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RED-8645 - Update RM rules

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This commit is contained in:
Andrei Isvoran 2024-03-05 16:59:33 +02:00
parent 58fb062a79
commit e70c96ca1d
3 changed files with 140 additions and 318 deletions
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85
redaction-service-v1/redaction-service-server-v1/src/test/resources/drools/all_redact_manager_rules.drl
View File

@ -159,17 +159,18 @@ rule "CBI.3.0: Redacted because Section contains a vertebrate"
rule "CBI.3.1: Redacted because table row contains a vertebrate"
when
$table: Table(hasEntitiesOfType("vertebrate"), hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address"))
$cellsWithvertebrate: TableCell() from $table.streamTableCellsWhichContainType("vertebrate").toList()
$tableCell: TableCell(row == $cellsWithvertebrate.row) from $table.streamTableCells().toList()
$authorOrAddress: TextEntity(type() == "CBI_author" || type() == "CBI_address", active()) from $tableCell.getEntities()
$table: Table(hasEntitiesOfType("vertebrate"), (hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address")))
then
$authorOrAddress.applyWithReferences(
$table.streamEntitiesWhereRowContainsEntitiesOfType(List.of("vertebrate"))
.filter(entity -> entity.getType().equals("CBI_author") || entity.getType().equals("CBI_address"))
.forEach(entity -> {
entity.applyWithReferences(
"CBI.3.1",
"Vertebrate found",
"Reg (EC) No 1107/2009 Art. 63 (2g)",
$table.getEntitiesOfTypeInSameRow("vertebrate", $authorOrAddress)
$table.getEntitiesOfTypeInSameRow("vertebrate", entity)
);
});
end
rule "CBI.3.2: Do not redact because Section does not contain a vertebrate"
@ -190,20 +191,21 @@ rule "CBI.3.3: Do not redact because table row does not contain a vertebrate"
end
// Rule unit: CBI.4
rule "CBI.4.0: Do not redact Names and Addresses if no_redaction_indicator is found in Section"
rule "CBI.4.1: Don't redact authors or addresses which appear in the same row as a vertebrate and a no_redaction_indicator"
when
$section: Section(!hasTables(),
hasEntitiesOfType("vertebrate"),
hasEntitiesOfType("no_redaction_indicator"),
(hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address")))
$table: Table(hasEntitiesOfType("no_redaction_indicator"),
hasEntitiesOfType("vertebrate"),
(hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address")))
then
$section.getEntitiesOfType(List.of("CBI_author", "CBI_address"))
$table.streamEntitiesWhereRowContainsEntitiesOfType(List.of("vertebrate", "no-redaction_indicator"))
.filter(entity -> entity.getType().equals("CBI_author") || entity.getType().equals("CBI_address"))
.forEach(entity -> {
entity.skipWithReferences(
"CBI.4.0",
"CBI.4.1",
"Vertebrate but a no redaction indicator found",
$section.getEntitiesOfType("no_redaction_indicator")
Stream.concat(
$table.getEntitiesOfTypeInSameRow("vertebrate", entity).stream(),
$table.getEntitiesOfTypeInSameRow("no_redaction_indicator", entity).stream()).toList()
);
});
end
@ -249,20 +251,22 @@ rule "CBI.5.0: Redact Names and Addresses if no_redaction_indicator but also red
rule "CBI.5.1: Redact Names and Addresses if no_redaction_indicator but also redaction_indicator is found in table row"
when
$table: Table(hasEntitiesOfType("no_redaction_indicator"), hasEntitiesOfType("redaction_indicator"), hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address"))
TableCell($row: row) from $table.streamTableCellsWhichContainType("redaction_indicator").toList()
TableCell(row == $row) from $table.streamTableCellsWhichContainType("no_redaction_indicator").toList()
$tableCell: TableCell(row == $row) from $table.streamTableCells().toList()
$entity: TextEntity(type() == "CBI_author" || type() == "CBI_address", active()) from $tableCell.getEntities()
$table: Table(hasEntitiesOfType("no_redaction_indicator"),
hasEntitiesOfType("redaction_indicator"),
(hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address")))
then
$entity.applyWithReferences(
$table.streamEntitiesWhereRowContainsEntitiesOfType(List.of("redaction_indicator", "no_redaction_indicator"))
.filter(entity -> entity.getType().equals("CBI_author") || entity.getType().equals("CBI_address"))
.forEach(entity -> {
