Compare commits

...
44 Commits
Author SHA1 Message Date
Kilian Schüttler e2a5b85c4a Merge branch 'RED-9148-backport' into 'release/0.78.x'
RED-9149 - Header and footer detection by page-association

See merge request fforesight/layout-parser!151
2024-05-13 14:57:51 +02:00
Andrei Isvoran d5a4dd4d42 RED-9149 - Header and footer detection by page-association 2024-05-13 14:57:51 +02:00
Dominique Eifländer acd6d7f164 Merge branch 'RED-8933-0.78' into 'release/0.78.x'
Red 8933 0.78

See merge request fforesight/layout-parser!147
2024-05-08 11:22:03 +02:00
Dominique Eifländer 71025f7f16 RED-9129: Track pagestatistics also for landscape pages in documine 2024-05-08 10:50:55 +02:00
Dominique Eifländer ae6bad830e RED-8933: Fixed bugs in DocumineClassificationService 2024-05-08 10:50:55 +02:00
Dominique Eifländer e030ec9dd2 Merge branch 'RED-9103' into 'release/0.78.x'
RED-9103: Fixed save of document viewer file

See merge request fforesight/layout-parser!144
2024-05-02 13:03:38 +02:00
Dominique Eifländer 49139ee603 RED-9103: Fixed save of document viewer file 2024-05-02 12:55:14 +02:00
Dominique Eifländer 07da43f2d9 hotfix: revert layoutparsingResponseQueue changes that is not in persistence-service, should be done in migration to 4.0.0 2024-04-24 15:24:19 +02:00
Dominique Eifländer df0bbc92c7 RED-8932 Fixed not merged headline with identifier 2024-04-24 11:38:26 +02:00
Kilian Schüttler 0497d764ec Merge branch 'hotfix' into 'release/0.78.x'
hotfix: remove DLQ for layoutparsing finished queue

See merge request fforesight/layout-parser!129
2024-04-08 15:39:04 +02:00
Kilian Schuettler 1362e4fbb2 hotfix: remove DLQ for layoutparsing finished queue 2024-04-08 15:31:35 +02:00
Dominique Eifländer 665ad40b0b RED-8627: Fixed scrambled text after sorting 2024-03-19 14:46:04 +01:00
Dominique Eifländer e2bcf971c9 Merge branch 'DM-589' into 'main'
DM-589: Filter wrong detected cells that borders from rotation at scanning

See merge request fforesight/layout-parser!83
2023-11-20 16:07:27 +01:00
Dominique Eifländer dacc2f7f43 DM-589: Filter wrong detected cells that borders from rotation at scanning 2023-11-20 15:54:02 +01:00
Dominique Eifländer 144a9591a2 Merge branch 'TAAS-103-hotfix' into 'main'
* added back in if statement

See merge request fforesight/layout-parser!82
2023-11-16 12:48:48 +01:00
yhampe 207d9dec97 * added back in if statement
* removed not needed commentar
2023-11-16 12:40:49 +01:00
Yannik Hampe 09ee90222e Merge branch 'TAAS-103' into 'main'
TAAS-103: Table Detection and rotated text

See merge request fforesight/layout-parser!81
2023-11-16 09:13:41 +01:00
yhampe 1316a067fe * removed double chechking for height of cell 2023-11-16 08:51:12 +01:00
yhampe e203210ade * removed not needed properties 2023-11-16 08:23:58 +01:00
yhampe b25d46291a * checkstyle 2023-11-16 08:12:47 +01:00
yhampe 84148d3b6e * fixed tests 2023-11-16 07:51:08 +01:00
Dominique Eifländer a6ba66b1aa TAAS-103: Fixed values in wrong cells 2023-11-15 13:36:46 +01:00
yhampe c3e69b2cdf * fixed bug with incorrect empty cell count by adding threshhold to cell.contains 2023-11-15 10:44:47 +01:00
yhampe f69331e7d8 *renamed page to firstPage in DocumentStructure and Table 2023-11-07 10:21:19 +01:00
yhampe 01493dc033 TAAS-103: Table Detection and rotated text
* added page property to DocumentStructure to be able to get page of found tables

* added a method to TableExtractionService to get the table area

* added calculateMinCharWidthAndMaxCharHeightInsideTable to LayoutParsingPipeline to calculate the values based upon table area

* refactored PDFLinesTextStripper for better readability

*removed textMatrix from RedTextPosition as it is no longer needed
2023-11-07 08:47:28 +01:00
yhampe 459e0c8be7 TAAS-103: 2023-11-07 08:39:15 +01:00
Kilian Schüttler 1b1f777706 Merge branch 'RED-7806' into 'main'
RED-7806 - Specific customer document cannot be processed

See merge request fforesight/layout-parser!79
2023-10-25 10:50:34 +02:00
Corina Olariu 0e0a811f9d RED-7806 - Specific customer document cannot be processed
- add brackets
2023-10-25 11:36:54 +03:00
Corina Olariu efa3d75479 RED-7806 - Specific customer document cannot be processed
- check for font name null before using to avoid the NPE
2023-10-25 09:16:47 +03:00
Kilian Schüttler 9abdc6d44d Merge branch 'RED-7434' into 'main'
RED-7434 - Remove Section Grid entirely

See merge request fforesight/layout-parser!78
2023-10-20 10:07:01 +02:00
Corina Olariu 3bab61c446 RED-7434 - Remove Section Grid entirely
- remove sectionGrid relation (including SectionGridCreatorService)
- update junit tests
2023-10-20 09:09:22 +03:00
Dominique Eifländer d17517d3c3 Merge branch 'hotfix-bdr-doc' into 'main'
hotfix: Fixed parsing for specific taas document

See merge request fforesight/layout-parser!77
2023-10-18 16:12:15 +02:00
Dominique Eifländer 567cbc178b hotfix: Fixed parsing for specific taas document 2023-10-17 15:52:19 +02:00
Kilian Schüttler 3c53772765 Merge branch 'RED-7759' into 'main'
RED-7759: Upgraded storage-commons to newest windwos compatible version

See merge request fforesight/layout-parser!76
2023-10-13 12:21:04 +02:00
Dominique Eifländer 8647cf5a18 RED-7759: Upgraded storage-commons to newest windwos compatible version 2023-10-13 12:15:22 +02:00
Kilian Schüttler 310c07b200 Merge branch 'RED-7607-WIP' into 'main'
RED-7607 - Rotating pages leads to lost annotations (RM & DM)

See merge request fforesight/layout-parser!75
2023-10-05 13:34:12 +02:00
Corina Olariu daba0bf8a6 RED-7607 - Rotating pages leads to lost annotations (RM & DM)
- remove finally clause
2023-10-04 17:46:46 +03:00
Corina Olariu 3839de215c RED-7607 - Rotating pages leads to lost annotations (RM & DM)
- rollback to getDir().getDegrees()
2023-10-04 15:27:13 +03:00
Corina Olariu b4d68594f1 RED-7607 - Rotating pages leads to lost annotations (RM & DM)
- use rotation instead of getDir().getDegrees()
2023-10-04 14:22:15 +03:00
Corina Olariu 99ed331a1e RED-7607 - Rotating pages leads to lost annotations (RM & DM)
- use getXDirAdj instead of getX
- add fontSizeCounter for landscape pages also
2023-10-04 14:13:38 +03:00
Corina Olariu f2c0991987 RED-7607 - Rotating pages leads to lost annotations (RM & DM)
- fix PMD findings
2023-10-04 14:09:46 +03:00
Timo Bejan b8ef55e6e2 Merge branch 'TAAS-104' into 'main'
TAAS-104: merge visually intersecting Paragraphs

