RED-6807: adapted all RM rules

RED-6807: updated RM and DM rules
* changed typos * added rules * fixed bugs
2023-10-16 20:14:55 +02:00 · 2023-10-16 17:34:57 +02:00 · 2023-10-16 17:34:57 +02:00
11 changed files with 309 additions and 173 deletions
--- a/redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/utils/RedactionSearchUtility.java
+++ b/redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/utils/RedactionSearchUtility.java
@ -132,6 +132,12 @@ public class RedactionSearchUtility {
        return getTextRangesByPatternWithLineBreaks(textBlock, group, pattern);
    }
    public static List<TextRange> findTextRangesByRegexIgnoreCase(String regexPattern, TextBlock textBlock) {
        Pattern pattern = Patterns.getCompiledPattern(regexPattern, true);
        return getTextRangesByPattern(textBlock, 0, pattern);
    }
    public static List<TextRange> findTextRangesByRegexIgnoreCase(String regexPattern, int group, TextBlock textBlock) {
--- a/redaction-service-v1/redaction-service-server-v1/src/main/resources/drools/base_rules.drl
+++ b/redaction-service-v1/redaction-service-server-v1/src/main/resources/drools/base_rules.drl
@ -22,6 +22,7 @@ import com.iqser.red.service.redaction.v1.server.model.document.entity.MatchedRu
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.*;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.Section;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.Table;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.TableCell;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.SemanticNode;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.Document;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.Paragraph;
@ -73,7 +74,7 @@ query "getFileAttributes"
 //------------------------------------ Local dictionary search rules ------------------------------------
 // Rule unit: LocalDictionarySearch.0
-rule "LDS.0.0: run local dictionary search"
+rule "LDS.0.0: Run local dictionary search"
    agenda-group "LOCAL_DICTIONARY_ADDS"
    salience -999
    when
--- a/redaction-service-v1/redaction-service-server-v1/src/test/java/com/iqser/red/service/redaction/v1/server/drools/files/management/services/DroolsSyntaxValidationServiceTest.java
+++ b/redaction-service-v1/redaction-service-server-v1/src/test/java/com/iqser/red/service/redaction/v1/server/drools/files/management/services/DroolsSyntaxValidationServiceTest.java
@ -63,7 +63,7 @@ class DroolsSyntaxValidationServiceTest {
    void testAllRules() {
        DroolsSyntaxValidationService droolsSyntaxValidationService = new DroolsSyntaxValidationService(new KieContainerCreationService(rulesClient));
-        var rulesFile = new ClassPathResource("drools/all_rules.drl");
+        var rulesFile = new ClassPathResource("drools/all_redact_manager_rules.drl");
        String rulesString = new String(rulesFile.getInputStream().readAllBytes());
@ -216,8 +216,7 @@ class DroolsSyntaxValidationServiceTest {
        DroolsSyntaxValidationService droolsSyntaxValidationService = new DroolsSyntaxValidationService(new KieContainerCreationService(rulesClient));
-        List<String> ruleFiles = List.of("drools/rules.drl",
+        List<String> ruleFiles = List.of("drools/rules.drl", "drools/all_redact_manager_rules.drl",
                "drools/all_rules.drl",
                "drools/documine_flora.drl",
                "drools/manual_redaction_rules.drl",
                "drools/acceptance_rules.drl",
--- a/redaction-service-v1/redaction-service-server-v1/src/test/resources/drools/acceptance_rules.drl
+++ b/redaction-service-v1/redaction-service-server-v1/src/test/resources/drools/acceptance_rules.drl
@ -22,6 +22,7 @@ import com.iqser.red.service.redaction.v1.server.model.document.entity.MatchedRu
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.*;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.Section;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.Table;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.TableCell;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.SemanticNode;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.Document;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.Paragraph;
@ -752,7 +753,7 @@ rule "FA.1.0: remove duplicate FileAttributes"
 //------------------------------------ Local dictionary search rules ------------------------------------
 // Rule unit: LDS.0
-rule "LDS.0.0: run local dictionary search"
+rule "LDS.0.0: Run local dictionary search"
    agenda-group "LOCAL_DICTIONARY_ADDS"
    salience -999
    when
--- a/redaction-service-v1/redaction-service-server-v1/src/test/resources/drools/adama-pilot.drl
+++ b/redaction-service-v1/redaction-service-server-v1/src/test/resources/drools/adama-pilot.drl
@ -902,7 +902,7 @@ rule "FA.1.0: remove duplicate FileAttributes"
 // Rule unit: LDS.0
-rule "LDS.0.0: run local dictionary search"
+rule "LDS.0.0: Run local dictionary search"
    agenda-group "LOCAL_DICTIONARY_ADDS"
    salience -999
    when
--- a/redaction-service-v1/redaction-service-server-v1/src/test/resources/drools/all_redact_manager_rules.drl
+++ b/redaction-service-v1/redaction-service-server-v1/src/test/resources/drools/all_redact_manager_rules.drl
@ -22,6 +22,7 @@ import com.iqser.red.service.redaction.v1.server.model.document.entity.MatchedRu
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.*;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.Section;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.Table;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.TableCell;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.SemanticNode;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.Document;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.Paragraph;
@ -94,25 +95,25 @@ rule "SYN.1.0: Recommend CTL/BL laboratory that start with BL or CTL"
 //------------------------------------ CBI rules ------------------------------------
 // Rule unit: CBI.0
-rule "CBI.0.0: Redact CBI Authors (Non Vertebrate Study)"
+rule "CBI.0.0: Redact CBI Authors (non vertebrate Study)"
    when
        not FileAttribute(label == "Vertebrate Study", value.toLowerCase() == "yes")
        $entity: TextEntity(type == "CBI_author", dictionaryEntry)
    then
-        $entity.apply("CBI.0.0", "Author found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
+        $entity.redact("CBI.0.0", "Author found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
    end
-rule "CBI.0.1: Redact CBI Authors (Vertebrate Study)"
+rule "CBI.0.1: Redact CBI Authors (vertebrate Study)"
    when
        FileAttribute(label == "Vertebrate Study", value.toLowerCase() == "yes")
        $entity: TextEntity(type == "CBI_author", dictionaryEntry)
    then
-        $entity.apply("CBI.0.1", "Author found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
+        $entity.redact("CBI.0.1", "Author found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
    end
 // Rule unit: CBI.1
-rule "CBI.1.0: Don't redact CBI Address (Non Vertebrate Study)"
+rule "CBI.1.0: Do not redact CBI Address (non vertebrate Study)"
    when
        not FileAttribute(label == "Vertebrate Study", value.toLowerCase() == "yes")
        $entity: TextEntity(type == "CBI_address", dictionaryEntry)
@ -120,17 +121,17 @@ rule "CBI.1.0: Don't redact CBI Address (Non Vertebrate Study)"
        $entity.skip("CBI.1.0", "Address found for Non Vertebrate Study");
    end
-rule "CBI.1.1: Redact CBI Address (Vertebrate Study)"
+rule "CBI.1.1: Redact CBI Address (vertebrate Study)"
    when
        FileAttribute(label == "Vertebrate Study", value.toLowerCase() == "yes")
        $entity: TextEntity(type == "CBI_address", dictionaryEntry)
    then
-        $entity.apply("CBI.1.1", "Address found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
+        $entity.redact("CBI.1.1", "Address found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
    end
 // Rule unit: CBI.2
-rule "CBI.2.0: Don't redact genitive CBI_author"
+rule "CBI.2.0: Do not redact genitive CBI Author"
    when
        $entity: TextEntity(type == "CBI_author", anyMatch(textAfter, "['’’'ʼˈ´`‘′ʻ’']s"), applied())
    then
@ -140,7 +141,7 @@ rule "CBI.2.0: Don't redact genitive CBI_author"
 // Rule unit: CBI.3
-rule "CBI.3.0: Redacted because Section contains Vertebrate"
+rule "CBI.3.0: Redacted because Section contains a vertebrate"
    when
        $section: Section(!hasTables(), hasEntitiesOfType("vertebrate"), (hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address")))
    then
@ -155,7 +156,7 @@ rule "CBI.3.0: Redacted because Section contains Vertebrate"
            });
    end
-rule "CBI.3.1: Redacted because Table Row contains Vertebrate"
+rule "CBI.3.1: Redacted because table row contains a vertebrate"
    when
        $table: Table(hasEntitiesOfType("vertebrate"), (hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address")))
    then
@ -171,7 +172,7 @@ rule "CBI.3.1: Redacted because Table Row contains Vertebrate"
            });
    end
-rule "CBI.3.2: Don't redact because Section doesn't contain Vertebrate"
+rule "CBI.3.2: Do not redact because Section does not contain a vertebrate"
    when
        $section: Section(!hasTables(), !hasEntitiesOfType("vertebrate"), (hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address")))
    then
@ -179,7 +180,7 @@ rule "CBI.3.2: Don't redact because Section doesn't contain Vertebrate"
            .forEach(entity -> entity.skip("CBI.3.2", "No vertebrate found"));
    end
-rule "CBI.3.3: Dont redact because Table Row doesn't contain Vertebrate"
+rule "CBI.3.3: Do not redact because table row does not contain a vertebrate"
    when
        $table: Table(hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address"))
    then
@ -190,7 +191,7 @@ rule "CBI.3.3: Dont redact because Table Row doesn't contain Vertebrate"
 // Rule unit: CBI.4
-rule "CBI.4.0: Dont redact Names and Addresses if no_redaction_indicator is found in Section"
+rule "CBI.4.0: Do not redact Names and Addresses if no_redaction_indicator is found in Section"
    when
        $section: Section(!hasTables(),
                          hasEntitiesOfType("vertebrate"),
@ -207,7 +208,7 @@ rule "CBI.4.0: Dont redact Names and Addresses if no_redaction_indicator is foun