entity.applyWithReferences(
"CBI.5.1",
"no_redaction_indicator but also redaction_indicator found",
"Reg (EC) No 1107/2009 Art. 63 (2g)",
Stream.concat(
$table.getEntitiesOfTypeInSameRow("redaction_indicator", $entity).stream(),
$table.getEntitiesOfTypeInSameRow("no_redaction_indicator", $entity).stream()).toList()
$table.getEntitiesOfTypeInSameRow("redaction_indicator", entity).stream(),
$table.getEntitiesOfTypeInSameRow("no_redaction_indicator", entity).stream()).toList()
);
});
end
@ -352,17 +356,18 @@ rule "CBI.8.0: Redacted because Section contains must_redact entity"
rule "CBI.8.1: Redacted because table row contains must_redact entity"
when
$table: Table(hasEntitiesOfType("must_redact"), hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address"))
$cellsWithMustRedact: TableCell() from $table.streamTableCellsWhichContainType("must_redact").toList()
$tableCell: TableCell(row == $cellsWithMustRedact.row) from $table.streamTableCells().toList()
$authorOrAddress: TextEntity(type() == "CBI_author" || type() == "CBI_address", active()) from $tableCell.getEntities()
$table: Table(hasEntitiesOfType("must_redact"), (hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address")))
then
$authorOrAddress.applyWithReferences(
"CBI.8.1",
"Must_redact found",
"Reg (EC) No 1107/2009 Art. 63 (2g)",
$table.getEntitiesOfTypeInSameRow("must_redact", $authorOrAddress)
);
$table.streamEntitiesWhereRowContainsEntitiesOfType(List.of("must_redact"))
.filter(entity -> entity.getType().equals("CBI_author") || entity.getType().equals("CBI_address"))
.forEach(entity -> {
entity.applyWithReferences(
"CBI.8.1",
"Must_redact found",
"Reg (EC) No 1107/2009 Art. 63 (2g)",
$table.getEntitiesOfTypeInSameRow("must_redact", entity)
);
});
end
@ -441,15 +446,13 @@ rule "CBI.12.0: Redact and recommend TableCell with header 'Author' or 'Author(s
$table: Table(hasHeader("Author(s)") || hasHeader("Author"), hasHeaderIgnoreCase("Vertebrate Study Y/N"))
TableCell(header, containsAnyStringIgnoreCase("Author", "Author(s)"), $authorCol: col) from $table.streamHeaders().toList()
TableCell(header, containsStringIgnoreCase("Vertebrate study Y/N"), $vertebrateCol: col) from $table.streamHeaders().toList()
TableCell(!header, containsAnyString("Yes", "Y"), $rowWithYes: row) from $table.streamCol($vertebrateCol).toList()
$authorCell: TableCell(row == $rowWithYes) from $table.streamCol($authorCol).toList()
$rowCell: TableCell(!header, containsAnyString("Yes", "Y"), $rowWithYes: row) from $table.streamCol($vertebrateCol).toList()
TableCell(row == $rowWithYes) from $table.streamCol($authorCol).toList()
then
entityCreationService.bySemanticNode($authorCell, "CBI_author", EntityType.ENTITY)
.ifPresent(authorEntity -> {
authorEntity.redact("CBI.12.0", "Redacted because it's row belongs to a vertebrate study", "Article 39(e)(3) of Regulation (EC) No 178/2002");
dictionary.addMultipleAuthorsAsRecommendation(authorEntity);
});
entityCreationService.bySemanticNode($rowCell, "must_redact", EntityType.HINT)
.ifPresent(yesEntity -> {
yesEntity.skip("CBI.12.0", "must_redact");
});
end
rule "CBI.12.1: Redact and recommend TableCell with header 'Author' or 'Author(s)' and header 'Vertebrate study Y/N' with value 'Yes' (vertebrate study)"

288
redaction-service-v1/redaction-service-server-v1/src/test/resources/drools/rules.drl
View File

@ -102,17 +102,18 @@ rule "CBI.3.0: Redacted because Section contains a vertebrate"
rule "CBI.3.1: Redacted because table row contains a vertebrate"
when
$table: Table(hasEntitiesOfType("vertebrate"), hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address"))
$cellsWithvertebrate: TableCell() from $table.streamTableCellsWhichContainType("vertebrate").toList()
$tableCell: TableCell(row == $cellsWithvertebrate.row) from $table.streamTableCells().toList()
$authorOrAddress: TextEntity(type() == "CBI_author" || type() == "CBI_address", active()) from $tableCell.getEntities()
$table: Table(hasEntitiesOfType("vertebrate"), (hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address")))
then
$authorOrAddress.applyWithReferences(
$table.streamEntitiesWhereRowContainsEntitiesOfType(List.of("vertebrate"))
.filter(entity -> entity.getType().equals("CBI_author") || entity.getType().equals("CBI_address"))
