Compare commits

..
25 Commits
Author SHA1 Message Date
Maverick Studer 18a28e82d0 RED-8550: Faulty table recognition and text duplication leads to huge sections
* cherrypick
2024-02-21 14:19:48 +01:00
Kilian Schüttler 3c9049dc8a Merge branch 'RED-8156' into 'main'
RED-8156: refactor ViewerDocumentService as a dependency for ocr-service

See merge request fforesight/layout-parser!99
2024-02-07 10:42:21 +01:00
Kilian Schuettler 015984891f RED-8156: refactor ViewerDocumentService as a dependency for ocr-service
* fix pmd
2024-02-06 17:17:26 +01:00
Kilian Schuettler 66fcb62833 RED-8156: refactor ViewerDocumentService as a dependency for ocr-service
* fix pmd
2024-02-06 17:09:21 +01:00
Kilian Schuettler 48824f56a8 RED-8156: refactor ViewerDocumentService as a dependency for ocr-service
* fix pmd
2024-02-06 17:06:53 +01:00
Kilian Schuettler 785628537f RED-8156: refactor ViewerDocumentService as a dependency for ocr-service
* various improvements to experimental parsing steps
* added embed fonts functionality to viewer doc
* fix checkstyle
2024-02-06 17:03:38 +01:00
Kilian Schuettler 23eb0c40a3 RED-8156: refactor ViewerDocumentService as a dependency for ocr-service
* various improvements to experimental parsing steps
* added embed fonts functionality to viewer doc
2024-02-06 16:59:51 +01:00
Dominique Eifländer 1b4aaf4454 Merge branch 'RED-8171' into 'main'
RED-8171: Traces do not stop at @Async

See merge request fforesight/layout-parser!98
2024-02-02 13:34:44 +01:00
Dominique Eifländer e4f3557b36 RED-8171: Traces do not stop at @Async 2024-02-02 13:22:57 +01:00
Timo Bejan 9be3c86297 Merge branch 'RED-8085' into 'main'
Red 8085

See merge request fforesight/layout-parser!96
2024-01-29 10:31:36 +01:00
Timo Bejan 88855de2da Red 8085 2024-01-29 10:31:36 +01:00
Dominique Eifländer 368a75e985 Merge branch 'RED-8106' into 'main'
RED-8106: Make documentdata serializable

See merge request fforesight/layout-parser!95
2023-12-22 13:33:02 +01:00
Dominique Eifländer 12344d57b2 RED-8106: Make documentdata serializable 2023-12-21 13:42:25 +01:00
Dominique Eifländer 9e854379e7 Merge branch 'RED-1137' into 'main'
RED-1137: Do not observe actuator endpoints

See merge request fforesight/layout-parser!92
2023-12-20 14:11:31 +01:00
Dominique Eifländer b779c72041 RED-1137: Do not observe actuator endpoints 2023-12-20 14:05:00 +01:00
Dominique Eifländer 760a809900 Merge branch 'RED-7384' into 'main'
RED-7384: fixes for migration

See merge request fforesight/layout-parser!91
2023-12-20 12:40:00 +01:00
Kilian Schüttler ba1c7c07ab RED-7384: fixes for migration 2023-12-20 12:40:00 +01:00
Dominique Eifländer ca0cbbcb49 Merge branch 'RED-5223' into 'main'
RED-5223: Use tracing-commons from fforesight

See merge request fforesight/layout-parser!90
2023-12-13 16:05:01 +01:00
Dominique Eifländer da2cdc288e RED-5223: Use tracing-commons from fforesight 2023-12-13 15:31:26 +01:00
Dominique Eifländer 68da328889 Merge branch 'queueHotfix' into 'main'
hotfix: removed dlq from response queue to be equal to persistence-service

See merge request fforesight/layout-parser!89
2023-12-13 09:54:43 +01:00
Dominique Eifländer 711548d1a7 hotfix: removed dlq from response queue to be equal to persistence-service 2023-12-13 09:47:27 +01:00
Dominique Eifländer 2bddcdafee Merge branch 'RED-5223' into 'main'
RED-5223: Enabled tracing, upgrade spring, use logstash-logback-encoder for json logs

See merge request fforesight/layout-parser!88
2023-12-11 15:13:22 +01:00
Dominique Eifländer 750ccf4ce2 RED-5223: Enabled tracing, upgrade spring, use logstash-logback-encoder for json logs 2023-12-11 15:06:23 +01:00
Ali Oezyetimoglu 57b5d3f48e Merge branch 'RED-7714' into 'main'
RED-7715 - Add log4j config to enable switching between json/line logs

See merge request fforesight/layout-parser!87
2023-12-06 13:00:28 +01:00
Andrei Isvoran d8c9659469 RED-7715 - Add log4j config to enable switching between json/line logs 2023-12-06 11:59:42 +02:00
134 changed files with 2164 additions and 3184 deletions
+1 -1
View File
@@ -16,6 +16,6 @@ deploy:
reports:
dotenv: version.env
rules:
- if: $CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH
- if: $CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH
- if: $CI_COMMIT_BRANCH =~ /^release/
- if: $CI_COMMIT_TAG
+15 -34
View File
@@ -1,44 +1,39 @@
# PDF Layout Parser Micro-Service: layout-parser
# PDF Layout Parser Micro-Service: layout-parser
## Introduction
The layout-parser micro-service is a powerful tool designed to efficiently extract structured information from PDF documents. Written in Java and utilizing Spring Boot 3, Apache
PDFBox, and RabbitMQ, this micro-service excels at parsing PDFs and organizing their content into a meaningful and coherent layout structure. Notably, the layout-parser
micro-service distinguishes itself by relying solely on advanced algorithms, rather than machine learning techniques.
The layout-parser micro-service is a powerful tool designed to efficiently extract structured information from PDF documents. Written in Java and utilizing Spring Boot 3, Apache PDFBox, and RabbitMQ, this micro-service excels at parsing PDFs and organizing their content into a meaningful and coherent layout structure. Notably, the layout-parser micro-service distinguishes itself by relying solely on advanced algorithms, rather than machine learning techniques.
### Key Steps in the PDF Layout Parsing Process:
* **Text Position Extraction:**
The micro-service leverages Apache PDFBox to extract precise text positions for each individual character within the PDF document.
The micro-service leverages Apache PDFBox to extract precise text positions for each individual character within the PDF document.
* **Word Segmentation and Text Block Formation:**
Employing an array of diverse algorithms, the micro-service initially identifies and segments words, creating distinct text blocks.
Employing an array of diverse algorithms, the micro-service initially identifies and segments words, creating distinct text blocks.
* **Text Block Classification:**
The segmented text blocks are then subjected to classification algorithms. These algorithms categorize the text blocks based on their content and visual properties,
distinguishing between sections, subsections, headlines, paragraphs, images, tables, table cells, headers, and footers.
The segmented text blocks are then subjected to classification algorithms. These algorithms categorize the text blocks based on their content and visual properties, distinguishing between sections, subsections, headlines, paragraphs, images, tables, table cells, headers, and footers.
* **Layout Coherence Establishment:**
The classified text blocks are subsequently orchestrated into a cohesive layout structure. This process involves arranging sections, subsections, paragraphs, images, and other
elements in a logical and structured manner.
The classified text blocks are subsequently orchestrated into a cohesive layout structure. This process involves arranging sections, subsections, paragraphs, images, and other elements in a logical and structured manner.
* **Output Generation in Various Formats:**
Once the layout structure is established, the micro-service generates output in multiple formats. These formats are designed for seamless integration with downstream
micro-services. The supported formats include JSON, XML, and others, ensuring flexibility in downstream data consumption.
Once the layout structure is established, the micro-service generates output in multiple formats. These formats are designed for seamless integration with downstream micro-services. The supported formats include JSON, XML, and others, ensuring flexibility in downstream data consumption.
### Optional Enhancements:
* **ML-Based Table Extraction:**
For enhanced results, users have the option to incorporate machine learning-based table extraction. This feature can be activated by providing ML-generated results as a JSON
file, which are then integrated seamlessly into the layout structure.
For enhanced results, users have the option to incorporate machine learning-based table extraction. This feature can be activated by providing ML-generated results as a JSON file, which are then integrated seamlessly into the layout structure.