            });
    end
-rule "CBI.4.1: Dont redact Names and Addresses if no_redaction_indicator is found in Table Row"
+rule "CBI.4.1: Do not redact Names and Addresses if no_redaction_indicator is found in table row"
    when
        $table: Table(hasEntitiesOfType("no_redaction_indicator"),
                      hasEntitiesOfType("vertebrate"),
@ -228,7 +229,7 @@ rule "CBI.4.1: Dont redact Names and Addresses if no_redaction_indicator is foun
 // Rule unit: CBI.5
-rule "CBI.5.0: Redact Names and Addresses if no_redaction_indicator but also redaction_indicator is found in section"
+rule "CBI.5.0: Redact Names and Addresses if no_redaction_indicator but also redaction_indicator is found in Section"
    when
        $section: Section(!hasTables(),
                          hasEntitiesOfType("redaction_indicator"),
@ -248,7 +249,7 @@ rule "CBI.5.0: Redact Names and Addresses if no_redaction_indicator but also red
            });
    end
-rule "CBI.5.1: Redact Names and Addresses if no_redaction_indicator but also redaction_indicator is found in Table Row"
+rule "CBI.5.1: Redact Names and Addresses if no_redaction_indicator but also redaction_indicator is found in table row"
    when
        $table: Table(hasEntitiesOfType("no_redaction_indicator"),
                      hasEntitiesOfType("redaction_indicator"),
@ -270,7 +271,7 @@ rule "CBI.5.1: Redact Names and Addresses if no_redaction_indicator but also red
 // Rule unit: CBI.6
-rule "CBI.6.0: Don't redact Names and Addresses if vertebrate but also published_information is found in Section"
+rule "CBI.6.0: Do not redact Names and Addresses if vertebrate but also published_information is found in Section"
    when
        $section: Section(!hasTables(),
                          hasEntitiesOfType("vertebrate"),
@ -289,7 +290,7 @@ rule "CBI.6.0: Don't redact Names and Addresses if vertebrate but also published
            });
    end
-rule "CBI.6.1: Don't redact Names and Addresses if vertebrate but also published_information is found in Table Row"
+rule "CBI.6.1: Do not redact Names and Addresses if vertebrate but also published_information is found in table row"
    when
        $table: Table(hasEntitiesOfType("vertebrate"),
                      hasEntitiesOfType("published_information"),
@ -310,7 +311,7 @@ rule "CBI.6.1: Don't redact Names and Addresses if vertebrate but also published
 // Rule unit: CBI.7
-rule "CBI.7.0: Do not redact Names and Addresses if published information found in section without tables"
+rule "CBI.7.0: Do not redact Names and Addresses if published information found in Section without tables"
    when
        $section: Section(!hasTables(),
                          hasEntitiesOfType("published_information"),
@ -358,7 +359,7 @@ rule "CBI.8.0: Redacted because Section contains must_redact entity"
            });
    end
-rule "CBI.8.1: Redacted because Table Row contains must_redact entity"
+rule "CBI.8.1: Redacted because table row contains must_redact entity"
    when
        $table: Table(hasEntitiesOfType("must_redact"), (hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address")))
    then
@ -376,7 +377,7 @@ rule "CBI.8.1: Redacted because Table Row contains must_redact entity"
 // Rule unit: CBI.9
-rule "CBI.9.0: Redact all Cell's with Header Author(s) as CBI_author (non vertebrate study)"
+rule "CBI.9.0: Redact all cells with Header Author(s) as CBI_author (non vertebrate study)"
    agenda-group "LOCAL_DICTIONARY_ADDS"
    when
        not FileAttribute(label == "Vertebrate Study", value.toLowerCase() == "yes")
@ -386,10 +387,10 @@ rule "CBI.9.0: Redact all Cell's with Header Author(s) as CBI_author (non verteb
            .map(tableCell -> entityCreationService.bySemanticNode(tableCell, "CBI_author", EntityType.ENTITY))
            .filter(Optional::isPresent)
            .map(Optional::get)
-            .forEach(redactionEntity -> redactionEntity.apply("CBI.9.0", "Author(s) found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
+            .forEach(redactionEntity -> redactionEntity.redact("CBI.9.0", "Author(s) found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
    end
-rule "CBI.9.1: Redact all Cell's with Header Author as CBI_author (non vertebrate study)"
+rule "CBI.9.1: Redact all cells with Header Author as CBI_author (non vertebrate study)"
    agenda-group "LOCAL_DICTIONARY_ADDS"
    when
        not FileAttribute(label == "Vertebrate Study", value.toLowerCase() == "yes")
@ -399,12 +400,12 @@ rule "CBI.9.1: Redact all Cell's with Header Author as CBI_author (non vertebrat
            .map(tableCell -> entityCreationService.bySemanticNode(tableCell, "CBI_author", EntityType.ENTITY))
            .filter(Optional::isPresent)
            .map(Optional::get)
-            .forEach(redactionEntity -> redactionEntity.apply("CBI.9.1", "Author found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
+            .forEach(redactionEntity -> redactionEntity.redact("CBI.9.1", "Author found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
    end
 // Rule unit: CBI.10
-rule "CBI.10.0: Redact all Cell's with Header Author(s) as CBI_author (vertebrate study)"
+rule "CBI.10.0: Redact all cells with Header Author(s) as CBI_author (vertebrate study)"
    agenda-group "LOCAL_DICTIONARY_ADDS"
    when
        FileAttribute(label == "Vertebrate Study", value.toLowerCase() == "yes")
@ -414,10 +415,10 @@ rule "CBI.10.0: Redact all Cell's with Header Author(s) as CBI_author (vertebrat
            .map(tableCell -> entityCreationService.bySemanticNode(tableCell, "CBI_author", EntityType.ENTITY))
            .filter(Optional::isPresent)
            .map(Optional::get)
-            .forEach(redactionEntity -> redactionEntity.apply("CBI.10.0", "Author(s) found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
+            .forEach(redactionEntity -> redactionEntity.redact("CBI.10.0", "Author(s) found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
    end
-rule "CBI.10.1: Redact all Cell's with Header Author as CBI_author (vertebrate study)"
+rule "CBI.10.1: Redact all cells with Header Author as CBI_author (vertebrate study)"
    agenda-group "LOCAL_DICTIONARY_ADDS"
    when
        FileAttribute(label == "Vertebrate Study", value.toLowerCase() == "yes")
@ -427,7 +428,7 @@ rule "CBI.10.1: Redact all Cell's with Header Author as CBI_author (vertebrate s
            .map(tableCell -> entityCreationService.bySemanticNode(tableCell, "CBI_author", EntityType.ENTITY))
            .filter(Optional::isPresent)
            .map(Optional::get)
-            .forEach(redactionEntity -> redactionEntity.apply("CBI.10.1", "Author found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
+            .forEach(redactionEntity -> redactionEntity.redact("CBI.10.1", "Author found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
    end
@ -443,7 +444,7 @@ rule "CBI.11.0: Recommend all CBI_author entities in Table with Vertebrate Study
 // Rule unit: CBI.12
-rule "CBI.12.0: Add all Cell's with Header Author(s) as CBI_author"
+rule "CBI.12.0: Add all cells with Header Author(s) as CBI_author"
    salience 1
    when
        $table: Table(hasHeader("Author(s)") || hasHeader("Author"))
@ -458,7 +459,7 @@ rule "CBI.12.0: Add all Cell's with Header Author(s) as CBI_author"
            .forEach(redactionEntity -> redactionEntity.skip("CBI.12.0", "Author(s) header found"));
    end
-rule "CBI.12.1: Dont redact CBI_author, if its row contains a cell with header \"Vertebrate study Y/N\" and value No"
+rule "CBI.12.1: Do not redact CBI_author, if its row contains a cell with header \"Vertebrate study Y/N\" and value No"
    when
        $table: Table(hasRowWithHeaderAndValue("Vertebrate study Y/N", "N") || hasRowWithHeaderAndValue("Vertebrate study Y/N", "No"))
    then
@ -473,12 +474,12 @@ rule "CBI.12.2: Redact CBI_author, if its row contains a cell with header \"Vert
    then
        $table.streamEntitiesWhereRowHasHeaderAndAnyValue("Vertebrate study Y/N", List.of("Y", "Yes"))
            .filter(redactionEntity -> redactionEntity.isAnyType(List.of("CBI_author", "CBI_address")))
-            .forEach(authorEntity -> authorEntity.apply("CBI.12.2", "Redacted because it's row belongs to a vertebrate study", "Reg (EC) No 1107/2009 Art. 63 (2g)"));
+            .forEach(authorEntity -> authorEntity.redact("CBI.12.2", "Redacted because it's row belongs to a vertebrate study", "Reg (EC) No 1107/2009 Art. 63 (2g)"));
    end
 // Rule unit: CBI.13
-rule "CBI.13.0: Ignore CBI Address Recommendations"
+rule "CBI.13.0: Ignore CBI Address recommendations"
    when
        not FileAttribute(label == "Vertebrate Study", value.toLowerCase() == "yes")
        $entity: TextEntity(type == "CBI_address", entityType == EntityType.RECOMMENDATION)
@ -493,7 +494,7 @@ rule "CBI.14.0: Redact CBI_sponsor entities if preceded by \"batches produced at
    when
        $sponsorEntity: TextEntity(type == "CBI_sponsor", textBefore.contains("batches produced at"))
    then
-        $sponsorEntity.apply("CBI.14.0", "Redacted because it represents a sponsor company", "Reg (EC) No 1107/2009 Art. 63 (2g)");
+        $sponsorEntity.redact("CBI.14.0", "Redacted because it represents a sponsor company", "Reg (EC) No 1107/2009 Art. 63 (2g)");
    end
@ -518,7 +519,7 @@ rule "CBI.15.0: Redact row if row contains \"determination of residues\" and liv
            .toList();
        $section.getEntitiesOfType(List.of($keyword, $residueKeyword))
-            .forEach(redactionEntity -> redactionEntity.apply("CBI.15.0", "Determination of residues and keyword \"" + $keyword + "\" was found.", "Reg (EC) No 1107/2009 Art. 63 (2g)"));
+            .forEach(redactionEntity -> redactionEntity.redact("CBI.15.0", "Determination of residues and keyword \"" + $keyword + "\" was found.", "Reg (EC) No 1107/2009 Art. 63 (2g)"));
    end
 rule "CBI.15.1: Redact CBI_author and CBI_address if row contains \"determination of residues\" and livestock keyword"
@ -540,12 +541,12 @@ rule "CBI.15.1: Redact CBI_author and CBI_address if row contains \"determinatio
        $table.streamEntitiesWhereRowContainsStringsIgnoreCase(List.of($keyword, $residueKeyword))