.forEach(entity -> {
entity.applyWithReferences(
"CBI.3.1",
"Vertebrate found",
"Reg (EC) No 1107/2009 Art. 63 (2g)",
$table.getEntitiesOfTypeInSameRow("vertebrate", $authorOrAddress)
$table.getEntitiesOfTypeInSameRow("vertebrate", entity)
);
});
end
rule "CBI.3.2: Do not redact because Section does not contain a vertebrate"
@ -133,20 +134,21 @@ rule "CBI.3.3: Do not redact because table row does not contain a vertebrate"
end
// Rule unit: CBI.4
rule "CBI.4.0: Do not redact Names and Addresses if no_redaction_indicator is found in Section"
rule "CBI.4.1: Don't redact authors or addresses which appear in the same row as a vertebrate and a no_redaction_indicator"
when
$section: Section(!hasTables(),
hasEntitiesOfType("vertebrate"),
hasEntitiesOfType("no_redaction_indicator"),
(hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address")))
$table: Table(hasEntitiesOfType("no_redaction_indicator"),
hasEntitiesOfType("vertebrate"),
(hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address")))
then
$section.getEntitiesOfType(List.of("CBI_author", "CBI_address"))
$table.streamEntitiesWhereRowContainsEntitiesOfType(List.of("vertebrate", "no-redaction_indicator"))
.filter(entity -> entity.getType().equals("CBI_author") || entity.getType().equals("CBI_address"))
.forEach(entity -> {
entity.skipWithReferences(
"CBI.4.0",
"CBI.4.1",
"Vertebrate but a no redaction indicator found",
$section.getEntitiesOfType("no_redaction_indicator")
Stream.concat(
$table.getEntitiesOfTypeInSameRow("vertebrate", entity).stream(),
$table.getEntitiesOfTypeInSameRow("no_redaction_indicator", entity).stream()).toList()
);
});
end
@ -192,20 +194,22 @@ rule "CBI.5.0: Redact Names and Addresses if no_redaction_indicator but also red
rule "CBI.5.1: Redact Names and Addresses if no_redaction_indicator but also redaction_indicator is found in table row"
when
$table: Table(hasEntitiesOfType("no_redaction_indicator"), hasEntitiesOfType("redaction_indicator"), hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address"))
TableCell($row: row) from $table.streamTableCellsWhichContainType("redaction_indicator").toList()
TableCell(row == $row) from $table.streamTableCellsWhichContainType("no_redaction_indicator").toList()
$tableCell: TableCell(row == $row) from $table.streamTableCells().toList()
$entity: TextEntity(type() == "CBI_author" || type() == "CBI_address", active()) from $tableCell.getEntities()
$table: Table(hasEntitiesOfType("no_redaction_indicator"),
hasEntitiesOfType("redaction_indicator"),
(hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address")))
then
$entity.applyWithReferences(
$table.streamEntitiesWhereRowContainsEntitiesOfType(List.of("redaction_indicator", "no_redaction_indicator"))
.filter(entity -> entity.getType().equals("CBI_author") || entity.getType().equals("CBI_address"))
.forEach(entity -> {
entity.applyWithReferences(
"CBI.5.1",
"no_redaction_indicator but also redaction_indicator found",
"Reg (EC) No 1107/2009 Art. 63 (2g)",
Stream.concat(
$table.getEntitiesOfTypeInSameRow("redaction_indicator", $entity).stream(),
$table.getEntitiesOfTypeInSameRow("no_redaction_indicator", $entity).stream()).toList()
$table.getEntitiesOfTypeInSameRow("redaction_indicator", entity).stream(),
$table.getEntitiesOfTypeInSameRow("no_redaction_indicator", entity).stream()).toList()
);
});
end
@ -227,17 +231,18 @@ rule "CBI.8.0: Redacted because Section contains must_redact entity"
rule "CBI.8.1: Redacted because table row contains must_redact entity"
when
$table: Table(hasEntitiesOfType("must_redact"), hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address"))
$cellsWithMustRedact: TableCell() from $table.streamTableCellsWhichContainType("must_redact").toList()
$tableCell: TableCell(row == $cellsWithMustRedact.row) from $table.streamTableCells().toList()
$authorOrAddress: TextEntity(type() == "CBI_author" || type() == "CBI_address", active()) from $tableCell.getEntities()
$table: Table(hasEntitiesOfType("must_redact"), (hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address")))
then
$authorOrAddress.applyWithReferences(
"CBI.8.1",
"Must_redact found",
"Reg (EC) No 1107/2009 Art. 63 (2g)",
