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14 Commits
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RED-9760-4
| Author | SHA1 | Date | |
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a27cf72558 | ||
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acb5b4c308 | ||
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61ee1c12ca | ||
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abec7ae6bf | ||
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afeddb4d91 | ||
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359c237943 | ||
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9789943f45 | ||
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f096aab156 | ||
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156b102e87 | ||
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180728721a | ||
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fb9d1042ac | ||
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046b4b29b9 | ||
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dce797ef8e | ||
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8b8dab2a18 |
@ -12,11 +12,11 @@ plugins {
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description = "redaction-service-server-v1"
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val layoutParserVersion = "0.141.0"
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val layoutParserVersion = "0.142.6"
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val jacksonVersion = "2.15.2"
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val droolsVersion = "9.44.0.Final"
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val pdfBoxVersion = "3.0.0"
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val persistenceServiceVersion = "2.444.0"
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val persistenceServiceVersion = "2.465.25"
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val springBootStarterVersion = "3.1.5"
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val springCloudVersion = "4.0.4"
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val testContainersVersion = "1.19.7"
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@ -43,6 +43,7 @@ dependencies {
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implementation("com.iqser.red.commons:storage-commons:2.45.0")
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implementation("com.knecon.fforesight:tenant-commons:0.24.0")
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implementation("com.knecon.fforesight:tracing-commons:0.5.0")
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implementation("com.knecon.fforesight:lifecycle-commons:0.6.0")
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implementation("com.fasterxml.jackson.module:jackson-module-afterburner:${jacksonVersion}")
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implementation("com.fasterxml.jackson.datatype:jackson-datatype-jsr310:${jacksonVersion}")
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@ -13,6 +13,7 @@ import org.springframework.boot.context.properties.EnableConfigurationProperties
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import org.springframework.cache.annotation.EnableCaching;
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import org.springframework.cloud.openfeign.EnableFeignClients;
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import org.springframework.context.annotation.Bean;
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import org.springframework.context.annotation.EnableAspectJAutoProxy;
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import org.springframework.context.annotation.Import;
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import org.springframework.data.mongodb.repository.config.EnableMongoRepositories;
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@ -20,6 +21,7 @@ import com.iqser.red.service.dictionarymerge.commons.DictionaryMergeService;
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import com.iqser.red.service.persistence.service.v1.api.shared.mongo.SharedMongoAutoConfiguration;
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import com.iqser.red.service.redaction.v1.server.client.RulesClient;
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import com.iqser.red.storage.commons.StorageAutoConfiguration;
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import com.knecon.fforesight.lifecyclecommons.LifecycleAutoconfiguration;
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import com.knecon.fforesight.mongo.database.commons.MongoDatabaseCommonsAutoConfiguration;
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import com.knecon.fforesight.mongo.database.commons.liquibase.EnableMongoLiquibase;
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import com.knecon.fforesight.tenantcommons.MultiTenancyAutoConfiguration;
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@ -32,13 +34,14 @@ import lombok.extern.slf4j.Slf4j;
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@Slf4j
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@EnableCaching
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@ImportAutoConfiguration({MultiTenancyAutoConfiguration.class, SharedMongoAutoConfiguration.class})
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@ImportAutoConfiguration({MultiTenancyAutoConfiguration.class, SharedMongoAutoConfiguration.class, LifecycleAutoconfiguration.class})
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@Import({MetricsConfiguration.class, StorageAutoConfiguration.class, MongoDatabaseCommonsAutoConfiguration.class})