            .filter(redactionEntity -> redactionEntity.isAnyType(List.of("CBI_author", "CBI_address")))
-            .forEach(redactionEntity -> redactionEntity.apply("CBI.15.1", "Determination of residues and keyword \"" + $keyword + "\" was found.", "Reg (EC) No 1107/2009 Art. 63 (2g)"));
+            .forEach(redactionEntity -> redactionEntity.redact("CBI.15.1", "Determination of residues and keyword \"" + $keyword + "\" was found.", "Reg (EC) No 1107/2009 Art. 63 (2g)"));
    end
 // Rule unit: CBI.16
-rule "CBI.16.0: Add CBI_author with \"et al.\" Regex (non vertebrate study)"
+rule "CBI.16.0: Add CBI_author with \"et al.\" RegEx (non vertebrate study)"
    agenda-group "LOCAL_DICTIONARY_ADDS"
    when
        not FileAttribute(label == "Vertebrate Study", value.toLowerCase() == "yes")
@ -553,12 +554,12 @@ rule "CBI.16.0: Add CBI_author with \"et al.\" Regex (non vertebrate study)"
    then
        entityCreationService.byRegex("\\b([A-ZÄÖÜ][^\\s\\.,]+( [A-ZÄÖÜ]{1,2}\\.?)?( ?[A-ZÄÖÜ]\\.?)?) et al\\.?", "CBI_author", EntityType.ENTITY, 1, $section)
            .forEach(entity -> {
-                entity.apply("CBI.16.0", "Author found by \"et al\" regex", "Article 39(e)(3) of Regulation (EC) No 178/2002");
+                entity.redact("CBI.16.0", "Author found by \"et al\" regex", "Article 39(e)(3) of Regulation (EC) No 178/2002");
                dictionary.recommendEverywhere(entity);
            });
    end
-rule "CBI.16.1: Add CBI_author with \"et al.\" Regex (vertebrate study)"
+rule "CBI.16.1: Add CBI_author with \"et al.\" RegEx (vertebrate study)"
    agenda-group "LOCAL_DICTIONARY_ADDS"
    when
        FileAttribute(label == "Vertebrate Study", value.toLowerCase() == "yes")
@ -566,7 +567,7 @@ rule "CBI.16.1: Add CBI_author with \"et al.\" Regex (vertebrate study)"
    then
        entityCreationService.byRegex("\\b([A-ZÄÖÜ][^\\s\\.,]+( [A-ZÄÖÜ]{1,2}\\.?)?( ?[A-ZÄÖÜ]\\.?)?) et al\\.?", "CBI_author", EntityType.ENTITY, 1, $section)
            .forEach(entity -> {
-                entity.apply("CBI.16.1", "Author found by \"et al\" regex", "Article 39(e)(2) of Regulation (EC) No 178/2002");
+                entity.redact("CBI.16.1", "Author found by \"et al\" regex", "Article 39(e)(2) of Regulation (EC) No 178/2002");
                dictionary.recommendEverywhere(entity);
            });
    end
@ -645,11 +646,48 @@ rule "CBI.20.1: Redact between \"PERFORMING LABORATORY\" and \"LABORATORY PROJEC
    then
         entityCreationService.betweenStrings("PERFORMING LABORATORY:", "LABORATORY PROJECT ID:", "CBI_address", EntityType.ENTITY, $section)
         .forEach(laboratoryEntity -> {
-             laboratoryEntity.apply("CBI.20.1", "PERFORMING LABORATORY was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
+             laboratoryEntity.redact("CBI.20.1", "PERFORMING LABORATORY was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
             dictionary.recommendEverywhere(laboratoryEntity);
         });
    end
 // Rule unit: CBI.21
 rule "CBI.21.0: Redact short Authors section (non vertebrate study)"
    when
        not FileAttribute(label == "Vertebrate Study", value == "Yes")
        $section: Section(containsAnyStringIgnoreCase("author(s)", "author", "authors"), length() < 50, getTreeId().get(0) <= 20) //TODO: evaluate the reason of this rule
        not TextEntity(type == "CBI_author", engines contains Engine.NER) from $section.getEntities()
    then
        entityCreationService.byRegexIgnoreCase("(?<=author\\(?s\\)?\\s\\n?)([\\p{Lu}\\p{L} ]{5,15}(,|\\n)?){1,3}", "CBI_author", EntityType.ENTITY, $section)
            .forEach(entity -> {
                entity.redact("CBI.21.0", "AUTHOR(S) was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
            });
    end
 rule "CBI.21.1: Redact short Authors section (vertebrate study)"
    when
        FileAttribute(label == "Vertebrate Study", value == "Yes")
        $section: Section(containsAnyStringIgnoreCase("author(s)", "author", "authors"), length() < 50, getTreeId().get(0) <= 20) //TODO: evaluate the reason of this rule
        not TextEntity(type == "CBI_author", engines contains Engine.NER) from $section.getEntities()
    then
        entityCreationService.byRegexIgnoreCase("(?<=author\\(?s\\)?\\s\\n?)([\\p{Lu}\\p{L} ]{5,15}(,|\\n)?){1,3}", "CBI_author", EntityType.ENTITY, $section)
            .forEach(entity -> {
                entity.redact("CBI.21.1", "AUTHOR(S) was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
            });
    end
 // Rule unit: CBI.22
 rule "CBI.22.0: Redact Addresses in Reference Tables for vertebrate studies in non-vertebrate documents"
    when
        not FileAttribute(label == "Vertebrate Study", value == "Yes")
        $table: Table(hasHeader("Vertebrate study Y/N"), hasRowWithHeaderAndValue("Vertebrate study Y/N", "Y") || hasRowWithHeaderAndValue("Vertebrate study Y/N", "Yes"))
    then
        $table.streamEntitiesWhereRowHasHeaderAndAnyValue("Vertebrate study Y/N", List.of("Y", "Yes"))
                           .filter(redactionEntity -> redactionEntity.isType("CBI_address"))
                           .forEach(authorEntity -> authorEntity.redact("CBI.22.0", "Redacted because row is a vertebrate study", "Reg (EC) No 1107/2009 Art. 63 (2g)"));
    end
 //------------------------------------ PII rules ------------------------------------
@ -659,7 +697,7 @@ rule "PII.0.0: Redact all PII (non vertebrate study)"
        not FileAttribute(label == "Vertebrate Study", value.toLowerCase() == "yes")
        $pii: TextEntity(type == "PII", dictionaryEntry)
    then
-        $pii.apply("PII.0.0", "Personal Information found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
+        $pii.redact("PII.0.0", "Personal Information found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
    end
 rule "PII.0.1: Redact all PII (vertebrate study)"
@ -667,7 +705,7 @@ rule "PII.0.1: Redact all PII (vertebrate study)"
        FileAttribute(label == "Vertebrate Study", value.toLowerCase() == "yes")
        $pii: TextEntity(type == "PII", dictionaryEntry)
    then
-        $pii.apply("PII.0.1", "Personal Information found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
+        $pii.redact("PII.0.1", "Personal Information found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
    end
@ -678,7 +716,7 @@ rule "PII.1.0: Redact Emails by RegEx (Non vertebrate study)"
        $section: Section(containsString("@"))
    then
        entityCreationService.byRegex("\\b([A-Za-z0-9._%+\\-]+@[A-Za-z0-9.\\-]+\\.[A-Za-z\\-]{1,23}[A-Za-z])\\b", "PII", EntityType.ENTITY, 1, $section)
-            .forEach(emailEntity -> emailEntity.apply("PII.1.0", "Found by Email Regex", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
+            .forEach(emailEntity -> emailEntity.redact("PII.1.0", "Found by Email Regex", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
    end
 rule "PII.1.1: Redact Emails by RegEx (vertebrate study)"
@ -687,7 +725,15 @@ rule "PII.1.1: Redact Emails by RegEx (vertebrate study)"
        $section: Section(containsString("@"))
    then
        entityCreationService.byRegex("\\b([A-Za-z0-9._%+\\-]+@[A-Za-z0-9.\\-]+\\.[A-Za-z\\-]{1,23}[A-Za-z])\\b", "PII", EntityType.ENTITY, 1, $section)
-            .forEach(emailEntity -> emailEntity.apply("PII.1.1", "Found by Email Regex", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
+            .forEach(emailEntity -> emailEntity.redact("PII.1.1", "Found by Email Regex", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
    end
 rule "PII.1.2: Redact typoed Emails with indicator"
    when
        $section: Section(containsString("@") || containsStringIgnoreCase("mail"))
    then
        entityCreationService.byRegexIgnoreCase("mail[:\\.\\s]{1,2}([\\w\\/\\-\\{\\(\\. ]{3,20}(@|a|f)\\s?[\\w\\/\\-\\{\\(\\. ]{3,20}(\\. \\w{2,4}\\b|\\.\\B|\\.\\w{1,4}\\b))", "PII", EntityType.ENTITY, $section)
            .forEach(emailEntity -> emailEntity.redact("PII.1.2", "Personal information found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
    end
@ -707,7 +753,7 @@ rule "PII.2.0: Redact Phone and Fax by RegEx (non vertebrate study)"
                              containsString("Fer"))
    then
        entityCreationService.byRegexIgnoreCase("\\b(contact|telephone|phone|ph\\.|fax|tel|ter|mobile|fel|fer)[a-zA-Z\\s]{0,10}[:.\\s]{0,3}([\\+\\d\\(][\\s\\d\\(\\)\\-\\/\\.]{4,100}\\d)\\b", "PII", EntityType.ENTITY, 2, $section)
-            .forEach(contactEntity -> contactEntity.apply("PII.2.0", "Found by Phone and Fax Regex", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
+            .forEach(contactEntity -> contactEntity.redact("PII.2.0", "Found by Phone and Fax Regex", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
    end
 rule "PII.2.1: Redact Phone and Fax by RegEx (vertebrate study)"
@ -725,7 +771,15 @@ rule "PII.2.1: Redact Phone and Fax by RegEx (vertebrate study)"
                              containsString("Fer"))
    then
        entityCreationService.byRegexIgnoreCase("\\b(contact|telephone|phone|ph\\.|fax|tel|ter|mobile|fel|fer)[a-zA-Z\\s]{0,10}[:.\\s]{0,3}([\\+\\d\\(][\\s\\d\\(\\)\\-\\/\\.]{4,100}\\d)\\b", "PII", EntityType.ENTITY, 2, $section)
-            .forEach(contactEntity -> contactEntity.apply("PII.2.1", "Found by Phone and Fax Regex", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
+            .forEach(contactEntity -> contactEntity.redact("PII.2.1", "Found by Phone and Fax Regex", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
    end
 rule "PII.2.2: Redact phone numbers without indicators"
    when
        $section: Section(containsString("+"))
    then
        entityCreationService.byRegex("(\\+[\\dO]{1,2} )(\\([\\dO]{1,3}\\))?[\\d\\-O ]{8,15}", "PII", EntityType.ENTITY, $section)
            .forEach(entity -> entity.redact("PII.2.2", "Personal information found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
    end
@ -736,7 +790,7 @@ rule "PII.3.0: Redact telephone numbers by RegEx (Non vertebrate study)"
        $section: Section(matchesRegex("[+]\\d{1,}"))
    then
        entityCreationService.byRegex("((([+]\\d{1,3} (\\d{7,12})\\b)|([+]\\d{1,3}(\\d{3,12})\\b|[+]\\d{1,3}([ -]\\(?\\d{1,6}\\)?){2,4})|[+]\\d{1,3} ?((\\d{2,6}\\)?)([ -]\\d{2,6}){1,4}))(-\\d{1,3})?\\b)", "PII", EntityType.ENTITY, 1, $section)