$table.getEntitiesOfTypeInSameRow("must_redact", $authorOrAddress)
);
$table.streamEntitiesWhereRowContainsEntitiesOfType(List.of("must_redact"))
.filter(entity -> entity.getType().equals("CBI_author") || entity.getType().equals("CBI_address"))
.forEach(entity -> {
entity.applyWithReferences(
"CBI.8.1",
"Must_redact found",
"Reg (EC) No 1107/2009 Art. 63 (2g)",
$table.getEntitiesOfTypeInSameRow("must_redact", entity)
);
});
end
@ -281,41 +286,19 @@ rule "CBI.11.0: Recommend all CBI_author entities in Table with Vertebrate Study
// Rule unit: CBI.12
rule "CBI.12.0: Redact and recommend TableCell with header 'Author' or 'Author(s)' and header 'Vertebrate study Y/N' with value 'Yes' (non vertebrate study)"
rule "CBI.12.0: Redact and recommend TableCell with header 'Author' or 'Author(s)' and header 'Vertebrate study Y/N' with value 'Yes'"
agenda-group "LOCAL_DICTIONARY_ADDS"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$table: Table(hasHeader("Author(s)") || hasHeader("Author"), hasHeaderIgnoreCase("Vertebrate Study Y/N"))
TableCell(header, containsAnyStringIgnoreCase("Author", "Author(s)"), $authorCol: col) from $table.streamHeaders().toList()
TableCell(header, containsStringIgnoreCase("Vertebrate study Y/N"), $vertebrateCol: col) from $table.streamHeaders().toList()
TableCell(!header, containsAnyString("Yes", "Y"), $rowWithYes: row) from $table.streamCol($vertebrateCol).toList()
$authorCell: TableCell(row == $rowWithYes) from $table.streamCol($authorCol).toList()
$rowCell: TableCell(!header, containsAnyString("Yes", "Y"), $rowWithYes: row) from $table.streamCol($vertebrateCol).toList()
TableCell(row == $rowWithYes) from $table.streamCol($authorCol).toList()
then
entityCreationService.bySemanticNode($authorCell, "CBI_author", EntityType.ENTITY)
.ifPresent(authorEntity -> {
authorEntity.redact("CBI.12.0", "Redacted because it's row belongs to a vertebrate study", "Article 39(e)(3) of Regulation (EC) No 178/2002");
dictionary.addMultipleAuthorsAsRecommendation(authorEntity);
});
end
rule "CBI.12.1: Redact and recommend TableCell with header 'Author' or 'Author(s)' and header 'Vertebrate study Y/N' with value 'Yes' (vertebrate study)"
agenda-group "LOCAL_DICTIONARY_ADDS"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$table: Table(hasHeader("Author(s)") || hasHeader("Author"), hasHeaderIgnoreCase("Vertebrate Study Y/N"))
TableCell(header, containsAnyStringIgnoreCase("Author", "Author(s)"), $authorCol: col) from $table.streamHeaders().toList()
TableCell(header, containsStringIgnoreCase("Vertebrate study Y/N"), $vertebrateCol: col) from $table.streamHeaders().toList()
TableCell(!header, containsAnyString("Yes", "Y"), $rowWithYes: row) from $table.streamCol($vertebrateCol).toList()
$authorCell: TableCell(row == $rowWithYes) from $table.streamCol($authorCol).toList()
then
entityCreationService.bySemanticNode($authorCell, "CBI_author", EntityType.ENTITY)
.ifPresent(authorEntity -> {
authorEntity.redact("CBI.12.1", "Redacted because it's row belongs to a vertebrate study", "Article 39(e)(2) of Regulation (EC) No 178/2002");
dictionary.addMultipleAuthorsAsRecommendation(authorEntity);
});
entityCreationService.bySemanticNode($rowCell, "must_redact", EntityType.HINT)
.ifPresent(yesEntity -> {
yesEntity.skip("CBI.12.0", "must_redact");
});
end
rule "CBI.12.2: Skip TableCell with header 'Author' or 'Author(s)' and header 'Vertebrate study Y/N' with value 'No'"
@ -388,10 +371,9 @@ rule "CBI.15.1: Redact CBI_author and CBI_address if row contains \"determinatio
// Rule unit: CBI.16
rule "CBI.16.0: Add CBI_author with \"et al.\" RegEx (non vertebrate study)"
rule "CBI.16.0: Add CBI_author with \"et al.\" RegEx"
agenda-group "LOCAL_DICTIONARY_ADDS"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(containsString("et al."))
then
entityCreationService.byRegex("\\b([A-ZÄÖÜ][^\\s\\.,]+( [A-ZÄÖÜ]{1,2}\\.?)?( ?[A-ZÄÖÜ]\\.?)?) et al\\.?", "CBI_author", EntityType.ENTITY, 1, $section)
@ -401,20 +383,6 @@ rule "CBI.16.0: Add CBI_author with \"et al.\" RegEx (non vertebrate study)"
});
end
rule "CBI.16.1: Add CBI_author with \"et al.\" RegEx (vertebrate study)"
agenda-group "LOCAL_DICTIONARY_ADDS"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(containsString("et al."))