See merge request fforesight/layout-parser!73
2023-09-05 17:08:40 +02:00
Kilian Schuettler 5792ff4a93 TAAS-104: merge visually intersecting Paragraphs
* fix build
2023-09-05 16:54:23 +02:00
Kilian Schuettler 621c3f269d TAAS-104: merge visually intersecting Paragraphs 2023-09-05 16:09:05 +02:00
41 changed files with 905 additions and 575 deletions
+3 -1
View File
@@ -16,6 +16,8 @@ deploy:
reports:
dotenv: version.env
rules:
- if: $CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH
- if: $CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH
- if: $CI_COMMIT_BRANCH =~ /^release/
- if: $CI_COMMIT_TAG
pmd:
allow_failure: true
@@ -36,9 +36,6 @@ public record LayoutParsingRequest(
@Schema(description = "Path where the Simplified Text File will be stored.")//
@NonNull String simplifiedTextStorageId,//
@Schema(description = "Path where the Viewer Document PDF will be stored.")//
@NonNull String viewerDocumentStorageId,//
@Deprecated//
@Schema(description = "Path where the Section Grid will be stored.")//
@NonNull String sectionGridStorageId) {
@NonNull String viewerDocumentStorageId) {
}
@@ -35,7 +35,6 @@ import com.knecon.fforesight.service.layoutparser.processor.python_api.model.tab
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.TableServiceResponse;
import com.knecon.fforesight.service.layoutparser.processor.services.BodyTextFrameService;
import com.knecon.fforesight.service.layoutparser.processor.services.RulingCleaningService;
import com.knecon.fforesight.service.layoutparser.processor.services.SectionGridCreatorService;
import com.knecon.fforesight.service.layoutparser.processor.services.SectionsBuilderService;
import com.knecon.fforesight.service.layoutparser.processor.services.SimplifiedSectionTextService;
import com.knecon.fforesight.service.layoutparser.processor.services.TableExtractionService;
@@ -65,7 +64,6 @@ public class LayoutParsingPipeline {
private final CvTableParsingAdapter cvTableParsingAdapter;
private final LayoutParsingStorageService layoutParsingStorageService;
private final SectionsBuilderService sectionsBuilderService;
private final SectionGridCreatorService sectionGridCreatorService;
private final TaasClassificationService taasClassificationService;
private final RedactManagerClassificationService redactManagerClassificationService;
private final DocuMineClassificationService docuMineClassificationService;
@@ -85,13 +83,17 @@ public class LayoutParsingPipeline {
try (PDDocument originDocument = layoutParsingStorageService.getOriginFile(layoutParsingRequest.originFileStorageId())) {
ImageServiceResponse imageServiceResponse = new ImageServiceResponse();
if (layoutParsingRequest.imagesFileStorageId().isPresent()) {
imageServiceResponse = layoutParsingStorageService.getImagesFile(layoutParsingRequest.imagesFileStorageId().get());
if (layoutParsingRequest.imagesFileStorageId()
.isPresent()) {
imageServiceResponse = layoutParsingStorageService.getImagesFile(layoutParsingRequest.imagesFileStorageId()
.get());
}
TableServiceResponse tableServiceResponse = new TableServiceResponse();
if (layoutParsingRequest.tablesFileStorageId().isPresent()) {
tableServiceResponse = layoutParsingStorageService.getTablesFile(layoutParsingRequest.tablesFileStorageId().get());
if (layoutParsingRequest.tablesFileStorageId()
.isPresent()) {
tableServiceResponse = layoutParsingStorageService.getTablesFile(layoutParsingRequest.tablesFileStorageId()
.get());
}
ClassificationDocument classificationDocument = parseLayout(layoutParsingRequest.layoutParsingType(), originDocument, imageServiceResponse, tableServiceResponse);
@@ -99,7 +101,6 @@ public class LayoutParsingPipeline {
int numberOfPages = originDocument.getNumberOfPages();
layoutParsingStorageService.storeSectionGrid(layoutParsingRequest, sectionGridCreatorService.createSectionGrid(documentGraph));
layoutParsingStorageService.storeDocumentData(layoutParsingRequest, DocumentDataMapper.toDocumentData(documentGraph));
layoutParsingStorageService.storeSimplifiedText(layoutParsingRequest, simplifiedSectionTextService.toSimplifiedText(documentGraph));
@@ -118,25 +119,25 @@ public class LayoutParsingPipeline {
.numberOfPages(numberOfPages)
.duration(System.currentTimeMillis() - start)
.message(format("""
Layout parsing has finished in %.02f s.
identifiers: %s
%s
Files have been saved with Ids:
Structure: %s
Text: %s
Positions: %s
PageData: %s
Simplified Text: %s
Viewer Doc: %s""",
((float) (System.currentTimeMillis() - start)) / 1000,
layoutParsingRequest.identifier(),
buildSemanticNodeCountMessage(numberOfPages, documentGraph.buildSemanticNodeCounts()),
layoutParsingRequest.structureFileStorageId(),
layoutParsingRequest.textBlockFileStorageId(),
layoutParsingRequest.positionBlockFileStorageId(),
layoutParsingRequest.pageFileStorageId(),
layoutParsingRequest.simplifiedTextStorageId(),
layoutParsingRequest.viewerDocumentStorageId()))
Layout parsing has finished in %.02f s.
identifiers: %s
%s
Files have been saved with Ids:
Structure: %s
Text: %s
Positions: %s
PageData: %s
Simplified Text: %s
Viewer Doc: %s""",
((float) (System.currentTimeMillis() - start)) / 1000,
layoutParsingRequest.identifier(),
buildSemanticNodeCountMessage(numberOfPages, documentGraph.buildSemanticNodeCounts()),
layoutParsingRequest.structureFileStorageId(),
layoutParsingRequest.textBlockFileStorageId(),
layoutParsingRequest.positionBlockFileStorageId(),
layoutParsingRequest.pageFileStorageId(),
layoutParsingRequest.simplifiedTextStorageId(),
layoutParsingRequest.viewerDocumentStorageId()))
.build();
}
}
@@ -145,14 +146,14 @@ public class LayoutParsingPipeline {
private String buildSemanticNodeCountMessage(int numberOfPages, Map<NodeType, Long> semanticNodeCounts) {
return String.format("%d pages with %d sections, %d headlines, %d paragraphs, %d tables with %d cells, %d headers, and %d footers parsed",
numberOfPages,
semanticNodeCounts.get(NodeType.SECTION),
semanticNodeCounts.get(NodeType.HEADLINE),
semanticNodeCounts.get(NodeType.PARAGRAPH),
semanticNodeCounts.get(NodeType.TABLE),
semanticNodeCounts.get(NodeType.TABLE_CELL),
semanticNodeCounts.get(NodeType.HEADER),
semanticNodeCounts.get(NodeType.FOOTER));
numberOfPages,
semanticNodeCounts.get(NodeType.SECTION) == null ? 0 : semanticNodeCounts.get(NodeType.SECTION),
semanticNodeCounts.get(NodeType.HEADLINE) == null ? 0 : semanticNodeCounts.get(NodeType.HEADLINE),
semanticNodeCounts.get(NodeType.PARAGRAPH) == null ? 0 : semanticNodeCounts.get(NodeType.PARAGRAPH),
semanticNodeCounts.get(NodeType.TABLE) == null ? 0 : semanticNodeCounts.get(NodeType.TABLE),
semanticNodeCounts.get(NodeType.TABLE_CELL) == null ? 0 : semanticNodeCounts.get(NodeType.TABLE_CELL),
semanticNodeCounts.get(NodeType.HEADER) == null ? 0 : semanticNodeCounts.get(NodeType.HEADER),
semanticNodeCounts.get(NodeType.FOOTER) == null ? 0 : semanticNodeCounts.get(NodeType.FOOTER));
}
@@ -190,10 +191,7 @@ public class LayoutParsingPipeline {
boolean isLandscape = pdr.getWidth() > pdr.getHeight() && (rotation == 0 || rotation == 180) || pdr.getHeight() > pdr.getWidth() && (rotation == 90 || rotation == 270);
PDRectangle cropbox = pdPage.getCropBox();
CleanRulings cleanRulings = rulingCleaningService.getCleanRulings(pdfTableCells.get(pageNumber),
stripper.getRulings(),
stripper.getMinCharWidth(),
stripper.getMaxCharHeight());
CleanRulings cleanRulings = rulingCleaningService.getCleanRulings(pdfTableCells.get(pageNumber), stripper.getRulings());
ClassificationPage classificationPage = switch (layoutParsingType) {
case REDACT_MANAGER -> redactManagerBlockificationService.blockify(stripper.getTextPositionSequences(), cleanRulings.getHorizontal(), cleanRulings.getVertical());
@@ -216,9 +214,10 @@ public class LayoutParsingPipeline {
imageServiceResponseAdapter.findOcr(classificationPage);
}
tableExtractionService.extractTables(cleanRulings, classificationPage, layoutParsingType);
tableExtractionService.extractTables(cleanRulings, classificationPage);
buildPageStatistics(classificationPage);
increaseDocumentStatistics(classificationPage, classificationDocument);
increaseDocumentStatistics(layoutParsingType, classificationPage, classificationDocument);
classificationPages.add(classificationPage);
}
@@ -247,9 +246,9 @@ public class LayoutParsingPipeline {
}
private void increaseDocumentStatistics(ClassificationPage classificationPage, ClassificationDocument document) {
private void increaseDocumentStatistics(LayoutParsingType layoutParsingType, ClassificationPage classificationPage, ClassificationDocument document) {
if (!classificationPage.isLandscape()) {
if (layoutParsingType.equals(LayoutParsingType.DOCUMINE) || !classificationPage.isLandscape()) {
document.getFontSizeCounter().addAll(classificationPage.getFontSizeCounter().getCountPerValue());
}
document.getFontCounter().addAll(classificationPage.getFontCounter().getCountPerValue());
@@ -17,7 +17,6 @@ import org.apache.pdfbox.pdmodel.PDDocument;
import org.springframework.stereotype.Service;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.iqser.red.service.persistence.service.v1.api.shared.model.redactionlog.section.SectionGrid;
import com.iqser.red.storage.commons.service.StorageService;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.DocumentData;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.SimplifiedText;
@@ -84,11 +83,6 @@ public class LayoutParsingStorageService {
}
public void storeSectionGrid(LayoutParsingRequest layoutParsingRequest, SectionGrid sectionGrid) {
storageService.storeJSONObject(TenantContext.getTenantId(), layoutParsingRequest.sectionGridStorageId(), sectionGrid);
}
public void storeResearchDocumentData(LayoutParsingRequest layoutParsingRequest, ResearchDocumentData researchDocumentData) {
@@ -72,9 +72,27 @@ public abstract class AbstractPageBlock {
}
public boolean intersectsY(AbstractPageBlock atc) {
public boolean intersectsY(AbstractPageBlock apb) {
return this.minY <= atc.getMaxY() && this.maxY >= atc.getMinY();
return this.minY <= apb.getMaxY() && this.maxY >= apb.getMinY();
}
public boolean almostIntersects(AbstractPageBlock apb, float yThreshold, float xThreshold) {
return this.almostIntersectsX(apb, xThreshold) && this.almostIntersectsY(apb, yThreshold);
}
private boolean almostIntersectsY(AbstractPageBlock apb, float threshold) {
return this.minY - threshold <= apb.getMaxY() && this.maxY + threshold >= apb.getMinY();
}
private boolean almostIntersectsX(AbstractPageBlock apb, float threshold) {
return this.minX - threshold <= apb.getMaxX() && this.maxX + threshold >= apb.getMinX();
}
@@ -3,7 +3,6 @@ package com.knecon.fforesight.service.layoutparser.processor.model;
import java.util.ArrayList;
import java.util.List;
import com.iqser.red.service.persistence.service.v1.api.shared.model.redactionlog.section.SectionGrid;
import com.knecon.fforesight.service.layoutparser.processor.model.text.StringFrequencyCounter;
import com.knecon.fforesight.service.layoutparser.processor.model.text.UnclassifiedText;
@@ -25,7 +24,6 @@ public class ClassificationDocument {
private StringFrequencyCounter fontStyleCounter = new StringFrequencyCounter();
private boolean headlines;
private SectionGrid sectionGrid = new SectionGrid();
private long rulesVersion;
}
@@ -34,7 +34,6 @@ public class Table implements SemanticNode {
int numberOfRows;
int numberOfCols;
TextBlock textBlock;
@Builder.Default
@@ -208,7 +207,6 @@ public class Table implements SemanticNode {
return IntStream.range(0, numberOfCols).boxed().map(col -> getCell(row, col));
}
/**
* Streams all TableCells row-wise and filters them with header == true.
*
@@ -1,12 +1,14 @@
package com.knecon.fforesight.service.layoutparser.processor.model.table;
import java.awt.geom.Point2D;
import java.awt.geom.Rectangle2D;
import java.util.ArrayList;
import java.util.Collections;
import java.util.HashSet;
import java.util.List;
import java.util.Set;
import java.util.TreeMap;
import java.util.stream.Collectors;
import com.knecon.fforesight.service.layoutparser.processor.model.AbstractPageBlock;
import com.knecon.fforesight.service.layoutparser.processor.model.PageBlockType;
@@ -252,7 +254,8 @@ public class TablePageBlock extends AbstractPageBlock {
if (prevY != null && prevX != null) {
var cell = new Cell(new Point2D.Float(prevX, prevY), new Point2D.Float(x, y));
var intersectionCell = cells.stream().filter(c -> cell.intersects(c) && cell.overlapRatio(c) > 0.1f).findFirst();
var intersectionCell = cells.stream().filter(c -> intersects(cell, c)).findFirst();
intersectionCell.ifPresent(value -> cell.getTextBlocks().addAll(value.getTextBlocks()));
if (cell.hasMinimumSize()) {
row.add(cell);
@@ -273,6 +276,21 @@ public class TablePageBlock extends AbstractPageBlock {
}
public boolean intersects(Cell cell1, Cell cell2) {
if (cell1.getHeight() <= 0 || cell2.getHeight() <= 0) {
return false;
}
double x0 = cell1.getX() + 2;
double y0 = cell1.getY() + 2;
return (cell2.x + cell2.width > x0 &&
cell2.y + cell2.height > y0 &&
cell2.x < x0 + cell1.getWidth() -2 &&
cell2.y < y0 + cell1.getHeight() -2);
}
@Override
public String getText() {
@@ -17,7 +17,6 @@ import lombok.SneakyThrows;
@AllArgsConstructor
public class RedTextPosition {
private String textMatrix;
private float[] position;
@JsonIgnore
@@ -56,8 +55,6 @@ public class RedTextPosition {
pos.setFontSizeInPt(textPosition.getFontSizeInPt());
pos.setTextMatrix(textPosition.getTextMatrix().toString());
var position = new float[4];
position[0] = textPosition.getXDirAdj();
@@ -196,6 +196,12 @@ public class TextPositionSequence implements CharSequence {
}
public float getTextHeightNoPadding() {
return textPositions.get(0).getHeightDir();
}
@JsonIgnore
@JsonAttribute(ignore = true)
public float getTextHeight() {
@@ -224,6 +230,9 @@ public class TextPositionSequence implements CharSequence {
@JsonAttribute(ignore = true)
public String getFont() {
if (textPositions.get(0).getFontName() == null) {
return "none";
}
return textPositions.get(0).getFontName().toLowerCase(Locale.ROOT).replaceAll(",bold", "").replaceAll(",italic", "");
}
@@ -232,6 +241,9 @@ public class TextPositionSequence implements CharSequence {
@JsonAttribute(ignore = true)
public String getFontStyle() {
if (textPositions.get(0).getFontName() == null) {
return "standard";
}
String lowercaseFontName = textPositions.get(0).getFontName().toLowerCase(Locale.ROOT);