-        .forEach(entity -> entity.apply("PII.3.0", "Telephone number found by regex", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
+        .forEach(entity -> entity.redact("PII.3.0", "Telephone number found by regex", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
    end
 rule "PII.3.1: Redact telephone numbers by RegEx (vertebrate study)"
@ -745,10 +799,9 @@ rule "PII.3.1: Redact telephone numbers by RegEx (vertebrate study)"
        $section: Section(matchesRegex("[+]\\d{1,}"))
    then
        entityCreationService.byRegex("((([+]\\d{1,3} (\\d{7,12})\\b)|([+]\\d{1,3}(\\d{3,12})\\b|[+]\\d{1,3}([ -]\\(?\\d{1,6}\\)?){2,4})|[+]\\d{1,3} ?((\\d{2,6}\\)?)([ -]\\d{2,6}){1,4}))(-\\d{1,3})?\\b)", "PII", EntityType.ENTITY, 1, $section)
-        .forEach(entity -> entity.apply("PII.3.1", "Telephone number found by regex", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
+        .forEach(entity -> entity.redact("PII.3.1", "Telephone number found by regex", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
    end
 // Rule unit: PII.4
 rule "PII.4.0: Redact line after contact information keywords (non vertebrate study)"
    when
@ -775,12 +828,12 @@ rule "PII.4.0: Redact line after contact information keywords (non vertebrate st
        $section: Section(containsString($contactKeyword))
    then
        entityCreationService.lineAfterString($contactKeyword, "PII", EntityType.ENTITY, $section)
-            .forEach(contactEntity -> contactEntity.apply("PII.4.0", "Found after \"" + $contactKeyword + "\" contact keyword", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
+            .forEach(contactEntity -> contactEntity.redact("PII.4.0", "Found after \"" + $contactKeyword + "\" contact keyword", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
    end
-rule "PII.4.1: Redact line after contact information keywords (non vertebrate study)"
+rule "PII.4.1: Redact line after contact information keywords (vertebrate study)"
    when
-        not FileAttribute(label == "Vertebrate Study", value.toLowerCase() == "yes")
+        FileAttribute(label == "Vertebrate Study", value.toLowerCase() == "yes")
        $contactKeyword: String() from List.of("Contact point:",
                                         "Contact:",
                                         "Alternative contact:",
@ -803,7 +856,7 @@ rule "PII.4.1: Redact line after contact information keywords (non vertebrate st
        $section: Section(containsString($contactKeyword))
    then
        entityCreationService.lineAfterString($contactKeyword, "PII", EntityType.ENTITY, $section)
-            .forEach(contactEntity -> contactEntity.apply("PII.4.1", "Found after \"" + $contactKeyword + "\" contact keyword", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
+            .forEach(contactEntity -> contactEntity.redact("PII.4.1", "Found after \"" + $contactKeyword + "\" contact keyword", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
    end
@ -818,7 +871,7 @@ rule "PII.5.0: Redact line after contact information keywords reduced (non verte
        $section: Section(containsString($contactKeyword))
    then
        entityCreationService.lineAfterString($contactKeyword, "PII", EntityType.ENTITY, $section)
-            .forEach(contactEntity -> contactEntity.apply("PII.5.0", "Found after \"" + $contactKeyword + "\" contact keyword", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
+            .forEach(contactEntity -> contactEntity.redact("PII.5.0", "Found after \"" + $contactKeyword + "\" contact keyword", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
    end
 rule "PII.5.1: Redact line after contact information keywords reduced (Vertebrate study)"
@ -831,12 +884,12 @@ rule "PII.5.1: Redact line after contact information keywords reduced (Vertebrat
        $section: Section(containsString($contactKeyword))
    then
        entityCreationService.lineAfterString($contactKeyword, "PII", EntityType.ENTITY, $section)
-            .forEach(contactEntity -> contactEntity.apply("PII.5.1", "Found after \"" + $contactKeyword + "\" contact keyword", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
+            .forEach(contactEntity -> contactEntity.redact("PII.5.1", "Found after \"" + $contactKeyword + "\" contact keyword", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
    end
 // Rule unit: PII.6
-rule "PII.6.0: redact line between contact keywords (non vertebrate study)"
+rule "PII.6.0: Redact line between contact keywords (non vertebrate study)"
    when
        not FileAttribute(label == "Vertebrate Study", value.toLowerCase() == "yes")
        $section: Section((containsString("No:") && containsString("Fax")) || (containsString("Contact:") && containsString("Tel")))
@ -845,10 +898,10 @@ rule "PII.6.0: redact line between contact keywords (non vertebrate study)"
            entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
            entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
        )
-            .forEach(contactEntity -> contactEntity.apply("PII.6.0", "Found between contact keywords", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
+            .forEach(contactEntity -> contactEntity.redact("PII.6.0", "Found between contact keywords", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
    end
-rule "PII.6.1: redact line between contact keywords"
+rule "PII.6.1: Redact line between contact keywords (vertebrate study)"
    when
        FileAttribute(label == "Vertebrate Study", value.toLowerCase() == "yes")
        $section: Section((containsString("No:") && containsString("Fax")) || (containsString("Contact:") && containsString("Tel")))
@ -857,7 +910,7 @@ rule "PII.6.1: redact line between contact keywords"
            entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
            entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
        )
-            .forEach(contactEntity -> contactEntity.apply("PII.6.1", "Found between contact keywords", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
+            .forEach(contactEntity -> contactEntity.redact("PII.6.1", "Found between contact keywords", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
    end
@ -877,10 +930,10 @@ rule "PII.7.0: Redact contact information if applicant is found (non vertebrate
                 entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
                 entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
             ))
-            .forEach(entity -> entity.apply("PII.7.0", "Applicant information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
+            .forEach(entity -> entity.redact("PII.7.0", "Applicant information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
    end
-rule "PII.7.1: Redact contact information if applicant is found (non vertebrate study)"
+rule "PII.7.1: Redact contact information if applicant is found (vertebrate study)"
    when
        FileAttribute(label == "Vertebrate Study", value.toLowerCase() == "yes")
        $section: Section(getHeadline().containsString("applicant") ||
@ -895,12 +948,12 @@ rule "PII.7.1: Redact contact information if applicant is found (non vertebrate
                 entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
                 entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
             ))
-            .forEach(entity -> entity.apply("PII.7.1", "Applicant information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
+            .forEach(entity -> entity.redact("PII.7.1", "Applicant information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
    end
 // Rule unit: PII.8
-rule "PII.8.0: Redact contact information if producer is found"
+rule "PII.8.0: Redact contact information if producer is found (non vertebrate study)"
    when
        not FileAttribute(label == "Vertebrate Study", value.toLowerCase() == "yes")
        $section: Section(containsStringIgnoreCase("producer of the plant protection") ||
@ -915,10 +968,10 @@ rule "PII.8.0: Redact contact information if producer is found"
                 entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
                 entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
             ))
-            .forEach(entity -> entity.apply("PII.8.0", "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
+            .forEach(entity -> entity.redact("PII.8.0", "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
    end
-rule "PII.8.1: Redact contact information if producer is found"
+rule "PII.8.1: Redact contact information if producer is found (vertebrate study)"
    when
        FileAttribute(label == "Vertebrate Study", value.toLowerCase() == "yes")
        $section: Section(containsStringIgnoreCase("producer of the plant protection") ||
@ -933,54 +986,27 @@ rule "PII.8.1: Redact contact information if producer is found"
                 entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
                 entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
             ))
-            .forEach(entity -> entity.apply("PII.8.1", "Producer was found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
+            .forEach(entity -> entity.redact("PII.8.1", "Producer was found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
    end
 // Rule unit: PII.9
-rule "PII.9.0: Redact between \"AUTHOR(S)\" and \"COMPLETION DATE\" (non vertebrate study)"
+rule "PII.9.0: Redact between \"AUTHOR(S)\" and \"(STUDY) COMPLETION DATE\" (non vertebrate study)"
    when
        not FileAttribute(label == "Vertebrate Study", value.toLowerCase() == "yes")
-        $section: Section(!hasTables(), containsString("AUTHOR(S):"), containsString("COMPLETION DATE:"), !containsString("STUDY COMPLETION DATE:"))
+        $document: Document(containsStringIgnoreCase("AUTHOR(S)"), containsAnyStringIgnoreCase("COMPLETION DATE", "STUDY COMPLETION DATE"))
    then
-        entityCreationService.betweenStrings("AUTHOR(S):", "COMPLETION DATE:", "PII", EntityType.ENTITY, $section)
+        entityCreationService.shortestBetweenAnyStringIgnoreCase(List.of("AUTHOR(S)", "AUTHOR(S):"), List.of("COMPLETION DATE", "COMPLETION DATE:", "STUDY COMPLETION DATE", "STUDY COMPLETION DATE:"), "PII", EntityType.ENTITY, $document)