then
entityCreationService.byRegex("\\b([A-ZÄÖÜ][^\\s\\.,]+( [A-ZÄÖÜ]{1,2}\\.?)?( ?[A-ZÄÖÜ]\\.?)?) et al\\.?", "CBI_author", EntityType.ENTITY, 1, $section)
.forEach(entity -> {
entity.redact("CBI.16.1", "Author found by \"et al\" regex", "Article 39(e)(2) of Regulation (EC) No 178/2002");
dictionary.recommendEverywhere(entity);
});
end
// Rule unit: CBI.17
rule "CBI.17.0: Add recommendation for Addresses in Test Organism sections, without colon"
when
@ -467,10 +435,9 @@ rule "CBI.19.0: Expand CBI_author entities with salutation prefix"
// Rule unit: CBI.20
rule "CBI.20.0: Redact between \"PERFORMING LABORATORY\" and \"LABORATORY PROJECT ID:\" (non vertebrate study)"
rule "CBI.20.0: Redact between \"PERFORMING LABORATORY\" and \"LABORATORY PROJECT ID:\""
agenda-group "LOCAL_DICTIONARY_ADDS"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(!hasTables(), containsString("PERFORMING LABORATORY:"), containsString("LABORATORY PROJECT ID:"))
then
entityCreationService.betweenStrings("PERFORMING LABORATORY:", "LABORATORY PROJECT ID:", "CBI_address", EntityType.ENTITY, $section)
@ -480,64 +447,30 @@ rule "CBI.20.0: Redact between \"PERFORMING LABORATORY\" and \"LABORATORY PROJEC
});
end
rule "CBI.20.1: Redact between \"PERFORMING LABORATORY\" and \"LABORATORY PROJECT ID:\" (vertebrate study)"
agenda-group "LOCAL_DICTIONARY_ADDS"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(!hasTables(), containsString("PERFORMING LABORATORY:"), containsString("LABORATORY PROJECT ID:"))
then
entityCreationService.betweenStrings("PERFORMING LABORATORY:", "LABORATORY PROJECT ID:", "CBI_address", EntityType.ENTITY, $section)
.forEach(laboratoryEntity -> {
laboratoryEntity.redact("CBI.20.1", "PERFORMING LABORATORY was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
dictionary.recommendEverywhere(laboratoryEntity);
});
end
//------------------------------------ PII rules ------------------------------------
// Rule unit: PII.0
rule "PII.0.0: Redact all PII (non vertebrate study)"
rule "PII.0.0: Redact all PII"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$pii: TextEntity(type() == "PII", dictionaryEntry)
then
$pii.redact("PII.0.0", "Personal Information found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
end
rule "PII.0.1: Redact all PII (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$pii: TextEntity(type() == "PII", dictionaryEntry)
then
$pii.redact("PII.0.1", "Personal Information found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
end
// Rule unit: PII.1
rule "PII.1.0: Redact Emails by RegEx (Non vertebrate study)"
rule "PII.1.0: Redact Emails by RegEx"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(containsString("@"))
then
entityCreationService.byRegex("\\b([A-Za-z0-9._%+\\-]+@[A-Za-z0-9.\\-]+\\.[A-Za-z\\-]{1,23}[A-Za-z])\\b", "PII", EntityType.ENTITY, 1, $section)
.forEach(emailEntity -> emailEntity.redact("PII.1.0", "Found by Email Regex", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
end
rule "PII.1.1: Redact Emails by RegEx (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(containsString("@"))
then
entityCreationService.byRegex("\\b([A-Za-z0-9._%+\\-]+@[A-Za-z0-9.\\-]+\\.[A-Za-z\\-]{1,23}[A-Za-z])\\b", "PII", EntityType.ENTITY, 1, $section)
.forEach(emailEntity -> emailEntity.redact("PII.1.1", "Found by Email Regex", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
end
// Rule unit: PII.4
rule "PII.4.0: Redact line after contact information keywords (non vertebrate study)"
rule "PII.4.0: Redact line after contact information keywords"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$contactKeyword: String() from List.of("Contact point:",
"Contact:",
"Alternative contact:",
@ -563,39 +496,10 @@ rule "PII.4.0: Redact line after contact information keywords (non vertebrate st
.forEach(contactEntity -> contactEntity.redact("PII.4.0", "Found after \"" + $contactKeyword + "\" contact keyword", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.4.1: Redact line after contact information keywords (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$contactKeyword: String() from List.of("Contact point:",
"Contact:",
"Alternative contact:",
"European contact:",
"No:",
"Contact:",
"Tel.:",
"Tel:",
"Telephone number:",
"Telephone No:",
"Telephone:",
"Phone No.",
"Phone:",
"Fax number:",
"Fax:",
"E-mail:",
"Email:",
"e-mail:",
"E-mail address:")
$section: Section(containsString($contactKeyword))
then
entityCreationService.lineAfterString($contactKeyword, "PII", EntityType.ENTITY, $section)
.forEach(contactEntity -> contactEntity.redact("PII.4.1", "Found after \"" + $contactKeyword + "\" contact keyword", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
// Rule unit: PII.6
rule "PII.6.0: Redact line between contact keywords (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section((containsString("No:") && containsString("Fax")) || (containsString("Contact:") && containsString("Tel")))