* **Image Classification using ML:**
Additionally, for more accurate image classification, users can optionally feed ML-generated image classification results into the micro-service. Similar to the table extraction
option, the micro-service processes the pre-parsed results in JSON format, thus optimizing the accuracy of image content identification.
Additionally, for more accurate image classification, users can optionally feed ML-generated image classification results into the micro-service. Similar to the table extraction option, the micro-service processes the pre-parsed results in JSON format, thus optimizing the accuracy of image content identification.
In conclusion, the layout-parser micro-service is a versatile PDF layout parsing solution crafted entirely around advanced algorithms, without reliance on machine learning. It proficiently extracts text positions, segments content into meaningful blocks, classifies these blocks, arranges them coherently, and outputs structured data for downstream micro-services. Optional integration with ML-generated table extractions and image classifications further enhances its capabilities.
In conclusion, the layout-parser micro-service is a versatile PDF layout parsing solution crafted entirely around advanced algorithms, without reliance on machine learning. It
proficiently extracts text positions, segments content into meaningful blocks, classifies these blocks, arranges them coherently, and outputs structured data for downstream
micro-services. Optional integration with ML-generated table extractions and image classifications further enhances its capabilities.
## Installation
@@ -54,55 +49,41 @@ To build and test the micro-service, follow these steps:
### Clone the Repository:
bash
```
git clone ssh://git@git.knecon.com:22222/fforesight/layout-parser.git
cd layout-parser
```
### Build the Project:
Use the following command to build the project using Gradle:
```
gradle clean build
```
### Run Tests:
Run the test suite using the following command:
```
gradle test
```
## Building a Custom Docker Image
To create a custom Docker image for the layout-parser micro-service, execute the provided script:
### Ensure Docker is Installed:
Ensure that Docker is installed and running on your system.
### Run the Image Building Script:
Execute the publish-custom-image script in the project directory:
```
./publish-custom-image
```
## Publishing to Internal Maven Repository
To publish the layout-parser micro-service to your internal Maven repository, execute the following command:
```
gradle -Pversion=buildVersion publish
```
Replace buildVersion with the desired version number.
## Additional Notes
Make sure to configure any necessary application properties before deploying the micro-service.
For advanced usage and configurations, refer to Kilian or Dom or preferably the source code.
@@ -24,6 +24,8 @@ tasks.named<Test>("test") {
reports {
junitXml.outputLocation.set(layout.buildDirectory.dir("reports/junit"))
}
minHeapSize = "512m"
maxHeapSize = "2048m"
}
tasks.test {
+5 -4
View File
@@ -9,12 +9,13 @@
</description>
<rule ref="category/java/errorprone.xml">
<exclude name="DataflowAnomalyAnalysis"/>
<exclude name="MissingSerialVersionUID"/>
<exclude name="NullAssignment"/>
<exclude name="AvoidLiteralsInIfCondition"/>
<exclude name="AvoidDuplicateLiterals"/>
<exclude name="AvoidFieldNameMatchingMethodName"/>
<exclude name="NullAssignment"/>
<exclude name="AssignmentInOperand"/>
<exclude name="BeanMembersShouldSerialize"/>
</rule>
</ruleset>
</ruleset>
+4 -4
View File
@@ -10,14 +10,14 @@
<rule ref="category/java/errorprone.xml">
<exclude name="DataflowAnomalyAnalysis"/>
<exclude name="MissingSerialVersionUID"/>
<exclude name="NullAssignment"/>
<exclude name="AvoidLiteralsInIfCondition"/>
<exclude name="AvoidDuplicateLiterals"/>
<exclude name="AvoidFieldNameMatchingMethodName"/>
<exclude name="AvoidFieldNameMatchingTypeName"/>
<exclude name="NullAssignment"/>
<exclude name="AssignmentInOperand"/>
<exclude name="TestClassWithoutTestCases"/>
<exclude name="BeanMembersShouldSerialize"/>
</rule>
</ruleset>
</ruleset>
+1 -1
View File
@@ -1 +1 @@
version = 0.1 - SNAPSHOT
version = 0.1-SNAPSHOT
@@ -1,6 +1,6 @@
plugins {
id("com.knecon.fforesight.java-conventions")
id("io.freefair.lombok") version "8.2.2"
id("io.freefair.lombok") version "8.4"
}
description = "layoutparser-service-internal-api"
@@ -1,5 +1,7 @@
package com.knecon.fforesight.service.layoutparser.internal.api.data.redaction;
import java.io.Serializable;
import io.swagger.v3.oas.annotations.media.Schema;
import lombok.AccessLevel;
import lombok.AllArgsConstructor;
@@ -12,7 +14,7 @@ import lombok.experimental.FieldDefaults;
@AllArgsConstructor
@FieldDefaults(makeFinal = true, level = AccessLevel.PRIVATE)
@Schema(description = "Object containing the complete document layout parsing information. It is split into 4 categories, structure, text, positions and pages: " + "The document tree structure of SemanticNodes such as Section, Paragraph, Headline, etc. " + "The text, which is stored as separate blocks of data. " + "The text positions, which are also stored as separate blocks. The Blocks are equal to the text blocks in length and order. " + "The page information.")
public class DocumentData {
public class DocumentData implements Serializable {
@Schema(description = "Contains information about the document's pages.")
DocumentPage[] documentPages;
@@ -1,5 +1,7 @@
package com.knecon.fforesight.service.layoutparser.internal.api.data.redaction;
import java.io.Serializable;
import io.swagger.v3.oas.annotations.media.Schema;
import lombok.AccessLevel;
import lombok.AllArgsConstructor;
@@ -14,7 +16,7 @@ import lombok.experimental.FieldDefaults;
@AllArgsConstructor
@FieldDefaults(level = AccessLevel.PRIVATE)
@Schema(description = "Object containing information about the document's pages.")
public class DocumentPage {
public class DocumentPage implements Serializable {
@Schema(description = "The page number, starting with 1.")
int number;
@@ -1,5 +1,7 @@
package com.knecon.fforesight.service.layoutparser.internal.api.data.redaction;
import java.io.Serializable;
import io.swagger.v3.oas.annotations.media.Schema;
import lombok.AccessLevel;
import lombok.AllArgsConstructor;
@@ -14,7 +16,7 @@ import lombok.experimental.FieldDefaults;
@AllArgsConstructor
@FieldDefaults(level = AccessLevel.PRIVATE)
@Schema(description = "Object containing text positional information of a specific text block. A document is split into multiple text blocks, which are supposed to be read in order. Every text block can only occur on a single page.")
public class DocumentPositionData {
public class DocumentPositionData implements Serializable {
@Schema(description = "Identifier of the text block.")
Long id;
@@ -1,6 +1,7 @@
package com.knecon.fforesight.service.layoutparser.internal.api.data.redaction;
import java.awt.geom.Rectangle2D;
import java.io.Serializable;
import java.util.Arrays;
import java.util.List;
import java.util.Map;
@@ -20,13 +21,13 @@ import lombok.experimental.FieldDefaults;
@AllArgsConstructor
@FieldDefaults(level = AccessLevel.PRIVATE)
@Schema(description = "Object containing information about the parsed tree structure of the SemanticNodes, such as Section, Paragraph, Headline etc inside of the document.")
public class DocumentStructure {
public class DocumentStructure implements Serializable {
@Schema(description = "The root EntryData represents the Document.")
EntryData root;
@Schema(description = "Object containing the extra field names, a table has in its properties field.")
public static class TableProperties {
public static class TableProperties implements Serializable {
public static final String NUMBER_OF_ROWS = "numberOfRows";
public static final String NUMBER_OF_COLS = "numberOfCols";
@@ -34,7 +35,7 @@ public class DocumentStructure {
}
@Schema(description = "Object containing the extra field names, an Image has in its properties field.")
public static class ImageProperties {
public static class ImageProperties implements Serializable {
public static final String TRANSPARENT = "transparent";
public static final String IMAGE_TYPE = "imageType";
@@ -44,7 +45,7 @@ public class DocumentStructure {
}
@Schema(description = "Object containing the extra field names, a table cell has in its properties field.")
public static class TableCellProperties {
public static class TableCellProperties implements Serializable {
public static final String B_BOX = "bBox";
public static final String ROW = "row";
@@ -100,7 +101,7 @@ public class DocumentStructure {
@AllArgsConstructor
@FieldDefaults(level = AccessLevel.PRIVATE)
@Schema(description = "Object containing information of a SemanticNode and also structuring the layout with children.")
public static class EntryData {
public static class EntryData implements Serializable {
@Schema(description = "Type of the semantic node.", allowableValues = {"DOCUMENT", "SECTION", "PARAGRAPH", "HEADLINE", "TABLE", "TABLE_CELL", "HEADER", "FOOTER", "IMAGE"})
NodeType type;
@@ -1,5 +1,7 @@
package com.knecon.fforesight.service.layoutparser.internal.api.data.redaction;
import java.io.Serializable;
import io.swagger.v3.oas.annotations.media.Schema;
import lombok.AccessLevel;
import lombok.AllArgsConstructor;
@@ -14,7 +16,7 @@ import lombok.experimental.FieldDefaults;
@AllArgsConstructor
@FieldDefaults(level = AccessLevel.PRIVATE)
@Schema(description = "Object containing text information of a specific text block. A document is split into multiple text blocks, which are supposed to be read in order. Every text block can only occur on a single page.")
public class DocumentTextData {
public class DocumentTextData implements Serializable {
@Schema(description = "Identifier of the text block.")