-         .forEach(authorEntity -> authorEntity.apply("PII.9.0", "AUTHOR(S) was found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
+         .forEach(authorEntity -> authorEntity.redact("PII.9.0", "AUTHOR(S) was found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
    end
-rule "PII.9.1: Redact between \"AUTHOR(S)\" and \"STUDY COMPLETION DATE\" (non vertebrate study)"
+rule "PII.9.1: Redact between \"AUTHOR(S)\" and \"(STUDY) COMPLETION DATE\" (vertebrate study)"
    when
        FileAttribute(label == "Vertebrate Study", value.toLowerCase() == "yes")
-        $section: Section(!hasTables(), containsString("AUTHOR(S):"), containsString("COMPLETION DATE:"), !containsString("STUDY COMPLETION DATE:"))
+        $document: Document(containsStringIgnoreCase("AUTHOR(S)"), containsAnyStringIgnoreCase("COMPLETION DATE", "STUDY COMPLETION DATE"))
    then
-        entityCreationService.betweenStrings("AUTHOR(S):", "COMPLETION DATE:", "PII", EntityType.ENTITY, $section)
+        entityCreationService.shortestBetweenAnyStringIgnoreCase(List.of("AUTHOR(S)", "AUTHOR(S):"), List.of("COMPLETION DATE", "COMPLETION DATE:", "STUDY COMPLETION DATE", "STUDY COMPLETION DATE:"), "PII", EntityType.ENTITY, $document)
-         .forEach(authorEntity -> authorEntity.apply("PII.9.1", "AUTHOR(S) was found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
+        .forEach(authorEntity -> authorEntity.redact("PII.9.1", "AUTHOR(S) was found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
    end
 rule "PII.9.2: Redact between \"AUTHOR(S)\" and \"COMPLETION DATE\" (non vertebrate study)"
    when
        not FileAttribute(label == "Vertebrate Study", value.toLowerCase() == "yes")
        $section: Section(!hasTables(), containsString("AUTHOR(S):"), containsString("STUDY COMPLETION DATE:"))
    then
        entityCreationService.betweenStrings("AUTHOR(S):", "STUDY COMPLETION DATE:", "PII", EntityType.ENTITY, $section)
         .forEach(authorEntity -> authorEntity.apply("PII.9.2", "AUTHOR(S) was found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
    end
 rule "PII.9.3: Redact between \"AUTHOR(S)\" and \"STUDY COMPLETION DATE\" (vertebrate study)"
    when
        FileAttribute(label == "Vertebrate Study", value.toLowerCase() == "yes")
        $section: Section(!hasTables(), containsString("AUTHOR(S):"), containsString("STUDY COMPLETION DATE:"))
    then
        entityCreationService.betweenStrings("AUTHOR(S):", "STUDY COMPLETION DATE:", "PII", EntityType.ENTITY, $section)
         .forEach(authorEntity -> authorEntity.apply("PII.9.3", "AUTHOR(S) was found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
    end
 rule "PII.9.4: Redact between \"AUTHOR(S)\" and \"STUDY COMPLETION DATE\" (vertebrate study)"
    when
        FileAttribute(label == "Vertebrate Study", value.toLowerCase() == "yes")
        $document: Document(containsStringIgnoreCase("AUTHOR(S)"), containsStringIgnoreCase("STUDY COMPLETION DATE"))
    then
        entityCreationService.shortestBetweenAnyStringIgnoreCase(List.of("AUTHOR(S):","AUTHOR(S)"), List.of("STUDY COMPLETION DATE:","STUDY COMPLETION DATE"), "PII", EntityType.ENTITY, $document)
         .forEach(authorEntity -> authorEntity.apply("PII.9.4", "AUTHOR(S) was found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
    end
@ -990,7 +1016,7 @@ rule "PII.10.0: Redact study director abbreviation"
        $section: Section(containsString("KATH") || containsString("BECH") || containsString("KML"))
    then
        entityCreationService.byRegexIgnoreCase("((KATH)|(BECH)|(KML)) ?(\\d{4})","PII", EntityType.ENTITY, 1, $section)
-        .forEach(entity -> entity.apply("PII.10.0", "Personal information found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
+        .forEach(entity -> entity.redact("PII.10.0", "Personal information found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
     end
@ -1000,7 +1026,7 @@ rule "PII.11.0: Redact On behalf of Sequani Ltd.:"
        $section: Section(!hasTables(), containsString("On behalf of Sequani Ltd.: Name Title"))
    then
        entityCreationService.betweenStrings("On behalf of Sequani Ltd.: Name Title", "On behalf of", "PII", EntityType.ENTITY, $section)
-         .forEach(authorEntity -> authorEntity.apply("PII.11.0", "On behalf of Sequani Ltd.: Name Title was found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
+         .forEach(authorEntity -> authorEntity.redact("PII.11.0", "On behalf of Sequani Ltd.: Name Title was found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
    end
@ -1013,6 +1039,24 @@ rule "PII.12.0: Expand PII entities with salutation prefix"
        .ifPresent(expandedEntity -> expandedEntity.addMatchedRules($entityToExpand.getMatchedRuleList()));
    end
 // Rule unit: PII.13
 rule "PII.13.0: Add recommendation for PII after Contact Person"
    when
        $section: Section(containsString("contact person:"))
    then
        entityCreationService.lineAfterStringsIgnoreCase(List.of("Contact Person", "Contact Person:"),  "PII", EntityType.RECOMMENDATION, $section)
                    .forEach(entity -> entity.skip("PII.13.0", "Line after \"Source:\" in Test Animals Section"));
    end
 // Rule unit: PII.14
 rule "PII.14.0: Recommend title prefixed words as PII"
    when
        $section: Section(containsAnyString("Dr ", "PD Dr ", "Prof. Dr ", "Dr. med. vet ", "Dr. rer. nat ", "PhD ", "BSc ", "(FH) ", "Mr ", "Mrs ", "Ms ", "Miss ", "Dr.", "PD. Dr.", "Prof. Dr.", "Dr. med. vet.", "Dr. rer. nat.", "PhD.", "BSc.", "(FH).", "Mr.", "Mrs.", "Ms.", "Miss."))
    then
        entityCreationService.byRegex("((Dr|PD Dr|Prof. Dr|Dr. med. vet|Dr. rer. nat|PhD|BSc|\\\\(FH\\\\)|Mr|Mrs|Ms|Miss)[.\\\\s]{1,2})([\\\\p{Lu}][\\\\p{L}\\\\-.]{1,20}\\\\s[\\\\p{Lu}][\\\\p{L}\\\\-.]{1,20})", "PII", EntityType.ENTITY, 3, $section);
    end
 //------------------------------------ Other rules ------------------------------------
@ -1032,7 +1076,7 @@ rule "ETC.1.0: Redact Purity"
        $section: Section(containsStringIgnoreCase("purity"))
    then
        entityCreationService.byRegex("\\bPurity:\\s*(<?>?\\s*\\d{1,2}(?:\\.\\d{1,2})?\\s*%)", "purity", EntityType.ENTITY, 1, $section)
-            .forEach(entity -> entity.apply("ETC.1.0", "Purity found", "Reg (EC) No 1107/2009 Art. 63 (2a)"));
+            .forEach(entity -> entity.redact("ETC.1.0", "Purity found", "Reg (EC) No 1107/2009 Art. 63 (2a)"));
     end
@ -1042,7 +1086,7 @@ rule "ETC.2.0: Redact signatures (non vertebrate study)"
        not FileAttribute(label == "Vertebrate Study", value == "Yes")
        $signature: Image(imageType == ImageType.SIGNATURE)
    then
-        $signature.apply("ETC.2.0", "Signature Found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
+        $signature.redact("ETC.2.0", "Signature Found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
    end
 rule "ETC.2.1: Redact signatures (vertebrate study)"
@ -1050,7 +1094,7 @@ rule "ETC.2.1: Redact signatures (vertebrate study)"
        FileAttribute(label == "Vertebrate Study", value == "Yes")
        $signature: Image(imageType == ImageType.SIGNATURE)
    then
-        $signature.apply("ETC.2.1", "Signature Found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
+        $signature.redact("ETC.2.1", "Signature Found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
    end
@ -1060,7 +1104,7 @@ rule "ETC.3.0: Redact logos (vertebrate study)"
        not FileAttribute(label == "Vertebrate Study", value == "Yes")
        $logo: Image(imageType == ImageType.LOGO)
    then
-        $logo.apply("ETC.3.0", "Logo Found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
+        $logo.redact("ETC.3.0", "Logo Found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
    end
 rule "ETC.3.1: Redact logos (non vertebrate study)"
@ -1068,7 +1112,7 @@ rule "ETC.3.1: Redact logos (non vertebrate study)"
        FileAttribute(label == "Vertebrate Study", value == "Yes")
        $logo: Image(imageType == ImageType.LOGO)
    then
-        $logo.apply("ETC.3.1", "Logo Found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
+        $logo.redact("ETC.3.1", "Logo Found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
    end
@ -1077,7 +1121,21 @@ rule "ETC.4.0: Redact dossier dictionary entries"
    when
        $dossierRedaction: TextEntity(type == "dossier_redaction")
    then
-        $dossierRedaction.apply("ETC.4.0", "Specification of impurity found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
+        $dossierRedaction.redact("ETC.4.0", "Specification of impurity found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
    end
 rule "ETC.4.1: Redact dossier dictionary entries"
    when
        $dossierRedaction: TextEntity(type == "dossier_redaction")
    then
        $dossierRedaction.redact("ETC.4.1", "Dossier Redaction found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
    end
 rule "ETC.4.2: Redact dossier dictionary entries"
    when
        $dossierRedaction: TextEntity(type == "dossier_redaction")
    then
        $dossierRedaction.redact("ETC.4.2", "Dossier redaction found", "Article 63(2)(a) of Regulation (EC) No 1107/2009 (making reference to Article 39 of Regulation EC No  178/2002)");
    end
@ -1101,14 +1159,14 @@ rule "ETC.6.0: Redact CAS Number"
            .map(tableCell -> entityCreationService.bySemanticNode(tableCell, "PII", EntityType.ENTITY))
            .filter(Optional::isPresent)
            .map(Optional::get)
-            .forEach(redactionEntity -> redactionEntity.apply("ETC.6.0", "Sample # found in Header", "Reg (EC) No 1107/2009 Art. 63 (2g)"));
+            .forEach(redactionEntity -> redactionEntity.redact("ETC.6.0", "Sample # found in Header", "Reg (EC) No 1107/2009 Art. 63 (2g)"));
    end
 // Rule unit: ETC.7
 rule "ETC.7.0: Guidelines FileAttributes"
    when
-        $section: Section(!hasTables(), (containsString("DATA REQUIREMENT(S):") || containsString("TEST GUIDELINE(S):")) && (containsString("OECD") || containsString("EPA") || containsString("OPPTS")))
