(entry -> entry.getValue().stream().anyMatch(e -> e.getMatchedRule() == 9))).isTrue();
-        }
+        classifiedDoc = pdfSegmentationService.parseDocument(pdfFileResource.getInputStream());
+        entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null, "dossierId");
+        assertThat(classifiedDoc.getEntities()
+                .entrySet()
+                .stream()
+                .noneMatch(entry -> entry.getValue().stream().anyMatch(e -> e.getMatchedRule() == 9))).isTrue();
     }
 
     @Test
     public void testFalsePositiveInWrongCell() throws IOException {
 
         ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Row With Ambiguous Redaction.pdf");
-        when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
+        when(dictionaryClient.getVersion(TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
         DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
                 .entries(toDictionaryEntry(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_author.txt"))))
                 .build();
-        when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
+        when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(dictionaryResponse);
         DictionaryResponse addressResponse = DictionaryResponse.builder()
                 .entries(toDictionaryEntry(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_address.txt"))))
                 .build();
-        when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID)).thenReturn(addressResponse);
+        when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(addressResponse);
         DictionaryResponse sponsorResponse = DictionaryResponse.builder()
                 .entries(toDictionaryEntry(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_sponsor.txt"))))
                 .build();
-        when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_RULESET_ID)).thenReturn(sponsorResponse);
-        try (PDDocument pdDocument = PDDocument.load(pdfFileResource.getInputStream())) {
-            Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
-            entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null);
-            assertThat(classifiedDoc.getEntities()).hasSize(1); // one page
-            assertThat(classifiedDoc.getEntities().get(1).stream()
-                    .filter(entity -> entity.getMatchedRule() == 9)
-                    .count()).isEqualTo(10);
-        }
+        when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(sponsorResponse);
+        Document classifiedDoc = pdfSegmentationService.parseDocument(pdfFileResource.getInputStream());
+        entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null, "dossierId");
+        assertThat(classifiedDoc.getEntities()).hasSize(1); // one page
+        assertThat(classifiedDoc.getEntities().get(1).stream()
+                .filter(entity -> entity.getMatchedRule() == 9)
+                .count()).isEqualTo(10);
 
     }
 
@@ -296,27 +284,25 @@ public class EntityRedactionServiceTest {
         droolsExecutionService.updateRules(TEST_RULESET_ID);
 
         ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Applicant Producer Table.pdf");
-        when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
+        when(dictionaryClient.getVersion(TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
         DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
                 .entries(toDictionaryEntry(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_author.txt"))))
                 .build();
-        when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
+        when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(dictionaryResponse);
         DictionaryResponse addressResponse = DictionaryResponse.builder()
                 .entries(toDictionaryEntry(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_address.txt"))))
                 .build();
-        when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID)).thenReturn(addressResponse);
+        when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(addressResponse);
         DictionaryResponse sponsorResponse = DictionaryResponse.builder()
                 .entries(Collections.emptyList())
                 .build();
-        when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_RULESET_ID)).thenReturn(sponsorResponse);
-        try (PDDocument pdDocument = PDDocument.load(pdfFileResource.getInputStream())) {
-            Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
-            entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null);
-            assertThat(classifiedDoc.getEntities()).hasSize(1); // one page
-            assertThat(classifiedDoc.getEntities().get(1).stream()
-                    .filter(entity -> entity.getMatchedRule() == 6)
-                    .count()).isEqualTo(13);
-        }
+        when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(sponsorResponse);
+        Document classifiedDoc = pdfSegmentationService.parseDocument(pdfFileResource.getInputStream());
+        entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null, "dossierId");
+        assertThat(classifiedDoc.getEntities()).hasSize(1); // one page
+        assertThat(classifiedDoc.getEntities().get(1).stream()
+                .filter(entity -> entity.getMatchedRule() == 6)
+                .count()).isEqualTo(13);
 
     }
 
@@ -337,27 +323,25 @@ public class EntityRedactionServiceTest {
         droolsExecutionService.updateRules(TEST_RULESET_ID);
 
         ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/batches_new_line.pdf");
-        when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
+        when(dictionaryClient.getVersion(TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
         DictionaryResponse addressResponse = DictionaryResponse.builder()
                 .entries(Collections.emptyList())
                 .build();
-        when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID)).thenReturn(addressResponse);
+        when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(addressResponse);
         DictionaryResponse authorResponse = DictionaryResponse.builder()
                 .entries(Collections.emptyList())
                 .build();
-        when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(authorResponse);
+        when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(authorResponse);
         DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
                 .entries(toDictionaryEntry(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_sponsor.txt"))))
                 .build();
-        when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
-        try (PDDocument pdDocument = PDDocument.load(pdfFileResource.getInputStream())) {
-            Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
-            entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null);
-            assertThat(classifiedDoc.getEntities()).hasSize(1); // one page
-            assertThat(classifiedDoc.getEntities().get(1).stream()
-                    .filter(entity -> entity.getMatchedRule() == 11)
-                    .count()).isEqualTo(1);
-        }
+        when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(dictionaryResponse);
+        Document classifiedDoc = pdfSegmentationService.parseDocument(pdfFileResource.getInputStream());
+        entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null, "dossierId");
+        assertThat(classifiedDoc.getEntities()).hasSize(1); // one page
+        assertThat(classifiedDoc.getEntities().get(1).stream()
+                .filter(entity -> entity.getMatchedRule() == 11)
+                .count()).isEqualTo(1);
 
     }
 
@@ -371,24 +355,22 @@ public class EntityRedactionServiceTest {
                 .entries(toDictionaryEntry(Arrays.asList("Bissig R.", "Thanei P.")))
                 .build();
 
-        when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
-        when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
+        when(dictionaryClient.getVersion(TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
+        when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(dictionaryResponse);
         DictionaryResponse addressResponse = DictionaryResponse.builder()
                 .entries(toDictionaryEntry(Collections.singletonList("Novartis Crop Protection AG, Basel, Switzerland")))
                 .build();
-        when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID)).thenReturn(addressResponse);
+        when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(addressResponse);
 
         DictionaryResponse sponsorResponse = DictionaryResponse.builder()
                 .entries(Collections.emptyList())
                 .build();
-        when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_RULESET_ID)).thenReturn(sponsorResponse);
-        try (PDDocument pdDocument = PDDocument.load(pdfFileResource.getInputStream())) {
-            Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
-            entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null);
-            assertThat(classifiedDoc.getEntities()).hasSize(2); // two pages
-            assertThat(classifiedDoc.getEntities().get(1).stream().filter(entity -> entity.getMatchedRule() == 9).count()).isEqualTo(8);
-            assertThat(classifiedDoc.getEntities().get(2).stream().filter(entity -> entity.getMatchedRule() == 9).count()).isEqualTo(5); // 2 names, 1 address, 2 Y
-        }
+        when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(sponsorResponse);
+        Document classifiedDoc = pdfSegmentationService.parseDocument(pdfFileResource.getInputStream());
+        entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null, "dossierId");
+        assertThat(classifiedDoc.getEntities()).hasSize(2); // two pages
+        assertThat(classifiedDoc.getEntities().get(1).stream().filter(entity -> entity.getMatchedRule() == 9).count()).isEqualTo(8);
+        assertThat(classifiedDoc.getEntities().get(2).stream().filter(entity -> entity.getMatchedRule() == 9).count()).isEqualTo(5); // 2 names, 1 address, 2 Y
 
         pdfFileResource = new ClassPathResource("files/Minimal Examples/Header Propagation2.pdf");
 
@@ -396,20 +378,18 @@ public class EntityRedactionServiceTest {
                 .entries(toDictionaryEntry(Arrays.asList("Tribolet, R.", "Muir, G.", "Kühne-Thu, H.", "Close, C.")))
                 .build();
 
-        when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
-        when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
+        when(dictionaryClient.getVersion(TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
+        when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(dictionaryResponse);
         addressResponse = DictionaryResponse.builder()
                 .entries(toDictionaryEntry(Collections.singletonList("Novartis Crop Protection AG, Basel, Switzerland")))
                 .build();
-        when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID)).thenReturn(addressResponse);
+        when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(addressResponse);
 