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@EnableFeignClients(basePackageClasses = RulesClient.class)
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@EnableConfigurationProperties(RedactionServiceSettings.class)
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@EnableMongoRepositories(basePackages = "com.iqser.red.service.persistence")
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@EnableMongoLiquibase
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@SpringBootApplication(exclude = {SecurityAutoConfiguration.class, ManagementWebSecurityAutoConfiguration.class, DataSourceAutoConfiguration.class, LiquibaseAutoConfiguration.class, MongoAutoConfiguration.class, MongoDataAutoConfiguration.class})
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@EnableAspectJAutoProxy
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public class Application {
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public static void main(String[] args) {
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@ -85,7 +85,7 @@ public class Section extends AbstractSemanticNode {
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*/
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public boolean anyHeadlineContainsString(String value) {
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return streamAllSubNodesOfType(NodeType.HEADLINE).anyMatch(h -> h.containsString(value));
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return streamAllSubNodesOfType(NodeType.HEADLINE).anyMatch(h -> h.containsString(value)) || getHeadline().containsString(value);
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}
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@ -97,7 +97,7 @@ public class Section extends AbstractSemanticNode {
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*/
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public boolean anyHeadlineContainsStringIgnoreCase(String value) {
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return streamAllSubNodesOfType(NodeType.HEADLINE).anyMatch(h -> h.containsStringIgnoreCase(value));
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return streamAllSubNodesOfType(NodeType.HEADLINE).anyMatch(h -> h.containsStringIgnoreCase(value)) || getHeadline().containsStringIgnoreCase(value);
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}
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@ -367,7 +367,7 @@ public class AnalyzeService {
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return new NerEntitiesModel(nerEntitiesModel.getData().entrySet()
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.stream() //
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.filter(entry -> sectionsToReanalyseIds.contains(entry.getKey())) //
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.filter(entry -> sectionsToReanalyseIds.contains(getSuperSectionID(entry.getKey()))) //
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.collect(Collectors.toMap(Map.Entry::getKey, Map.Entry::getValue)));
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}
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@ -383,4 +383,11 @@ public class AnalyzeService {
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return nerEntities;
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}
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private static Integer getSuperSectionID(String section) {
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return NerEntitiesAdapter.sectionNumberToTreeId(section)
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.get(0);
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}
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}
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@ -223,7 +223,6 @@ public class EntityLogCreatorService {
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String type = precursorEntity.getManualOverwrite().getType()
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.orElse(precursorEntity.getType());
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boolean isHint = isHint(precursorEntity.getEntityType());
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return EntityLogEntry.builder()
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.id(precursorEntity.getId())
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.reason(precursorEntity.buildReasonWithManualChangeDescriptions())
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@ -40,7 +40,8 @@ public class ComponentMappingFileSystemCache {
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public File getComponentMappingFile(ComponentMappingMetadata metadata) {
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Path mappingFile = getMappingFileFromMetadata(metadata);
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Path mappingFileMetaDataFile = mappingFile.resolveSibling(metadata.getName() + METADATA_SUFFIX);
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Path mappingFileMetaDataFile = getMappingMetadataFileFromMetadata(metadata);
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synchronized (ComponentMappingFileSystemCache.class) {
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if (fileExistsAndUpToDate(metadata, mappingFile, mappingFileMetaDataFile)) {
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@ -52,7 +53,7 @@ public class ComponentMappingFileSystemCache {
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InputStreamResource inputStreamResource = storageService.getObject(TenantContext.getTenantId(), metadata.getStorageId());