+        $section: Section(!hasTables(), containsAnyString("DATA REQUIREMENT(S):", "TEST GUIDELINE(S):") && containsAnyString("OECD", "EPA", "OPPTS"))
    then
        RedactionSearchUtility.findTextRangesByRegex("OECD (No\\.? )?\\d{3}( \\(\\d{4}\\))?", $section.getTextBlock()).stream()
            .map(boundary -> $section.getTextBlock().subSequence(boundary).toString())
@ -1123,7 +1181,7 @@ rule "ETC.8.0: Redact formulas (vertebrate study)"
        not FileAttribute(label == "Vertebrate Study", value == "Yes")
        $logo: Image(imageType == ImageType.FORMULA)
    then
-        $logo.apply("ETC.8.0", "Logo Found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
+        $logo.redact("ETC.8.0", "Logo Found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
    end
 rule "ETC.8.1: Redact formulas (non vertebrate study)"
@ -1131,14 +1189,49 @@ rule "ETC.8.1: Redact formulas (non vertebrate study)"
        FileAttribute(label == "Vertebrate Study", value == "Yes")
        $logo: Image(imageType == ImageType.FORMULA)
    then
-        $logo.apply("ETC.8.1", "Logo Found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
+        $logo.redact("ETC.8.1", "Logo Found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
    end
 // Rule unit: ETC.9
 rule "ETC.9.0: Redact skipped impurities"
    when
        FileAttribute(label == "Redact Skipped Impurities", value == "Yes")
        $skippedImpurities: TextEntity(type == "skipped_impurities")
    then
        $skippedImpurities.redact("ETC.9.0", "Occasional Impurity found", "Article 63(2)(b) of Regulation (EC) No 1107/2009");
    end
 rule "ETC.9.1: Redact impurities"
    when
        FileAttribute(label == "Redact Impurities", value == "Yes")
        $skippedImpurities: TextEntity(type == "impurities")
    then
        $skippedImpurities.redact("ETC.9.1", "Impurity found", "Article 63(2)(b) of Regulation (EC) No 1107/2009");
    end
 // Rule unit: ETC.10
 rule "ETC.10.0: Redact Product Composition Information"
    when
        $compositionInformation: TextEntity(type == "product_composition")
    then
        $compositionInformation.redact("ETC.10.0", "Product Composition Information found", "Article 63(2)(d) of Regulation (EC) No 1107/2009");
    end
 // Rule unit: ETC.11
 rule "ETC.11.0: Recommend first line in table cell with name and address of owner"
    when
        $table: Table(hasHeader("Name and Address of Owner / Tenant"), containsString("trial site"))
        $header: TableCell(isHeader(), containsString("Name and Address of Owner / Tenant")) from $table.streamTableCells().toList()
        $tableCell: TableCell(col == $header.col, row == 2) from $table.streamTableCells().toList()
    then
        entityCreationService.bySemanticNode($tableCell, "PII", EntityType.RECOMMENDATION)
            .ifPresent(redactionEntity -> redactionEntity.redact("ETC.11.0", "Trial Site owner and address found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
    end
 //------------------------------------ AI rules ------------------------------------
 // Rule unit: AI.0
-rule "AI.0.0: add all NER Entities of type CBI_author"
+rule "AI.0.0: Add all NER Entities of type CBI_author"
    salience 999
    when
        nerEntities: NerEntities(hasEntitiesOfType("CBI_author"))
@ -1149,7 +1242,7 @@ rule "AI.0.0: add all NER Entities of type CBI_author"
 // Rule unit: AI.1
-rule "AI.1.0: combine and add NER Entities as CBI_address"
+rule "AI.1.0: Combine and add NER Entities as CBI_address"
    salience 999
    when
        nerEntities: NerEntities(hasEntitiesOfType("ORG") || hasEntitiesOfType("STREET") || hasEntitiesOfType("CITY"))
@ -1159,7 +1252,7 @@ rule "AI.1.0: combine and add NER Entities as CBI_address"
 // Rule unit: AI.2
-rule "AI.2.0: add all NER Entities of any type except CBI_author"
+rule "AI.2.0: Add all NER Entities of any type except CBI_author"
    salience 999
    when
        nerEntities: NerEntities()
@ -1170,6 +1263,16 @@ rule "AI.2.0: add all NER Entities of any type except CBI_author"
    end
 // Rule unit: AI.3
 rule "AI.3.0: Recommend authors from AI as PII"
    salience 999
    when
        nerEntities: NerEntities(hasEntitiesOfType("CBI_author"))
    then
        nerEntities.streamEntitiesOfType("CBI_author")
            .forEach(nerEntity -> entityCreationService.byNerEntity(nerEntity, "PII", EntityType.RECOMMENDATION, document));
    end
 //------------------------------------ Manual redaction rules ------------------------------------
 // Rule unit: MAN.0
@ -1267,7 +1370,6 @@ rule "MAN.3.0: Apply entity recategorization"
        retract($entityToBeRecategorized);
    end
 rule "MAN.3.1: Apply entity recategorization of same type"
    salience 128
    when
@ -1279,7 +1381,6 @@ rule "MAN.3.1: Apply entity recategorization of same type"
        retract($recategorization);
    end
 rule "MAN.3.2: Apply image recategorization"
    salience 128
    when
@ -1317,7 +1418,7 @@ rule "MAN.4.1: Apply legal basis change"
 //------------------------------------ Entity merging rules ------------------------------------
 // Rule unit: X.0
-rule "X.0.0: remove Entity contained by Entity of same type"
+rule "X.0.0: Remove Entity contained by Entity of same type"
    salience 65
    when
        $larger: TextEntity($type: type, $entityType: entityType, active())
@ -1329,7 +1430,7 @@ rule "X.0.0: remove Entity contained by Entity of same type"
 // Rule unit: X.1
-rule "X.1.0: merge intersecting Entities of same type"
+rule "X.1.0: Merge intersecting Entities of same type"
    salience 64
    when
        $first: TextEntity($type: type, $entityType: entityType, !resized(), active())
@ -1345,7 +1446,7 @@ rule "X.1.0: merge intersecting Entities of same type"
 // Rule unit: X.2
-rule "X.2.0: remove Entity of type ENTITY when contained by FALSE_POSITIVE"
+rule "X.2.0: Remove Entity of type ENTITY when contained by FALSE_POSITIVE"
    salience 64
    when
        $falsePositive: TextEntity($type: type, entityType == EntityType.FALSE_POSITIVE, active())
@ -1358,7 +1459,7 @@ rule "X.2.0: remove Entity of type ENTITY when contained by FALSE_POSITIVE"
 // Rule unit: X.3
-rule "X.3.0: remove Entity of type RECOMMENDATION when contained by FALSE_RECOMMENDATION"
+rule "X.3.0: Remove Entity of type RECOMMENDATION when contained by FALSE_RECOMMENDATION"
    salience 64
    when
        $falseRecommendation: TextEntity($type: type, entityType == EntityType.FALSE_RECOMMENDATION, active())
@ -1370,7 +1471,7 @@ rule "X.3.0: remove Entity of type RECOMMENDATION when contained by FALSE_RECOMM
 // Rule unit: X.4
-rule "X.4.0: remove Entity of type RECOMMENDATION when intersected by ENTITY with same type"
+rule "X.4.0: Remove Entity of type RECOMMENDATION when intersected by ENTITY with same type"
    salience 256
    when
        $entity: TextEntity($type: type, (entityType == EntityType.ENTITY || entityType == EntityType.HINT), active())
@ -1383,7 +1484,7 @@ rule "X.4.0: remove Entity of type RECOMMENDATION when intersected by ENTITY wit
 // Rule unit: X.5
-rule "X.5.0: remove Entity of type RECOMMENDATION when contained by ENTITY"
+rule "X.5.0: Remove Entity of type RECOMMENDATION when contained by ENTITY"
    salience 256
    when
        $entity: TextEntity((entityType == EntityType.ENTITY || entityType == EntityType.HINT), active())
@ -1395,7 +1496,7 @@ rule "X.5.0: remove Entity of type RECOMMENDATION when contained by ENTITY"
 // Rule unit: X.6
-rule "X.6.0: remove Entity of lower rank, when contained by by entity of type ENTITY"
+rule "X.6.0: Remove Entity of lower rank, when contained by by entity of type ENTITY"
    salience 32
    when
        $higherRank: TextEntity($type: type, (entityType == EntityType.ENTITY || entityType == EntityType.HINT), active())
@ -1422,7 +1523,7 @@ rule "X.6.1: remove Entity of higher rank, when intersected by entity of type EN
 //------------------------------------ File attributes rules ------------------------------------
 // Rule unit: FA.1
-rule "FA.1.0: remove duplicate FileAttributes"
+rule "FA.1.0: Remove duplicate FileAttributes"
    salience 64
    when
        $fileAttribute: FileAttribute($label: label, $value: value)
@ -1435,7 +1536,7 @@ rule "FA.1.0: remove duplicate FileAttributes"
 //------------------------------------ Local dictionary search rules ------------------------------------
 // Rule unit: LDS.0
-rule "LDS.0.0: run local dictionary search"
+rule "LDS.0.0: Run local dictionary search"
    agenda-group "LOCAL_DICTIONARY_ADDS"
    salience -999
    when
--- a/redaction-service-v1/redaction-service-server-v1/src/test/resources/drools/documine_flora.drl
+++ b/redaction-service-v1/redaction-service-server-v1/src/test/resources/drools/documine_flora.drl
@ -22,6 +22,7 @@ import com.iqser.red.service.redaction.v1.server.model.document.entity.MatchedRu
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.*;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.Section;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.Table;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.TableCell;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.SemanticNode;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.Document;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.Paragraph;
@ -64,8 +65,10 @@ global Dictionary dictionary
 query "getFileAttributes"
    $fileAttribute: FileAttribute()
    end
 //---------------------------------------------------------------------------
 //------------------------------------ H rules ------------------------------------
 // Rule unit: H.0
 rule "H.0.0: retract table of contents page"
    when
        $page: Page(getMainBodyTextBlock().getSearchText().contains("........") || (getMainBodyTextBlock().getSearchText().contains("APPENDICES") && getMainBodyTextBlock().getSearchText().contains("TABLES")))
@ -75,6 +78,7 @@ rule "H.0.0: retract table of contents page"
    end
 // Rule unit: H.1
 rule "H.1.0: Ignore Table of Contents"
    salience 10
    when
@ -86,7 +90,7 @@ rule "H.1.0: Ignore Table of Contents"
    end
-// Rule unit: MAN.0
+// Rule unit: H.2
 rule "H.2.0: Show headlines"
    when
        $headline: Headline()
@ -95,6 +99,7 @@ rule "H.2.0: Show headlines"
    end
 // Rule unit: H.3
 rule "H.3.0: Study Type File Attribute"
    when