if (lowercaseFontName.contains("bold") && lowercaseFontName.contains("italic")) {
@@ -243,7 +255,6 @@ public class TextPositionSequence implements CharSequence {
} else {
return "standard";
}
}
@@ -8,6 +8,7 @@ import java.util.Map;
import org.springframework.stereotype.Service;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.PageInfo;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.TableCells;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.TableServiceResponse;
@@ -24,24 +25,26 @@ public class CvTableParsingAdapter {
Map<Integer, List<TableCells>> tableCells = new HashMap<>();
tableServiceResponse.getData()
.forEach(tableData -> tableCells.computeIfAbsent(tableData.getPageInfo().getNumber(), tableCell -> new ArrayList<>())
.addAll(convertTableCells(tableData.getTableCells())));
.addAll(convertTableCells(tableData.getTableCells(), tableData.getPageInfo())));
return tableCells;
}
private Collection<TableCells> convertTableCells(List<TableCells> tableCells) {
private Collection<TableCells> convertTableCells(List<TableCells> tableCells, PageInfo pageInfo) {
List<TableCells> cvParsedTableCells = new ArrayList<>();
tableCells.forEach(t -> cvParsedTableCells.add(TableCells.builder()
.y0(t.getY0())
.x1(t.getX1())
.y1(t.getY1())
.x0(t.getX0())
.width(t.getWidth())
.height(t.getHeight())
.build()));
tableCells.stream()
.filter(cell -> cell.getWidth() < pageInfo.getWidth() * 0.98 && cell.getHeight() < pageInfo.getHeight() * 0.98)
.forEach(t -> cvParsedTableCells.add(TableCells.builder()
.y0(t.getY0())
.x1(t.getX1())
.y1(t.getY1())
.x0(t.getX0())
.width(t.getWidth())
.height(t.getHeight())
.build()));
return cvParsedTableCells;
}
@@ -12,9 +12,9 @@ import java.util.Map;
import org.springframework.stereotype.Service;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.TableCells;
import com.knecon.fforesight.service.layoutparser.processor.model.table.CleanRulings;
import com.knecon.fforesight.service.layoutparser.processor.model.table.Ruling;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.TableCells;
import com.knecon.fforesight.service.layoutparser.processor.utils.DoubleComparisons;
import lombok.RequiredArgsConstructor;
@@ -25,10 +25,13 @@ import lombok.extern.slf4j.Slf4j;
@RequiredArgsConstructor
public class RulingCleaningService {
public CleanRulings getCleanRulings(List<TableCells> tableCells, List<Ruling> rulings, float minCharWidth, float maxCharHeight) {
private static final float THRESHOLD = 6;
public CleanRulings getCleanRulings(List<TableCells> tableCells, List<Ruling> rulings) {
if (!rulings.isEmpty()) {
snapPoints(rulings, minCharWidth, maxCharHeight);
snapPoints(rulings);
}
List<Ruling> vrs = new ArrayList<>();
@@ -53,14 +56,11 @@ public class RulingCleaningService {
}
List<Ruling> horizontalRulingLines = collapseOrientedRulings(hrs);
return CleanRulings.builder()
.vertical(verticalRulingLines)
.horizontal(horizontalRulingLines)
.build();
return CleanRulings.builder().vertical(verticalRulingLines).horizontal(horizontalRulingLines).build();
}
public void snapPoints(List<? extends Line2D.Float> rulings, float xThreshold, float yThreshold) {
public void snapPoints(List<? extends Line2D.Float> rulings) {
// collect points and keep a Line -> p1,p2 map
Map<Line2D.Float, Point2D[]> linesToPoints = new HashMap<>();
@@ -81,7 +81,7 @@ public class RulingCleaningService {
for (Point2D p : points.subList(1, points.size() - 1)) {
List<Point2D> last = groupedPoints.get(groupedPoints.size() - 1);
if (Math.abs(p.getX() - last.get(0).getX()) < xThreshold) {
if (Math.abs(p.getX() - last.get(0).getX()) < THRESHOLD) {
groupedPoints.get(groupedPoints.size() - 1).add(p);
} else {
groupedPoints.add(new ArrayList<>(Collections.singletonList(p)));
@@ -108,7 +108,7 @@ public class RulingCleaningService {
for (Point2D p : points.subList(1, points.size() - 1)) {
List<Point2D> last = groupedPoints.get(groupedPoints.size() - 1);
if (Math.abs(p.getY() - last.get(0).getY()) < yThreshold) {
if (Math.abs(p.getY() - last.get(0).getY()) < THRESHOLD) {
groupedPoints.get(groupedPoints.size() - 1).add(p);
} else {
groupedPoints.add(new ArrayList<>(Collections.singletonList(p)));
@@ -1,146 +0,0 @@
package com.knecon.fforesight.service.layoutparser.processor.services;
import java.awt.geom.Rectangle2D;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.Objects;
import java.util.Set;
import java.util.function.BiConsumer;
import java.util.function.BinaryOperator;
import java.util.function.Function;
import java.util.function.Supplier;
import java.util.stream.Collector;
import java.util.stream.Stream;
import org.springframework.stereotype.Service;
import com.iqser.red.service.persistence.service.v1.api.shared.model.redactionlog.Point;
import com.iqser.red.service.persistence.service.v1.api.shared.model.redactionlog.section.CellRectangle;
import com.iqser.red.service.persistence.service.v1.api.shared.model.redactionlog.section.SectionGrid;
import com.iqser.red.service.persistence.service.v1.api.shared.model.redactionlog.section.SectionRectangle;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.NodeType;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Document;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Page;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.SemanticNode;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Table;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.TableCell;
import lombok.RequiredArgsConstructor;
@Service
@RequiredArgsConstructor
public class SectionGridCreatorService {
public SectionGrid createSectionGrid(Document document) {
Map<Integer, List<SectionRectangle>> sectionBBox = document.streamAllSubNodesOfType(NodeType.SECTION).map(SemanticNode::getBBox).collect(new SectionGridCollector());
Map<Integer, List<SectionRectangle>> paragraphBBox = document.streamAllSubNodesOfType(NodeType.PARAGRAPH).map(SemanticNode::getBBox).collect(new SectionGridCollector());
Map<Integer, List<SectionRectangle>> headlineBBox = document.streamAllSubNodesOfType(NodeType.HEADLINE).map(SemanticNode::getBBox).collect(new SectionGridCollector());
Map<Integer, List<SectionRectangle>> tableBBox = document.streamAllSubNodesOfType(NodeType.TABLE).map(node -> (Table) node).collect(new TableGridCollector());
var sectionGrid = new SectionGrid();
sectionGrid.setRectanglesPerPage(mergeMapsByConcatenatingLists(//
mergeMapsByConcatenatingLists(paragraphBBox, headlineBBox), //
mergeMapsByConcatenatingLists(sectionBBox, tableBBox)));
return sectionGrid;
}
private static abstract class GridCollector<T> implements Collector<T, Map<Integer, List<SectionRectangle>>, Map<Integer, List<SectionRectangle>>> {
@Override
public Supplier<Map<Integer, List<SectionRectangle>>> supplier() {
return HashMap::new;
}
@Override
public Function<Map<Integer, List<SectionRectangle>>, Map<Integer, List<SectionRectangle>>> finisher() {
return Function.identity();
}
@Override
public BinaryOperator<Map<Integer, List<SectionRectangle>>> combiner() {
return SectionGridCreatorService::mergeMapsByConcatenatingLists;
}
@Override
public Set<Characteristics> characteristics() {
return Set.of(Characteristics.IDENTITY_FINISH, Characteristics.CONCURRENT, Characteristics.UNORDERED);
}
}
private static class TableGridCollector extends GridCollector<Table> {
@Override
public BiConsumer<Map<Integer, List<SectionRectangle>>, Table> accumulator() {
return (map, table) -> table.getPages()
.forEach(page -> map.merge(page.getNumber(), List.of(toSectionRectangle(table, page, table.getPages().size())), SectionGridCreatorService::concatLists));
}
private static SectionRectangle toSectionRectangle(Table table, Page page, int numberOfParts) {
Rectangle2D rect = table.getBBox().get(page);
List<CellRectangle> tableCellRectangles = table.streamTableCells()
.map(TableCell::getBBox)
.map(map -> map.get(page))
.filter(Objects::nonNull)
.map(rectangle2D -> new CellRectangle(new Point((float) rectangle2D.getX(), (float) rectangle2D.getY()),
(float) rectangle2D.getWidth(),
(float) rectangle2D.getHeight()))
.toList();
return new SectionRectangle(new Point((float) rect.getX(), (float) rect.getY()),
(float) rect.getWidth(),
(float) rect.getHeight(),
1,
numberOfParts,
tableCellRectangles);
}
}
private static class SectionGridCollector extends GridCollector<Map<Page, Rectangle2D>> {
@Override
public BiConsumer<Map<Integer, List<SectionRectangle>>, Map<Page, Rectangle2D>> accumulator() {
return (mapToKeep, mapToMerge) -> mapToMerge.forEach((page, rectangle) -> mapToKeep.merge(page.getNumber(),
List.of(toSectionRectangle(rectangle, mapToMerge.values().size())),
SectionGridCreatorService::concatLists));
}
private static SectionRectangle toSectionRectangle(Rectangle2D rect, int numberOfParts) {
return new SectionRectangle(new Point((float) rect.getX(), (float) rect.getY()), (float) rect.getWidth(), (float) rect.getHeight(), 1, numberOfParts, null);
}
}
private static Map<Integer, List<SectionRectangle>> mergeMapsByConcatenatingLists(Map<Integer, List<SectionRectangle>> mapToKeep,
Map<Integer, List<SectionRectangle>> mapToMerge) {
mapToMerge.forEach((page, rectangle) -> mapToKeep.merge(page, rectangle, SectionGridCreatorService::concatLists));
return mapToKeep;
}
private static List<SectionRectangle> concatLists(List<SectionRectangle> l1, List<SectionRectangle> l2) {
return Stream.concat(l1.stream(), l2.stream()).toList();
}
}
@@ -12,7 +12,6 @@ import java.util.Set;
import org.springframework.stereotype.Service;
import com.knecon.fforesight.service.layoutparser.internal.api.queue.LayoutParsingType;
import com.knecon.fforesight.service.layoutparser.processor.model.AbstractPageBlock;
import com.knecon.fforesight.service.layoutparser.processor.model.ClassificationPage;
import com.knecon.fforesight.service.layoutparser.processor.model.table.Cell;
@@ -66,6 +65,17 @@ public class TableExtractionService {
};
public boolean contains(Cell cell, double x, double y, double w, double h) {
if (cell.isEmpty() || w <= 0 || h <= 0) {
return false;
}
double x0 = cell.getX();
double y0 = cell.getY();
return (x >= x0 - 2 && y >= y0 - 2 && (x + w) <= x0 + cell.getWidth() + 2 && (y + h) <= y0 + cell.getHeight() + 2);
}
/**
* Finds tables on a page and moves textblocks into cells of the found tables.
* Note: This algorithm uses Pdf Coordinate System where {0,0} rotated with the page rotation.
@@ -79,16 +89,17 @@ public class TableExtractionService {
* @param cleanRulings The lines used to build the table.
* @param page Page object that contains textblocks and statistics.
*/
public void extractTables(CleanRulings cleanRulings, ClassificationPage page, LayoutParsingType layoutParsingType) {
public void extractTables(CleanRulings cleanRulings, ClassificationPage page) {
List<Cell> cells = findCells(cleanRulings.getHorizontal(), cleanRulings.getVertical(), layoutParsingType);
List<Cell> cells = findCells(cleanRulings.getHorizontal(), cleanRulings.getVertical());
List<TextPageBlock> toBeRemoved = new ArrayList<>();
for (AbstractPageBlock abstractPageBlock : page.getTextBlocks()) {
TextPageBlock textBlock = (TextPageBlock) abstractPageBlock;
for (Cell cell : cells) {
if (cell.hasMinimumSize() && cell.intersects(textBlock.getPdfMinX(),
if (cell.hasMinimumSize() && contains(cell,
textBlock.getPdfMinX(),
textBlock.getPdfMinY(),
textBlock.getPdfMaxX() - textBlock.getPdfMinX(),
textBlock.getPdfMaxY() - textBlock.getPdfMinY())) {
@@ -102,7 +113,7 @@ public class TableExtractionService {
cells = new ArrayList<>(new HashSet<>(cells));
DoubleComparisons.sort(cells, Rectangle.ILL_DEFINED_ORDER);
List<Rectangle> spreadsheetAreas = findSpreadsheetsFromCells(cells).stream().filter(r -> r.getWidth() > 0f && r.getHeight() > 0f).toList();
List<Rectangle> spreadsheetAreas = findSpreadsheetsFromCells(cells);
List<TablePageBlock> tables = new ArrayList<>();
for (Rectangle area : spreadsheetAreas) {
@@ -135,16 +146,14 @@ public class TableExtractionService {
}
public List<Cell> findCells(List<Ruling> horizontalRulingLines, List<Ruling> verticalRulingLines, LayoutParsingType layoutParsingType) {
public List<Cell> findCells(List<Ruling> horizontalRulingLines, List<Ruling> verticalRulingLines) {
if (layoutParsingType.equals(LayoutParsingType.TAAS)) {
// TODO: breaks some tables, for example "1 Abamectin Prr.pdf" try to fix this upstream in RulingCleaningService
for (Ruling r : horizontalRulingLines) {
if (r.getX2() < r.getX1()) {
double a = r.getX2();
r.x2 = (float) r.getX1();
r.x1 = (float) a;
}
// Fix for 211.pdf
for (Ruling r : horizontalRulingLines) {
if (r.getX2() < r.getX1()) {
double a = r.getX2();
r.x2 = (float) r.getX1();
r.x1 = (float) a;
}
}
@@ -61,8 +61,8 @@ public class DocuMineBlockificationService {
boolean newLineAfterSplit = prev != null && word.getMinYDirAdj() != prev.getMinYDirAdj() && wasSplitted && splitX1 != word.getMinXDirAdj();
boolean isSplitByRuling = isSplitByRuling(minX, minY, maxX, maxY, word, horizontalRulingLines, verticalRulingLines);
boolean splitByDir = prev != null && !prev.getDir().equals(word.getDir());
boolean splitByOtherFontAndOtherY = prev != null && prev.getMaxYDirAdj() != word.getMaxYDirAdj() && (word.getFontStyle().contains("bold") && !prev.getFontStyle()
.contains("bold") || prev.getFontStyle().contains("bold") && !word.getFontStyle().contains("bold"));
boolean splitByOtherFontAndOtherY = prev != null && Math.abs(prev.getMaxYDirAdj() - word.getMaxYDirAdj()) > word.getTextHeight() * 0.2 && (word.getFontStyle()
.contains("bold") && !prev.getFontStyle().contains("bold") || prev.getFontStyle().contains("bold") && !word.getFontStyle().contains("bold"));
Matcher matcher = pattern.matcher(chunkWords.stream().collect(Collectors.joining(" ")).toString());
boolean startsOnSameX = Math.abs(minX - word.getMinXDirAdj()) < 5 && matcher.matches();
@@ -1,13 +1,8 @@
package com.knecon.fforesight.service.layoutparser.processor.services.blockification;
import java.util.ArrayList;
import java.util.Iterator;
import java.util.LinkedList;
import java.util.List;
import java.util.regex.Matcher;
import java.util.regex.Pattern;
import org.springframework.stereotype.Service;
// TODO: figure out, why this fails the build
// import static com.knecon.fforesight.service.layoutparser.processor.services.factory.SearchTextWithTextPositionFactory.HEIGHT_PADDING;