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Files.write(mappingFile, inputStreamResource.getContentAsByteArray(), StandardOpenOption.WRITE, StandardOpenOption.TRUNCATE_EXISTING, StandardOpenOption.CREATE);
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mapper.writeValue(mappingFileMetaDataFile.toFile(), metadata);
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return mappingFile.toFile();
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@ -87,6 +88,13 @@ public class ComponentMappingFileSystemCache {
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}
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private Path getMappingMetadataFileFromMetadata(ComponentMappingMetadata metadata) {
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Path tenantStem = mappingFileDir.resolve(TenantContext.getTenantId());
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return tenantStem.resolve(metadata.getStorageId() + METADATA_SUFFIX);
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}
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private boolean fileExistsAndUpToDate(ComponentMappingMetadata metadata, Path mappingFile, Path mappingFileMetaDataFile) {
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if (mappingFile.toFile().exists() && mappingFile.toFile().isFile() && mappingFileMetaDataFile.toFile().exists() && mappingFileMetaDataFile.toFile().isFile()) {
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@ -4,6 +4,7 @@ import java.io.File;
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import java.io.FileReader;
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import java.io.Reader;
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import java.nio.charset.Charset;
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import java.time.Duration;
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import java.util.List;
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import org.springframework.stereotype.Service;
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@ -36,7 +37,7 @@ public class ComponentMappingMemoryCache {
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public ComponentMappingMemoryCache(ComponentMappingFileSystemCache componentMappingFileSystemCache) {
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this.fileSystemCache = componentMappingFileSystemCache;
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cache = CacheBuilder.newBuilder().maximumWeight(MAX_NUMBER_OF_LINES).weigher(COMPONENT_MAPPING_WEIGHER).build();
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cache = CacheBuilder.newBuilder().maximumWeight(MAX_NUMBER_OF_LINES).weigher(COMPONENT_MAPPING_WEIGHER).expireAfterAccess(Duration.ofDays(1)).build();
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}
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@ -15,6 +15,7 @@ import com.iqser.red.service.persistence.service.v1.api.shared.model.analysislog
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import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.ManualRedactions;
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import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.BaseAnnotation;
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import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.IdRemoval;
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import com.iqser.red.service.redaction.v1.server.RedactionServiceSettings;
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import com.iqser.red.service.redaction.v1.server.model.PrecursorEntity;
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import com.iqser.red.service.redaction.v1.server.model.document.entity.EntityType;
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import com.iqser.red.service.redaction.v1.server.model.document.entity.TextEntity;
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@ -35,6 +36,7 @@ public class EntityFromPrecursorCreationService {
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static double MATCH_THRESHOLD = 10; // Is compared to the average sum of distances in pdf coordinates for each corner of the bounding box of the entities
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EntityFindingUtility entityFindingUtility;
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DictionaryService dictionaryService;
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RedactionServiceSettings settings;
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public List<PrecursorEntity> createEntitiesIfFoundAndReturnNotFoundEntries(ManualRedactions manualRedactions, SemanticNode node, String dossierTemplateId) {
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@ -92,7 +94,7 @@ public class EntityFromPrecursorCreationService {
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notFoundEntities.add(precursorEntity);
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continue;
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}
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createCorrectEntity(precursorEntity, optionalClosestEntity.get());
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createCorrectEntity(precursorEntity, optionalClosestEntity.get(), settings.isAnnotationMode());
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}
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tempEntitiesByValue.values()
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@ -129,8 +131,7 @@ public class EntityFromPrecursorCreationService {
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precursorEntity.type(),
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precursorEntity.getEntityType(),