        not FileAttribute(label == "OECD Number", valueEqualsAnyOf("402","403","404","405","425","429","436","438","439","471","487"))
@ -112,6 +117,9 @@ rule "H.3.0: Study Type File Attribute"
    end
 //------------------------------------ General documine rules ------------------------------------
 // Rule unit: DOC.1
 rule "DOC.1.0: Guidelines"
     when
         $section: Section(
@ -171,7 +179,6 @@ rule "DOC.1.0: Guidelines"
        );
     end
 rule "DOC.1.2: Guidelines"
     when
         $section: Section(
@ -197,7 +204,6 @@ rule "DOC.1.2: Guidelines"
         });
     end
 rule "DOC.1.3: Guidelines"
     when
         $section: Section(
@ -227,6 +233,7 @@ rule "DOC.1.3: Guidelines"
     end
 // Rule unit: DOC.2
 rule "DOC.2.0: Report number"
    when
       $section: Section(containsString("LABORATORY PROJECT ID") , containsString("Report Number:"))
@ -237,6 +244,7 @@ rule "DOC.2.0: Report number"
    end
 // Rule unit: DOC.3
 rule "DOC.3.0: Experimental Starting Date"
    when
        $section: Section(containsString("Experimental I. Starting Date:") || containsString("Experimental II. Starting Date:") || containsStringIgnoreCase("experimental start date") || containsStringIgnoreCase("experimental starting date"))
@ -257,6 +265,7 @@ rule "DOC.3.0: Experimental Starting Date"
    end
 // Rule unit: DOC.4
 rule "DOC.4.0: Experimental Completion Date"
    when
        $section: Section(containsStringIgnoreCase("experimental termination date") || containsStringIgnoreCase("experimental completion date"))
@ -275,7 +284,8 @@ rule "DOC.4.0: Experimental Completion Date"
    end
- rule "DOC.5.0: Ignore species and strain in irrelevant study types"
+// Rule unit: DOC.5
 rule "DOC.5.0: Ignore species and strain in irrelevant study types"
     salience 1
     when
         FileAttribute(label == "OECD Number", valueEqualsAnyOf("406","428","438","439","471","474","487"))
@ -287,8 +297,7 @@ rule "DOC.4.0: Experimental Completion Date"
         });
     end
-
+rule "DOC.5.1: Hide all skipped species and strains except in the relevant sections"
 rule "DOC.5.1: Hide all skipped species and strains except in the relevant sections"
     salience 1
     when
        FileAttribute(label == "OECD Number", valueEqualsAnyOf("402","403","404","405","425","429","436"))
@ -307,7 +316,6 @@ rule "DOC.4.0: Experimental Completion Date"
         });
     end
 rule "DOC.5.2: Species"
    when
        FileAttribute(label == "OECD Number", valueEqualsAnyOf("402","403","404","405","425","429","436"))
@ -319,7 +327,6 @@ rule "DOC.5.2: Species"
        });
    end
 rule "DOC.5.3: Strain"
    when
        FileAttribute(label == "OECD Number", valueEqualsAnyOf("402","403","404","405","425","429","436"))
@ -339,20 +346,21 @@ rule "DOC.5.3: Strain"
    end
 // Rule unit: DOC.6
 rule "DOC.6.0: study title by document structure"
    when
       $table: Table(onPage(1),
                    (containsString("Final Report") || containsString("SPL")),
                     numberOfRows == 1,
                     numberOfCols == 1)
       $tableCell: TableCell(row == 1, col == 1) from $table.streamTableCells().toList()
       $paragraph: Paragraph(previousSibling.isPresent(), nextSibling.isPresent()) from $tableCell.streamChildren().toList()
    then
-
+        entityCreationService.bySemanticNode($paragraph, "title", EntityType.ENTITY).ifPresent(entity -> {
        entityCreationService.bySemanticNode($table.getCell(0, 0).streamChildren().toList().get(1), "title", EntityType.ENTITY).ifPresent(entity -> {
            entity.apply("DOC.6.0", "Study title found", "n-a");
        });
     end
 rule "DOC.6.1: study title"
    when
        $table: Table(onPage(1), (containsString("Final Report") || containsString("SPL")))
@ -362,7 +370,6 @@ rule "DOC.6.1: study title"
        });
     end
 rule "DOC.6.2: study title"
    when
        not Table(onPage(1), (containsString("Final Report") || containsString("SPL")))
@ -374,7 +381,7 @@ rule "DOC.6.2: study title"
     end
-
+// Rule unit: DOC.7
 rule "DOC.7.0: Performing Laboratory (Name)"
    when
       $section: Section(containsString("PERFORMING LABORATORY:"))
@ -384,8 +391,7 @@ rule "DOC.7.0: Performing Laboratory (Name)"
        });
    end
-
+rule "DOC.7.1: Performing Laboratory (Country)"
 rule "DOC.7.1: Performing Laboratory (Country)"
     when
         nerEntities: NerEntities(hasEntitiesOfType("COUNTRY"))
         $section: Section(containsString("PERFORMING LABORATORY:"))
@ -399,7 +405,6 @@ rule "DOC.7.0: Performing Laboratory (Name)"
                     });
     end
 rule "DOC.7.2: Performing Laboratory (Country & Name) from dict"
    when
        $section: Section(
@ -415,7 +420,6 @@ rule "DOC.7.2: Performing Laboratory (Country & Name) from dict"
        });
    end
 rule "DOC.7.3: Performing Laboratory (Country) from dict"
    when
        $section: Section(
@ -430,6 +434,7 @@ rule "DOC.7.3: Performing Laboratory (Country) from dict"
    end
 // Rule unit: DOC.8
 rule "DOC.8.0: GLP Study"
    when
        $headline: Headline(containsString("GOOD LABORATORY PRACTICE COMPLIANCE")
@ -447,6 +452,7 @@ rule "DOC.8.0: GLP Study"
    end
 // Rule unit: DOC.9
 rule "DOC.9.0: Batch number from CoA"
    when
        $section: Section(
@ -485,7 +491,6 @@ rule "DOC.9.0: Batch number from CoA"
        });
   end
 rule "DOC.9.1: Batch number"
    when
        $section: Section(
@ -518,7 +523,6 @@ rule "DOC.9.1: Batch number"
                      });
   end
 rule "DOC.9.2: Batch number"
    when
        $section: Section(
@ -551,8 +555,7 @@ rule "DOC.9.2: Batch number"
   end
-
+// Rule unit: DOC.10
 rule "DOC.10.0: Conclusions - LD50, LC50, Confidence"
    when
        FileAttribute(label == "OECD Number", valueEqualsAnyOf("402","403","425","436"))
@ -586,6 +589,7 @@ rule "DOC.10.0: Conclusions - LD50, LC50, Confidence"
    end
 // Rule unit: DOC.11
 rule "DOC.11.0: Guideline Deviation"
    when
        FileAttribute(label == "OECD Number", valueEqualsAnyOf("402","403","404","405","425","429","436","471"))
@ -611,7 +615,6 @@ rule "DOC.11.0: Guideline Deviation"
        });
    end
 rule "DOC.11.1: Guideline Deviation in text"
    when
        FileAttribute(label == "OECD Number", valueEqualsAnyOf("402","403","404","405","425","429","436","471"))
@ -626,6 +629,7 @@ rule "DOC.11.1: Guideline Deviation in text"
    end
 // Rule unit: DOC.12
 rule "DOC.12.0: Clinical Signs"
    when
        FileAttribute(label == "OECD Number", value == "425")
@ -636,6 +640,7 @@ rule "DOC.12.0: Clinical Signs"
    end
 // Rule unit: DOC.13
 rule "DOC.13.0: Dosages"
    when
        FileAttribute(label == "OECD Number", value == "425")
@ -656,6 +661,7 @@ rule "DOC.13.0: Dosages"
    end
 // Rule unit: DOC.14
 rule "DOC.14.0: Mortality"
    when
        $headline: Headline(containsString("Mortality") && !containsString("TABLE"))
@ -666,6 +672,7 @@ rule "DOC.14.0: Mortality"
    end
 // Rule unit: DOC.15
 rule "DOC.15.0: Study Conclusion"
    when
        FileAttribute(label == "OECD Number", valueEqualsAnyOf("402","403","404","405","425","429","436","471"))
@ -678,6 +685,7 @@ rule "DOC.15.0: Study Conclusion"
    end
 // Rule unit: DOC.16
 rule "DOC.16.0: Weight Behavior Changes"
    when
    FileAttribute(label == "OECD Number", value == "402")
@ -696,6 +704,7 @@ rule "DOC.16.0: Weight Behavior Changes"
    end
 // Rule unit: DOC.17
 rule "DOC.17.0: Necropsy findings"
    when
    FileAttribute(label == "OECD Number", valueEqualsAnyOf("402","403","436"))
@ -715,6 +724,7 @@ rule "DOC.17.0: Necropsy findings"
    end
 // Rule unit: DOC.18
 rule "DOC.18.0: Clinical observations"
    when
        FileAttribute(label == "OECD Number", value == "403")
@ -735,6 +745,7 @@ rule "DOC.18.0: Clinical observations"
    end
 // Rule unit: DOC.19
 rule "DOC.19.0: Bodyweight changes"
    when
        FileAttribute(label == "OECD Number", value == "403")
@ -745,6 +756,7 @@ rule "DOC.19.0: Bodyweight changes"
    end
 // Rule unit: DOC.20
 rule "DOC.20.0: Study Design"
    when
        FileAttribute(label == "OECD Number", valueEqualsAnyOf("402","404","405","406","428","429","438","439","474","487"))
@ -757,7 +769,6 @@ rule "DOC.20.0: Study Design"
            .forEach(entity -> entity.apply("DOC.20.0", "Study design section found", "n-a"));
    end
 rule "DOC.20.1: Study Design"
    when
        Headline(containsStringIgnoreCase("Study Design"), $sectionIdentifier: getSectionIdentifier())
@ -770,6 +781,7 @@ rule "DOC.20.1: Study Design"
    end
 // Rule unit: DOC.21
 rule "DOC.21.0: Results and Conclusion (406, 428, 438, 439, 474 & 487)"
    when
        FileAttribute(label == "OECD Number", valueEqualsAnyOf("406","428","438","439","474","487"))
@ -784,7 +796,6 @@ rule "DOC.21.0: Results and Conclusion (406, 428, 438, 439, 474 & 487)"
            .forEach(entity -> entity.apply("DOC.21.0", "Results and Conclusion found", "n-a"));
    end
 rule "DOC.21.1: Results and Conclusion (406, 428, 438, 439, 474 & 487)"
    when
        FileAttribute(label == "OECD Number", valueEqualsAnyOf("406","428","438","439","474","487"))
@ -800,6 +811,7 @@ rule "DOC.21.1: Results and Conclusion (406, 428, 438, 439, 474 & 487)"
    end
 // Rule unit: DOC.22
 rule "DOC.22.0: Detailing (404 & 405)"
    when
        FileAttribute(label == "OECD Number", valueEqualsAnyOf("404","405"))
@ -814,6 +826,7 @@ rule "DOC.22.0: Detailing (404 & 405)"
    end
 // Rule unit: DOC.23
 rule "DOC.23.0: Preliminary Test Results (429)"
    when
        FileAttribute(label == "OECD Number", value == "429")
@ -827,6 +840,7 @@ rule "DOC.23.0: Preliminary Test Results (429)"
    end
 // Rule unit: DOC.24
 rule "DOC.24.0: Test Results (429)"
    when
        FileAttribute(label == "OECD Number", value == "429")
@ -836,7 +850,6 @@ rule "DOC.24.0: Test Results (429)"
        .forEach(entity -> entity.apply("DOC.24.0", "Test Results found", "n-a"));
    end
 rule "DOC.24.1: Test Results (429)"
    when
        Headline(containsStringIgnoreCase("RESULTS AND DISCUSSION"), $sectionIdentifierResultsAndDiscussion: getSectionIdentifier())
@ -849,6 +862,7 @@ rule "DOC.24.1: Test Results (429)"
    end
 // Rule unit: DOC.25
 rule "DOC.25.0: Approach used (429)"
    when
        FileAttribute(label == "OECD Number", value == "429")