Long id;
@@ -1,8 +1,9 @@
package com.knecon.fforesight.service.layoutparser.internal.api.data.redaction;
import java.io.Serializable;
import java.util.Locale;
public enum NodeType {
public enum NodeType implements Serializable {
DOCUMENT,
SECTION,
HEADLINE,
@@ -17,5 +17,4 @@ public class RowData {
List<ParagraphData> cellText;
@Schema(description = "The bounding box of this StructureObject. Is always exactly 4 values representing x, y, w, h, where x, y specify the lower left corner.")
float[] bBox;
}
@@ -8,9 +8,13 @@ import lombok.Builder;
@Builder
@Schema(description = "Object containing information about the layout parsing.")
public record LayoutParsingFinishedEvent(
@Schema(description = "General purpose identifier. It is returned exactly the same way it is inserted with the LayoutParsingRequest.") Map<String, String> identifier,//
@Schema(description = "The duration of a single layout parsing in ms.") long duration,//
@Schema(description = "The number of pages of the parsed document.") int numberOfPages,//
@Schema(description = "A general message. It contains some information useful for a developer, like the paths where the files are stored. Not meant to be machine readable.") String message) {
@Schema(description = "General purpose identifier. It is returned exactly the same way it is inserted with the LayoutParsingRequest.")
Map<String, String> identifier,//
@Schema(description = "The duration of a single layout parsing in ms.")
long duration,//
@Schema(description = "The number of pages of the parsed document.")
int numberOfPages,//
@Schema(description = "A general message. It contains some information useful for a developer, like the paths where the files are stored. Not meant to be machine readable.")
String message) {
}
@@ -5,5 +5,4 @@ public class LayoutParsingQueueNames {
public static final String LAYOUT_PARSING_REQUEST_QUEUE = "layout_parsing_request_queue";
public static final String LAYOUT_PARSING_DLQ = "layout_parsing_dead_letter_queue";
public static final String LAYOUT_PARSING_FINISHED_EVENT_QUEUE = "layout_parsing_response_queue";
}
@@ -17,35 +17,24 @@ public record LayoutParsingRequest(
Map<String, String> identifier,
@Schema(description = "Path to the original PDF file.")//
@NonNull String originFileStorageId,
//
@Schema(description = "Optional Path to the the visual layout parsing service file") Optional<String> visualLayoutParsingFileId,
@NonNull String originFileStorageId,//
@Schema(description = "Optional Path to the table extraction file.")//
Optional<String> tablesFileStorageId,
//
Optional<String> tablesFileStorageId,//
@Schema(description = "Optional Path to the image classification file.")//
Optional<String> imagesFileStorageId,
//
Optional<String> imagesFileStorageId,//
@Schema(description = "Path where the Document Structure File will be stored.")//
@NonNull String structureFileStorageId,
//
@NonNull String structureFileStorageId,//
@Schema(description = "Path where the Research Data File will be stored.")//
String researchDocumentStorageId,
//
String researchDocumentStorageId,//
@Schema(description = "Path where the Document Text File will be stored.")//
@NonNull String textBlockFileStorageId,
//
@NonNull String textBlockFileStorageId,//
@Schema(description = "Path where the Document Positions File will be stored.")//
@NonNull String positionBlockFileStorageId,
//
@NonNull String positionBlockFileStorageId,//
@Schema(description = "Path where the Document Pages File will be stored.")//
@NonNull String pageFileStorageId,
//
@NonNull String pageFileStorageId,//
@Schema(description = "Path where the Simplified Text File will be stored.")//
@NonNull String simplifiedTextStorageId,
//
@NonNull String simplifiedTextStorageId,//
@Schema(description = "Path where the Viewer Document PDF will be stored.")//
@NonNull String viewerDocumentStorageId) {
@@ -1,6 +1,6 @@
plugins {
id("com.knecon.fforesight.java-conventions")
id("io.freefair.lombok") version "8.2.2"
id("io.freefair.lombok") version "8.4"
}
description = "layoutparser-service-processor"
@@ -10,13 +10,14 @@ val pdfBoxVersion = "3.0.0"
dependencies {
implementation(project(":layoutparser-service-internal-api"))
implementation(project(":viewer-doc-processor"))
implementation("com.iqser.red.service:persistence-service-shared-api-v1:2.144.0") {
exclude("org.springframework.boot", "spring-boot-starter-security")
exclude("org.springframework.boot", "spring-boot-starter-validation")
}
implementation("com.knecon.fforesight:tenant-commons:0.10.0")
implementation("com.iqser.red.commons:storage-commons:2.40.0")
implementation("com.knecon.fforesight:tenant-commons:0.21.0")
implementation("com.iqser.red.commons:storage-commons:2.45.0")
implementation("org.apache.pdfbox:pdfbox:${pdfBoxVersion}")
implementation("org.apache.pdfbox:pdfbox-tools:${pdfBoxVersion}")
@@ -3,13 +3,16 @@ package com.knecon.fforesight.service.layoutparser.processor;
import static java.lang.String.format;
import java.awt.geom.Rectangle2D;
import java.io.ByteArrayOutputStream;
import java.io.File;
import java.io.IOException;
import java.nio.file.Files;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.concurrent.atomic.AtomicReference;
import org.apache.pdfbox.Loader;
import org.apache.pdfbox.pdmodel.PDDocument;
import org.apache.pdfbox.pdmodel.PDPage;
import org.apache.pdfbox.pdmodel.common.PDRectangle;
@@ -30,12 +33,9 @@ import com.knecon.fforesight.service.layoutparser.processor.model.text.TextPageB
import com.knecon.fforesight.service.layoutparser.processor.model.text.TextPositionSequence;
import com.knecon.fforesight.service.layoutparser.processor.python_api.adapter.CvTableParsingAdapter;
import com.knecon.fforesight.service.layoutparser.processor.python_api.adapter.ImageServiceResponseAdapter;
import com.knecon.fforesight.service.layoutparser.processor.python_api.adapter.VisualLayoutParsingAdapter;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.image.ImageServiceResponse;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.TableCells;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.TableServiceResponse;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.VisualLayoutParsingResponse;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.VisualLayoutParsingResult;
import com.knecon.fforesight.service.layoutparser.processor.services.BodyTextFrameService;
import com.knecon.fforesight.service.layoutparser.processor.services.RulingCleaningService;
import com.knecon.fforesight.service.layoutparser.processor.services.SectionsBuilderService;
@@ -51,134 +51,183 @@ import com.knecon.fforesight.service.layoutparser.processor.services.factory.Doc
import com.knecon.fforesight.service.layoutparser.processor.services.mapper.DocumentDataMapper;
import com.knecon.fforesight.service.layoutparser.processor.services.mapper.TaasDocumentDataMapper;
import com.knecon.fforesight.service.layoutparser.processor.services.parsing.PDFLinesTextStripper;
import com.knecon.fforesight.service.layoutparser.processor.services.visualization.ViewerDocumentService;
import com.knecon.fforesight.service.layoutparser.processor.services.visualization.LayoutGridService;
import com.knecon.fforesight.service.layoutparser.processor.utils.MarkedContentUtils;
import io.micrometer.observation.Observation;
import io.micrometer.observation.ObservationRegistry;
import io.micrometer.observation.annotation.Observed;
import lombok.AccessLevel;
import lombok.RequiredArgsConstructor;
import lombok.SneakyThrows;
import lombok.experimental.FieldDefaults;
import lombok.extern.slf4j.Slf4j;
@SuppressWarnings("PMD.CloseResource")
@Slf4j
@Service
@RequiredArgsConstructor