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precursorEntity.getId(),
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precursorEntity.getManualOverwrite().getSection()
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.orElse(null));
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precursorEntity.getManualOverwrite().getSection().orElse(null));
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}
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correctEntity.setDeepestFullyContainingNode(closestEntity.getDeepestFullyContainingNode());
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correctEntity.setIntersectingNodes(new ArrayList<>(closestEntity.getIntersectingNodes()));
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@ -177,7 +177,7 @@ public class NerEntitiesAdapter {
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}
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private static List<Integer> sectionNumberToTreeId(String sectionNumber) {
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public static List<Integer> sectionNumberToTreeId(String sectionNumber) {
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return Arrays.stream(sectionNumber.split("\\."))
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.map(Integer::parseInt)
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@ -73,9 +73,10 @@ public class ComponentDroolsExecutionService {
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entities.add(Entity.fromEntityLogEntry(entry, document, entry.getStartOffset(), entry.getEndOffset()));
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if (entry.getDuplicatedTextRanges() != null && !entry.getDuplicatedTextRanges().isEmpty()) {
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entry.getDuplicatedTextRanges()
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.forEach(duplicatedTextRange -> {
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entities.add(Entity.fromEntityLogEntry(entry, document, duplicatedTextRange.getStart(), duplicatedTextRange.getEnd()));
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});
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.forEach(duplicatedTextRange -> entities.add(Entity.fromEntityLogEntry(entry,
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document,
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duplicatedTextRange.getStart(),
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duplicatedTextRange.getEnd())));
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}
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return entities.stream();
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})
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@ -16,6 +16,9 @@ project.version: 1.0-SNAPSHOT
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server:
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port: 8080
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lifecycle:
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base-package: com.iqser.red.service.redaction
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spring:
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application:
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name: redaction-service
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@ -14,6 +14,8 @@ dd MMMM yyyy
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d MMMM yyyy
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MMMM dd, yyyy
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MMMM d, yyyy
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MMMM, d yyyy
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MMMM d,yyyy
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dd.MM.yyyy
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d.MM.yyyy
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yyyy/MM/dd
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@ -28,6 +30,7 @@ dd['.'] MMM yyyy
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d['.'] MMM yyyy
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dd['th']['st']['nd']['rd'] 'of' MMMM, yyyy
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d['th']['st']['nd']['rd'] 'of' MMMM, yyyy
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d['st']['nd']['rd']['th'] MMMM yyyy
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MMMM dd['th']['st']['nd']['rd'], yyyy
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MMMM d['th']['st']['nd']['rd'], yyyy
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yyyy, MMMM dd
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@ -114,13 +114,14 @@ public abstract class AbstractRedactionIntegrationTest {
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public static final String PII_TYPE_ID = DICTIONARY_PII + ":" + TEST_DOSSIER_TEMPLATE_ID;
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public static final String TEST_METHOD_TYPE_ID = TEST_METHOD_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID;
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public static final String PUBLISHED_INFORMATION_TYPE_ID = PUBLISHED_INFORMATION_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID;
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public static final String DOSSIER_PUBLISHED_INFORMATION_TYPE_ID = PUBLISHED_INFORMATION_TYPE_ID+ ":" + TEST_DOSSIER_ID;
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public static final String DOSSIER_PUBLISHED_INFORMATION_TYPE_ID = PUBLISHED_INFORMATION_TYPE_ID + ":" + TEST_DOSSIER_ID;
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public static final String MUST_REDACT_TYPE_ID = MUST_REDACT_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID;