@ -863,6 +877,7 @@ rule "DOC.25.0: Approach used (429)"
    end
 // Rule unit: DOC.26
 rule "DOC.26.0: Sex"
    when
        FileAttribute(label == "OECD Number", valueEqualsAnyOf("405","429"))
@ -885,6 +900,7 @@ rule "DOC.26.0: Sex"
    end
 // Rule unit: DOC.27
 rule "DOC.27.0: Animal Number 405"
    when
        FileAttribute(label == "OECD Number", value == "405")
@ -910,6 +926,7 @@ rule "DOC.27.0: Animal Number 405"
    end
 // Rule unit: DOC.28
 rule "DOC.28.0: Animal Number 429"
    when
     FileAttribute(label == "OECD Number", value == "429")
@ -935,7 +952,6 @@ rule "DOC.28.0: Animal Number 429"
        });
    end
 rule "DOC.28.1: No. Of animals - Fallback to appendix tables listing all individual animals for 429"
    when
        $keyword: String() from List.of("Animal Number", "Animal No.", "Animal number")
@ -953,6 +969,7 @@ rule "DOC.28.1: No. Of animals - Fallback to appendix tables listing all individ
     end
 // Rule unit: DOC.29
 rule "DOC.29.0: 4h Exposure"
    when
        FileAttribute(label == "OECD Number", valueEqualsAnyOf("403","436"))
@ -966,6 +983,7 @@ rule "DOC.29.0: 4h Exposure"
    end
 // Rule unit: DOC.30
 rule "DOC.30.0: Dilution of the test substance"
    when
        FileAttribute(label == "OECD Number", value == "404")
@ -979,6 +997,7 @@ rule "DOC.30.0: Dilution of the test substance"
    end
 // Rule unit: DOC.31
 rule "DOC.31.0: Positive Control"
    when
        FileAttribute(label == "OECD Number", value == "429")
@ -992,6 +1011,7 @@ rule "DOC.31.0: Positive Control"
    end
 // Rule unit: DOC.32
 rule "DOC.32.0: Mortality Statement"
    when
        FileAttribute(label == "OECD Number", value == "402")
@ -1002,6 +1022,7 @@ rule "DOC.32.0: Mortality Statement"
    end
 // Rule unit: DOC.33
 rule "DOC.33.0: Dose Mortality"
    when
        FileAttribute(label == "OECD Number", value == "425")
@ -1045,6 +1066,7 @@ rule "DOC.33.0: Dose Mortality"
    end
 // Rule unit: DOC.34
 rule "DOC.34.0: Results (Main Study)"
    when
        FileAttribute(label == "OECD Number", value == "429")
@ -1059,6 +1081,7 @@ rule "DOC.34.0: Results (Main Study)"
    end
 // Rule unit: DOC.35
 rule "DOC.35.0: Doses (mg/kg bodyweight)"
    when
        FileAttribute(label == "OECD Number", value == "402")
@ -1070,6 +1093,7 @@ rule "DOC.35.0: Doses (mg/kg bodyweight)"
            .forEach(entity -> entity.apply("DOC.35.0", "Doses per bodyweight information found", "n-a"));
    end
 //------------------------------------ Manual redaction rules ------------------------------------
 // Rule unit: MAN.0
@ -1212,11 +1236,10 @@ rule "MAN.4.1: Apply legal basis change"
    end
 //------------------------------------ Entity merging rules ------------------------------------
 // Rule unit: X.0
-rule "X.0.0: remove Entity contained by Entity of same type"
+rule "X.0.0: Remove Entity contained by Entity of same type"
    salience 65
    when
        $larger: TextEntity($type: type, $entityType: entityType, active())
@ -1228,7 +1251,7 @@ rule "X.0.0: remove Entity contained by Entity of same type"
 // Rule unit: X.2
-rule "X.2.0: remove Entity of type ENTITY when contained by FALSE_POSITIVE"
+rule "X.2.0: Remove Entity of type ENTITY when contained by FALSE_POSITIVE"
    salience 64
    when
        $falsePositive: TextEntity($type: type, entityType == EntityType.FALSE_POSITIVE, active())
@ -1241,7 +1264,7 @@ rule "X.2.0: remove Entity of type ENTITY when contained by FALSE_POSITIVE"
 // Rule unit: X.3
-rule "X.3.0: remove Entity of type RECOMMENDATION when contained by FALSE_RECOMMENDATION"
+rule "X.3.0: Remove Entity of type RECOMMENDATION when contained by FALSE_RECOMMENDATION"
    salience 64
    when
        $falseRecommendation: TextEntity($type: type, entityType == EntityType.FALSE_RECOMMENDATION, active())
@ -1253,7 +1276,7 @@ rule "X.3.0: remove Entity of type RECOMMENDATION when contained by FALSE_RECOMM
 // Rule unit: X.4
-rule "X.4.0: remove Entity of type RECOMMENDATION when intersected by ENTITY with same type"
+rule "X.4.0: Remove Entity of type RECOMMENDATION when intersected by ENTITY with same type"
    salience 256
    when
        $entity: TextEntity($type: type, (entityType == EntityType.ENTITY || entityType == EntityType.HINT), active())
@ -1266,7 +1289,7 @@ rule "X.4.0: remove Entity of type RECOMMENDATION when intersected by ENTITY wit
 // Rule unit: X.5
-rule "X.5.0: remove Entity of type RECOMMENDATION when contained by ENTITY"
+rule "X.5.0: Remove Entity of type RECOMMENDATION when contained by ENTITY"
    salience 256
    when
        $entity: TextEntity((entityType == EntityType.ENTITY || entityType == EntityType.HINT), active())
@ -1291,8 +1314,7 @@ rule "X.7.0: remove all images"
 //------------------------------------ File attributes rules ------------------------------------
 // Rule unit: FA.1
-rule "FA.1.0: remove duplicate FileAttributes"
+rule "FA.1.0: Remove duplicate FileAttributes"
    salience 64
    when
        $fileAttribute: FileAttribute($label: label, $value: value)
@ -1302,8 +1324,10 @@ rule "FA.1.0: remove duplicate FileAttributes"
    end
 //------------------------------------ Local dictionary search rules ------------------------------------
 // Rule unit: LDS.0
-rule "LDS.0.0: run local dictionary search"
+rule "LDS.0.0: Run local dictionary search"
    agenda-group "LOCAL_DICTIONARY_ADDS"
    salience -999
    when
--- a/redaction-service-v1/redaction-service-server-v1/src/test/resources/drools/manual_redaction_rules.drl
+++ b/redaction-service-v1/redaction-service-server-v1/src/test/resources/drools/manual_redaction_rules.drl
@ -22,6 +22,7 @@ import com.iqser.red.service.redaction.v1.server.model.document.entity.MatchedRu
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.*;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.Section;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.Table;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.TableCell;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.SemanticNode;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.Document;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.Paragraph;
@ -210,7 +211,7 @@ rule "MAN.4.1: Apply legal basis change"
 //------------------------------------ Local dictionary search rules ------------------------------------
 // Rule unit: LDS.0
-rule "LDS.0.0: run local dictionary search"
+rule "LDS.0.0: Run local dictionary search"
    agenda-group "LOCAL_DICTIONARY_ADDS"
    salience -999
    when
--- a/redaction-service-v1/redaction-service-server-v1/src/test/resources/drools/rules.drl
+++ b/redaction-service-v1/redaction-service-server-v1/src/test/resources/drools/rules.drl
@ -22,6 +22,7 @@ import com.iqser.red.service.redaction.v1.server.model.document.entity.MatchedRu
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.*;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.Section;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.Table;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.TableCell;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.SemanticNode;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.Document;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.Paragraph;
@ -1136,7 +1137,7 @@ rule "FA.1.0: remove duplicate FileAttributes"
 //------------------------------------ Local dictionary search rules ------------------------------------
 // Rule unit: LDS.0
-rule "LDS.0.0: run local dictionary search"
+rule "LDS.0.0: Run local dictionary search"
    agenda-group "LOCAL_DICTIONARY_ADDS"
    salience -999
    when
--- a/redaction-service-v1/redaction-service-server-v1/src/test/resources/drools/rules_v2.drl
+++ b/redaction-service-v1/redaction-service-server-v1/src/test/resources/drools/rules_v2.drl
@ -22,6 +22,7 @@ import com.iqser.red.service.redaction.v1.server.model.document.entity.MatchedRu
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.*;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.Section;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.Table;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.TableCell;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.SemanticNode;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.Document;
 import com.iqser.red.service.redaction.v1.server.model.document.nodes.Paragraph;
@ -349,7 +350,7 @@ rule "FA.1.0: remove duplicate FileAttributes"
 //------------------------------------ Local dictionary search rules ------------------------------------
 // Rule unit: LDS.0
-rule "LDS.0.0: run local dictionary search"
+rule "LDS.0.0: Run local dictionary search"
    agenda-group "LOCAL_DICTIONARY_ADDS"
    salience -999
    when
--- a/redaction-service-v1/redaction-service-server-v1/src/test/resources/performance/dictionaries/EFSA_sanitisation_GFL_v1/rules.drl
+++ b/redaction-service-v1/redaction-service-server-v1/src/test/resources/performance/dictionaries/EFSA_sanitisation_GFL_v1/rules.drl
@ -16,6 +16,7 @@ import com.iqser.red.service.redaction.v1.server.document.graph.*;
 import com.iqser.red.service.redaction.v1.server.document.graph.nodes.*;
 import com.iqser.red.service.redaction.v1.server.document.graph.nodes.Section;
 import com.iqser.red.service.redaction.v1.server.document.graph.nodes.Table;
 import com.iqser.red.service.redaction.v1.server.document.graph.nodes.TableCell;
 import com.iqser.red.service.redaction.v1.server.document.graph.nodes.SemanticNode;
 import com.iqser.red.service.redaction.v1.server.document.graph.nodes.Document;
 import com.iqser.red.service.redaction.v1.server.document.graph.nodes.Paragraph;
@ -724,7 +725,7 @@ rule "FA.1.0: remove duplicate FileAttributes"
 //------------------------------------ Local dictionary search rules ------------------------------------
 // Rule unit: LDS.0
-rule "LDS.0.0: run local dictionary search"
+rule "LDS.0.0: Run local dictionary search"
    agenda-group "LOCAL_DICTIONARY_ADDS"
    salience -999
    when
Author	SHA1	Message	Date
Ali Oezyetimoglu	c4e73cbdc5	RED-6807: adapted all RM rules	2023-10-16 20:14:55 +02:00
Ali Oezyetimoglu	7e9c6c8695	RED-6807: updated RM and DM rules * changed typos * added rules * fixed bugs	2023-10-16 17:34:57 +02:00
Ali Oezyetimoglu	c26b4f3827	RED-6807: added all new customer rules	2023-10-16 17:34:57 +02:00