@FieldDefaults(makeFinal = true, level = AccessLevel.PRIVATE)
public class LayoutParsingPipeline {
private final ImageServiceResponseAdapter imageServiceResponseAdapter;
private final CvTableParsingAdapter cvTableParsingAdapter;
private final LayoutParsingStorageService layoutParsingStorageService;
private final SectionsBuilderService sectionsBuilderService;
private final TaasClassificationService taasClassificationService;
private final RedactManagerClassificationService redactManagerClassificationService;
private final DocuMineClassificationService docuMineClassificationService;
private final SimplifiedSectionTextService simplifiedSectionTextService;
private final BodyTextFrameService bodyTextFrameService;
private final RulingCleaningService rulingCleaningService;
private final TableExtractionService tableExtractionService;
private final VisualLayoutParsingAdapter visualLayoutParsingAdapter;
private final TaasBlockificationService taasBlockificationService;
private final DocuMineBlockificationService docuMineBlockificationService;
private final RedactManagerBlockificationService redactManagerBlockificationService;
private final ViewerDocumentService viewerDocumentService;
ImageServiceResponseAdapter imageServiceResponseAdapter;
CvTableParsingAdapter cvTableParsingAdapter;
LayoutParsingStorageService layoutParsingStorageService;
SectionsBuilderService sectionsBuilderService;
TaasClassificationService taasClassificationService;
RedactManagerClassificationService redactManagerClassificationService;
DocuMineClassificationService docuMineClassificationService;
SimplifiedSectionTextService simplifiedSectionTextService;
BodyTextFrameService bodyTextFrameService;
RulingCleaningService rulingCleaningService;
TableExtractionService tableExtractionService;
TaasBlockificationService taasBlockificationService;
DocuMineBlockificationService docuMineBlockificationService;
RedactManagerBlockificationService redactManagerBlockificationService;
LayoutGridService layoutGridService;
ObservationRegistry observationRegistry;
public LayoutParsingFinishedEvent parseLayoutAndSaveFilesToStorage(LayoutParsingRequest layoutParsingRequest) throws IOException {
long start = System.currentTimeMillis();
log.info("Starting layout parsing for {}", layoutParsingRequest.identifier());
try (PDDocument originDocument = layoutParsingStorageService.getOriginFile(layoutParsingRequest.originFileStorageId())) {
ImageServiceResponse imageServiceResponse = new ImageServiceResponse();
if (layoutParsingRequest.imagesFileStorageId().isPresent()) {
imageServiceResponse = layoutParsingStorageService.getImagesFile(layoutParsingRequest.imagesFileStorageId().get());
}
File originFile = layoutParsingStorageService.getOriginFile(layoutParsingRequest.originFileStorageId());
File viewerDocumentFile = layoutParsingStorageService.getViewerDocFile(layoutParsingRequest.viewerDocumentStorageId())
.orElse(originFile);
TableServiceResponse tableServiceResponse = new TableServiceResponse();
if (layoutParsingRequest.tablesFileStorageId().isPresent()) {
tableServiceResponse = layoutParsingStorageService.getTablesFile(layoutParsingRequest.tablesFileStorageId().get());
}
VisualLayoutParsingResponse visualLayoutParsingResponse = new VisualLayoutParsingResponse();
if (layoutParsingRequest.visualLayoutParsingFileId().isPresent()) {
visualLayoutParsingResponse = layoutParsingStorageService.getExtractedTablesFile(layoutParsingRequest.visualLayoutParsingFileId().get());
}
ClassificationDocument classificationDocument = parseLayout(layoutParsingRequest.layoutParsingType(), originDocument, imageServiceResponse, tableServiceResponse);
Document documentGraph = DocumentGraphFactory.buildDocumentGraph(classificationDocument);
int numberOfPages = originDocument.getNumberOfPages();
layoutParsingStorageService.storeDocumentData(layoutParsingRequest, DocumentDataMapper.toDocumentData(documentGraph));
layoutParsingStorageService.storeSimplifiedText(layoutParsingRequest, simplifiedSectionTextService.toSimplifiedText(documentGraph));
Map<Integer, List<VisualLayoutParsingResult>> extractedTableCells = visualLayoutParsingAdapter.buildExtractedTablesPerPage(visualLayoutParsingResponse);
try (var out = new ByteArrayOutputStream()) {
viewerDocumentService.createViewerDocument(originDocument, documentGraph, out, extractedTableCells, false);
layoutParsingStorageService.storeViewerDocument(layoutParsingRequest, out);
}
if (layoutParsingRequest.layoutParsingType().equals(LayoutParsingType.TAAS)) {
var researchDocumentData = TaasDocumentDataMapper.fromDocument(documentGraph);
layoutParsingStorageService.storeResearchDocumentData(layoutParsingRequest, researchDocumentData);
}
return LayoutParsingFinishedEvent.builder()
.identifier(layoutParsingRequest.identifier())
.numberOfPages(numberOfPages)
.duration(System.currentTimeMillis() - start)
.message(format("""
Layout parsing has finished in %.02f s.
identifiers: %s
%s
Files have been saved with Ids:
Structure: %s
Text: %s
Positions: %s
PageData: %s
Simplified Text: %s
Viewer Doc: %s""",
((float) (System.currentTimeMillis() - start)) / 1000,
layoutParsingRequest.identifier(),
buildSemanticNodeCountMessage(numberOfPages, documentGraph.buildSemanticNodeCounts()),
layoutParsingRequest.structureFileStorageId(),
layoutParsingRequest.textBlockFileStorageId(),
layoutParsingRequest.positionBlockFileStorageId(),
layoutParsingRequest.pageFileStorageId(),
layoutParsingRequest.simplifiedTextStorageId(),
layoutParsingRequest.viewerDocumentStorageId()))
.build();
ImageServiceResponse imageServiceResponse = new ImageServiceResponse();
if (layoutParsingRequest.imagesFileStorageId()
.isPresent()) {
imageServiceResponse = layoutParsingStorageService.getImagesFile(layoutParsingRequest.imagesFileStorageId()
.get());
}
TableServiceResponse tableServiceResponse = new TableServiceResponse();
if (layoutParsingRequest.tablesFileStorageId()
.isPresent()) {
tableServiceResponse = layoutParsingStorageService.getTablesFile(layoutParsingRequest.tablesFileStorageId()
.get());
}
ClassificationDocument classificationDocument = parseLayout(layoutParsingRequest.layoutParsingType(),
originFile,
imageServiceResponse,
tableServiceResponse,
layoutParsingRequest.identifier().toString());
log.info("Building document graph for {}", layoutParsingRequest.identifier());
Document documentGraph = observeBuildDocumentGraph(classificationDocument);
log.info("Creating viewer document for {}", layoutParsingRequest.identifier());
layoutGridService.addLayoutGrid(viewerDocumentFile, documentGraph, viewerDocumentFile, false);
log.info("Storing resulting files for {}", layoutParsingRequest.identifier());
layoutParsingStorageService.storeDocumentData(layoutParsingRequest, DocumentDataMapper.toDocumentData(documentGraph));
layoutParsingStorageService.storeSimplifiedText(layoutParsingRequest, simplifiedSectionTextService.toSimplifiedText(documentGraph));
layoutParsingStorageService.storeViewerDocument(layoutParsingRequest, viewerDocumentFile);
if (layoutParsingRequest.layoutParsingType().equals(LayoutParsingType.TAAS)) {
log.info("Building research document data for {}", layoutParsingRequest.identifier());
var researchDocumentData = TaasDocumentDataMapper.fromDocument(documentGraph);
layoutParsingStorageService.storeResearchDocumentData(layoutParsingRequest, researchDocumentData);
}
if (!viewerDocumentFile.equals(originFile)) {
viewerDocumentFile.delete();
}
originFile.delete();
return LayoutParsingFinishedEvent.builder()
.identifier(layoutParsingRequest.identifier())
.numberOfPages(documentGraph.getNumberOfPages())
.duration(System.currentTimeMillis() - start)
.message(format("""
Layout parsing has finished in %.02f s.