-        try (PDDocument pdDocument = PDDocument.load(pdfFileResource.getInputStream())) {
-            Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
-            entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null);
-            assertThat(classifiedDoc.getEntities()).hasSize(1); // one page
-            assertThat(classifiedDoc.getEntities().get(1).stream().filter(entity -> entity.getMatchedRule() == 9).count()).isEqualTo(3);
-            assertThat(classifiedDoc.getEntities().get(1).stream().filter(entity -> entity.getMatchedRule() == 8).count()).isEqualTo(9);
-        }
+        classifiedDoc = pdfSegmentationService.parseDocument(pdfFileResource.getInputStream());
+        entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null, "dossierId");
+        assertThat(classifiedDoc.getEntities()).hasSize(1); // one page
+        assertThat(classifiedDoc.getEntities().get(1).stream().filter(entity -> entity.getMatchedRule() == 9).count()).isEqualTo(3);
+        assertThat(classifiedDoc.getEntities().get(1).stream().filter(entity -> entity.getMatchedRule() == 8).count()).isEqualTo(9);
     }
 
 
@@ -423,23 +403,21 @@ public class EntityRedactionServiceTest {
                 .entries(toDictionaryEntry(Collections.singletonList("Aldershof S.")))
                 .build();
 
-        when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
-        when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
+        when(dictionaryClient.getVersion(TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
+        when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(dictionaryResponse);
         DictionaryResponse addressResponse = DictionaryResponse.builder()
                 .entries(toDictionaryEntry(Collections.singletonList("Novartis Crop Protection AG, Basel, Switzerland")))
                 .build();
-        when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID)).thenReturn(addressResponse);
+        when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(addressResponse);
 
         DictionaryResponse sponsorResponse = DictionaryResponse.builder()
                 .entries(Collections.emptyList())
                 .build();
-        when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_RULESET_ID)).thenReturn(sponsorResponse);
-        try (PDDocument pdDocument = PDDocument.load(pdfFileResource.getInputStream())) {
-            Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
-            entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null);
-            assertThat(classifiedDoc.getEntities()).hasSize(1); // one page
-            assertThat(classifiedDoc.getEntities().get(1).stream().filter(entity -> entity.getMatchedRule() == 8).count()).isEqualTo(6);
-        }
+        when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(sponsorResponse);
+        Document classifiedDoc = pdfSegmentationService.parseDocument(pdfFileResource.getInputStream());
+        entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null, "dossierId");
+        assertThat(classifiedDoc.getEntities()).hasSize(1); // one page
+        assertThat(classifiedDoc.getEntities().get(1).stream().filter(entity -> entity.getMatchedRule() == 8).count()).isEqualTo(6);
     }
 
 
@@ -476,19 +454,19 @@ public class EntityRedactionServiceTest {
                         TypeResult.builder().ruleSetId(TEST_RULESET_ID).type(ADDRESS_CODE).hexColor("#ff00ff").build(),
                         TypeResult.builder().ruleSetId(TEST_RULESET_ID).type(SPONSOR_CODE).hexColor("#00ffff").build()))
                 .build();
-        when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
-        when(dictionaryClient.getAllTypes(TEST_RULESET_ID)).thenReturn(typeResponse);
+        when(dictionaryClient.getVersion(TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
+        when(dictionaryClient.getAllTypes(TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(typeResponse);
 
         // Default empty return to prevent NPEs
         DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
                 .build();
-        when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
+        when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(dictionaryResponse);
         DictionaryResponse addressResponse = DictionaryResponse.builder()
                 .build();
-        when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID)).thenReturn(addressResponse);
+        when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(addressResponse);
         DictionaryResponse sponsorResponse = DictionaryResponse.builder()
                 .build();
-        when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_RULESET_ID)).thenReturn(sponsorResponse);
+        when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_RULESET_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(sponsorResponse);
 
         Colors colors = new Colors();
         colors.setDefaultColor("#acfc00");
@@ -518,7 +496,7 @@ public class EntityRedactionServiceTest {
         }
     }
 
-    private List<DictionaryEntry> toDictionaryEntry(List<String> entries){
+    private List<DictionaryEntry> toDictionaryEntry(List<String> entries) {
         List<DictionaryEntry> dictionaryEntries = new ArrayList<>();
         entries.forEach(entry -> {
             dictionaryEntries.add(new DictionaryEntry(entry, 1L, false));
@@ -526,4 +504,4 @@ public class EntityRedactionServiceTest {
         return dictionaryEntries;
     }
 