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public static final String HINT_ONLY_TYPE_ID = HINT_ONLY_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID;
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public static final String REDACTION_TYPE_ID = REDACTION_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID;
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public static final String NO_REDACTION_TYPE_ID = NO_REDACTION_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID;
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public static final String SPONSOR_TYPE_ID = DICTIONARY_SPONSOR + ":" + TEST_DOSSIER_TEMPLATE_ID;
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public static final String AUTHOR_TYPE_ID = DICTIONARY_AUTHOR + ":" + TEST_DOSSIER_TEMPLATE_ID;
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public static final String DOSSIER_AUTHOR_TYPE_ID = AUTHOR_TYPE_ID + ":" + TEST_DOSSIER_ID;
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public static final String ADDRESS_TYPE_ID = DICTIONARY_ADDRESS + ":" + TEST_DOSSIER_TEMPLATE_ID;
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public static final String VERTEBRATE_TYPE_ID = VERTEBRATE_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID;
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@ -250,8 +251,10 @@ public abstract class AbstractRedactionIntegrationTest {
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true));
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when(dictionaryClient.getDictionaryForType(IMPORTED_REDACTION_TYPE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(IMPORTED_REDACTION_INDICATOR,
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true));
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when(dictionaryClient.getDictionaryForType(DOSSIER_PUBLISHED_INFORMATION_TYPE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(PUBLISHED_INFORMATION_INDICATOR,
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true));
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when(dictionaryClient.getDictionaryForType(DOSSIER_PUBLISHED_INFORMATION_TYPE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(
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PUBLISHED_INFORMATION_INDICATOR,
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true));
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when(dictionaryClient.getDictionaryForType(DOSSIER_AUTHOR_TYPE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(DICTIONARY_AUTHOR, true));
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}
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@ -350,6 +353,7 @@ public abstract class AbstractRedactionIntegrationTest {
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.collect(Collectors.toSet()));
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dossierDictionary.put(IMPORTED_REDACTION_INDICATOR, new ArrayList<>());
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dossierDictionary.put(PUBLISHED_INFORMATION_INDICATOR, new ArrayList<>());
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dossierDictionary.put(DICTIONARY_AUTHOR, new ArrayList<>());
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falsePositive.computeIfAbsent(DICTIONARY_PII, v -> new ArrayList<>())
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.addAll(ResourceLoader.load("dictionaries/PII_false_positive.txt")
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@ -174,6 +174,16 @@ public class DocumineFloraTest extends AbstractRedactionIntegrationTest {
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expectedDates.add("03/08/1992");
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expectedDates.add("13/08/1992");
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expectedDates.add("27/02/1992");
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expectedDates.add("27/10/1989");
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expectedDates.add("07/10/1989");
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expectedDates.add("21/08/1998");
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expectedDates.add("02/08/1998");
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expectedDates.add("01/05/1988");
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expectedDates.add("02/06/2003");
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expectedDates.add("03/09/2005");
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expectedDates.add("06/09/2005");
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expectedDates.add("17/08/2005");
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expectedDates.add("22/08/2035");
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String dates = experimentalDates.getComponentValues()
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.get(0).getValue();
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@ -10,6 +10,7 @@ import java.time.OffsetDateTime;
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import java.util.ArrayList;
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import java.util.List;
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import java.util.Set;
|
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import java.util.UUID;
|
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import java.util.stream.Stream;
|
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|
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import org.junit.jupiter.api.BeforeEach;
|
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@ -25,24 +26,30 @@ import org.springframework.context.annotation.Configuration;