identifiers: %s
%s
Files have been saved with Ids:
Structure: %s
Text: %s
Positions: %s
PageData: %s
Simplified Text: %s
Viewer Doc: %s""",
((float) (System.currentTimeMillis() - start)) / 1000,
layoutParsingRequest.identifier(),
buildSemanticNodeCountMessage(documentGraph.getNumberOfPages(), documentGraph.buildSemanticNodeCounts()),
layoutParsingRequest.structureFileStorageId(),
layoutParsingRequest.textBlockFileStorageId(),
layoutParsingRequest.positionBlockFileStorageId(),
layoutParsingRequest.pageFileStorageId(),
layoutParsingRequest.simplifiedTextStorageId(),
layoutParsingRequest.viewerDocumentStorageId()))
.build();
}
private Document observeBuildDocumentGraph(ClassificationDocument classificationDocument) {
AtomicReference<Document> documentReference = new AtomicReference<>();
Observation.createNotStarted("LayoutParsingPipeline", observationRegistry)
.contextualName("build-document-graph")
.observe(() -> documentReference.set(DocumentGraphFactory.buildDocumentGraph(classificationDocument)));
return documentReference.get();
}
private String buildSemanticNodeCountMessage(int numberOfPages, Map<NodeType, Long> semanticNodeCounts) {
return String.format("%d pages with %d sections, %d headlines, %d paragraphs, %d tables with %d cells, %d headers, and %d footers parsed",
numberOfPages,
semanticNodeCounts.get(NodeType.SECTION) == null ? 0 : semanticNodeCounts.get(NodeType.SECTION),
semanticNodeCounts.get(NodeType.HEADLINE) == null ? 0 : semanticNodeCounts.get(NodeType.HEADLINE),
semanticNodeCounts.get(NodeType.PARAGRAPH) == null ? 0 : semanticNodeCounts.get(NodeType.PARAGRAPH),
semanticNodeCounts.get(NodeType.TABLE) == null ? 0 : semanticNodeCounts.get(NodeType.TABLE),
semanticNodeCounts.get(NodeType.TABLE_CELL) == null ? 0 : semanticNodeCounts.get(NodeType.TABLE_CELL),
semanticNodeCounts.get(NodeType.HEADER) == null ? 0 : semanticNodeCounts.get(NodeType.HEADER),
semanticNodeCounts.get(NodeType.FOOTER) == null ? 0 : semanticNodeCounts.get(NodeType.FOOTER));
numberOfPages,
semanticNodeCounts.get(NodeType.SECTION) == null ? 0 : semanticNodeCounts.get(NodeType.SECTION),
semanticNodeCounts.get(NodeType.HEADLINE) == null ? 0 : semanticNodeCounts.get(NodeType.HEADLINE),
semanticNodeCounts.get(NodeType.PARAGRAPH) == null ? 0 : semanticNodeCounts.get(NodeType.PARAGRAPH),
semanticNodeCounts.get(NodeType.TABLE) == null ? 0 : semanticNodeCounts.get(NodeType.TABLE),
semanticNodeCounts.get(NodeType.TABLE_CELL) == null ? 0 : semanticNodeCounts.get(NodeType.TABLE_CELL),
semanticNodeCounts.get(NodeType.HEADER) == null ? 0 : semanticNodeCounts.get(NodeType.HEADER),
semanticNodeCounts.get(NodeType.FOOTER) == null ? 0 : semanticNodeCounts.get(NodeType.FOOTER));
}
@SneakyThrows
@Observed(name = "LayoutParsingPipeline", contextualName = "parse-layout")
public ClassificationDocument parseLayout(LayoutParsingType layoutParsingType,
PDDocument originDocument,
File originFile,
ImageServiceResponse imageServiceResponse,
TableServiceResponse tableServiceResponse) {
TableServiceResponse tableServiceResponse,
String identifier) {
PDDocument originDocument = openDocument(originFile);
addNumberOfPagesToTrace(originDocument.getNumberOfPages(), Files.size(originFile.toPath()));
Map<Integer, List<TableCells>> pdfTableCells = cvTableParsingAdapter.buildCvParsedTablesPerPage(tableServiceResponse);
Map<Integer, List<ClassifiedImage>> pdfImages = imageServiceResponseAdapter.buildClassifiedImagesPerPage(imageServiceResponse);
ClassificationDocument classificationDocument = new ClassificationDocument();
List<ClassificationPage> classificationPages = new ArrayList<>();
originDocument.setAllSecurityToBeRemoved(true);
long pageCount = originDocument.getNumberOfPages();
for (int pageNumber = 1; pageNumber <= pageCount; pageNumber++) {
if (pageNumber % 100 == 0) {
// re-open document every once in a while to save on RAM. This has no significant performance impact.
// This is due to PDFBox caching all images and some other stuff with Soft References. This dereferences them and forces the freeing of memory.
originDocument.close();
originDocument = openDocument(originFile);
}
if (pageNumber % 100 == 0 || pageNumber == pageCount || pageNumber == 1) {
log.info("Extracting text on Page {} for {}", pageNumber, identifier);
}
classificationDocument.setPages(classificationPages);
PDFLinesTextStripper stripper = new PDFLinesTextStripper();
PDPage pdPage = originDocument.getPage(pageNumber - 1);
@@ -228,21 +277,42 @@ public class LayoutParsingPipeline {
classificationPages.add(classificationPage);
}
bodyTextFrameService.setBodyTextFrames(classificationDocument, layoutParsingType);
originDocument.close();
log.info("Calculating BodyTextFrame for {}", identifier);
bodyTextFrameService.setBodyTextFrames(classificationDocument, layoutParsingType);
log.info("Classify TextBlocks for {}", identifier);
switch (layoutParsingType) {
case TAAS -> taasClassificationService.classifyDocument(classificationDocument);
case DOCUMINE -> docuMineClassificationService.classifyDocument(classificationDocument);
case REDACT_MANAGER -> redactManagerClassificationService.classifyDocument(classificationDocument);
}
log.info("Building Sections for {}", identifier);
sectionsBuilderService.buildSections(classificationDocument);
sectionsBuilderService.addImagesToSections(classificationDocument);
return classificationDocument;
}
private void addNumberOfPagesToTrace(int numberOfPages, long size) {
if (observationRegistry.getCurrentObservation() != null) {
observationRegistry.getCurrentObservation().highCardinalityKeyValue("numberOfPages", String.valueOf(numberOfPages));
observationRegistry.getCurrentObservation().highCardinalityKeyValue("fileSize", String.valueOf(size));
}
}
@SneakyThrows
private PDDocument openDocument(File originFile) {
PDDocument document = Loader.loadPDF(originFile);
document.setAllSecurityToBeRemoved(true);
return document;
}
private Map<String, List<Rectangle2D>> convertMarkedContents(List<PDMarkedContent> pdMarkedContents) {
Map<String, List<Rectangle2D>> markedContentBboxes = new HashMap<>();
@@ -254,9 +324,7 @@ public class LayoutParsingPipeline {
private void increaseDocumentStatistics(ClassificationPage classificationPage, ClassificationDocument document) {
if (!classificationPage.isLandscape()) {
document.getFontSizeCounter().addAll(classificationPage.getFontSizeCounter().getCountPerValue());
}
document.getFontSizeCounter().addAll(classificationPage.getFontSizeCounter().getCountPerValue());
document.getFontCounter().addAll(classificationPage.getFontCounter().getCountPerValue());
document.getTextHeightCounter().addAll(classificationPage.getTextHeightCounter().getCountPerValue());
document.getFontStyleCounter().addAll(classificationPage.getFontStyleCounter().getCountPerValue());
@@ -1,10 +1,24 @@
package com.knecon.fforesight.service.layoutparser.processor;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.context.annotation.Bean;
import org.springframework.context.annotation.ComponentScan;
import org.springframework.context.annotation.Configuration;
import com.knecon.fforesight.service.viewerdoc.service.ViewerDocumentService;
import io.micrometer.observation.ObservationRegistry;
@Configuration
@ComponentScan
public class LayoutParsingServiceProcessorConfiguration {
@Bean
@Autowired
public ViewerDocumentService viewerDocumentService(ObservationRegistry registry) {
return new ViewerDocumentService(registry);
}
}
@@ -1,17 +1,15 @@
package com.knecon.fforesight.service.layoutparser.processor;
import java.io.ByteArrayInputStream;
import java.io.ByteArrayOutputStream;
import java.io.File;
import java.io.FileOutputStream;
import java.io.FileInputStream;
import java.io.IOException;
import java.io.InputStream;
import java.nio.file.Files;
import java.nio.file.Path;
import java.nio.file.Paths;
import java.nio.file.StandardOpenOption;
import java.util.Optional;
import org.apache.commons.io.IOUtils;
import org.apache.pdfbox.Loader;
import org.apache.pdfbox.pdmodel.PDDocument;
import org.springframework.stereotype.Service;
@@ -24,9 +22,9 @@ import com.knecon.fforesight.service.layoutparser.internal.api.data.taas.Researc
import com.knecon.fforesight.service.layoutparser.internal.api.queue.LayoutParsingRequest;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.image.ImageServiceResponse;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.TableServiceResponse;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.VisualLayoutParsingResponse;
import com.knecon.fforesight.tenantcommons.TenantContext;
import io.micrometer.observation.annotation.Observed;
import lombok.RequiredArgsConstructor;
import lombok.SneakyThrows;
import lombok.extern.slf4j.Slf4j;
@@ -39,17 +37,24 @@ public class LayoutParsingStorageService {
