ignore mc files

.gitignore

@@ -42,3 +42,5 @@ gradlew.bat
 gradlew
 gradle.properties
 gradle/
+.DS_Store
+.DS_Store/

layoutparser-service/layoutparser-service-processor/build.gradle.kts

@@ -25,5 +25,4 @@ dependencies {
     implementation("com.fasterxml.jackson.datatype:jackson-datatype-jsr310:${jacksonVersion}")
     implementation("org.springframework.boot:spring-boot-starter-web:3.1.3")
     implementation("org.jgrapht:jgrapht-core:1.5.2")
-    implementation("org.tinspin:tinspin-indexes:2.1.3")
 }

layoutparser-service/layoutparser-service-processor/src/main/java/com/knecon/fforesight/service/layoutparser/processor/docstrum/service/NearestNeighbourService.java

@@ -1,10 +1,10 @@
 package com.knecon.fforesight.service.layoutparser.processor.docstrum.service;
 
+import java.util.ArrayList;
+import java.util.Comparator;
 import java.util.List;
 
 import org.springframework.stereotype.Service;
-import org.tinspin.index.Index;
-import org.tinspin.index.kdtree.KDTree;
 
 import com.knecon.fforesight.service.layoutparser.processor.docstrum.model.Character;
 import com.knecon.fforesight.service.layoutparser.processor.docstrum.model.Neighbor;
@@ -13,23 +13,115 @@ import com.knecon.fforesight.service.layoutparser.processor.docstrum.model.Neigh
 public class NearestNeighbourService {
 
     private static final int NUMBER_OF_NEIGHBOURS = 8;
+    private static final double STEP = 16.0;
 
 
     public void findNearestNeighbors(List<Character> characters) {
-        KDTree<Character> kdTree = KDTree.create(2);
-        characters.forEach(c -> kdTree.insert(new double[]{c.getX(), c.getY()}, c));
 
-        for(Character c : characters) {
-            Index.PointIteratorKnn<Character> iterator = kdTree.queryKnn(new double[]{c.getX(), c.getY()}, NUMBER_OF_NEIGHBOURS + 1);
-            // skip the first as this is identity
-            if(iterator.hasNext()) {
-                iterator.next();
-            }
-            while(iterator.hasNext()) {
-                c.getNeighbors().add(new Neighbor(iterator.next().value(), c));
-            }
+        if (characters.isEmpty() || characters.size() == 1) {
+            return;
         }
 
+        characters.sort(Comparator.comparingDouble(Character::getX));
+
+        int maxNeighborCount = NUMBER_OF_NEIGHBOURS;
+        if (characters.size() <= NUMBER_OF_NEIGHBOURS) {
+            maxNeighborCount = characters.size() - 1;
+        }
+
+        for (int i = 0; i < characters.size(); i++) {
+
+            Neighbor[] candidates = new Neighbor[maxNeighborCount + 1];
+            int neighborInsertionIndex = 0;
+            int neighborCount = 0;
+            int start = i;
+            int end = i + 1;
+
+            double distance = Double.POSITIVE_INFINITY;
+
+            for (double searchDistance = 0; searchDistance < distance; ) {
+
+                searchDistance += STEP;
+                boolean newCandidatesFound = false;
+
+                while (start > 0 && characters.get(i).getX() - characters.get(start - 1).getX() < searchDistance) {
+                    start--;
+                    candidates[neighborInsertionIndex] = new Neighbor(characters.get(start), characters.get(i));
+                    neighborCount++;
+                    if (neighborCount > maxNeighborCount) {
+                        neighborInsertionIndex = clearMostDistant(candidates);
+                        neighborCount--;
+                    } else {
+                        neighborInsertionIndex++;
+                    }
+                    newCandidatesFound = true;
+                }
+
+                while (end < characters.size() && characters.get(end).getX() - characters.get(i).getX() < searchDistance) {
+                    candidates[neighborInsertionIndex] = new Neighbor(characters.get(end), characters.get(i));
+                    neighborCount++;
+                    if (neighborCount > maxNeighborCount) {
+                        neighborInsertionIndex = clearMostDistant(candidates);
+                        neighborCount--;
+                    } else {
+                        neighborInsertionIndex++;
+                    }
+                    end++;
+                    newCandidatesFound = true;
+                }
+
+                if (newCandidatesFound && neighborCount >= maxNeighborCount) {
+                    distance = maxDistance(candidates);
+                }
+            }
+            if (neighborCount < maxNeighborCount) {
+                clearMostDistant(candidates);
+            }
+
+            List<Neighbor> candidatesList = new ArrayList<>(maxNeighborCount);
+            for (Neighbor candidate : candidates) {
+                if (candidate != null) {
+                    candidatesList.add(candidate);
+                }
+            }
+            candidatesList.sort(Comparator.comparingDouble(Neighbor::getDistance));
+            assert candidatesList.size() == maxNeighborCount;
+            characters.get(i).setNeighbors(candidatesList);
+        }
+    }
+
+
+    private double maxDistance(Neighbor[] candidates) {
+
+        double maxDistance = 0;
+        for (Neighbor candidate : candidates) {
+            if (candidate == null) {
+                continue;
+            }
+            if (candidate.getDistance() > maxDistance) {
+                maxDistance = candidate.getDistance();
+            }
+        }
+        return maxDistance;
+    }
+
+
+    private int clearMostDistant(Neighbor[] candidates) {
+
+        double maxDistance = 0;
+        int maxIndex = 0;
+        for (int i = 0; i < candidates.length; i++) {
+            Neighbor candidate = candidates[i];
+            if (candidate == null) {
+                continue;
+            }
+            if (candidate.getDistance() > maxDistance) {
+                maxDistance = candidate.getDistance();
+                maxIndex = i;
+            }
+        }
+        candidates[maxIndex] = null;
+        return maxIndex;
     }
 