|
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import org.springframework.context.annotation.FilterType;
|
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import org.springframework.context.annotation.Import;
|
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import org.springframework.context.annotation.Primary;
|
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import org.springframework.core.io.ClassPathResource;
|
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import org.springframework.test.context.junit.jupiter.SpringExtension;
|
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|
||||
import com.iqser.red.commons.jackson.ObjectMapperFactory;
|
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import com.iqser.red.service.persistence.service.v1.api.shared.model.AnalyzeRequest;
|
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import com.iqser.red.service.persistence.service.v1.api.shared.model.AnalyzeResult;
|
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import com.iqser.red.service.persistence.service.v1.api.shared.model.RuleFileType;
|
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import com.iqser.red.service.persistence.service.v1.api.shared.model.analysislog.entitylog.Engine;
|
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import com.iqser.red.service.persistence.service.v1.api.shared.model.analysislog.entitylog.EntityLog;
|
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import com.iqser.red.service.persistence.service.v1.api.shared.model.analysislog.entitylog.EntityLogEntry;
|
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import com.iqser.red.service.persistence.service.v1.api.shared.model.analysislog.entitylog.EntryState;
|
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import com.iqser.red.service.persistence.service.v1.api.shared.model.analysislog.entitylog.EntryType;
|
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import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.ManualRedactions;
|
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import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.Rectangle;
|
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import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.IdRemoval;
|
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import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.ManualRedactionEntry;
|
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import com.iqser.red.service.persistence.service.v1.api.shared.model.common.JSONPrimitive;
|
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import com.iqser.red.service.persistence.service.v1.api.shared.model.dossiertemplate.dossier.file.FileType;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.dossiertemplate.type.Type;
|
||||
import com.iqser.red.service.redaction.v1.server.annotate.AnnotateRequest;
|
||||
import com.iqser.red.service.redaction.v1.server.annotate.AnnotateResponse;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.utils.OsUtils;
|
||||
import com.iqser.red.service.redaction.v1.server.service.DictionaryService;
|
||||
import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
|
||||
import com.iqser.red.storage.commons.StorageAutoConfiguration;
|
||||
import com.iqser.red.storage.commons.service.StorageService;
|
||||
import com.iqser.red.storage.commons.utils.FileSystemBackedStorageService;
|
||||
@ -50,6 +57,8 @@ import com.knecon.fforesight.service.layoutparser.internal.api.queue.LayoutParsi
|
||||
import com.knecon.fforesight.service.layoutparser.processor.LayoutParsingServiceProcessorConfiguration;
|
||||
import com.knecon.fforesight.tenantcommons.TenantContext;
|
||||
|
||||
import lombok.SneakyThrows;
|
||||
|
||||
@ExtendWith(SpringExtension.class)
|
||||
@SpringBootTest(classes = Application.class, webEnvironment = SpringBootTest.WebEnvironment.RANDOM_PORT)
|
||||
@Import(RedactionIntegrationTest.RedactionIntegrationTestConfiguration.class)
|
||||
@ -103,6 +112,17 @@ public class RedactionAcceptanceTest extends AbstractRedactionIntegrationTest {
|
||||
.isRecommendation(recommendationTypeMap.get(DOSSIER_REDACTIONS_INDICATOR))
|
||||
.rank(rankTypeMap.get(DOSSIER_REDACTIONS_INDICATOR))
|
||||
.build(),
|
||||
Type.builder()
|
||||
.id(DOSSIER_AUTHOR_TYPE_ID)
|
||||
.type(DICTIONARY_AUTHOR)
|
||||
.dossierTemplateId(TEST_DOSSIER_TEMPLATE_ID)
|
||||
.dossierId(TEST_DOSSIER_ID)
|
||||
.hexColor("#ffe184")
|
||||
.isHint(hintTypeMap.get(DICTIONARY_AUTHOR))
|
||||
.isCaseInsensitive(caseInSensitiveMap.get(DICTIONARY_AUTHOR))
|
||||
.isRecommendation(recommendationTypeMap.get(DICTIONARY_AUTHOR))
|
||||
.rank(rankTypeMap.get(DICTIONARY_AUTHOR))
|
||||
.build(),
|
||||
Type.builder()
|
||||
.id(DOSSIER_PUBLISHED_INFORMATION_TYPE_ID)
|
||||
.type(PUBLISHED_INFORMATION_INDICATOR)
|
||||
@ -158,10 +178,10 @@ public class RedactionAcceptanceTest extends AbstractRedactionIntegrationTest {
|
||||
|
||||
var publishedInformationEntry1 = findEntityByTypeAndValue(entityLog, "published_information", "Oxford University Press").findFirst()
|
||||
.orElseThrow();
|
||||
assertThat(publishedInformationEntry1.getSection().startsWith("Paragraph:"));
|
||||
assertThat(publishedInformationEntry1.getSection()).startsWith("Paragraph:");
|
||||
var asyaLyon1 = findEntityByTypeAndValueAndSectionNumber(entityLog, "CBI_author", "Asya Lyon", publishedInformationEntry1.getContainingNodeId()).findFirst()
|
||||
.orElseThrow();
|
||||
assertThat(asyaLyon1.getSection().startsWith("Paragraph:"));
|
||||
assertThat(asyaLyon1.getSection()).startsWith("Paragraph:");
|
||||
assertEquals(EntryState.SKIPPED, asyaLyon1.getState());