import com.knecon.fforesight.service.layoutparser.processor.model.AbstractPageBlock;
import com.knecon.fforesight.service.layoutparser.processor.model.ClassificationPage;
@@ -16,14 +11,25 @@ import com.knecon.fforesight.service.layoutparser.processor.model.table.Ruling;
import com.knecon.fforesight.service.layoutparser.processor.model.text.TextPageBlock;
import com.knecon.fforesight.service.layoutparser.processor.model.text.TextPositionSequence;
import com.knecon.fforesight.service.layoutparser.processor.utils.RulingTextDirAdjustUtil;
import org.springframework.stereotype.Service;
import java.util.*;
import java.util.regex.Matcher;
import java.util.regex.Pattern;
import java.util.stream.Stream;
@Service
@SuppressWarnings("all")
public class TaasBlockificationService {
private static final float THRESHOLD = 1f;
private static final float Y_GAP_SPLIT_HEIGHT_MODIFIER = 1.25f;
private static final float Y_GAP_SPLIT_HEIGHT_MODIFIER = 1.25f; // multiplied with text height
private static final float INTERSECTS_Y_THRESHOLD = 4;// 2 * HEIGHT_PADDING // This is exactly 2 times our position height padding. This is required to find boxes that are visually intersecting.
private static final int X_GAP_SPLIT_CONSTANT = 50;
public static final int X_ALIGNMENT_THRESHOLD = 1;
public static final int NEGATIVE_X_GAP_THRESHOLD = -5;
private Pattern listIdentifier = Pattern.compile("^(?:(?:[1-9]|1\\d|20|[ivxlc]|[a-z])\\s*(?:[.)]))|\\uF0B7", Pattern.CASE_INSENSITIVE);
/**
@@ -39,14 +45,28 @@ public class TaasBlockificationService {
public ClassificationPage blockify(List<TextPositionSequence> textPositions, List<Ruling> horizontalRulingLines, List<Ruling> verticalRulingLines) {
List<TextPageBlock> classificationTextBlocks = constructFineGranularTextPageBlocks(textPositions, horizontalRulingLines, verticalRulingLines);
classificationTextBlocks = mergeFineGranularTextPageBlocks(classificationTextBlocks);
classificationTextBlocks = mergeTextPageBlocksAligningX(classificationTextBlocks);
classificationTextBlocks = mergeIntersectingTextBlocksUntilConvergence(classificationTextBlocks);
return new ClassificationPage(new ArrayList<>(classificationTextBlocks.stream().map(classificationTextBlock -> (AbstractPageBlock) classificationTextBlock).toList()));
}
private List<TextPageBlock> mergeFineGranularTextPageBlocks(List<TextPageBlock> classificationTextBlocks) {
private List<TextPageBlock> mergeIntersectingTextBlocksUntilConvergence(List<TextPageBlock> classificationTextBlocks) {
int currentSize = classificationTextBlocks.size();
while (true) {
classificationTextBlocks = mergeTextPageBlocksAlmostIntersecting(classificationTextBlocks);
if (classificationTextBlocks.size() == currentSize) {
break;
}
currentSize = classificationTextBlocks.size();
}
return classificationTextBlocks;
}
private List<TextPageBlock> mergeTextPageBlocksAligningX(List<TextPageBlock> classificationTextBlocks) {
if (classificationTextBlocks.isEmpty()) {
return new ArrayList<>();
@@ -55,16 +75,29 @@ public class TaasBlockificationService {
List<TextPageBlock> currentTextBlocksToMerge = new LinkedList<>();
textBlocksToMerge.add(currentTextBlocksToMerge);
TextPageBlock previousTextBlock = null;
Float lastLineGap = null;
for (TextPageBlock currentTextBlock : classificationTextBlocks) {
if (previousTextBlock == null) {
currentTextBlocksToMerge.add(currentTextBlock);
previousTextBlock = currentTextBlock;
continue;
}
boolean alignsXRight = Math.abs(currentTextBlock.getPdfMaxX() - previousTextBlock.getPdfMaxX()) < 1;
boolean smallYGap = Math.abs(currentTextBlock.getPdfMaxY() - previousTextBlock.getPdfMinY()) < 5;
if (alignsXRight && smallYGap) {
Matcher listIdentifierPattern = listIdentifier.matcher(currentTextBlock.getText());
boolean isListIdentifier = listIdentifierPattern.find();
boolean yGap = Math.abs(currentTextBlock.getPdfMaxY() - previousTextBlock.getPdfMinY()) < previousTextBlock.getMostPopularWordHeight() * Y_GAP_SPLIT_HEIGHT_MODIFIER;
boolean sameFont = previousTextBlock.getMostPopularWordFont().equals(currentTextBlock.getMostPopularWordFont()) && previousTextBlock.getMostPopularWordFontSize() == currentTextBlock.getMostPopularWordFontSize();
// boolean yGap = previousTextBlock != null && currentTextBlock.getMinYDirAdj() - maxY > Math.min(word.getHeight(), prev.getHeight()) * Y_GAP_SPLIT_HEIGHT_MODIFIER;
boolean alignsXRight = Math.abs(currentTextBlock.getPdfMaxX() - previousTextBlock.getPdfMaxX()) < X_ALIGNMENT_THRESHOLD;
boolean alignsXLeft = Math.abs(currentTextBlock.getPdfMinX() - previousTextBlock.getPdfMinX()) < X_ALIGNMENT_THRESHOLD;
// boolean smallYGap = Math.abs(currentTextBlock.getPdfMaxY() - previousTextBlock.getPdfMinY()) < yGap;
if (yGap && sameFont && !isListIdentifier) {
currentTextBlocksToMerge.add(currentTextBlock);
} else {
currentTextBlocksToMerge = new LinkedList<>();
currentTextBlocksToMerge.add(currentTextBlock);
@@ -76,6 +109,23 @@ public class TaasBlockificationService {
}
private List<TextPageBlock> mergeTextPageBlocksAlmostIntersecting(List<TextPageBlock> textPageBlocks) {
Set<TextPageBlock> alreadyMerged = new HashSet<>();
List<List<TextPageBlock>> textBlocksToMerge = new LinkedList<>();
for (TextPageBlock textPageBlock : textPageBlocks) {
if (alreadyMerged.contains(textPageBlock)) {
continue;
}
alreadyMerged.add(textPageBlock);
textBlocksToMerge.add(Stream.concat(Stream.of(textPageBlock),
textPageBlocks.stream().filter(textPageBlock2 -> textPageBlock.almostIntersects(textPageBlock2, INTERSECTS_Y_THRESHOLD, 0) && !alreadyMerged.contains(textPageBlock2)).peek(alreadyMerged::add))
.toList());
}
return textBlocksToMerge.stream().map(TextPageBlock::merge).toList();
}
private void assignOrientations(List<TextPageBlock> classificationTextBlocks) {
Iterator<TextPageBlock> itty = classificationTextBlocks.iterator();
@@ -128,8 +178,8 @@ public class TaasBlockificationService {
private List<TextPageBlock> constructFineGranularTextPageBlocks(List<TextPositionSequence> textPositions,
List<Ruling> horizontalRulingLines,
List<Ruling> verticalRulingLines) {
List<Ruling> horizontalRulingLines,
List<Ruling> verticalRulingLines) {
int indexOnPage = 0;
List<TextPositionSequence> wordClusterToCombine = new ArrayList<>();
@@ -138,18 +188,18 @@ public class TaasBlockificationService {
float minX = 1000, maxX = 0, minY = 1000, maxY = 0;
TextPositionSequence prev = null;
// TODO: make static final constant
var listIdentitifier = Pattern.compile("\\b(?:[1-9]|1\\d|20|[ivxlc]|[a-z])\\s*(?:[.)])", Pattern.CASE_INSENSITIVE);
boolean wasSplitted = false;
Float splitX1 = null;
for (TextPositionSequence word : textPositions) {
Matcher listIdentifierPattern = listIdentitifier.matcher(word.toString());
Matcher listIdentifierPattern = listIdentifier.matcher(word.toString());
boolean yGap = prev != null && word.getMinYDirAdj() - maxY > Math.min(word.getHeight(), prev.getHeight()) * Y_GAP_SPLIT_HEIGHT_MODIFIER;
boolean sameLine = prev != null && equalsWithThreshold(prev.getMinYDirAdj(), word.getMinYDirAdj());
boolean positiveXGapInline = prev != null && maxX + X_GAP_SPLIT_CONSTANT < word.getMinXDirAdj() && sameLine;
boolean negativeXGap = prev != null && word.getMinXDirAdj() - minX < -5;
boolean negativeXGap = prev != null && word.getMinXDirAdj() - minX < NEGATIVE_X_GAP_THRESHOLD;
boolean startFromTop = prev != null && word.getMinYDirAdj() < prev.getMinYDirAdj() - prev.getTextHeight();
boolean newLineAfterSplit = prev != null && word.getMinYDirAdj() != prev.getMinYDirAdj() && wasSplitted && splitX1 != word.getMinXDirAdj();
boolean splitByRuling = isSplitByRuling(minX, minY, maxX, maxY, word, horizontalRulingLines, verticalRulingLines);
@@ -164,7 +214,7 @@ public class TaasBlockificationService {
Orientation prevOrientation = null;
if (!classificationTextBlocks.isEmpty()) {
prevOrientation = classificationTextBlocks.get(classificationTextBlocks.size() - 1).getOrientation();
prevOrientation = classificationTextBlocks.get(classificationTextBlocks.size() - X_ALIGNMENT_THRESHOLD).getOrientation();
}
TextPageBlock classificationTextBlock = TextPageBlock.fromTextPositionSequences(wordClusterToCombine);
@@ -5,7 +5,6 @@ import java.util.Locale;
import java.util.regex.Matcher;
import java.util.regex.Pattern;
import com.knecon.fforesight.service.layoutparser.processor.utils.MarkedContentUtils;
import org.springframework.stereotype.Service;
import com.knecon.fforesight.service.layoutparser.processor.model.AbstractPageBlock;
@@ -13,6 +12,8 @@ import com.knecon.fforesight.service.layoutparser.processor.model.Classification
import com.knecon.fforesight.service.layoutparser.processor.model.ClassificationPage;
import com.knecon.fforesight.service.layoutparser.processor.model.PageBlockType;
import com.knecon.fforesight.service.layoutparser.processor.model.text.TextPageBlock;
import com.knecon.fforesight.service.layoutparser.processor.utils.HeaderFooterDetection;
import com.knecon.fforesight.service.layoutparser.processor.utils.MarkedContentUtils;
import com.knecon.fforesight.service.layoutparser.processor.utils.PositionUtils;
import lombok.RequiredArgsConstructor;
@@ -23,7 +24,7 @@ import lombok.extern.slf4j.Slf4j;
@RequiredArgsConstructor
public class DocuMineClassificationService {
private static final Pattern pattern = Pattern.compile("^(\\d{1,2}\\.){1,3}\\d{1,2}\\.?\\s[0-9A-Za-z \\[\\]]{2,50}", Pattern.CASE_INSENSITIVE);
private static final Pattern pattern = Pattern.compile("^([1-9]\\d?\\.){1,3}\\d{1,2}\\.?\\s[0-9A-Za-z \\[\\]]{2,50}", Pattern.CASE_INSENSITIVE);
private static final Pattern pattern2 = Pattern.compile("\\p{L}{3,}", Pattern.CASE_INSENSITIVE);
private static final Pattern pattern3 = Pattern.compile("^(\\d{1,1}\\.){1,3}\\d{1,2}\\.?\\s[a-z]{1,2}\\/[a-z]{1,2}.*");
@@ -64,46 +65,65 @@ public class DocuMineClassificationService {
return;
}
if (MarkedContentUtils.intersects(textBlock, page.getMarkedContentBboxPerType(), MarkedContentUtils.HEADER)
|| PositionUtils.isOverBodyTextFrame(bodyTextFrame, textBlock, page.getRotation()) && (document.getFontSizeCounter()
.getMostPopular() == null || textBlock.getHighestFontSize() <= document.getFontSizeCounter().getMostPopular())
) {
|| (PositionUtils.isOverBodyTextFrame(bodyTextFrame,
textBlock,
page.getRotation()) && (document.getFontSizeCounter().getMostPopular()
== null
|| textBlock.getHighestFontSize()
<= document.getFontSizeCounter()
.getMostPopular()))
|| HeaderFooterDetection.isLikelyHeader(textBlock, document, page)) {
textBlock.setClassification(PageBlockType.HEADER);
} else if (MarkedContentUtils.intersects(textBlock, page.getMarkedContentBboxPerType(), MarkedContentUtils.FOOTER)
|| PositionUtils.isUnderBodyTextFrame(bodyTextFrame, textBlock, page.getRotation()) && (document.getFontSizeCounter()
.getMostPopular() == null || textBlock.getHighestFontSize() <= document.getFontSizeCounter().getMostPopular())
) {
|| (PositionUtils.isUnderBodyTextFrame(bodyTextFrame,
textBlock,
page.getRotation())
&& (document.getFontSizeCounter().getMostPopular()
== null
|| textBlock.getHighestFontSize()
<= document.getFontSizeCounter()
.getMostPopular()))
|| HeaderFooterDetection.isLikelyFooter(textBlock, document, page)) {
textBlock.setClassification(PageBlockType.FOOTER);
} else if (page.getPageNumber() == 1 && (PositionUtils.getHeightDifferenceBetweenChunkWordAndDocumentWord(textBlock,
document.getTextHeightCounter().getMostPopular()) > 2.5 && textBlock.getHighestFontSize() > document.getFontSizeCounter().getMostPopular() || page.getTextBlocks()
.size() == 1)) {
} else if (page.getPageNumber() == 1 && (PositionUtils.getHeightDifferenceBetweenChunkWordAndDocumentWord(textBlock, document.getTextHeightCounter().getMostPopular()) > 2.5
&& textBlock.getHighestFontSize() > document.getFontSizeCounter().getMostPopular() || page.getTextBlocks().size() == 1)) {
if (!Pattern.matches("[0-9]+", textBlock.toString())) {
textBlock.setClassification(PageBlockType.TITLE);
}
} else if (textBlock.getText().length() > 5 && (textBlock.getMostPopularWordHeight() > document.getTextHeightCounter()
.getMostPopular() || textBlock.getMostPopularWordFontSize() > document.getFontSizeCounter().getMostPopular()) && PositionUtils.getApproxLineCount(textBlock) < 5.9
&& (textBlock.getMostPopularWordStyle().contains("bold") && Character.isDigit(textBlock.toString().charAt(0)) && !matcher2.matches() && !textBlock.toString()
.contains(":") || textBlock.toString().equals(textBlock.toString().toUpperCase(Locale.ROOT)) && !matcher2.matches() && !textBlock.toString()
.contains(":") || textBlock.toString().startsWith("APPENDIX") || textBlock.toString().startsWith("FIGURE") || textBlock.toString()
.startsWith("TABLE")) && !textBlock.toString().endsWith(":") && matcher2.find()) {
} else if (textBlock.getText().length() > 5
&& (textBlock.getMostPopularWordHeight() > document.getTextHeightCounter().getMostPopular()
|| textBlock.getMostPopularWordFontSize() > document.getFontSizeCounter().getMostPopular())
&& PositionUtils.getApproxLineCount(textBlock) < 5.9
&& (textBlock.getMostPopularWordStyle().contains("bold") && Character.isDigit(textBlock.toString().charAt(0)) && matcher2.reset().find() && !textBlock.toString()
.contains(":")
|| textBlock.toString().equals(textBlock.toString().toUpperCase(Locale.ROOT)) && matcher2.reset().find() && !textBlock.toString().contains(":")
|| textBlock.toString().startsWith("APPENDIX")
|| textBlock.toString().startsWith("FIGURE")
|| textBlock.toString().startsWith("TABLE"))
&& !textBlock.toString().endsWith(":")
&& matcher2.reset().find()) {
textBlock.setClassification(PageBlockType.getHeadlineType(1));
document.setHeadlines(true);
} else if (matcher.find() && PositionUtils.getApproxLineCount(textBlock) < 2.9 && matcher2.find() && !matcher3.matches()) {
} else if (matcher.reset().find() && PositionUtils.getApproxLineCount(textBlock) < 2.9 && matcher2.reset().find() && !matcher3.reset().matches()) {
textBlock.setClassification(PageBlockType.getHeadlineType(2));
document.setHeadlines(true);
} else if (PositionUtils.isWithinBodyTextFrame(bodyTextFrame, textBlock) && textBlock.getMostPopularWordFontSize() == document.getFontSizeCounter()
.getMostPopular() && textBlock.getMostPopularWordStyle().equals("bold") && !document.getFontStyleCounter().getMostPopular().equals("bold")) {
} else if (PositionUtils.isWithinBodyTextFrame(bodyTextFrame, textBlock)