then
Stream.concat(
@ -605,23 +509,10 @@ rule "PII.6.0: Redact line between contact keywords (non vertebrate study)"
.forEach(contactEntity -> contactEntity.redact("PII.6.0", "Found between contact keywords", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
end
rule "PII.6.1: Redact line between contact keywords (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section((containsString("No:") && containsString("Fax")) || (containsString("Contact:") && containsString("Tel")))
then
Stream.concat(
entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
)
.forEach(contactEntity -> contactEntity.redact("PII.6.1", "Found between contact keywords", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
end
// Rule unit: PII.7
rule "PII.7.0: Redact contact information if applicant is found (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(getHeadline().containsString("applicant") ||
getHeadline().containsString("Primary contact") ||
getHeadline().containsString("Alternative contact") ||
@ -637,29 +528,10 @@ rule "PII.7.0: Redact contact information if applicant is found (non vertebrate
.forEach(entity -> entity.redact("PII.7.0", "Applicant information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
end
rule "PII.7.1: Redact contact information if applicant is found (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(getHeadline().containsString("applicant") ||
getHeadline().containsString("Primary contact") ||
getHeadline().containsString("Alternative contact") ||
containsString("Applicant") ||
containsString("Telephone number:"))
then
Stream.concat(entityCreationService.lineAfterStrings(List.of("Contact point:", "Contact:", "Alternative contact:", "European contact:", "No:", "Contact:", "Tel.:", "Tel:", "Telephone number:",
"Telephone No:", "Telephone:", "Phone No.", "Phone:", "Fax number:", "Fax:", "E-mail:", "Email:", "e-mail:", "E-mail address:"), "PII", EntityType.ENTITY, $section),
Stream.concat(
entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
))
.forEach(entity -> entity.redact("PII.7.1", "Applicant information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
end
// Rule unit: PII.8
rule "PII.8.0: Redact contact information if producer is found (non vertebrate study)"
rule "PII.8.0: Redact contact information if producer is found"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(containsStringIgnoreCase("producer of the plant protection") ||
containsStringIgnoreCase("producer of the active substance") ||
containsStringIgnoreCase("manufacturer of the active substance") ||
@ -675,44 +547,16 @@ rule "PII.8.0: Redact contact information if producer is found (non vertebrate s
.forEach(entity -> entity.redact("PII.8.0", "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.8.1: Redact contact information if producer is found (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(containsStringIgnoreCase("producer of the plant protection") ||
containsStringIgnoreCase("producer of the active substance") ||
containsStringIgnoreCase("manufacturer of the active substance") ||
containsStringIgnoreCase("manufacturer:") ||
containsStringIgnoreCase("Producer or producers of the active substance"))
then
Stream.concat(entityCreationService.lineAfterStrings(List.of("Contact point:", "Contact:", "Alternative contact:", "European contact:", "No:", "Contact:", "Tel.:", "Tel:", "Telephone number:",
"Telephone No:", "Telephone:", "Phone No.", "Phone:", "Fax number:", "Fax:", "E-mail:", "Email:", "e-mail:", "E-mail address:"), "PII", EntityType.ENTITY, $section),
Stream.concat(
entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
))
.forEach(entity -> entity.redact("PII.8.1", "Producer was found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
end
// Rule unit: PII.9
rule "PII.9.0: Redact between \"AUTHOR(S)\" and \"(STUDY) COMPLETION DATE\" (non vertebrate study)"
rule "PII.9.0: Redact between \"AUTHOR(S)\" and \"(STUDY) COMPLETION DATE\""
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$document: Document(containsStringIgnoreCase("AUTHOR(S)"), containsAnyStringIgnoreCase("COMPLETION DATE", "STUDY COMPLETION DATE"))
then
entityCreationService.shortestBetweenAnyStringIgnoreCase(List.of("AUTHOR(S)", "AUTHOR(S):"), List.of("COMPLETION DATE", "COMPLETION DATE:", "STUDY COMPLETION DATE", "STUDY COMPLETION DATE:"), "PII", EntityType.ENTITY, $document)
.forEach(authorEntity -> authorEntity.redact("PII.9.0", "AUTHOR(S) was found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
end
rule "PII.9.1: Redact between \"AUTHOR(S)\" and \"(STUDY) COMPLETION DATE\" (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$document: Document(containsStringIgnoreCase("AUTHOR(S)"), containsAnyStringIgnoreCase("COMPLETION DATE", "STUDY COMPLETION DATE"))
then
entityCreationService.shortestBetweenAnyStringIgnoreCase(List.of("AUTHOR(S)", "AUTHOR(S):"), List.of("COMPLETION DATE", "COMPLETION DATE:", "STUDY COMPLETION DATE", "STUDY COMPLETION DATE:"), "PII", EntityType.ENTITY, $document)