private final StorageService storageService;
private final ObjectMapper objectMapper;
@Observed(name = "LayoutParsingStorageService", contextualName = "get-origin-file")
public File getOriginFile(String storageId) throws IOException {
public PDDocument getOriginFile(String storageId) throws IOException {
File tempFile = createTempFile("document", ".pdf");
storageService.downloadTo(TenantContext.getTenantId(), storageId, tempFile);
return tempFile;
}
try (var originDocumentInputStream = getObject(storageId)) {
File tempFile = createTempFile("document", ".pdf");
try (var tempFileOutputStream = new FileOutputStream(tempFile)) {
IOUtils.copy(originDocumentInputStream, tempFileOutputStream);
originDocumentInputStream.close();
}
return Loader.loadPDF(tempFile);
@Observed(name = "LayoutParsingStorageService", contextualName = "get-viewer-doc-file")
public Optional<File> getViewerDocFile(String storageId) throws IOException {
if (!storageService.objectExists(TenantContext.getTenantId(), storageId)) {
return Optional.empty();
}
File tempFile = createTempFile("viewerDocument", ".pdf");
storageService.downloadTo(TenantContext.getTenantId(), storageId, tempFile);
return Optional.of(tempFile);
}
@@ -75,16 +80,7 @@ public class LayoutParsingStorageService {
}
public VisualLayoutParsingResponse getExtractedTablesFile(String storageId) throws IOException {
try (InputStream inputStream = getObject(storageId)) {
VisualLayoutParsingResponse visualLayoutParsingResponse = objectMapper.readValue(inputStream, VisualLayoutParsingResponse.class);
inputStream.close();
return visualLayoutParsingResponse;
}
}
@Observed(name = "LayoutParsingStorageService", contextualName = "store-document-data")
public void storeDocumentData(LayoutParsingRequest layoutParsingRequest, DocumentData documentData) {
storageService.storeJSONObject(TenantContext.getTenantId(), layoutParsingRequest.structureFileStorageId(), documentData.getDocumentStructure());
@@ -125,6 +121,7 @@ public class LayoutParsingStorageService {
}
@Observed(name = "LayoutParsingStorageService", contextualName = "store-simplified-text")
public void storeSimplifiedText(LayoutParsingRequest layoutParsingRequest, SimplifiedText simplifiedText) {
storageService.storeJSONObject(TenantContext.getTenantId(), layoutParsingRequest.simplifiedTextStorageId(), simplifiedText);
@@ -142,10 +139,10 @@ public class LayoutParsingStorageService {
@SneakyThrows
public void storeViewerDocument(LayoutParsingRequest layoutParsingRequest, ByteArrayOutputStream out) {
try (var in = new ByteArrayInputStream(out.toByteArray())) {
@Observed(name = "LayoutParsingStorageService", contextualName = "store-viewer-document")
public void storeViewerDocument(LayoutParsingRequest layoutParsingRequest, File out) {
try (var in = new FileInputStream(out)) {
storageService.storeObject(TenantContext.getTenantId(), layoutParsingRequest.viewerDocumentStorageId(), in);
}
}
@@ -14,6 +14,7 @@ import com.knecon.fforesight.service.layoutparser.processor.model.text.StringFre
import lombok.Data;
import lombok.NonNull;
import lombok.RequiredArgsConstructor;
import org.apache.pdfbox.pdmodel.documentinterchange.markedcontent.PDMarkedContent;
@Data
@RequiredArgsConstructor
@@ -19,5 +19,4 @@ public class PageContents {
Rectangle2D cropBox;
Rectangle2D mediaBox;
List<Ruling> rulings;
}
@@ -12,6 +12,7 @@ import lombok.Setter;
@Setter
@EqualsAndHashCode
@SuppressWarnings("PMD.AvoidFieldNameMatchingMethodName")
public class Boundary implements Comparable<Boundary> {
private int start;
@@ -108,13 +109,11 @@ public class Boundary implements Comparable<Boundary> {
return splitBoundaries;
}
public IntStream intStream() {
return IntStream.range(start, end);
}
public static Boundary merge(Collection<Boundary> boundaries) {
int minStart = boundaries.stream().mapToInt(Boundary::start).min().orElseThrow(IllegalArgumentException::new);
@@ -10,7 +10,6 @@ import java.util.Set;
import java.util.stream.Collectors;
import java.util.stream.Stream;
import com.amazonaws.services.kms.model.NotFoundException;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.NodeType;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.DocumentTree;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.entity.RedactionEntity;
@@ -84,7 +83,7 @@ public class Document implements GenericSemanticNode {
@Override
public Headline getHeadline() {
return streamAllSubNodesOfType(NodeType.HEADLINE).map(node -> (Headline) node).findFirst().orElseThrow(() -> new NotFoundException("No Headlines found in this document!"));
return streamAllSubNodesOfType(NodeType.HEADLINE).map(node -> (Headline) node).findFirst().orElse(Headline.builder().build());
}
@@ -1,7 +1,9 @@
package com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes;
import java.awt.geom.Rectangle2D;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.NodeType;
@@ -34,6 +36,9 @@ public class Footer implements GenericSemanticNode {
@EqualsAndHashCode.Exclude
Set<RedactionEntity> entities = new HashSet<>();
@EqualsAndHashCode.Exclude
Map<Page, Rectangle2D> bBoxCache;
@Override
public NodeType getType() {
@@ -62,4 +67,14 @@ public class Footer implements GenericSemanticNode {
return treeId + ": " + NodeType.FOOTER + ": " + leafTextBlock.buildSummary();
}
@Override
public Map<Page, Rectangle2D> getBBox() {
if (bBoxCache == null) {
bBoxCache = GenericSemanticNode.super.getBBox();
}
return bBoxCache;
}
}
@@ -1,7 +1,9 @@
package com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes;
import java.awt.geom.Rectangle2D;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.NodeType;
@@ -34,6 +36,9 @@ public class Header implements GenericSemanticNode {
@EqualsAndHashCode.Exclude
Set<RedactionEntity> entities = new HashSet<>();
@EqualsAndHashCode.Exclude
Map<Page, Rectangle2D> bBoxCache;
@Override
public boolean isLeaf() {
@@ -62,4 +67,14 @@ public class Header implements GenericSemanticNode {
return treeId + ": " + NodeType.HEADER + ": " + leafTextBlock.buildSummary();
}
@Override
public Map<Page, Rectangle2D> getBBox() {
if (bBoxCache == null) {
bBoxCache = GenericSemanticNode.super.getBBox();
}
return bBoxCache;
}
}
@@ -1,7 +1,9 @@
package com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes;
import java.awt.geom.Rectangle2D;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.NodeType;
@@ -34,6 +36,9 @@ public class Headline implements GenericSemanticNode {
@EqualsAndHashCode.Exclude
Set<RedactionEntity> entities = new HashSet<>();
@EqualsAndHashCode.Exclude
Map<Page, Rectangle2D> bBoxCache;
@Override
public NodeType getType() {
@@ -69,4 +74,14 @@ public class Headline implements GenericSemanticNode {
return this;
}
@Override
public Map<Page, Rectangle2D> getBBox() {
if (bBoxCache == null) {
bBoxCache = GenericSemanticNode.super.getBBox();
}
return bBoxCache;
}
}
@@ -1,7 +1,9 @@
package com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes;
import java.awt.geom.Rectangle2D;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.NodeType;
@@ -32,6 +34,9 @@ public class Paragraph implements GenericSemanticNode {
@EqualsAndHashCode.Exclude
Set<RedactionEntity> entities = new HashSet<>();
@EqualsAndHashCode.Exclude
Map<Page, Rectangle2D> bBoxCache;
@Override
public NodeType getType() {
@@ -60,4 +65,14 @@ public class Paragraph implements GenericSemanticNode {
return treeId + ": " + NodeType.PARAGRAPH + ": " + leafTextBlock.buildSummary();
}
@Override
public Map<Page, Rectangle2D> getBBox() {
if (bBoxCache == null) {
bBoxCache = GenericSemanticNode.super.getBBox();
}
return bBoxCache;
}
}
@@ -1,7 +1,9 @@
package com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes;
import java.awt.geom.Rectangle2D;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.NodeType;
@@ -35,6 +37,9 @@ public class Section implements GenericSemanticNode {
@EqualsAndHashCode.Exclude
Set<RedactionEntity> entities = new HashSet<>();
@EqualsAndHashCode.Exclude
Map<Page, Rectangle2D> bBoxCache;
@Override
public NodeType getType() {
@@ -74,4 +79,14 @@ public class Section implements GenericSemanticNode {
.orElseGet(() -> getParent().getHeadline());
}
@Override
public Map<Page, Rectangle2D> getBBox() {
if (bBoxCache == null) {
bBoxCache = GenericSemanticNode.super.getBBox();
}
return bBoxCache;
}
}
@@ -398,12 +398,11 @@ public interface SemanticNode {
*/
default Map<Page, Rectangle2D> getBBox() {
Map<Page, Rectangle2D> bBoxPerPage = new HashMap<>();
if (isLeaf()) {
return getBBoxFromLeafTextBlock(bBoxPerPage);
return getBBoxFromLeafTextBlock();
}
return getBBoxFromChildren(bBoxPerPage);
return getBBoxFromChildren();
}
@@ -426,25 +425,31 @@ public interface SemanticNode {
/**
* TODO: this produces unwanted results for sections spanning multiple columns.