&& textBlock.getMostPopularWordFontSize() == document.getFontSizeCounter().getMostPopular()
&& textBlock.getMostPopularWordStyle().equals("bold")
&& !document.getFontStyleCounter().getMostPopular().equals("bold")) {
textBlock.setClassification(PageBlockType.PARAGRAPH_BOLD);
} else if (PositionUtils.isWithinBodyTextFrame(bodyTextFrame, textBlock) && textBlock.getMostPopularWordFont()
.equals(document.getFontCounter().getMostPopular()) && textBlock.getMostPopularWordStyle()
.equals(document.getFontStyleCounter().getMostPopular()) && textBlock.getMostPopularWordFontSize() == document.getFontSizeCounter().getMostPopular()) {
} else if (PositionUtils.isWithinBodyTextFrame(bodyTextFrame, textBlock)
&& textBlock.getMostPopularWordFont().equals(document.getFontCounter().getMostPopular())
&& textBlock.getMostPopularWordStyle().equals(document.getFontStyleCounter().getMostPopular())
&& textBlock.getMostPopularWordFontSize() == document.getFontSizeCounter().getMostPopular()) {
textBlock.setClassification(PageBlockType.PARAGRAPH);
} else if (PositionUtils.isWithinBodyTextFrame(bodyTextFrame, textBlock) && textBlock.getMostPopularWordFontSize() == document.getFontSizeCounter()
.getMostPopular() && textBlock.getMostPopularWordStyle().equals("italic") && !document.getFontStyleCounter()
.getMostPopular()
.equals("italic") && PositionUtils.getApproxLineCount(textBlock) < 2.9) {
} else if (PositionUtils.isWithinBodyTextFrame(bodyTextFrame, textBlock)
&& textBlock.getMostPopularWordFontSize() == document.getFontSizeCounter().getMostPopular()
&& textBlock.getMostPopularWordStyle().equals("italic")
&& !document.getFontStyleCounter().getMostPopular().equals("italic")
&& PositionUtils.getApproxLineCount(textBlock) < 2.9) {
textBlock.setClassification(PageBlockType.PARAGRAPH_ITALIC);
} else if (PositionUtils.isWithinBodyTextFrame(bodyTextFrame, textBlock)) {
textBlock.setClassification(PageBlockType.PARAGRAPH_UNKNOWN);
@@ -133,7 +133,7 @@ public class SearchTextWithTextPositionFactory {
private static void addTextPositionWithFontType(RedTextPosition currentTextPosition, String fontType, List<Integer> fontTypePositions, int stringIdx) {
if (currentTextPosition.getFontName().toLowerCase(Locale.ROOT).contains(fontType)) {
if (currentTextPosition.getFontName() != null && currentTextPosition.getFontName().toLowerCase(Locale.ROOT).contains(fontType)) {
fontTypePositions.add(stringIdx);
}
}
@@ -1,6 +1,7 @@
package com.knecon.fforesight.service.layoutparser.processor.services.mapper;
import java.awt.geom.Rectangle2D;
import java.util.Collections;
import java.util.HashMap;
import java.util.Locale;
import java.util.Map;
@@ -8,6 +9,7 @@ import java.util.Map;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.DocumentStructure;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Image;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.ImageType;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Page;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Table;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.TableCell;
@@ -1,18 +1,34 @@
package com.knecon.fforesight.service.layoutparser.processor.services.parsing;
import com.knecon.fforesight.service.layoutparser.processor.model.table.Ruling;
import com.knecon.fforesight.service.layoutparser.processor.model.text.RedTextPosition;
import com.knecon.fforesight.service.layoutparser.processor.model.text.TextPositionSequence;
import lombok.Getter;
import lombok.Setter;
import lombok.SneakyThrows;
import lombok.extern.slf4j.Slf4j;
import java.awt.color.CMMException;
import java.awt.geom.Point2D;
import java.io.IOException;
import java.util.ArrayList;
import java.util.List;
import org.apache.pdfbox.contentstream.operator.Operator;
import org.apache.pdfbox.contentstream.operator.OperatorName;
import org.apache.pdfbox.contentstream.operator.color.*;
import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingColor;
import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingColorN;
import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingColorSpace;
import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingDeviceCMYKColor;
import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingDeviceGrayColor;
import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingDeviceRGBColor;
import org.apache.pdfbox.contentstream.operator.color.SetStrokingColor;
import org.apache.pdfbox.contentstream.operator.color.SetStrokingColorN;
import org.apache.pdfbox.contentstream.operator.color.SetStrokingColorSpace;
import org.apache.pdfbox.contentstream.operator.color.SetStrokingDeviceCMYKColor;
import org.apache.pdfbox.contentstream.operator.color.SetStrokingDeviceGrayColor;
import org.apache.pdfbox.contentstream.operator.color.SetStrokingDeviceRGBColor;
import org.apache.pdfbox.contentstream.operator.markedcontent.BeginMarkedContentSequenceWithProperties;
import org.apache.pdfbox.contentstream.operator.markedcontent.EndMarkedContentSequence;
import org.apache.pdfbox.contentstream.operator.state.*;
import org.apache.pdfbox.contentstream.operator.state.SetFlatness;
import org.apache.pdfbox.contentstream.operator.state.SetLineCapStyle;
import org.apache.pdfbox.contentstream.operator.state.SetLineDashPattern;
import org.apache.pdfbox.contentstream.operator.state.SetLineJoinStyle;
import org.apache.pdfbox.contentstream.operator.state.SetLineMiterLimit;
import org.apache.pdfbox.contentstream.operator.state.SetLineWidth;
import org.apache.pdfbox.contentstream.operator.state.SetRenderingIntent;
import org.apache.pdfbox.contentstream.operator.text.SetFontAndSize;
import org.apache.pdfbox.cos.COSBase;
import org.apache.pdfbox.cos.COSNumber;
@@ -21,11 +37,14 @@ import org.apache.pdfbox.pdmodel.PDPage;
import org.apache.pdfbox.pdmodel.graphics.color.PDColor;
import org.apache.pdfbox.text.TextPosition;
import java.awt.color.CMMException;
import java.awt.geom.Point2D;
import java.io.IOException;
import java.util.ArrayList;
import java.util.List;
import com.knecon.fforesight.service.layoutparser.processor.model.table.Ruling;
import com.knecon.fforesight.service.layoutparser.processor.model.text.RedTextPosition;
import com.knecon.fforesight.service.layoutparser.processor.model.text.TextPositionSequence;
import lombok.Getter;
import lombok.Setter;
import lombok.SneakyThrows;
import lombok.extern.slf4j.Slf4j;
@Getter
@Slf4j
@@ -36,11 +55,6 @@ public class PDFLinesTextStripper extends PDFTextStripper {
private final List<Ruling> graphicsPath = new ArrayList<>();
@Setter
protected PDPage pdpage;
private int minCharWidth;
private int maxCharWidth;
private int minCharHeight;
private int maxCharHeight;
private float path_x;
private float path_y;
@@ -73,7 +87,6 @@ public class PDFLinesTextStripper extends PDFTextStripper {
this.addOperator(new SetFontAndSize(this));
this.addOperator(new SetLineWidth(this));
addOperator(new BeginMarkedContentSequenceWithProperties(this));
// addOperator(new BeginMarkedContentSequence(this));
addOperator(new EndMarkedContentSequence(this));
@@ -232,33 +245,15 @@ public class PDFLinesTextStripper extends PDFTextStripper {
.get(textPositionSequences.get(textPositionSequences.size() - 1).getTextPositions().size() - 1);
}
int charWidth = (int) textPositions.get(i).getWidthDirAdj();
if (charWidth < minCharWidth) {
minCharWidth = charWidth;
}
if (charWidth > maxCharWidth) {
maxCharWidth = charWidth;
}
int charHeight = (int) textPositions.get(i).getHeightDir();
if (charHeight < minCharHeight) {
minCharHeight = charHeight;
}
if (charWidth > maxCharHeight) {
maxCharHeight = charHeight;
}
if (i == 0 && (textPositions.get(i).getUnicode().equals(" ") || textPositions.get(i).getUnicode().equals("\u00A0") || textPositions.get(i).getUnicode().equals("\t"))) {
startIndex++;
continue;
}
// Strange but sometimes this is happening, for example: Metolachlor2.pdf
if (i > 0 && textPositions.get(i).getXDirAdj() < textPositions.get(i - 1).getXDirAdj()) {
if (checkIfCurrentPositionIsToTheRightOfPreviousPosition(i, textPositions)) {
List<TextPosition> sublist = textPositions.subList(startIndex, i);
if (!(sublist.isEmpty() || sublist.size() == 1 && (sublist.get(0).getUnicode().equals(" ") || sublist.get(0).getUnicode().equals("\u00A0") || sublist.get(0)
.getUnicode()
.equals("\t")))) {
if (checkIfSequenceContainsOnlyWhitespaces(sublist)) {
textPositionSequences.add(new TextPositionSequence(sublist, pageNumber, i == textPositions.size() - 1 && isParagraphStart));
}
startIndex = i;
@@ -266,9 +261,7 @@ public class PDFLinesTextStripper extends PDFTextStripper {
if (textPositions.get(i).getRotation() == 0 && i > 0 && textPositions.get(i).getX() > textPositions.get(i - 1).getEndX() + 1) {
List<TextPosition> sublist = textPositions.subList(startIndex, i);
if (!(sublist.isEmpty() || sublist.size() == 1 && (sublist.get(0).getUnicode().equals(" ") || sublist.get(0).getUnicode().equals("\u00A0") || sublist.get(0)
.getUnicode()
.equals("\t")))) {
if (checkIfSequenceContainsOnlyWhitespaces(sublist)) {
textPositionSequences.add(new TextPositionSequence(sublist, pageNumber, i == textPositions.size() - 1 && isParagraphStart));
}
startIndex = i;
@@ -278,13 +271,10 @@ public class PDFLinesTextStripper extends PDFTextStripper {
.getUnicode()
.equals("\t")) && i <= textPositions.size() - 2) {
List<TextPosition> sublist = textPositions.subList(startIndex, i);
if (!(sublist.isEmpty() || sublist.size() == 1 && (sublist.get(0).getUnicode().equals(" ") || sublist.get(0).getUnicode().equals("\u00A0") || sublist.get(0)
.getUnicode()
.equals("\t")))) {
if (checkIfSequenceContainsOnlyWhitespaces(sublist)) {
// Remove false sequence ends (whitespaces)
if (previous != null && sublist.get(0).getYDirAdj() == previous.getYDirAdj() && sublist.get(0)
.getXDirAdj() - (previous.getXDirAdj() + previous.getWidthDirAdj()) < 0.01) {
if (checkIfGapSizeBetweenCharactersSmallerThanMaximum(previous, sublist, 0.01f)) {
for (TextPosition t : sublist) {
textPositionSequences.get(textPositionSequences.size() - 1).add(t);
}
@@ -319,13 +309,29 @@ public class PDFLinesTextStripper extends PDFTextStripper {
}
public boolean checkIfCurrentPositionIsToTheRightOfPreviousPosition(int i, List<TextPosition> textPositions) {
return i > 0 && textPositions.get(i).getXDirAdj() < textPositions.get(i - 1).getXDirAdj();
}
public boolean checkIfSequenceContainsOnlyWhitespaces(List<TextPosition> sublist) {
return !(sublist.isEmpty() || sublist.size() == 1 && (sublist.get(0).getUnicode().equals(" ") || sublist.get(0).getUnicode().equals("\u00A0") || sublist.get(0)
.getUnicode()
.equals("\t")));
}
public boolean checkIfGapSizeBetweenCharactersSmallerThanMaximum(RedTextPosition previous, List<TextPosition> sublist, float maximumGapSize) {
return previous != null && sublist.get(0).getYDirAdj() == previous.getYDirAdj() && sublist.get(0)
.getXDirAdj() - (previous.getXDirAdj() + previous.getWidthDirAdj()) < maximumGapSize;
}
@Override
public String getText(PDDocument doc) throws IOException {
minCharWidth = Integer.MAX_VALUE;
maxCharWidth = 0;
minCharHeight = Integer.MAX_VALUE;
maxCharHeight = 0;
textPositionSequences.clear();
rulings.clear();
graphicsPath.clear();
@@ -1711,7 +1711,7 @@ public class PDFTextStripper extends LegacyPDFStreamEngine {
int numberOfStrings = line.size();
for (int i = 0; i < numberOfStrings; i++) {
WordWithTextPositions word = line.get(i);
word.getTextPositions().sort(Comparator.comparing(TextPosition::getX));
word.getTextPositions().sort(Comparator.comparing(TextPosition::getXDirAdj));
writeString(word.getText(), word.getTextPositions(), isParagraphEnd && i == numberOfStrings - 1);
if (i < numberOfStrings - 1) {
writeWordSeparator();
@@ -4,11 +4,9 @@ import java.awt.geom.AffineTransform;
import java.awt.geom.Rectangle2D;
import java.io.IOException;
import java.io.OutputStream;
import java.util.HashSet;
import java.util.Set;
import org.apache.pdfbox.cos.COSDictionary;
import org.apache.pdfbox.cos.COSName;
import org.apache.pdfbox.pdfwriter.compress.CompressParameters;
import org.apache.pdfbox.pdmodel.PDDocument;
import org.apache.pdfbox.pdmodel.PDDocumentCatalog;
import org.apache.pdfbox.pdmodel.PDPage;
@@ -40,7 +38,6 @@ import lombok.extern.slf4j.Slf4j;
@RequiredArgsConstructor
public class ViewerDocumentService {
private static final String LAYER_NAME = "Layout grid";
private static final int FONT_SIZE = 10;
public static final float LINE_WIDTH = 1f;
@@ -54,8 +51,7 @@ public class ViewerDocumentService {
LayoutGrid layoutGrid = layoutGridService.createLayoutGrid(document);
// PDDocument.save() is very slow, since it actually traverses the entire pdf and writes a new one.
// If we collect all COSDictionaries we changed and tell it explicitly to only add the changed ones by using saveIncremental it's very fast.
Set<COSDictionary> dictionariesToUpdate = new HashSet<>();
PDOptionalContentGroup layer = addLayerToDocument(pdDocument, dictionariesToUpdate, layerVisibilityDefaultValue);
PDOptionalContentGroup layer = addLayerToDocument(pdDocument, layerVisibilityDefaultValue);
PDFont font = new PDType1Font(Standard14Fonts.FontName.HELVETICA);
for (int pageNumber = 0; pageNumber < pdDocument.getNumberOfPages(); pageNumber++) {
@@ -68,7 +64,8 @@ public class ViewerDocumentService {
// e.g. not escaped matrix transformations.
escapePreviousContents(pdDocument, pdPage);
VisualizationsOnPage visualizationsOnPage = layoutGrid.getVisualizationsPerPages().get(pageNumber);
VisualizationsOnPage visualizationsOnPage = layoutGrid.getVisualizationsPerPages()
.get(pageNumber);
assert pageNumber == visualizationsOnPage.getPageNumber();
// We need to append to the content stream, otherwise the content could be overlapped by following content.
try (var contentStream = new PDPageContentStream(pdDocument, pdPage, PDPageContentStream.AppendMode.APPEND, true)) {
@@ -102,11 +99,11 @@ public class ViewerDocumentService {
contentStream.setFont(font, FONT_SIZE);
contentStream.beginText();
Matrix textMatrix = new Matrix((float) textDeRotationMatrix.getScaleX(),
(float) textDeRotationMatrix.getShearX(),
(float) textDeRotationMatrix.getShearY(),
(float) textDeRotationMatrix.getScaleY(),
(float) placedText.lineStart().getX(),
(float) placedText.lineStart().getY());
(float) textDeRotationMatrix.getShearX(),
(float) textDeRotationMatrix.getShearY(),