-}
+}

redaction-service-v1/redaction-service-server-v1/src/test/java/com/iqser/red/service/redaction/v1/server/segmentation/PdfSegmentationServiceTest.java

@@ -1,7 +1,31 @@
 package com.iqser.red.service.redaction.v1.server.segmentation;
 
-import static org.assertj.core.api.Assertions.assertThat;
+import com.amazonaws.services.s3.AmazonS3;
+import com.iqser.red.service.redaction.v1.server.Application;
+import com.iqser.red.service.redaction.v1.server.classification.model.Document;
+import com.iqser.red.service.redaction.v1.server.classification.model.Page;
+import com.iqser.red.service.redaction.v1.server.classification.service.BlockificationService;
+import com.iqser.red.service.redaction.v1.server.redaction.model.PdfImage;
+import com.iqser.red.service.redaction.v1.server.tableextraction.model.Cell;
+import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
+import com.iqser.red.service.redaction.v1.server.tableextraction.service.RulingCleaningService;
+import com.iqser.red.service.redaction.v1.server.tableextraction.service.TableExtractionService;
+import org.junit.Ignore;
+import org.junit.Test;
+import org.junit.runner.RunWith;
+import org.kie.api.runtime.KieContainer;
+import org.springframework.amqp.rabbit.core.RabbitTemplate;
+import org.springframework.beans.factory.annotation.Autowired;
+import org.springframework.boot.autoconfigure.EnableAutoConfiguration;
+import org.springframework.boot.autoconfigure.amqp.RabbitAutoConfiguration;
+import org.springframework.boot.test.context.SpringBootTest;
+import org.springframework.boot.test.mock.mockito.MockBean;
+import org.springframework.context.annotation.Configuration;
+import org.springframework.context.annotation.Import;
+import org.springframework.core.io.ClassPathResource;
+import org.springframework.test.context.junit4.SpringRunner;
 
+import javax.imageio.ImageIO;
 import java.io.ByteArrayOutputStream;
 import java.io.FileOutputStream;
 import java.io.IOException;
@@ -9,31 +33,12 @@ import java.util.Collections;
 import java.util.List;
 import java.util.stream.Collectors;
 
-import javax.imageio.ImageIO;
+import static org.assertj.core.api.Assertions.assertThat;
 
-import org.apache.pdfbox.pdmodel.PDDocument;
-import org.junit.Ignore;
-import org.junit.Test;
-import org.junit.runner.RunWith;
-import org.kie.api.runtime.KieContainer;
-import org.springframework.beans.factory.annotation.Autowired;
-import org.springframework.boot.test.context.SpringBootTest;
-import org.springframework.boot.test.mock.mockito.MockBean;
-import org.springframework.core.io.ClassPathResource;
-import org.springframework.test.context.junit4.SpringRunner;
 
-import com.iqser.red.service.redaction.v1.server.classification.model.Document;
-import com.iqser.red.service.redaction.v1.server.classification.model.Page;
-import com.iqser.red.service.redaction.v1.server.classification.service.BlockificationService;
-import com.iqser.red.service.redaction.v1.server.redaction.model.Image;
-import com.iqser.red.service.redaction.v1.server.redaction.model.PdfImage;
-import com.iqser.red.service.redaction.v1.server.tableextraction.model.Cell;
-import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
-import com.iqser.red.service.redaction.v1.server.tableextraction.service.RulingCleaningService;
-import com.iqser.red.service.redaction.v1.server.tableextraction.service.TableExtractionService;
-
-@SpringBootTest
 @RunWith(SpringRunner.class)
+@SpringBootTest(classes = Application.class, webEnvironment = SpringBootTest.WebEnvironment.RANDOM_PORT)
+@Import(PdfSegmentationServiceTest.TestConfiguration.class)
 public class PdfSegmentationServiceTest {
 
     @Autowired
@@ -51,6 +56,28 @@ public class PdfSegmentationServiceTest {
     @MockBean
     private KieContainer kieContainer;
 