*
* @param bBoxPerPage initial empty BoundingBox
* Computes the Union of the bounding boxes of all children recursively.
* @return The union of the BoundingBoxes of all children
*/
private Map<Page, Rectangle2D> getBBoxFromChildren(Map<Page, Rectangle2D> bBoxPerPage) {
private Map<Page, Rectangle2D> getBBoxFromChildren() {
return streamChildren().map(SemanticNode::getBBox).reduce((map1, map2) -> {
map1.forEach((page, rectangle) -> map2.merge(page, rectangle, (rect1, rect2) -> rect1.createUnion(rect2).getBounds2D()));
return map2;
}).orElse(bBoxPerPage);
Map<Page, Rectangle2D> bBoxPerPage = new HashMap<>();
List<Map<Page, Rectangle2D>> childrenBBoxes = streamChildren().map(SemanticNode::getBBox).toList();
Set<Page> pages = childrenBBoxes.stream().flatMap(map -> map.keySet().stream()).collect(Collectors.toSet());
for (Page page : pages) {
Rectangle2D bBoxOnPage = childrenBBoxes.stream()
.filter(childBboxPerPage -> childBboxPerPage.containsKey(page))
.map(childBboxPerPage -> childBboxPerPage.get(page))
.collect(RectangleTransformations.collectBBox());
bBoxPerPage.put(page, bBoxOnPage);
}
return bBoxPerPage;
}
/**
* @param bBoxPerPage initial empty BoundingBox
* @return The union of all BoundingBoxes of the TextBlock of this node
*/
private Map<Page, Rectangle2D> getBBoxFromLeafTextBlock(Map<Page, Rectangle2D> bBoxPerPage) {
private Map<Page, Rectangle2D> getBBoxFromLeafTextBlock() {
Map<Page, Rectangle2D> bBoxPerPage = new HashMap<>();
Map<Page, List<AtomicTextBlock>> atomicTextBlockPerPage = getTextBlock().getAtomicTextBlocks().stream().collect(Collectors.groupingBy(AtomicTextBlock::getPage));
atomicTextBlockPerPage.forEach((page, atbs) -> bBoxPerPage.put(page, RectangleTransformations.bBoxUnionAtomicTextBlock(atbs)));
return bBoxPerPage;
@@ -2,10 +2,12 @@ package com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes;
import static java.lang.String.format;
import java.awt.geom.Rectangle2D;
import java.util.Collection;
import java.util.HashSet;
import java.util.List;
import java.util.Locale;
import java.util.Map;
import java.util.Set;
import java.util.stream.IntStream;
import java.util.stream.Stream;
@@ -40,6 +42,8 @@ public class Table implements SemanticNode {
@EqualsAndHashCode.Exclude
Set<RedactionEntity> entities = new HashSet<>();
@EqualsAndHashCode.Exclude
Map<Page, Rectangle2D> bBoxCache;
/**
* Streams all entities in this table, that appear in a row, which contains any of the provided strings.
@@ -207,7 +211,6 @@ public class Table implements SemanticNode {
return IntStream.range(0, numberOfCols).boxed().map(col -> getCell(row, col));
}
/**
* Streams all TableCells row-wise and filters them with header == true.
*
@@ -312,5 +315,12 @@ public class Table implements SemanticNode {
return treeId.toString() + ": " + NodeType.TABLE + ": #cols: " + numberOfCols + ", #rows: " + numberOfRows + ", " + this.getTextBlock().buildSummary();
}
@Override
public Map<Page, Rectangle2D> getBBox() {
if (bBoxCache == null) {
bBoxCache = SemanticNode.super.getBBox();
}
return bBoxCache;
}
}
@@ -109,7 +109,10 @@ public class AtomicTextBlock implements TextBlock {
}
public static AtomicTextBlock fromAtomicTextBlockData(DocumentTextData documentTextData, DocumentPositionData documentPositionData, SemanticNode parent, Page page) {
public static AtomicTextBlock fromAtomicTextBlockData(DocumentTextData documentTextData,
DocumentPositionData documentPositionData,
SemanticNode parent,
Page page) {
return AtomicTextBlock.builder()
.id(documentTextData.getId())
@@ -76,4 +76,14 @@ public class Cell extends Rectangle {
return this.getHeight() >= MIN_SIZE && this.getWidth() >= MIN_SIZE;
}
public boolean nearlyIntersects(Cell other) {
if (this.getHeight() <= 0 || other.getHeight() <= 0) {
return false;
}
double x0 = this.getX() + 2;
double y0 = this.getY() + 2;
return (other.x + other.width > x0 && other.y + other.height > y0 && other.x < x0 + this.getWidth() - 2 && other.y < y0 + this.getHeight() - 2);
}
}
@@ -19,7 +19,7 @@ import lombok.extern.slf4j.Slf4j;
@Slf4j
public class TablePageBlock extends AbstractPageBlock {
private final TreeMap<CellPosition, Cell> cells = new TreeMap<>();
private final TreeMap<CellPosition, Cell> cellTreeMap = new TreeMap<>();
private final int rotation;
@Getter
@@ -28,10 +28,14 @@ public class TablePageBlock extends AbstractPageBlock {
private int unrotatedRowCount;
private int unrotatedColCount;
private List<List<Cell>> rows;
@Getter
@Setter
private List<Cell> cells;
public TablePageBlock(List<Cell> cells, Rectangle area, int rotation) {
this.cells = cells;
addCells(cells);
minX = area.getLeft();
minY = area.getBottom();
@@ -79,7 +83,10 @@ public class TablePageBlock extends AbstractPageBlock {
public int getColCount() {
return getRows().stream().mapToInt(List::size).max().orElse(0);
return getRows().stream()
.mapToInt(List::size)
.max()
.orElse(0);
}
@@ -119,7 +126,8 @@ public class TablePageBlock extends AbstractPageBlock {
List<Cell> cellsToTheTop = new ArrayList<>();
for (int i = 0; i < rowIndex; i++) {
try {
cellsToTheTop.add(rows.get(i).get(colIndex));
cellsToTheTop.add(rows.get(i)
.get(colIndex));
} catch (IndexOutOfBoundsException e) {
log.debug("No cell {} in row {}, ignoring.", colIndex, rowIndex);
}
@@ -134,7 +142,8 @@ public class TablePageBlock extends AbstractPageBlock {
if (lastHeaderCell != null) {
cell.getHeaderCells().add(lastHeaderCell);
}
if (!cell.getTextBlocks().isEmpty() && cell.getTextBlocks().get(0).getMostPopularWordStyle().equals("bold")) {
if (!cell.getTextBlocks().isEmpty() && cell.getTextBlocks()
.get(0).getMostPopularWordStyle().equals("bold")) {
cell.setHeaderCell(true);
}
}
@@ -150,7 +159,7 @@ public class TablePageBlock extends AbstractPageBlock {
for (int i = 0; i < unrotatedColCount; i++) { // rows
List<Cell> lastRow = new ArrayList<>();
for (int j = unrotatedRowCount - 1; j >= 0; j--) { // cols
Cell cell = cells.get(new CellPosition(j, i));
Cell cell = cellTreeMap.get(new CellPosition(j, i));
if (cell != null) {
lastRow.add(cell);
}
@@ -161,7 +170,7 @@ public class TablePageBlock extends AbstractPageBlock {