(float) textDeRotationMatrix.getScaleY(),
(float) placedText.lineStart().getX(),
(float) placedText.lineStart().getY());
textMatrix.translate(-((font.getStringWidth(placedText.text()) / 1000) * FONT_SIZE + (2 * LINE_WIDTH) + 4), -FONT_SIZE);
contentStream.setTextMatrix(textMatrix);
contentStream.showText(placedText.text());
@@ -115,12 +112,9 @@ public class ViewerDocumentService {
contentStream.restoreGraphicsState();
contentStream.endMarkedContent();
}
dictionariesToUpdate.add(pdPage.getCOSObject());
dictionariesToUpdate.add(pdPage.getResources().getCOSObject());
}
dictionariesToUpdate.add(pdDocument.getDocumentInformation().getCOSObject());
// dictionariesToUpdate.add(pdDocument.getDocument().getTrailer());
pdDocument.saveIncremental(outputStream, dictionariesToUpdate);
pdDocument.save(outputStream, CompressParameters.NO_COMPRESSION);
}
@@ -145,7 +139,7 @@ public class ViewerDocumentService {
}
private static PDOptionalContentGroup addLayerToDocument(PDDocument pdDocument, Set<COSDictionary> dictionariesToUpdate, boolean layerVisibilityDefaultValue) {
private static PDOptionalContentGroup addLayerToDocument(PDDocument pdDocument, boolean layerVisibilityDefaultValue) {
PDDocumentCatalog catalog = pdDocument.getDocumentCatalog();
PDOptionalContentProperties ocprops = catalog.getOCProperties();
@@ -161,7 +155,6 @@ public class ViewerDocumentService {
ocprops.addGroup(layer);
}
ocprops.setGroupEnabled(layer, layerVisibilityDefaultValue);
dictionariesToUpdate.add(catalog.getCOSObject());
return layer;
}
@@ -0,0 +1,223 @@
package com.knecon.fforesight.service.layoutparser.processor.utils;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.stream.Collectors;
import com.knecon.fforesight.service.layoutparser.processor.model.AbstractPageBlock;
import com.knecon.fforesight.service.layoutparser.processor.model.ClassificationDocument;
import com.knecon.fforesight.service.layoutparser.processor.model.ClassificationPage;
import com.knecon.fforesight.service.layoutparser.processor.model.text.TextPageBlock;
import lombok.experimental.UtilityClass;
@UtilityClass
public class HeaderFooterDetection {
private final Map<Integer, ClassificationPage> pagesCache = new HashMap<>();
private static final double THRESHOLD = 0.5;
// Weight will go from 1.0 to 0.5 because the first element is the most likely to be the header on the page.
private static final double[] headerWeights = {1.0, 0.75, 0.5};
// Weight will go from 0.5 to 1.0 because the last element is the most likely to be the footer on the page.
private static final double[] footerWeights = {0.5, 0.75, 1.0};
public boolean isLikelyFooter(TextPageBlock textPageBlock, ClassificationDocument document, ClassificationPage classificationPage) {
int numberOfPages = document.getPages().size();
if (numberOfPages < 3) {
// If the document has 1 or 2 pages this may lead to more false positives than actual findings.
return false;
}
int window = Math.min(numberOfPages, 8);
List<ClassificationPage> nearestPages = findNearestPages(classificationPage, document.getPages(), window);
List<List<AbstractPageBlock>> footerCandidates = getFooterCandidates(nearestPages);
return detectHeadersOrFootersByPageAssociation(textPageBlock.getText(), footerCandidates, window, footerWeights);
}
public boolean isLikelyHeader(TextPageBlock textPageBlock, ClassificationDocument document, ClassificationPage classificationPage) {
int numberOfPages = document.getPages().size();
if (numberOfPages < 3) {
// If the document has 1 or 2 pages this may lead to more false positives than actual findings.
return false;
}
int window = Math.min(numberOfPages, 8);
List<ClassificationPage> nearestPages = findNearestPages(classificationPage, document.getPages(), window);
List<List<AbstractPageBlock>> headerCandidates = getHeaderCandidates(nearestPages);
return detectHeadersOrFootersByPageAssociation(textPageBlock.getText(), headerCandidates, window, headerWeights);
}
private boolean detectHeadersOrFootersByPageAssociation(String testString, List<List<AbstractPageBlock>> candidates, int window, double[] weights) {
double highestScore = 0.0;
for (int i = 0; i < candidates.size(); i++) {
List<List<String>> candidateStrings = new ArrayList<>();
for (int k = Math.max(i - window, 0); k < Math.min(i + window, candidates.size()); k++) {
candidateStrings.add(candidates.get(k)
.stream()
.map(AbstractPageBlock::getText)
.collect(Collectors.toList()));
}
int maxLen = candidateStrings.stream()
.mapToInt(List::size)
.max()
.orElse(0);
for (List<String> sublist : candidateStrings) {
while (sublist.size() < maxLen) {
sublist.add(0, "");
}
}
// Compare the testString against each candidate in the window
for (int j = 0; j < maxLen; j++) {
double score = 0.0;
int finalJ = j;
List<String> paddedCandidateStrings = candidateStrings.stream()
.map(sublist -> sublist.size() > finalJ ? sublist.get(finalJ) : "")
.toList();
for (String paddedString : paddedCandidateStrings) {
if ((testString.length() >= 5 && paddedString.length() >= 5) && (testString.length() > 2 * paddedString.length()
|| paddedString.length() > 2 * testString.length())) {
// If both strings are at least 5 characters long and one string is more than twice as long as the other,
// skip the distance calculation as it's time-consuming, and we can assume they are not similar enough
continue;
}
int distance = calculateHammingDistanceWithPreprocessing(testString, paddedString);
double normalizedScore = 1 - (double) distance / Math.max(testString.length(), paddedString.length());
score += normalizedScore * (j < weights.length ? weights[j] : 1);
}
score /= paddedCandidateStrings.size();
highestScore = Math.max(highestScore, score);
// Early stop
if (highestScore > THRESHOLD) {
return true;
}
}
}
return false;
}
/**
* Find the nearest n pages for a given page.
* For example: nearest 8 pages for page 4 are: 1, 2, 3, 5, 6, 7, 8, 9.
*
* @param currentPage Current page to find the nearest ones.
* @param allPages All pages in the document.
* @param numNeighbors Number of neighbouring pages to find.
* @return The nearest pages.
*/
private List<ClassificationPage> findNearestPages(ClassificationPage currentPage, List<ClassificationPage> allPages, int numNeighbors) {
int totalPages = allPages.size();
List<ClassificationPage> nearestPages = new ArrayList<>();
int currentPageIndex = currentPage.getPageNumber() - 1;
int halfWin = numNeighbors / 2;
int start = Math.max(0, currentPageIndex - halfWin);
int end = Math.min(totalPages - 1, currentPageIndex + halfWin);
for (int i = start; i <= end; i++) {
if (i != currentPageIndex) {
nearestPages.add(pagesCache.computeIfAbsent(i, allPages::get));
}
}
pagesCache.keySet().removeIf(key -> key < start || key > end);
return nearestPages;
}
// Get the last 3 TextBlocks on the page as they are likely to be a footer
private List<List<AbstractPageBlock>> getFooterCandidates(List<ClassificationPage> pages) {
List<List<AbstractPageBlock>> footerCandidates = new ArrayList<>();
for (ClassificationPage page : pages) {
List<AbstractPageBlock> textBlocks = page.getTextBlocks();
List<TextPageBlock> textPageBlocks = textBlocks.stream()
.filter(textBlock -> textBlock instanceof TextPageBlock)
.map(textBlock -> (TextPageBlock) textBlock)
.toList();
int blockCount = textPageBlocks.size();
if (blockCount > 0) {
int start = Math.max(0, blockCount - 3);
footerCandidates.add(new ArrayList<>(textPageBlocks.subList(start, blockCount)));
}
}
return footerCandidates;
}
// Get the first 3 TextBlocks on the page as they are likely to be a header
private List<List<AbstractPageBlock>> getHeaderCandidates(List<ClassificationPage> pages) {
List<List<AbstractPageBlock>> headerCandidates = new ArrayList<>();
for (ClassificationPage page : pages) {
List<AbstractPageBlock> textBlocks = page.getTextBlocks();
List<TextPageBlock> textPageBlocks = textBlocks.stream()
.filter(textBlock -> textBlock instanceof TextPageBlock)
.map(textBlock -> (TextPageBlock) textBlock)
.toList();
int count = Math.min(3, textPageBlocks.size());
headerCandidates.add(new ArrayList<>(textPageBlocks.subList(0, count)));
}
return headerCandidates;
}
/**
* Calculate the Hamming distance between two strings after preprocessing to make them the same length
* and replacing all digits with a special character '@' since they are a common occurrence in headers/footers.
*
* @param firstCandidate First string
* @param secondCandidate Second string
* @return The Hamming distance between the two preprocessed strings.
*/
private int calculateHammingDistanceWithPreprocessing(String firstCandidate, String secondCandidate) {
int maxLength = Math.max(firstCandidate.length(), secondCandidate.length());
String cleanFirstCandidate = padString(firstCandidate, maxLength, '\0').replaceAll("\\d", "@");
String cleanSecondCandidate = padString(secondCandidate, maxLength, '\0').replaceAll("\\d", "@");
int distance = 0;
for (int i = 0; i < maxLength; i++) {
if (cleanFirstCandidate.charAt(i) != cleanSecondCandidate.charAt(i)) {
distance++;
}
}
return distance;
}
private String padString(String input, int length, char padChar) {
if (input.length() >= length) {
return input;
}
StringBuilder sb = new StringBuilder(input);
while (sb.length() < length) {
sb.append(padChar);
}
return sb.toString();
}
}
@@ -9,6 +9,7 @@ import org.apache.pdfbox.text.TextPosition;
import java.awt.geom.Rectangle2D;
import java.util.Collection;
import java.util.Collections;
import java.util.List;
import java.util.Map;
import java.util.stream.Collectors;
@@ -22,7 +23,7 @@ public class MarkedContentUtils {
public List<Rectangle2D> getMarkedContentBboxPerLine(List<PDMarkedContent> markedContents, String subtype) {
if (markedContents == null) {
return null;
return Collections.emptyList();
}
var markedContentByYPosition = markedContents.stream()
@@ -37,7 +38,7 @@ public class MarkedContentUtils {
.collect(Collectors.groupingBy(TextPosition::getY));
if (markedContentByYPosition.isEmpty()) {
return null;
return Collections.emptyList();
}
return markedContentByYPosition.values().stream()
@@ -19,9 +19,10 @@ public final class PositionUtils {
double threshold = textBlock.getMostPopularWordHeight() * 3;
if (textBlock.getPdfMinX() + threshold > btf.getTopLeft().getX() && textBlock.getPdfMaxX() - threshold < btf.getTopLeft()
.getX() + btf.getWidth() && textBlock.getPdfMinY() + threshold > btf.getTopLeft().getY() && textBlock.getPdfMaxY() - threshold < btf.getTopLeft()
.getY() + btf.getHeight()) {
if (textBlock.getPdfMinX() + threshold > btf.getTopLeft().getX()
&& textBlock.getPdfMaxX() - threshold < btf.getTopLeft().getX() + btf.getWidth()
&& textBlock.getPdfMinY() + threshold > btf.getTopLeft().getY()
&& textBlock.getPdfMaxY() - threshold < btf.getTopLeft().getY() + btf.getHeight()) {
return true;
} else {
return false;
@@ -28,15 +28,13 @@ import com.knecon.fforesight.service.layoutparser.processor.model.text.TextPosit
*
* @author Ben Litchfield
*/
public class TextPositionSequenceComparator implements Comparator<TextPositionSequence>
{
public class TextPositionSequenceComparator implements Comparator<TextPositionSequence> {
@Override
public int compare(TextPositionSequence pos1, TextPositionSequence pos2)
{
public int compare(TextPositionSequence pos1, TextPositionSequence pos2) {
// only compare text that is in the same direction
int cmp1 = Float.compare(pos1.getDir().getDegrees(), pos2.getDir().getDegrees());
if (cmp1 != 0)
{
if (cmp1 != 0) {
return cmp1;
}
@@ -48,25 +46,19 @@ public class TextPositionSequenceComparator implements Comparator<TextPositionSe
float pos2YBottom = pos2.getMaxYDirAdj();
// note that the coordinates have been adjusted so 0,0 is in upper left
float pos1YTop = pos1YBottom - pos1.getTextHeight();
float pos2YTop = pos2YBottom - pos2.getTextHeight();
float pos1YTop = pos1YBottom - pos1.getTextHeightNoPadding();
float pos2YTop = pos2YBottom - pos2.getTextHeightNoPadding();
float yDifference = Math.abs(pos1YBottom - pos2YBottom);
// we will do a simple tolerance comparison
if (yDifference < .1 ||
pos2YBottom >= pos1YTop && pos2YBottom <= pos1YBottom ||
pos1YBottom >= pos2YTop && pos1YBottom <= pos2YBottom)
{
if (yDifference < .1 || pos2YBottom >= pos1YTop && pos2YBottom <= pos1YBottom || pos1YBottom >= pos2YTop && pos1YBottom <= pos2YBottom) {
return Float.compare(x1, x2);
}
else if (pos1YBottom < pos2YBottom)
{
} else if (pos1YBottom < pos2YBottom) {
return -1;
}
else
{
} else {
return 1;
}
}
}
@@ -19,8 +19,8 @@ dependencies {
implementation(project(":layoutparser-service-processor"))
implementation(project(":layoutparser-service-internal-api"))
implementation("com.iqser.red.commons:storage-commons:2.40.0")
implementation("com.knecon.fforesight:tenant-commons:0.10.0")
implementation("com.iqser.red.commons:storage-commons:2.45.0")
implementation("com.knecon.fforesight:tenant-commons:0.14.0")
implementation("org.springframework.boot:spring-boot-starter-actuator:3.1.3")
implementation("com.amazonaws:aws-java-sdk-s3:1.12.536")
implementation("org.springframework.boot:spring-boot-starter-amqp:3.1.3")
@@ -47,7 +47,7 @@ public class DocumentGraphVisualizationTest extends BuildDocumentTest {
@Disabled
public void visualizeCraftedDocument() {
String filename = "files/crafted document.pdf";
String filename = "files/1 Abamectin_prr.pdf";
visualizePdf(filename);
}
@@ -53,7 +53,7 @@ public class ExtractMarkedContentTest {
@SneakyThrows
public void testExtractTestWPhromma() throws IOException {
System.out.printf("\n\n===\n%s\n===\n", "testWPhromma.pdf");
PDDocument document = Loader.loadPDF(new ClassPathResource("files/bdr/Drucksache_19_9865.pdf").getFile());
try (PDDocument document = Loader.loadPDF(new ClassPathResource("files/bdr/Drucksache_19_9865.pdf").getFile())) {
Map<PDPage, Map<Integer, PDMarkedContent>> markedContents = new HashMap<>();
@@ -70,6 +70,8 @@ public class ExtractMarkedContentTest {
PDStructureNode root = document.getDocumentCatalog().getStructureTreeRoot();
showStructure(root, markedContents);
document.close();
}
}
/**
@@ -87,7 +89,8 @@ public class ExtractMarkedContentTest {
@Test
public void testExtractResMultipage() throws IOException {
System.out.printf("\n\n===\n%s\n===\n", "res_multipage.pdf");
PDDocument document = Loader.loadPDF(new ClassPathResource("files/bdr/Drucksache_19_9865.pdf").getFile());