+    @MockBean
+    private AmazonS3 amazonS3;
+
+    @MockBean
+    private RabbitTemplate rabbitTemplate;
+
+    @Configuration
+    @EnableAutoConfiguration(exclude = { RabbitAutoConfiguration.class})
+    public static class TestConfiguration {
+
+    }
+
+    @Test
+    public void testMergeImages() throws IOException {
+
+        ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/270Rotated.pdf");
+
+        Document document = pdfSegmentationService.parseDocument(pdfFileResource.getInputStream());
+        assertThat(document.getPages().get(0).getImages().size()).isEqualTo(1);
+        assertThat(document.getPages().get(1).getImages().size()).isEqualTo(0);
+
+    }
 
     @Test
     @Ignore
@@ -58,61 +85,78 @@ public class PdfSegmentationServiceTest {
 
         ClassPathResource pdfFileResource = new ClassPathResource("files/new/Single Study - Oral (Gavage) Mouse.pdf");
 
-        try (PDDocument pdDocument = PDDocument.load(pdfFileResource.getInputStream())) {
-            Document document = pdfSegmentationService.parseDocument(pdDocument);
-            int i = 0;
-            for (Page page : document.getPages()) {
-                for (PdfImage image : page.getImages()) {
-                    try (ByteArrayOutputStream baos = new ByteArrayOutputStream()) {
-                        ImageIO.write(image.getImage(), "png", baos);
-                        try (FileOutputStream fileOutputStream = new FileOutputStream("/tmp/Image " + i + ".png")) {
-                            fileOutputStream.write(baos.toByteArray());
-                        }
+        Document document = pdfSegmentationService.parseDocument(pdfFileResource.getInputStream());
+        int i = 0;
+        for (Page page : document.getPages()) {
+            for (PdfImage image : page.getImages()) {
+                try (ByteArrayOutputStream baos = new ByteArrayOutputStream()) {
+                    ImageIO.write(image.getImage(), "png", baos);
+                    try (FileOutputStream fileOutputStream = new FileOutputStream("/tmp/Image " + i + ".png")) {
+                        fileOutputStream.write(baos.toByteArray());
                     }
-                    i++;
                 }
+                i++;
             }
         }
     }
 
 
+    @Test
+    public void testPDFSegmentationWithComplexTable() throws IOException {
+
+        ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Spanning Cells.pdf");
+
+        Document document = pdfSegmentationService.parseDocument(pdfFileResource.getInputStream());
+        assertThat(document.getParagraphs()
+                .stream()
+                .flatMap(paragraph -> paragraph.getTables().stream())
+                .collect(Collectors.toList())).isNotEmpty();
+        Table table = document.getParagraphs()
+                .stream()
+                .flatMap(paragraph -> paragraph.getTables().stream())
+                .collect(Collectors.toList())
+                .get(0);
+        assertThat(table.getColCount()).isEqualTo(6);
+        assertThat(table.getRowCount()).isEqualTo(13);
+        assertThat(table.getRows().stream().mapToInt(List::size).sum()).isEqualTo(6 * 13);
+    }
+
+
     @Test
     public void testTableExtraction() throws IOException {
 
         ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Merge Table.pdf");
 