.forEach(authorEntity -> authorEntity.redact("PII.9.1", "AUTHOR(S) was found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
end
// Rule unit: PII.11
rule "PII.11.0: Redact On behalf of Sequani Ltd.:"
@ -727,22 +571,12 @@ rule "PII.11.0: Redact On behalf of Sequani Ltd.:"
// Rule unit: PII.12
rule "PII.12.0: Expand PII entities with salutation prefix"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$entityToExpand: TextEntity(type() == "PII", anyMatch(textBefore, "\\b(Mrs?|Ms|Miss|Sir|Madame?|Mme)\\s?\\.?\\s*"))
then
entityCreationService.byPrefixExpansionRegex($entityToExpand, "\\b(Mrs?|Ms|Miss|Sir|Madame?|Mme)\\s?\\.?\\s*")
.ifPresent(expandedEntity -> expandedEntity.apply("PII.12.0", "Expanded PII with salutation prefix", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
end
rule "PII.12.1: Expand PII entities with salutation prefix"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$entityToExpand: TextEntity(type() == "PII", anyMatch(textBefore, "\\b(Mrs?|Ms|Miss|Sir|Madame?|Mme)\\s?\\.?\\s*"))
then
entityCreationService.byPrefixExpansionRegex($entityToExpand, "\\b(Mrs?|Ms|Miss|Sir|Madame?|Mme)\\s?\\.?\\s*")
.ifPresent(expandedEntity -> expandedEntity.apply("PII.12.1", "Expanded PII with salutation prefix", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
end
//------------------------------------ Other rules ------------------------------------
@ -759,20 +593,11 @@ rule "ETC.1.0: Redact Purity"
// Rule unit: ETC.2
rule "ETC.2.0: Redact signatures (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$signature: Image(imageType == ImageType.SIGNATURE)
then
$signature.redact("ETC.2.0", "Signature Found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
end
rule "ETC.2.1: Redact signatures (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$signature: Image(imageType == ImageType.SIGNATURE)
then
$signature.redact("ETC.2.1", "Signature Found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
end
// Rule unit: ETC.3
rule "ETC.3.0: Skip logos (non vertebrate study)"
@ -850,20 +675,11 @@ rule "ETC.7.0: Guidelines FileAttributes"
// Rule unit: ETC.8
rule "ETC.8.0: Redact formulas (vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$logo: Image(imageType == ImageType.FORMULA)
then
$logo.redact("ETC.8.0", "Logo Found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
end
rule "ETC.8.1: Redact formulas (non vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$logo: Image(imageType == ImageType.FORMULA)
then
$logo.redact("ETC.8.1", "Logo Found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
end
//------------------------------------ AI rules ------------------------------------

85
redaction-service-v1/rules-management/src/main/resources/all_redact_manager_rules.drl
View File

@ -159,17 +159,18 @@ rule "CBI.3.0: Redacted because Section contains a vertebrate"
rule "CBI.3.1: Redacted because table row contains a vertebrate"
when
$table: Table(hasEntitiesOfType("vertebrate"), hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address"))
$cellsWithvertebrate: TableCell() from $table.streamTableCellsWhichContainType("vertebrate").toList()
$tableCell: TableCell(row == $cellsWithvertebrate.row) from $table.streamTableCells().toList()
$authorOrAddress: TextEntity(type() == "CBI_author" || type() == "CBI_address", active()) from $tableCell.getEntities()
$table: Table(hasEntitiesOfType("vertebrate"), (hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address")))
then
$authorOrAddress.applyWithReferences(
$table.streamEntitiesWhereRowContainsEntitiesOfType(List.of("vertebrate"))
.filter(entity -> entity.getType().equals("CBI_author") || entity.getType().equals("CBI_address"))
.forEach(entity -> {
entity.applyWithReferences(
"CBI.3.1",
"Vertebrate found",
"Reg (EC) No 1107/2009 Art. 63 (2g)",
$table.getEntitiesOfTypeInSameRow("vertebrate", $authorOrAddress)
$table.getEntitiesOfTypeInSameRow("vertebrate", entity)
);
});
end
@ -191,20 +192,21 @@ rule "CBI.3.3: Do not redact because table row does not contain a vertebrate"
end
// Rule unit: CBI.4
rule "CBI.4.0: Do not redact Names and Addresses if no_redaction_indicator is found in Section"
rule "CBI.4.1: Don't redact authors or addresses which appear in the same row as a vertebrate and a no_redaction_indicator"
when
$section: Section(!hasTables(),
hasEntitiesOfType("vertebrate"),
hasEntitiesOfType("no_redaction_indicator"),
(hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address")))
$table: Table(hasEntitiesOfType("no_redaction_indicator"),
hasEntitiesOfType("vertebrate"),
(hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address")))
then
$section.getEntitiesOfType(List.of("CBI_author", "CBI_address"))
$table.streamEntitiesWhereRowContainsEntitiesOfType(List.of("vertebrate", "no-redaction_indicator"))