try(PDDocument document = Loader.loadPDF(new ClassPathResource("files/bdr/Drucksache_19_9865.pdf").getFile())) {
Map<PDPage, Map<Integer, PDMarkedContent>> markedContents = new HashMap<>();
@@ -104,6 +107,8 @@ public class ExtractMarkedContentTest {
PDStructureNode root = document.getDocumentCatalog().getStructureTreeRoot();
showStructure(root, markedContents);
document.close();
}
}
/**
@@ -121,7 +126,7 @@ public class ExtractMarkedContentTest {
@Test
public void testExtractDailyReport() throws IOException {
System.out.printf("\n\n===\n%s\n===\n", "Daily Report.pdf");
PDDocument document = Loader.loadPDF(new ClassPathResource("files/bdr/Drucksache_19_9865.pdf").getFile());
try (PDDocument document = Loader.loadPDF(new ClassPathResource("files/bdr/Drucksache_19_9865.pdf").getFile())) {
Map<PDPage, Map<Integer, PDMarkedContent>> markedContents = new HashMap<>();
@@ -138,7 +143,9 @@ public class ExtractMarkedContentTest {
PDStructureNode root = document.getDocumentCatalog().getStructureTreeRoot();
showStructure(root, markedContents);
document.close();
}
}
/**
* @see #testExtractTestWPhromma()
@@ -2,14 +2,31 @@ package com.knecon.fforesight.service.layoutparser.server.graph;
import java.io.FileOutputStream;
import java.nio.file.Path;
import java.util.List;
import org.apache.pdfbox.Loader;
import org.apache.pdfbox.pdmodel.PDDocument;
import org.junit.jupiter.api.Disabled;
import org.junit.jupiter.api.Test;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.core.io.ClassPathResource;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.DocumentData;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.DocumentStructure;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.NodeType;
import com.knecon.fforesight.service.layoutparser.internal.api.queue.LayoutParsingType;
import com.knecon.fforesight.service.layoutparser.processor.model.ClassificationDocument;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Document;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Table;
import com.knecon.fforesight.service.layoutparser.processor.model.table.Cell;
import com.knecon.fforesight.service.layoutparser.processor.model.table.TablePageBlock;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.image.ImageServiceResponse;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.TableServiceResponse;
import com.knecon.fforesight.service.layoutparser.processor.services.SectionsBuilderService;
import com.knecon.fforesight.service.layoutparser.processor.services.classification.RedactManagerClassificationService;
import com.knecon.fforesight.service.layoutparser.processor.services.factory.DocumentGraphFactory;
import com.knecon.fforesight.service.layoutparser.processor.services.mapper.DocumentDataMapper;
import com.knecon.fforesight.service.layoutparser.processor.services.mapper.PropertiesMapper;
import com.knecon.fforesight.service.layoutparser.processor.services.visualization.LayoutGridService;
import com.knecon.fforesight.service.layoutparser.processor.services.visualization.ViewerDocumentService;
import com.knecon.fforesight.service.layoutparser.server.utils.BuildDocumentTest;
@@ -18,19 +35,38 @@ import lombok.SneakyThrows;
public class ViewerDocumentTest extends BuildDocumentTest {
@Autowired
private SectionsBuilderService sectionsBuilderService;
@Autowired
private RedactManagerClassificationService redactManagerClassificationService;
@Test
@Disabled
@SneakyThrows
public void testViewerDocument() {
String fileName = "files/bdr/notMergedParagraphs.pdf";
String tmpFileName = "/tmp/" + Path.of(fileName).getFileName() + "_VIEWER.pdf";
LayoutGridService layoutGridService = new LayoutGridService();
ViewerDocumentService viewerDocumentService = new ViewerDocumentService(layoutGridService);
String fileName = "files/marked_content/Header-Header.pdf";
Document document = buildGraph(fileName, LayoutParsingType.REDACT_MANAGER);
String tmpFileName = "/tmp/" + Path.of(fileName).getFileName() + "_VIEWER.pdf";
Document document = buildGraph(fileName, LayoutParsingType.TAAS);
try (var pdDocument = Loader.loadPDF(new ClassPathResource(fileName).getFile()); var out = new FileOutputStream(tmpFileName)) {
viewerDocumentService.createViewerDocument(pdDocument, document, out, true);
}
}
public ClassificationDocument buildClassificationDocument(PDDocument originDocument) {
ClassificationDocument classificationDocument = layoutParsingPipeline.parseLayout(LayoutParsingType.REDACT_MANAGER,
originDocument,
new ImageServiceResponse(),
new TableServiceResponse());
redactManagerClassificationService.classifyDocument(classificationDocument);
sectionsBuilderService.buildSections(classificationDocument);
return classificationDocument;
}
}
@@ -27,14 +27,14 @@ public class TextPositionSequenceTest {
+ " \"pageWidth\": 600\n" //
+ "}";
private final ObjectSerializer objectSerializer = new ObjectSerializer(new ObjectMapper(), new StorageProperties());
private final ObjectSerializer objectSerializer = new ObjectSerializer(new ObjectMapper());
@Test
@SneakyThrows
public void testDeserializationWithJackson() {
TextPositionSequence textPositionSequence = objectSerializer.deserializeWithJackson(new ByteArrayInputStream(TEXT_POSITION_SEQUENCE_AS_JSON.getBytes(StandardCharsets.UTF_8)),
TextPositionSequence textPositionSequence = objectSerializer.deserialize(new ByteArrayInputStream(TEXT_POSITION_SEQUENCE_AS_JSON.getBytes(StandardCharsets.UTF_8)),
TextPositionSequence.class);
assertPropertiesAfterJsonDeserialization(textPositionSequence);
@@ -1,5 +1,27 @@
package com.knecon.fforesight.service.layoutparser.server.segmentation;
import static org.assertj.core.api.Assertions.assertThat;
import java.awt.geom.Rectangle2D;
import java.io.FileOutputStream;
import java.io.IOException;
import java.nio.file.Path;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.Collections;
import java.util.HashMap;
import java.util.List;
import java.util.Locale;
import java.util.Map;
import java.util.stream.Collectors;
import org.apache.pdfbox.Loader;
import org.apache.pdfbox.pdmodel.PDDocument;
import org.junit.jupiter.api.Disabled;
import org.junit.jupiter.api.Test;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.core.io.ClassPathResource;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.knecon.fforesight.service.layoutparser.internal.api.queue.LayoutParsingType;
import com.knecon.fforesight.service.layoutparser.processor.LayoutParsingPipeline;
@@ -15,19 +37,8 @@ import com.knecon.fforesight.service.layoutparser.processor.python_api.model.tab
import com.knecon.fforesight.service.layoutparser.processor.services.SectionsBuilderService;
import com.knecon.fforesight.service.layoutparser.processor.services.classification.RedactManagerClassificationService;
import com.knecon.fforesight.service.layoutparser.server.utils.AbstractTest;
import lombok.SneakyThrows;
import org.apache.pdfbox.Loader;
import org.apache.pdfbox.pdmodel.PDDocument;
import org.junit.jupiter.api.Test;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.core.io.ClassPathResource;
import java.awt.geom.Rectangle2D;
import java.io.IOException;
import java.util.*;
import java.util.stream.Collectors;
import static org.assertj.core.api.Assertions.assertThat;
public class PdfSegmentationServiceTest extends AbstractTest {
@@ -50,12 +61,13 @@ public class PdfSegmentationServiceTest extends AbstractTest {
private SectionsBuilderService sectionsBuilderService;
public ClassificationDocument buildClassificationDocument(PDDocument originDocument) {
@SneakyThrows
public ClassificationDocument buildClassificationDocument(PDDocument originDocument, TableServiceResponse tableServiceResponse) {
ClassificationDocument classificationDocument = layoutParsingPipeline.parseLayout(LayoutParsingType.DOCUMINE,
ClassificationDocument classificationDocument = layoutParsingPipeline.parseLayout(LayoutParsingType.REDACT_MANAGER,
originDocument,
new ImageServiceResponse(),
new TableServiceResponse());
tableServiceResponse);
redactManagerClassificationService.classifyDocument(classificationDocument);
@@ -65,6 +77,58 @@ public class PdfSegmentationServiceTest extends AbstractTest {
}
@SneakyThrows
public ClassificationDocument buildClassificationDocument(PDDocument originDocument) {
return buildClassificationDocument(originDocument, new TableServiceResponse());
}
@Test
public void tablesToHtmlDebugger() throws IOException {
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/A20622A izRMS (CZ) fRR Part B9_Page185.pdf");
ClassificationDocument document = buildClassificationDocument(Loader.loadPDF(pdfFileResource.getFile()));
toHtml(document, "/tmp/A20622A izRMS (CZ) fRR Part B9_Page185.html");
}
@Test
public void tablesToHtmlDebuggerWithCVResponse() throws IOException {
ClassPathResource pdfFileResource = new ClassPathResource("files/cv_tables/ScanRotationBorder.pdf");
ClassPathResource cvTablesResource = new ClassPathResource("files/cv_tables/ScanRotationBorder.TABLES.json");
var tableServiceResponse = objectMapper.readValue(cvTablesResource.getInputStream(), TableServiceResponse.class);
ClassificationDocument document = buildClassificationDocument(Loader.loadPDF(pdfFileResource.getFile()), tableServiceResponse);
toHtml(document, "/tmp/ScanRotationBorder.html");
}
@Test
public void testScanRotationBorderIsIgnored() throws IOException {
ClassPathResource pdfFileResource = new ClassPathResource("files/cv_tables/ScanRotationBorder.pdf");
ClassPathResource cvTablesResource = new ClassPathResource("files/cv_tables/ScanRotationBorder.TABLES.json");
var tableServiceResponse = objectMapper.readValue(cvTablesResource.getInputStream(), TableServiceResponse.class);
ClassificationDocument document = buildClassificationDocument(Loader.loadPDF(pdfFileResource.getFile()), tableServiceResponse);
assertThat(document.getSections().stream().flatMap(paragraph -> paragraph.getTables().stream()).collect(Collectors.toList())).isNotEmpty();
var tables = document.getSections().stream().flatMap(paragraph -> paragraph.getTables().stream()).toList();
// Quality of the table parsing is not good, because the file is rotated at scanning.
// We only asset that the table border is not the page border.
tables.forEach(table -> {
assertThat(table.getMinX()).isGreaterThan(75);
assertThat(table.getMaxX()).isLessThan(512);
});
}
@Test
@SneakyThrows
public void testMapping() {
@@ -155,7 +219,7 @@ public class PdfSegmentationServiceTest extends AbstractTest {
}
@Test
@Test // Non-sense test
public void testDoc56Page170() throws IOException {
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/56 Fludioxonil_RAR_12_Volume_3CA_B-7_2018-02-21_Page170.pdf");
@@ -166,8 +230,25 @@ public class PdfSegmentationServiceTest extends AbstractTest {
validateTable(document, 0, 1, 1, 0, 0);
validateTable(document, 1, 2, 2, 0, 0);
validateTable(document, 2, 7, 20, 0, 140);
validateTable(document, 3, 8, 31, 0, 170);
validateTable(document, 2, 6, 20, 0, 0);
validateTable(document, 3, 7, 31, 0, 0);
}
@Test
public void testDoc211() throws IOException {
ClassPathResource pdfFileResource = new ClassPathResource("files/211.pdf");
ClassificationDocument document = buildClassificationDocument(Loader.loadPDF(pdfFileResource.getFile()));
validateTableSize(document, 4);
validateTable(document, 0, 5, 4, 0, 0);
validateTable(document, 1, 5, 15, 14, 0);
validateTable(document, 2, 5, 14, 11, 0);
validateTable(document, 3, 5, 3, 0, 0);
}
@@ -181,7 +262,7 @@ public class PdfSegmentationServiceTest extends AbstractTest {
validateTableSize(document, 1);
validateTable(document, 0, 8, 8, 0, 2);
validateTable(document, 0, 8, 8, 0, 0);
List<List<String>> values = Arrays.asList(Arrays.asList("Annex point Reference within DAR/RAR",
"Author, date",
@@ -191,18 +272,18 @@ public class PdfSegmentationServiceTest extends AbstractTest {
"Method meets analytical validation criteria",
"Remarks (in case validation criteria are not met)",
"Acceptability of the method"),
Arrays.asList("",
Arrays.asList("Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
"",
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies"),
Arrays.asList("CA 7.1.2.1.1 DAR (2009)",
"Evans P.G. 2001 TMJ4569B, VV-323245",
"Azoxystrobin Laboratory Degradation Study in Three Soil Types, Sampled from Holland and the United Kingdom",
"Method: RAM 269 Johnson R.I., Tummon O.J., Earl M. 1995 RJ1864B, VV-377731 Johnson R.I., Tummon O.J., Earl M. 1998 RAM 269/02, VV-124072 Johnson R.I., Tummon O.J., Earl M. 2000 RAM 269/03, VV-123986 Validation: Robinson N.J. 2001 TMJ4617B, VV-895845 in a Trial Carried",
"Method: RAM 269 Johnson R.I., Tummon O.J., Earl M. 1995 RJ1864B, VV-377731 Johnson R.I., Tummon O.J., Earl M. 1998 RAM 269/02, VV-124072 Johnson R.I., Tummon O.J., Earl M. 2000 RAM 269/03, VV-123986 Validation: Robinson N.J. 2001 TMJ4617B, VV-895845",
"LC-MS/MS LOQ: 0.01 mg/kg (R401553 (SYN50165 7), R402173 (SYN501114 )) or 0.02 mg/kg (azoxystrobin, R230310, R234886) Working range: 0.02-1.0 or 0.01-0.5 mg/kg (depending on analyte) Other supporting quantificati on methods: HPLC-UV GC-MSD",
"Y",
"N/A",
@@ -220,6 +301,8 @@ public class PdfSegmentationServiceTest extends AbstractTest {
ClassificationDocument document = buildClassificationDocument(Loader.loadPDF(pdfFileResource.getFile()));
toHtml(document, "/tmp/html.html");
validateTableSize(document, 4);
validateTable(document, 0, 3, 2, 0, 0);
@@ -231,17 +314,29 @@ public class PdfSegmentationServiceTest extends AbstractTest {
@Test
@Disabled // FIXME Fake Redactions leads to more cells, no solution for this currently
public void testDocA20622APartB9Page185() throws IOException {
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/A20622A izRMS (CZ) fRR Part B9_Page185.pdf");
ClassificationDocument document = buildClassificationDocument(Loader.loadPDF(pdfFileResource.getFile()));
validateTableSize(document, 2);
validateTableSize(document, 1);
validateTable(document, 0, 5, 5, 0, 23);
validateTable(document, 1, 11, 9, 0, 36);
validateTable(document, 0, 7, 4, 0, 0);
}
@Test
public void testDocA20622APartB9Page185FixedDoc() throws IOException {
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/A20622A izRMS (CZ) fRR Part B9_Page185_fixed.pdf");
ClassificationDocument document = buildClassificationDocument(Loader.loadPDF(pdfFileResource.getFile()));
validateTableSize(document, 1);
validateTable(document, 0, 7, 4, 0, 0);
}