-        try (PDDocument pdDocument = PDDocument.load(pdfFileResource.getInputStream())) {
-            Document document = pdfSegmentationService.parseDocument(pdDocument);
-            assertThat(document.getParagraphs()
-                    .stream()
-                    .flatMap(paragraph -> paragraph.getTables().stream())
-                    .collect(Collectors.toList())).isNotEmpty();
-            Table firstTable = document.getParagraphs()
-                    .stream()
-                    .flatMap(paragraph -> paragraph.getTables().stream())
-                    .collect(Collectors.toList())
-                    .get(0);
-            assertThat(firstTable.getColCount()).isEqualTo(8);
-            assertThat(firstTable.getRowCount()).isEqualTo(1);
-            Table secondTable = document.getParagraphs()
-                    .stream()
-                    .flatMap(paragraph -> paragraph.getTables().stream())
-                    .collect(Collectors.toList())
-                    .get(1);
-            assertThat(secondTable.getColCount()).isEqualTo(8);
-            assertThat(secondTable.getRowCount()).isEqualTo(2);
-            List<List<Cell>> firstTableHeaderCells = firstTable.getRows()
-                    .get(0)
-                    .stream()
-                    .map(Collections::singletonList)
-                    .collect(Collectors.toList());
-            assertThat(secondTable.getRows()
-                    .stream()
-                    .allMatch(row -> row.stream()
-                            .map(Cell::getHeaderCells)
-                            .collect(Collectors.toList())
-                            .equals(firstTableHeaderCells))).isTrue();
-        }
+        Document document = pdfSegmentationService.parseDocument(pdfFileResource.getInputStream());
+        assertThat(document.getParagraphs()
+                .stream()
+                .flatMap(paragraph -> paragraph.getTables().stream())
+                .collect(Collectors.toList())).isNotEmpty();
+        Table firstTable = document.getParagraphs()
+                .stream()
+                .flatMap(paragraph -> paragraph.getTables().stream())
+                .collect(Collectors.toList())
+                .get(0);
+        assertThat(firstTable.getColCount()).isEqualTo(8);
+        assertThat(firstTable.getRowCount()).isEqualTo(1);
+        Table secondTable = document.getParagraphs()
+                .stream()
+                .flatMap(paragraph -> paragraph.getTables().stream())
+                .collect(Collectors.toList())
+                .get(1);
+        assertThat(secondTable.getColCount()).isEqualTo(8);
+        assertThat(secondTable.getRowCount()).isEqualTo(2);
+        List<List<Cell>> firstTableHeaderCells = firstTable.getRows()
+                .get(0)
+                .stream()
+                .map(Collections::singletonList)
+                .collect(Collectors.toList());
+        assertThat(secondTable.getRows()
+                .stream()
+                .allMatch(row -> row.stream()
+                        .map(Cell::getHeaderCells)
+                        .collect(Collectors.toList())
+                        .equals(firstTableHeaderCells))).isTrue();
     }
 
 
@@ -121,38 +165,36 @@ public class PdfSegmentationServiceTest {
 
         ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Merge Multi Page Table.pdf");
 
-        try (PDDocument pdDocument = PDDocument.load(pdfFileResource.getInputStream())) {
-            Document document = pdfSegmentationService.parseDocument(pdDocument);
-            assertThat(document.getParagraphs()
-                    .stream()
-                    .flatMap(paragraph -> paragraph.getTables().stream())
-                    .collect(Collectors.toList())).isNotEmpty();
-            Table firstTable = document.getParagraphs()
-                    .stream()
-                    .flatMap(paragraph -> paragraph.getTables().stream())
-                    .collect(Collectors.toList())
-                    .get(0);
-            assertThat(firstTable.getColCount()).isEqualTo(9);
-            assertThat(firstTable.getRowCount()).isEqualTo(5);
-            Table secondTable = document.getParagraphs()
-                    .stream()
-                    .flatMap(paragraph -> paragraph.getTables().stream())
-                    .collect(Collectors.toList())
-                    .get(1);
-            assertThat(secondTable.getColCount()).isEqualTo(9);
-            assertThat(secondTable.getRowCount()).isEqualTo(6);
-            List<List<Cell>> firstTableHeaderCells = firstTable.getRows()
-                    .get(firstTable.getRowCount() - 1)
-                    .stream()
-                    .map(Cell::getHeaderCells)
-                    .collect(Collectors.toList());
-            assertThat(secondTable.getRows()
-                    .stream()
-                    .allMatch(row -> row.stream()
-                            .map(Cell::getHeaderCells)
-                            .collect(Collectors.toList())
-                            .equals(firstTableHeaderCells))).isTrue();
-        }
+        Document document = pdfSegmentationService.parseDocument(pdfFileResource.getInputStream());
+        assertThat(document.getParagraphs()
+                .stream()
+                .flatMap(paragraph -> paragraph.getTables().stream())
+                .collect(Collectors.toList())).isNotEmpty();
+        Table firstTable = document.getParagraphs()
+                .stream()
+                .flatMap(paragraph -> paragraph.getTables().stream())
+                .collect(Collectors.toList())
+                .get(0);
+        assertThat(firstTable.getColCount()).isEqualTo(9);
+        assertThat(firstTable.getRowCount()).isEqualTo(5);
+        Table secondTable = document.getParagraphs()
+                .stream()
+                .flatMap(paragraph -> paragraph.getTables().stream())
+                .collect(Collectors.toList())
+                .get(1);
+        assertThat(secondTable.getColCount()).isEqualTo(9);
+        assertThat(secondTable.getRowCount()).isEqualTo(6);
+        List<List<Cell>> firstTableHeaderCells = firstTable.getRows()
+                .get(firstTable.getRowCount() - 1)
+                .stream()
+                .map(Cell::getHeaderCells)
+                .collect(Collectors.toList());
+        assertThat(secondTable.getRows()
+                .stream()
+                .allMatch(row -> row.stream()
+                        .map(Cell::getHeaderCells)
+                        .collect(Collectors.toList())
+                        .equals(firstTableHeaderCells))).isTrue();
     }
 