|
||||
|
||||
var idRemoval = buildIdRemoval(publishedInformationEntry1.getId());
|
||||
@ -212,10 +232,10 @@ public class RedactionAcceptanceTest extends AbstractRedactionIntegrationTest {
|
||||
|
||||
var publishedInformationEntry1 = findEntityByTypeAndValue(entityLog, "published_information", "Oxford University Press").findFirst()
|
||||
.orElseThrow();
|
||||
assertThat(publishedInformationEntry1.getSection().startsWith("Paragraph:"));
|
||||
assertThat(publishedInformationEntry1.getSection()).startsWith("Paragraph:");
|
||||
var asyaLyon1 = findEntityByTypeAndValueAndSectionNumber(entityLog, "CBI_author", "Asya Lyon", publishedInformationEntry1.getContainingNodeId()).findFirst()
|
||||
.orElseThrow();
|
||||
assertThat(publishedInformationEntry1.getSection().startsWith("Paragraph:"));
|
||||
assertThat(publishedInformationEntry1.getSection()).startsWith("Paragraph:");
|
||||
assertEquals(EntryState.SKIPPED, asyaLyon1.getState());
|
||||
|
||||
var idRemoval = buildIdRemoval(publishedInformationEntry1.getId());
|
||||
@ -244,6 +264,7 @@ public class RedactionAcceptanceTest extends AbstractRedactionIntegrationTest {
|
||||
assertThat(dictionary.get(PUBLISHED_INFORMATION_INDICATOR).contains("Press")).isFalse();
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
public void testPublishedInformationRemovalAtDossierLevel() throws IOException {
|
||||
|
||||
@ -365,6 +386,75 @@ public class RedactionAcceptanceTest extends AbstractRedactionIntegrationTest {
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
@SneakyThrows
|
||||
void testNerEntitiesAfterReanalysis() {
|
||||
|
||||
String EFSA_SANITISATION_RULES = loadFromClassPath("drools/efsa_sanitisation.drl");
|
||||
when(rulesClient.getRules(TEST_DOSSIER_TEMPLATE_ID, RuleFileType.ENTITY)).thenReturn(JSONPrimitive.of(EFSA_SANITISATION_RULES));
|
||||
|
||||
ClassPathResource responseJson = new ClassPathResource("files/new/SYNGENTA_EFSA_sanitisation_GFL_v1 3.NER_ENTITIES.json");
|
||||
storageService.storeObject(TenantContext.getTenantId(),
|
||||
RedactionStorageService.StorageIdUtils.getStorageId(TEST_DOSSIER_ID, TEST_FILE_ID, FileType.NER_ENTITIES),
|
||||
responseJson.getInputStream());
|
||||
|
||||
String pdfFile = "files/new/SYNGENTA_EFSA_sanitisation_GFL_v1 3.pdf";
|
||||
|
||||
AnalyzeRequest request = uploadFileToStorage(pdfFile);
|
||||
|
||||
analyzeDocumentStructure(LayoutParsingType.REDACT_MANAGER, request);
|
||||
request.setAnalysisNumber(1);
|
||||
dossierDictionary.put(DICTIONARY_AUTHOR, new ArrayList<>());
|
||||
mockDictionaryCalls(0L);
|
||||
|
||||
analyzeService.analyze(request);
|
||||
|
||||
var entityLog = redactionStorageService.getEntityLog(TEST_DOSSIER_ID, TEST_FILE_ID);
|
||||
|
||||
String nerValue = "Osip S.";
|
||||
var nerEntity = findEntityByTypeAndValue(entityLog, DICTIONARY_AUTHOR, nerValue).findFirst()
|
||||
.orElseThrow();
|
||||
assertThat(nerEntity.getEngines()).contains(Engine.NER);
|
||||
|
||||
String dictionaryAddValue = "cooperation";
|
||||
ManualRedactionEntry manualRedactionEntry = ManualRedactionEntry.builder()
|
||||
.value(dictionaryAddValue)
|
||||
.type(DICTIONARY_AUTHOR)
|
||||
.user("user")
|
||||
.addToDossierDictionary(true)
|
||||
.positions(List.of(Rectangle.builder().topLeftX(180.748f).topLeftY(546.564f).width(56.592f).height(15.408f).page(1).build()))
|
||||
.type("dossier_redaction")
|
||||
.fileId(TEST_FILE_ID)
|
||||
.requestDate(OffsetDateTime.now())
|
||||
.annotationId(UUID.randomUUID().toString())
|
||||
.build();
|
||||
request.setManualRedactions(ManualRedactions.builder().entriesToAdd(Set.of(manualRedactionEntry)).build());
|
||||
|
||||
request.setAnalysisNumber(2);
|
||||
dossierDictionary.get(DICTIONARY_AUTHOR).add(dictionaryAddValue);
|
||||
reanlysisVersions.put(dictionaryAddValue, 2L);
|
||||
when(dictionaryClient.getVersionForDossier(TEST_DOSSIER_ID)).thenReturn(2L);
|
||||
mockDictionaryCalls(1L);
|
||||
|
||||
AnalyzeResult reanalyzeResult = analyzeService.reanalyze(request);
|
||||
|
||||
entityLog = redactionStorageService.getEntityLog(TEST_DOSSIER_ID, TEST_FILE_ID);
|
||||
|
||||
EntityLogEntry entityLogEntryAdded = entityLog.getEntityLogEntry()
|
||||
.stream()
|
||||
.filter(entityLogEntry -> entityLogEntry.getValue().equals(dictionaryAddValue))
|
||||
.findFirst()
|
||||
.get();
|
||||
assertEquals(EntryState.APPLIED, entityLogEntryAdded.getState());
|
||||
|
||||
nerEntity = findEntityByTypeAndValue(entityLog, DICTIONARY_AUTHOR, nerValue).findFirst()
|
||||
.orElseThrow();
|
||||
assertThat(nerEntity.getEngines()).contains(Engine.NER);
|
||||
dossierDictionary.get(DICTIONARY_AUTHOR).remove(dictionaryAddValue);
|
||||
|
||||
}
|
||||
|
||||
|
||||
private static IdRemoval buildIdRemoval(String id) {
|
||||
|
||||
return IdRemoval.builder().annotationId(id).user("user").requestDate(OffsetDateTime.now()).fileId(TEST_FILE_ID).build();
|
||||
|
||||
@ -43,7 +43,17 @@ public class DateConverterTest {
|
||||
"28 March 2018 (animal 1 - 5000 mg/kg bw)",
|
||||
"28 March 2018 (animal1 - 5000 mg/kg bw)",
|
||||
"28 August 2018 (animal 1)",
|
||||
"31 August 2018 (animal 1)");
|
||||
"31 August 2018 (animal 1)",
|
||||
"October, 27 1989",
|
||||
"October, 7 1989",
|
||||
"August 21,1998",
|
||||
"August 2,1998",
|
||||
"1st May 1988",
|
||||
"2nd June 2003",
|
||||
"3rd September 2005",
|
||||
"6th September 2005",
|
||||
"17th August 2005",
|
||||
"22nd August 2035");
|
||||
|
||||
for (String dateStr : goldenStandardDates) {
|
||||
Optional<Date> parsedDate = DateConverter.parseDate(dateStr);
|
||||
|
||||
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Reference in New Issue
Block a user