@@ -328,7 +423,7 @@ public class PdfSegmentationServiceTest extends AbstractTest {
ClassificationDocument document = buildClassificationDocument(Loader.loadPDF(pdfFileResource.getFile()));
validateTableSize(document, 1);
validateTable(document, 0, 10, 6, 0, 1);
validateTable(document, 0, 10, 6, 0, 0);
}
@@ -450,8 +545,8 @@ public class PdfSegmentationServiceTest extends AbstractTest {
validateTableSize(document, 2);
validateTable(document, 0, 6, 8, 0, 2);
validateTable(document, 1, 6, 8, 0, 1);
validateTable(document, 0, 6, 8, 0, 0);
validateTable(document, 1, 6, 8, 0, 0);
}
@@ -484,12 +579,37 @@ public class PdfSegmentationServiceTest extends AbstractTest {
}
@SneakyThrows
private void toHtml(ClassificationDocument document, String filename) {
var tables = document.getSections().stream().flatMap(paragraph -> paragraph.getTables().stream()).toList();
StringBuilder sb = new StringBuilder();
int currentPage = 1;
for (var table : tables) {
if (currentPage != table.getPage()) {
currentPage = table.getPage();
sb.append("---------------------- Page ").append(currentPage).append("--------------\n");
}
sb.append("\n\n");
sb.append(table.getTextAsHtml());
}
try (FileOutputStream fileOutputStream = new FileOutputStream(Path.of(filename).toFile())) {
fileOutputStream.write(sb.toString().getBytes());
}
}
private void validateTable(ClassificationDocument document, int tableIndex, int colCount, int rowCount, int emptyCellsCountCorrect, int emptyCellsCountIncorrect) {
TablePageBlock table = document.getSections().stream().flatMap(paragraph -> paragraph.getTables().stream()).toList().get(tableIndex);
List<List<Cell>> rows = table.getRows();
int emptyCellsFoundFound = rows.stream().flatMap(List::stream).toList().stream().filter(f -> f.toString().equals("")).toList().size();
for (List<Cell> row : table.getRows()) {
row.forEach(r -> System.out.println(r.toString()));
}
assertThat(emptyCellsFoundFound).isEqualTo(emptyCellsCountCorrect + emptyCellsCountIncorrect);
assertThat(table.getColCount()).isEqualTo(colCount);
@@ -1,21 +1,39 @@
package com.knecon.fforesight.service.layoutparser.server.services;
import java.nio.file.Files;
import java.nio.file.Path;
import java.util.Collections;
import java.util.LinkedList;
import java.util.List;
import org.apache.pdfbox.Loader;
import org.apache.pdfbox.pdmodel.PDDocument;
import org.junit.jupiter.api.Test;
import org.springframework.core.io.ClassPathResource;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.DocumentData;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.DocumentStructure;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.NodeType;
import com.knecon.fforesight.service.layoutparser.internal.api.queue.LayoutParsingType;
import com.knecon.fforesight.service.layoutparser.processor.model.PageContents;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Document;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Table;
import com.knecon.fforesight.service.layoutparser.processor.model.table.CleanRulings;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.image.ImageServiceResponse;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.TableServiceResponse;
import com.knecon.fforesight.service.layoutparser.processor.services.PageContentExtractor;
import com.knecon.fforesight.service.layoutparser.processor.services.RulingCleaningService;
import com.knecon.fforesight.service.layoutparser.processor.services.factory.DocumentGraphFactory;
import com.knecon.fforesight.service.layoutparser.processor.services.mapper.DocumentDataMapper;
import com.knecon.fforesight.service.layoutparser.processor.services.mapper.PropertiesMapper;
import com.knecon.fforesight.service.layoutparser.processor.services.visualization.LayoutGridService;
import com.knecon.fforesight.service.layoutparser.processor.services.visualization.ViewerDocumentService;
import com.knecon.fforesight.service.layoutparser.server.utils.BuildDocumentTest;
import com.knecon.fforesight.service.layoutparser.server.utils.visualizations.PdfDraw;
import lombok.SneakyThrows;
public class RulingCleaningServiceTest {
public class RulingCleaningServiceTest extends BuildDocumentTest {
@Test
// @Disabled
@@ -25,13 +43,96 @@ public class RulingCleaningServiceTest {
String fileName = "files/211.pdf";
String lineFileName = "/tmp/" + Path.of(fileName).getFileName().toString() + "_LINES.pdf";
List<PageContents> pageContents = PageContentExtractor.getSortedPageContents(fileName);
PdfDraw.drawLinesPerPage(fileName, pageContents.stream().map(PageContents::getRulings).toList(), lineFileName);
RulingCleaningService rulingCleaningService = new RulingCleaningService();
PdfDraw.drawLinesPerPage(fileName, pageContents.stream().map(PageContents::getRulings).toList(), lineFileName);
List<CleanRulings> cleanRulingsPerPage = new LinkedList<>();
for (PageContents pageContent : pageContents) {
cleanRulingsPerPage.add(rulingCleaningService.getCleanRulings(Collections.emptyList(), pageContent.getRulings(), 8, 20));
cleanRulingsPerPage.add(rulingCleaningService.getCleanRulings(Collections.emptyList(), pageContent.getRulings()));
}
}
@Test
@SneakyThrows
public void testTableExtraction() {
LayoutGridService layoutGridService = new LayoutGridService();
ViewerDocumentService viewerDocumentService = new ViewerDocumentService(layoutGridService);
ClassPathResource resource = new ClassPathResource("files");
List<String> pdfFileNames = Files.walk(resource.getFile().toPath())
.filter(path -> path.getFileName().toString().endsWith(".pdf"))
.map(Path::toAbsolutePath)
.map(Path::toString)
.toList();
for (int i = 0; i < pdfFileNames.size(); i++) {
writeJsons(Path.of(pdfFileNames.get(i)));
}
}
@SneakyThrows
private void writeJsons(Path filename) {
Document documentGraphBefore = DocumentGraphFactory.buildDocumentGraph(layoutParsingPipeline.parseLayout(LayoutParsingType.REDACT_MANAGER,
Loader.loadPDF(filename.toFile()),
new ImageServiceResponse(),
new TableServiceResponse()));
Document documentGraphAfter = DocumentGraphFactory.buildDocumentGraph(layoutParsingPipeline.parseLayout(LayoutParsingType.REDACT_MANAGER,
Loader.loadPDF(filename.toFile()),
new ImageServiceResponse(),
new TableServiceResponse()));
DocumentData documentDataBefore = DocumentDataMapper.toDocumentData(documentGraphBefore);
DocumentData documentDataAfter = DocumentDataMapper.toDocumentData(documentGraphAfter);
if (!compareStructures(documentDataBefore.getDocumentStructure(), documentDataAfter.getDocumentStructure(), filename.getFileName().toString())) {
String tmpFileNameBefore = "C:/Users/YANNIK~1/AppData/Local/Temp/before." + filename.getFileName().toString();
try (PDDocument pdDocument = Loader.loadPDF(filename.toFile())) {
PdfDraw.drawDocumentGraph(pdDocument, documentGraphBefore);
pdDocument.save(tmpFileNameBefore);
}
String tmpFileNameAfter = "C:/Users/YANNIK~1/AppData/Local/Temp/after." + filename.getFileName().toString();
try (PDDocument pdDocument = Loader.loadPDF(filename.toFile())) {
PdfDraw.drawDocumentGraph(pdDocument, documentGraphAfter);
pdDocument.save(tmpFileNameAfter);
}
}
}
@SneakyThrows
private boolean compareStructures(DocumentStructure structure1, DocumentStructure structure2, String pdfName) {
List listStructure1 = structure1.streamAllEntries()
.filter(entryData -> entryData.getType().equals(NodeType.TABLE))
.map(DocumentStructure.EntryData::getProperties)
.map(properties -> {
var builder = Table.builder();
PropertiesMapper.parseTableProperties(properties, builder);
return builder.build();
})
.toList();
List listStructure2 = structure2.streamAllEntries()
.filter(entryData -> entryData.getType().equals(NodeType.TABLE))
.map(DocumentStructure.EntryData::getProperties)
.map(properties -> {
var builder = Table.builder();
PropertiesMapper.parseTableProperties(properties, builder);
return builder.build();
})
.toList();
for (int i = 0; i < listStructure1.size(); i++) {
Table tableNode1 = (Table) listStructure1.get(i);
Table tableNode2 = (Table) listStructure2.get(i);
if (tableNode1.getNumberOfRows() != tableNode2.getNumberOfRows() || tableNode1.getNumberOfCols() != tableNode2.getNumberOfCols()) {
return false;
}
}
return true;
}
}
@@ -1,8 +1,15 @@
package com.knecon.fforesight.service.layoutparser.server.utils;
import java.io.InputStream;
import java.util.Optional;
import com.iqser.red.commons.jackson.ObjectMapperFactory;
import com.iqser.red.storage.commons.service.StorageService;
import com.iqser.red.storage.commons.utils.FileSystemBackedStorageService;
import com.knecon.fforesight.service.layoutparser.internal.api.queue.LayoutParsingRequest;
import com.knecon.fforesight.service.layoutparser.internal.api.queue.LayoutParsingType;
import com.knecon.fforesight.service.layoutparser.processor.LayoutParsingStorageService;
import com.knecon.fforesight.service.layoutparser.server.Application;
import com.knecon.fforesight.tenantcommons.TenantContext;
import com.knecon.fforesight.tenantcommons.TenantsClient;
import lombok.SneakyThrows;
import org.junit.jupiter.api.AfterEach;
import org.junit.jupiter.api.BeforeEach;
import org.junit.jupiter.api.extension.ExtendWith;
@@ -12,21 +19,12 @@ import org.springframework.boot.autoconfigure.EnableAutoConfiguration;
import org.springframework.boot.autoconfigure.amqp.RabbitAutoConfiguration;
import org.springframework.boot.test.context.SpringBootTest;
import org.springframework.boot.test.mock.mockito.MockBean;
import org.springframework.context.annotation.ComponentScan;
import org.springframework.context.annotation.Configuration;
import org.springframework.context.annotation.Import;
import org.springframework.context.annotation.*;
import org.springframework.core.io.ClassPathResource;
import org.springframework.test.context.junit.jupiter.SpringExtension;
import com.iqser.red.storage.commons.service.StorageService;
import com.knecon.fforesight.service.layoutparser.internal.api.queue.LayoutParsingRequest;
import com.knecon.fforesight.service.layoutparser.internal.api.queue.LayoutParsingType;
import com.knecon.fforesight.service.layoutparser.processor.LayoutParsingStorageService;
import com.knecon.fforesight.service.layoutparser.server.Application;
import com.knecon.fforesight.tenantcommons.TenantContext;
import com.knecon.fforesight.tenantcommons.TenantsClient;
import lombok.SneakyThrows;
import java.io.InputStream;
import java.util.Optional;
@ExtendWith(SpringExtension.class)
@SpringBootTest(classes = Application.class, webEnvironment = SpringBootTest.WebEnvironment.RANDOM_PORT)
@@ -53,7 +51,6 @@ public abstract class AbstractTest {
protected final static String POSITION_FILE_ID = "positions";
protected final static String PAGES_FILE_ID = "pages";
protected final static String TENANT_ID = "tenant";
protected final static String SECTION_GRID_ID = "section";
protected final static String VIEWER_DOCUMENT_ID = "viewer";
protected final static String SIMPLIFIED_ID = "simplified";
@@ -70,7 +67,6 @@ public abstract class AbstractTest {
.positionBlockFileStorageId(POSITION_FILE_ID)
.pageFileStorageId(PAGES_FILE_ID)
.simplifiedTextStorageId(SIMPLIFIED_ID)
.sectionGridStorageId(SECTION_GRID_ID)
.viewerDocumentStorageId(VIEWER_DOCUMENT_ID)
.build();
}
@@ -116,7 +112,6 @@ public abstract class AbstractTest {
.positionBlockFileStorageId(POSITION_FILE_ID)
.pageFileStorageId(PAGES_FILE_ID)
.simplifiedTextStorageId(SIMPLIFIED_ID)
.sectionGridStorageId(SECTION_GRID_ID)
.viewerDocumentStorageId(VIEWER_DOCUMENT_ID)
.build();
}
@@ -157,6 +152,14 @@ public abstract class AbstractTest {
@ComponentScan("com.knecon.fforesight.service.layoutparser")
public static class TestConfiguration {
@Bean
@Primary
public StorageService inmemoryStorage() {
return new FileSystemBackedStorageService(ObjectMapperFactory.create());
}
}
}
@@ -1,124 +0,0 @@
package com.knecon.fforesight.service.layoutparser.server.utils;
import static java.io.File.createTempFile;
import java.io.File;
import java.io.FileInputStream;
import java.io.FileOutputStream;
import java.io.InputStream;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.stream.Collectors;
import org.apache.commons.io.IOUtils;
import org.springframework.stereotype.Service;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.iqser.red.commons.jackson.ObjectMapperFactory;
import com.iqser.red.storage.commons.exception.StorageObjectDoesNotExist;
import com.iqser.red.storage.commons.service.StorageService;
import lombok.SneakyThrows;
@Service
public class FileSystemBackedStorageService implements StorageService {
private final Map<String, File> dataMap = new HashMap<>();
public FileSystemBackedStorageService() {
}
@SneakyThrows
@Override
public void downloadTo(String tenantId, String objectId, File destinationFile) {
var res = dataMap.get(objectId);
if (res == null) {
throw new StorageObjectDoesNotExist(new RuntimeException());
}
IOUtils.copy(new FileInputStream(res), new FileOutputStream(destinationFile));
}
@Override
public void deleteObject(String tenantId, String objectId) {
dataMap.remove(objectId);
}
@Override
public boolean objectExists(String tenantId, String objectId) {
return dataMap.containsKey(objectId);
}
@Override
@SneakyThrows
public <T> void storeJSONObject(String tenantId, String objectId, T any) {
File tempFile = createTempFile("test", ".tmp");
getMapper().writeValue(new FileOutputStream(tempFile), any);
dataMap.put(objectId, tempFile);
}
private ObjectMapper getMapper() {
return ObjectMapperFactory.create();
}
@Override
@SneakyThrows
public <T> T readJSONObject(String tenantId, String objectId, Class<T> clazz) {
if (dataMap.get(objectId) == null || !dataMap.get(objectId).exists()) {
throw new StorageObjectDoesNotExist("Stored object not found");
}
return getMapper().readValue(new FileInputStream(dataMap.get(objectId)), clazz);
}
public List<String> listPaths() {
return new ArrayList<>(dataMap.keySet());
}
public List<String> listFilePaths() {
return dataMap.values().stream().map(File::getAbsolutePath).collect(Collectors.toList());
}
@Override
@SneakyThrows
public void storeObject(String tenantId, String objectId, InputStream stream) {
File tempFile = createTempFile("test", ".tmp");
try (var fileOutputStream = new FileOutputStream(tempFile)) {
IOUtils.copy(stream, fileOutputStream);
}
dataMap.put(objectId, tempFile);
}
public void clearStorage() {
this.dataMap.forEach((k, v) -> {
v.delete();
});
this.dataMap.clear();
}
}