 
@@ -161,38 +203,36 @@ public class PdfSegmentationServiceTest {
 
         ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Rotated Table Headers.pdf");
 
-        try (PDDocument pdDocument = PDDocument.load(pdfFileResource.getInputStream())) {
-            Document document = pdfSegmentationService.parseDocument(pdDocument);
-            assertThat(document.getParagraphs()
-                    .stream()
-                    .flatMap(paragraph -> paragraph.getTables().stream())
-                    .collect(Collectors.toList())).isNotEmpty();
-            Table firstTable = document.getParagraphs()
-                    .stream()
-                    .flatMap(paragraph -> paragraph.getTables().stream())
-                    .collect(Collectors.toList())
-                    .get(0);
-            assertThat(firstTable.getColCount()).isEqualTo(8);
-            assertThat(firstTable.getRowCount()).isEqualTo(1);
-            Table secondTable = document.getParagraphs()
-                    .stream()
-                    .flatMap(paragraph -> paragraph.getTables().stream())
-                    .collect(Collectors.toList())
-                    .get(1);
-            assertThat(secondTable.getColCount()).isEqualTo(8);
-            assertThat(secondTable.getRowCount()).isEqualTo(6);
-            List<List<Cell>> firstTableHeaderCells = firstTable.getRows()
-                    .get(0)
-                    .stream()
-                    .map(Collections::singletonList)
-                    .collect(Collectors.toList());
-            assertThat(secondTable.getRows()
-                    .stream()
-                    .allMatch(row -> row.stream()
-                            .map(Cell::getHeaderCells)
-                            .collect(Collectors.toList())
-                            .equals(firstTableHeaderCells))).isTrue();
-        }
+        Document document = pdfSegmentationService.parseDocument(pdfFileResource.getInputStream());
+        assertThat(document.getParagraphs()
+                .stream()
+                .flatMap(paragraph -> paragraph.getTables().stream())
+                .collect(Collectors.toList())).isNotEmpty();
+        Table firstTable = document.getParagraphs()
+                .stream()
+                .flatMap(paragraph -> paragraph.getTables().stream())
+                .collect(Collectors.toList())
+                .get(0);
+        assertThat(firstTable.getColCount()).isEqualTo(8);
+        assertThat(firstTable.getRowCount()).isEqualTo(1);
+        Table secondTable = document.getParagraphs()
+                .stream()
+                .flatMap(paragraph -> paragraph.getTables().stream())
+                .collect(Collectors.toList())
+                .get(1);
+        assertThat(secondTable.getColCount()).isEqualTo(8);
+        assertThat(secondTable.getRowCount()).isEqualTo(6);
+        List<List<Cell>> firstTableHeaderCells = firstTable.getRows()
+                .get(0)
+                .stream()
+                .map(Collections::singletonList)
+                .collect(Collectors.toList());
+        assertThat(secondTable.getRows()
+                .stream()
+                .allMatch(row -> row.stream()
+                        .map(Cell::getHeaderCells)
+                        .collect(Collectors.toList())
+                        .equals(firstTableHeaderCells))).isTrue();
     }
 
 }

redaction-service-v1/redaction-service-server-v1/src/test/resources/application.yml

@@ -1,5 +1,6 @@
 configuration-service.url: "http://configuration-service-v1:8080"
 image-service.url: "http://image-service-v1:8080"
+file-management-service.url: "http://file-management-service-v1:8080"
 
 ribbon:
   ConnectTimeout: 600000

redaction-service-v1/redaction-service-server-v1/src/test/resources/dictionaries/dossier_redactions.txt

@@ -0,0 +1 @@
+Difenoconazole