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RED-211, RED-215 Added dictionaries and rules for testing.

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This commit is contained in:
deiflaender 2020-07-31 16:21:49 +02:00
parent cd07dc6a44
commit e2895a1c7a
8 changed files with 77 additions and 21 deletions
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26
redaction-service-v1/redaction-service-server-v1/src/test/java/com/iqser/red/service/redaction/v1/server/RedactionIntegrationTest.java
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@ -19,7 +19,6 @@ import java.util.stream.Collectors;
import org.apache.commons.io.IOUtils;
import org.junit.Before;
import org.junit.Ignore;
import org.junit.Test;
import org.junit.runner.RunWith;
import org.kie.api.KieServices;
@ -48,7 +47,6 @@ import com.iqser.red.service.redaction.v1.server.controller.RedactionController;
import com.iqser.red.service.redaction.v1.server.redaction.utils.ResourceLoader;
import com.iqser.red.service.redaction.v1.server.redaction.utils.TextNormalizationUtilities;
@Ignore
@RunWith(SpringRunner.class)
@SpringBootTest(webEnvironment = DEFINED_PORT)
public class RedactionIntegrationTest {
@ -58,6 +56,8 @@ public class RedactionIntegrationTest {
private static final String ADDRESS_CODE = "address";
private static final String NAME_CODE = "name";
private static final String NO_REDACTION_INDICATOR = "no_redaction_indicator";
private static final String REDACTION_INDICATOR = "redaction_indicator";
private static final String HINT_ONLY = "hint_only";
@Autowired
private RedactionController redactionController;
@ -109,6 +109,8 @@ public class RedactionIntegrationTest {
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE)).thenReturn(getDictionaryResponse(ADDRESS_CODE));
when(dictionaryClient.getDictionaryForType(NAME_CODE)).thenReturn(getDictionaryResponse(NAME_CODE));
when(dictionaryClient.getDictionaryForType(NO_REDACTION_INDICATOR)).thenReturn(getDictionaryResponse(NO_REDACTION_INDICATOR));
when(dictionaryClient.getDictionaryForType(REDACTION_INDICATOR)).thenReturn(getDictionaryResponse(REDACTION_INDICATOR));
when(dictionaryClient.getDictionaryForType(HINT_ONLY)).thenReturn(getDictionaryResponse(HINT_ONLY));
when(dictionaryClient.getDefaultColor()).thenReturn(new DefaultColor(new float[]{1f, 0.502f, 0f}));
}
@ -131,7 +133,17 @@ public class RedactionIntegrationTest {
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(NO_REDACTION_INDICATOR, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/NoRedactionIndicator.txt")
.addAll(ResourceLoader.load("dictionaries/no_redaction_indicator.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(REDACTION_INDICATOR, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/redaction_indicator.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(HINT_ONLY, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/hint_only.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
@ -149,17 +161,23 @@ public class RedactionIntegrationTest {
typeColorMap.put(VERTEBRATES_CODE, new float[]{0, 1, 0});
typeColorMap.put(ADDRESS_CODE, new float[]{0, 1, 1});
typeColorMap.put(NAME_CODE, new float[]{1, 1, 0});
typeColorMap.put(NO_REDACTION_INDICATOR, new float[]{1, 0.502f, 0});
typeColorMap.put(NO_REDACTION_INDICATOR, new float[]{0.8f, 0, 0.8f});
typeColorMap.put(REDACTION_INDICATOR, new float[]{1, 0.502f, 0.1f});
typeColorMap.put(HINT_ONLY, new float[]{0.8f, 1, 0.8f});
hintTypeMap.put(VERTEBRATES_CODE, true);
hintTypeMap.put(ADDRESS_CODE, false);
hintTypeMap.put(NAME_CODE, false);
hintTypeMap.put(NO_REDACTION_INDICATOR, true);
hintTypeMap.put(REDACTION_INDICATOR, true);
hintTypeMap.put(HINT_ONLY, true);
caseInSensitiveMap.put(VERTEBRATES_CODE, true);
caseInSensitiveMap.put(ADDRESS_CODE, false);
caseInSensitiveMap.put(NAME_CODE, false);
caseInSensitiveMap.put(NO_REDACTION_INDICATOR, true);
caseInSensitiveMap.put(REDACTION_INDICATOR, true);
caseInSensitiveMap.put(HINT_ONLY, true);
}

1
redaction-service-v1/redaction-service-server-v1/src/test/resources/dictionaries/NoRedactionIndicator.txt
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@ -1 +0,0 @@
In Vitro

2
redaction-service-v1/redaction-service-server-v1/src/test/resources/dictionaries/hint_only.txt Normal file
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@ -0,0 +1,2 @@
guideline
unpublished