.filter(entity -> entity.getType().equals("CBI_author") || entity.getType().equals("CBI_address"))
.forEach(entity -> {
entity.skipWithReferences(
"CBI.4.0",
"CBI.4.1",
"Vertebrate but a no redaction indicator found",
$section.getEntitiesOfType("no_redaction_indicator")
Stream.concat(
$table.getEntitiesOfTypeInSameRow("vertebrate", entity).stream(),
$table.getEntitiesOfTypeInSameRow("no_redaction_indicator", entity).stream()).toList()
);
});
end
@ -250,20 +252,22 @@ rule "CBI.5.0: Redact Names and Addresses if no_redaction_indicator but also red
rule "CBI.5.1: Redact Names and Addresses if no_redaction_indicator but also redaction_indicator is found in table row"
when
$table: Table(hasEntitiesOfType("no_redaction_indicator"), hasEntitiesOfType("redaction_indicator"), hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address"))
TableCell($row: row) from $table.streamTableCellsWhichContainType("redaction_indicator").toList()
TableCell(row == $row) from $table.streamTableCellsWhichContainType("no_redaction_indicator").toList()
$tableCell: TableCell(row == $row) from $table.streamTableCells().toList()
$entity: TextEntity(type() == "CBI_author" || type() == "CBI_address", active()) from $tableCell.getEntities()
$table: Table(hasEntitiesOfType("no_redaction_indicator"),
hasEntitiesOfType("redaction_indicator"),
(hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address")))
then
$entity.applyWithReferences(
$table.streamEntitiesWhereRowContainsEntitiesOfType(List.of("redaction_indicator", "no_redaction_indicator"))
.filter(entity -> entity.getType().equals("CBI_author") || entity.getType().equals("CBI_address"))
.forEach(entity -> {
entity.applyWithReferences(
"CBI.5.1",
"no_redaction_indicator but also redaction_indicator found",
"Reg (EC) No 1107/2009 Art. 63 (2g)",
Stream.concat(
$table.getEntitiesOfTypeInSameRow("redaction_indicator", $entity).stream(),
$table.getEntitiesOfTypeInSameRow("no_redaction_indicator", $entity).stream()).toList()
$table.getEntitiesOfTypeInSameRow("redaction_indicator", entity).stream(),
$table.getEntitiesOfTypeInSameRow("no_redaction_indicator", entity).stream()).toList()
);
});
end
@ -353,17 +357,18 @@ rule "CBI.8.0: Redacted because Section contains must_redact entity"
rule "CBI.8.1: Redacted because table row contains must_redact entity"
when
$table: Table(hasEntitiesOfType("must_redact"), hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address"))
$cellsWithMustRedact: TableCell() from $table.streamTableCellsWhichContainType("must_redact").toList()
$tableCell: TableCell(row == $cellsWithMustRedact.row) from $table.streamTableCells().toList()
$authorOrAddress: TextEntity(type() == "CBI_author" || type() == "CBI_address", active()) from $tableCell.getEntities()
$table: Table(hasEntitiesOfType("must_redact"), (hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address")))
then
$authorOrAddress.applyWithReferences(
"CBI.8.1",
"Must_redact found",
"Reg (EC) No 1107/2009 Art. 63 (2g)",
$table.getEntitiesOfTypeInSameRow("must_redact", $authorOrAddress)
);
$table.streamEntitiesWhereRowContainsEntitiesOfType(List.of("must_redact"))
.filter(entity -> entity.getType().equals("CBI_author") || entity.getType().equals("CBI_address"))
.forEach(entity -> {
entity.applyWithReferences(
"CBI.8.1",
"Must_redact found",
"Reg (EC) No 1107/2009 Art. 63 (2g)",
$table.getEntitiesOfTypeInSameRow("must_redact", entity)
);
});
end
@ -442,15 +447,13 @@ rule "CBI.12.0: Redact and recommend TableCell with header 'Author' or 'Author(s
$table: Table(hasHeader("Author(s)") || hasHeader("Author"), hasHeaderIgnoreCase("Vertebrate Study Y/N"))
TableCell(header, containsAnyStringIgnoreCase("Author", "Author(s)"), $authorCol: col) from $table.streamHeaders().toList()
TableCell(header, containsStringIgnoreCase("Vertebrate study Y/N"), $vertebrateCol: col) from $table.streamHeaders().toList()
TableCell(!header, containsAnyString("Yes", "Y"), $rowWithYes: row) from $table.streamCol($vertebrateCol).toList()
$authorCell: TableCell(row == $rowWithYes) from $table.streamCol($authorCol).toList()
$rowCell: TableCell(!header, containsAnyString("Yes", "Y"), $rowWithYes: row) from $table.streamCol($vertebrateCol).toList()
TableCell(row == $rowWithYes) from $table.streamCol($authorCol).toList()
then
entityCreationService.bySemanticNode($authorCell, "CBI_author", EntityType.ENTITY)
.ifPresent(authorEntity -> {
authorEntity.redact("CBI.12.0", "Redacted because it's row belongs to a vertebrate study", "Article 39(e)(3) of Regulation (EC) No 178/2002");
dictionary.addMultipleAuthorsAsRecommendation(authorEntity);
});
entityCreationService.bySemanticNode($rowCell, "must_redact", EntityType.HINT)
.ifPresent(yesEntity -> {
yesEntity.skip("CBI.12.0", "must_redact");
});
end
rule "CBI.12.1: Redact and recommend TableCell with header 'Author' or 'Author(s)' and header 'Vertebrate study Y/N' with value 'Yes' (vertebrate study)"