 }

layoutparser-service/layoutparser-service-processor/src/main/java/com/knecon/fforesight/service/layoutparser/processor/docstrum/service/ZoneBuilderService.java

@@ -65,7 +65,7 @@ public class ZoneBuilderService {
 
         List<Zone> zones = new ArrayList<>();
         unionFind.getGroups().forEach(group -> {
-            zones.add(mergeLinesInZone(new ArrayList<>(group), characterSpacing, lineSpacing));
+            zones.add(new Zone(new ArrayList<>(group)));
         });
 
         if (zones.size() > MAX_ZONES) {

layoutparser-service/layoutparser-service-processor/src/main/java/com/knecon/fforesight/service/layoutparser/processor/services/blockification/DocstrumBlockificationService.java

@@ -14,7 +14,6 @@ import org.springframework.stereotype.Service;
 
 import com.knecon.fforesight.service.layoutparser.processor.docstrum.DocstrumSegmentationService;
 import com.knecon.fforesight.service.layoutparser.processor.docstrum.model.Zone;
-import com.knecon.fforesight.service.layoutparser.processor.docstrum.utils.DoubleUtils;
 import com.knecon.fforesight.service.layoutparser.processor.model.AbstractPageBlock;
 import com.knecon.fforesight.service.layoutparser.processor.model.ClassificationPage;
 import com.knecon.fforesight.service.layoutparser.processor.model.FloatFrequencyCounter;
@@ -54,13 +53,13 @@ public class DocstrumBlockificationService {
         });
 
         var zones = docstrumSegmentationService.segmentPage(textPositions, xyOrder);
-        var pageBlocks = toAbstractPageBlocks(zones, usedHorizonalRulings, usedVerticalRulings, xyOrder);
+        var pageBlocks = toAbstractPageBlocks(zones, usedHorizonalRulings, usedVerticalRulings);
 
         return new ClassificationPage(pageBlocks);
     }
 
 
-    private List<AbstractPageBlock> toAbstractPageBlocks(List<Zone> zones, List<Ruling> horizontalRulings, List<Ruling> verticalRulings, boolean xyOrder) {
+    private List<AbstractPageBlock> toAbstractPageBlocks(List<Zone> zones, List<Ruling> horizontalRulings, List<Ruling> verticalRulings) {
 
         List<AbstractPageBlock> abstractPageBlocks = new ArrayList<>();
         zones.forEach(zone -> {
@@ -75,12 +74,6 @@ public class DocstrumBlockificationService {
             abstractPageBlocks.addAll(splitZonesAtRulings(textPositionSequences, horizontalRulings, verticalRulings));
         });
 
-
-        if (xyOrder) {
-            abstractPageBlocks.sort(Comparator.comparing(AbstractPageBlock::getMinY, (o1, o2) -> DoubleUtils.compareDouble(o1, o2, THRESHOLD))
-                                            .thenComparing(AbstractPageBlock::getMinX, (o1, o2) -> DoubleUtils.compareDouble(o1, o2, THRESHOLD)));
-        }
-
         return abstractPageBlocks;
     }
 
@@ -95,7 +88,6 @@ public class DocstrumBlockificationService {
 
             AbstractPageBlock block = itty.next();
             if (block instanceof TablePageBlock) {
-                previous = new TextPageBlock();
                 continue;
             }
             TextPageBlock current = (TextPageBlock) block;

layoutparser-service/layoutparser-service-server/src/test/java/com/knecon/fforesight/service/layoutparser/server/graph/ViewerDocumentTest.java

@@ -27,7 +27,7 @@ public class ViewerDocumentTest extends BuildDocumentTest {
     @SneakyThrows
     public void testViewerDocument() {
 
-        String fileName = "files/S-Metolachlor_RAR_01_Volume_1_2018-09-06.pdf";
+        String fileName = "files/bdr/notMergedParagraphs.pdf";
         String tmpFileName = "/tmp/" + Path.of(fileName).getFileName() + "_VIEWER.pdf";
 
         var documentFile = new ClassPathResource(fileName).getFile();
@@ -35,7 +35,7 @@ public class ViewerDocumentTest extends BuildDocumentTest {
         LayoutGridService layoutGridService = new LayoutGridService(viewerDocumentService);
 
         long start = System.currentTimeMillis();
-        Document document = buildGraph(fileName, LayoutParsingType.REDACT_MANAGER);
+        Document document = buildGraph(fileName, LayoutParsingType.CLARIFYND);
         layoutGridService.addLayoutGrid(documentFile, document, new File(tmpFileName), true);
         System.out.printf("Total time: %.2fs%n", ((float) (System.currentTimeMillis() - start)) / 1000);
     }
@@ -59,7 +59,7 @@ public class ViewerDocumentTest extends BuildDocumentTest {
                 new ImageServiceResponse(),
                 tableResponse,
                 new VisualLayoutParsingResponse(),
-                Map.of("file", Path.of(fileName).getFileName().toFile().toString()));
+                Map.of("file",Path.of(fileName).getFileName().toFile().toString()));
         ViewerDocumentService viewerDocumentService = new ViewerDocumentService(null);
         LayoutGridService layoutGridService = new LayoutGridService(viewerDocumentService);
         Document document = DocumentGraphFactory.buildDocumentGraph(LayoutParsingType.DOCUMINE, classificationDocument);