4
redaction-service-v1/redaction-service-server-v1/src/test/resources/dictionaries/names.txt
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@ -674,6 +674,7 @@ Barnes E
Blunt H
Bohnenberger S
Broich K
Broich
Cords SM
Cowie D
Davies S
@ -710,6 +711,8 @@ Randall R
Manton J
Nagy K
Petus–Árpásy M
Petus–Árpásy
Petus-Árpásy
Roth M
Shearer J
Sieber M
@ -2380,6 +2383,7 @@ Bowles
Dollenmeier
Myhr
Chang et al
Chang
Beck
Orton
Medjakovic

3
redaction-service-v1/redaction-service-server-v1/src/test/resources/dictionaries/no_redaction_indicator.txt Normal file
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@ -0,0 +1,3 @@
published paper
in vitro
in-vitro

9
redaction-service-v1/redaction-service-server-v1/src/test/resources/dictionaries/redaction_indicator.txt Normal file
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@ -0,0 +1,9 @@
in vivo
in-vivo
dermal penetration
oral toxicity
oral-toxicity
acute toxicity
acute-toxicity
eco toxicity
eco-toxicity

3
redaction-service-v1/redaction-service-server-v1/src/test/resources/dictionaries/vertebrates.txt
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@ -226,4 +226,5 @@ Poultry
Guinea-pigs
White rabbits
Birds
Wood mice
Wood mice
Mallard

50
redaction-service-v1/redaction-service-server-v1/src/test/resources/drools/rules.drl
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@ -32,27 +32,47 @@ rule "3: Do not redact Names and Addresses if no redaction Indicator is containe
end
rule "4: Redact contact information, if applicant is found"
rule "4: Redact Names and Addresses if no_redaction_indicator and redaction_indicator is contained"
when
eval(section.getText().toLowerCase().contains("applicant"));
eval(section.contains("vertebrate")==true && section.contains("no_redaction_indicator")==true && section.contains("redaction_indicator")==true);
then
section.redactLineAfter("Name:", "address", 4, "Redacted because of Rule 4");
section.redactBetween("Address:", "Contact", "address", 4, "Redacted because of Rule 4");
section.redactLineAfter("Contact point:", "address", 4, "Redacted because of Rule 4");
section.redactLineAfter("Phone:", "address", 4, "Redacted because of Rule 4");
section.redactLineAfter("Fax:", "address", 4, "Redacted because of Rule 4");
section.redactLineAfter("E-mail:", "address", 4, "Redacted because of Rule 4");
section.redact("name", 4, "Vertebrate was found and no_redaction_indicator and redaction_indicator");
section.redact("address", 4, "Vertebrate was found and no_redaction_indicator and redaction_indicator");
end
rule "5: Redact contact information, if 'Producer of the plant protection product' is found"
rule "5: Do not redact in guideline sections"
when
eval(section.headlineContainsWord("guideline") || section.headlineContainsWord("Guidance"));
then
section.redactNot("name", 5, "Section is a guideline section.");
section.redactNot("address", 5, "Section is a guideline section.");
end
rule "6: Redact contact information, if applicant is found"
when
eval(section.getText().toLowerCase().contains("applicant") == true);
then
section.redactLineAfter("Name:", "address", 6, "contact information was found");
section.redactBetween("Address:", "Contact", "address", 6, "contact information was found");
section.redactLineAfter("Contact point:", "address", 6, "contact information was found");
section.redactLineAfter("Phone:", "address", 6, "contact information was found");
section.redactLineAfter("Fax:", "address", 6, "contact information was found");
section.redactLineAfter("E-mail:", "address", 6, "contact information was found");
section.redactLineAfter("Contact:", "address", 6, "contact information was found");
section.redactLineAfter("Telephone number:", "address", 6, "contact information was found");
end
rule "7: Redact contact information, if 'Producer of the plant protection product' is found"
when
eval(section.getText().contains("Producer of the plant protection product"));
then
section.redactLineAfter("Name:", "address", 5, "xxxx");
section.redactBetween("Address:", "Contact", "address", 5, "xxxx");
section.redactBetween("Contact:", "Phone", "address", 5, "xxxx");
section.redactLineAfter("Phone:", "address", 5, "xxxx");
section.redactLineAfter("Fax:", "address", 5, "xxxx");
section.redactLineAfter("E-mail:", "address", 5, "xxxx");
section.redactLineAfter("Name:", "address", 7, "Producer of the plant protection product was found");
section.redactBetween("Address:", "Contact", "address", 7, "Producer of the plant protection product was found");
section.redactBetween("Contact:", "Phone", "address", 7, "Producer of the plant protection product was found");
section.redactLineAfter("Phone:", "address", 7, "Producer of the plant protection product was found");
section.redactLineAfter("Fax:", "address", 7, "Producer of the plant protection product was found");
section.redactLineAfter("E-mail:", "address", 7, "Producer of the plant protection product was found");
end