for (int i = unrotatedColCount - 1; i >= 0; i--) { // rows
List<Cell> lastRow = new ArrayList<>();
for (int j = 0; j < unrotatedRowCount; j++) { // cols
Cell cell = cells.get(new CellPosition(j, i));
Cell cell = cellTreeMap.get(new CellPosition(j, i));
if (cell != null) {
lastRow.add(cell);
}
@@ -172,7 +181,7 @@ public class TablePageBlock extends AbstractPageBlock {
for (int i = 0; i < unrotatedRowCount; i++) {
List<Cell> lastRow = new ArrayList<>();
for (int j = 0; j < unrotatedColCount; j++) {
Cell cell = cells.get(new CellPosition(i, j)); // JAVA_8 use getOrDefault()
Cell cell = cellTreeMap.get(new CellPosition(i, j)); // JAVA_8 use getOrDefault()
if (cell != null) {
lastRow.add(cell);
}
@@ -186,17 +195,6 @@ public class TablePageBlock extends AbstractPageBlock {
}
private void add(Cell chunk, int row, int col) {
unrotatedRowCount = Math.max(unrotatedRowCount, row + 1);
unrotatedColCount = Math.max(unrotatedColCount, col + 1);
CellPosition cp = new CellPosition(row, col);
cells.put(cp, chunk);
}
private void addCells(List<Cell> cells) {
if (cells.isEmpty()) {
@@ -205,11 +203,12 @@ public class TablePageBlock extends AbstractPageBlock {
cells.removeIf(cell -> cell.getWidth() < 1.1 || cell.getHeight() < 1.1);
List<List<Cell>> rowsOfCells = calculateStructure(cells);
List<List<Cell>> rowsOfCellsMatrix = calculateTableStructure(cells);
for (int i = 0; i < rowsOfCells.size(); i++) {
for (int j = 0; j < rowsOfCells.get(i).size(); j++) {
add(rowsOfCells.get(i).get(j), i, j);
for (int i = 0; i < rowsOfCellsMatrix.size(); i++) {
for (int j = 0; j < rowsOfCellsMatrix.get(i).size(); j++) {
addCellToRowAndCol(rowsOfCellsMatrix.get(i)
.get(j), i, j);
}
}
@@ -220,29 +219,36 @@ public class TablePageBlock extends AbstractPageBlock {
* Calculates the structure of the table. For spanning rows and columns multiple cells with the same values will be inserted.
*
* @param cells The found cells
* @return TablePageBlock Structure
* @return TablePageBlock Structure as a rows of cells matrix
*/
private List<List<Cell>> calculateStructure(List<Cell> cells) {
List<List<Cell>> matrix = new ArrayList<>();
private List<List<Cell>> calculateTableStructure(List<Cell> cells) {
if (cells.isEmpty()) {
return matrix;
return new ArrayList<>();
}
Set<Float> uniqueX = new HashSet<>();
Set<Float> uniqueY = new HashSet<>();
cells.stream().filter(c -> !c.getTextBlocks().isEmpty() || c.getHeight() > 3 && c.getWidth() > 3).forEach(c -> {
uniqueX.add(c.getLeft());
uniqueX.add(c.getRight());
uniqueY.add(c.getBottom());
uniqueY.add(c.getTop());
});
cells.stream()
.filter(c -> !c.getTextBlocks().isEmpty() || c.getHeight() > 3 && c.getWidth() > 3)
.forEach(c -> {
uniqueX.add(c.getLeft());
uniqueX.add(c.getRight());
uniqueY.add(c.getBottom());
uniqueY.add(c.getTop());
});
var sortedUniqueX = uniqueX.stream().sorted().toList();
var sortedUniqueY = uniqueY.stream().sorted().toList();
var sortedUniqueX = uniqueX.stream()
.sorted()
.toList();
var sortedUniqueY = uniqueY.stream()
.sorted()
.toList();
List<List<Cell>> rowsOfCells = new ArrayList<>();
Float prevY = null;
for (Float y : sortedUniqueY) {
List<Cell> row = new ArrayList<>();
@@ -253,36 +259,79 @@ public class TablePageBlock extends AbstractPageBlock {
if (prevY != null && prevX != null) {
var cell = new Cell(new Point2D.Float(prevX, prevY), new Point2D.Float(x, y));
var intersectionCell = cells.stream().filter(c -> intersects(cell, c)).findFirst();
intersectionCell.ifPresent(value -> cell.getTextBlocks().addAll(value.getTextBlocks()));
if (cell.hasMinimumSize()) {
cells.stream()
.filter(cell::nearlyIntersects)
.forEach(intersectingCell -> cell.getTextBlocks().addAll(intersectingCell.getTextBlocks()));
row.add(cell);
}
}
prevX = x;
}
if (prevY != null && prevX != null && !row.isEmpty()) {
matrix.add(row);
// exclude empty rows and rows where all text blocks are empty
if (prevY != null && prevX != null && !row.isEmpty() && !row.stream()
.allMatch(cell -> cell.getTextBlocks().isEmpty())) {
rowsOfCells.add(row);
}
prevY = y;
}
Collections.reverse(matrix);
Collections.reverse(rowsOfCells);
return matrix;
// now cells are removed which are part of a column without any text blocks
// this is done by first computing the inverse matrix which contains call columns of cells
// then the column indices that have to be removed are determined
List<List<Cell>> columnsOfCells = new ArrayList<>();
int maxRowLength = rowsOfCells.stream()
.map(List::size)
.max(java.util.Comparator.naturalOrder())
.orElse(0);
for (int i = 0; i < maxRowLength; i++) {
columnsOfCells.add(new ArrayList<>());
}
for (List<Cell> row : rowsOfCells) {
for (int j = 0; j < row.size(); j++) {
columnsOfCells.get(j).add(row.get(j));
}
}
List<Integer> columnIndicesToRemove = new ArrayList<>();
int columnIndex = 0;
for (List<Cell> col : columnsOfCells) {
if (col.stream()
.allMatch(cell -> cell.getTextBlocks().isEmpty())) {
columnIndicesToRemove.add(columnIndex);
}
columnIndex++;
}
columnIndicesToRemove.sort(Collections.reverseOrder());
// update all rows so that the values of the empty columns get removed
var rowsOfCellsBefore = new ArrayList<>(rowsOfCells);
rowsOfCells = new ArrayList<>();
for (List<Cell> row : rowsOfCellsBefore) {
var updatedRow = new ArrayList<>(row);
columnIndicesToRemove.forEach(idxToRemove -> updatedRow.remove(updatedRow.get(idxToRemove)));
rowsOfCells.add(updatedRow);
}
return rowsOfCells;
}
public boolean intersects(Cell cell1, Cell cell2) {
private void addCellToRowAndCol(Cell cell, int row, int col) {
unrotatedRowCount = Math.max(unrotatedRowCount, row + 1);
unrotatedColCount = Math.max(unrotatedColCount, col + 1);
CellPosition cp = new CellPosition(row, col);
cellTreeMap.put(cp, cell);
if (cell1.getHeight() <= 0 || cell2.getHeight() <= 0) {
return false;
}
double x0 = cell1.getX() + 2;
double y0 = cell1.getY() + 2;
return (cell2.x + cell2.width > x0 && cell2.y + cell2.height > y0 && cell2.x < x0 + cell1.getWidth() - 2 && cell2.y < y0 + cell1.getHeight() - 2);
}
@@ -309,7 +358,7 @@ public class TablePageBlock extends AbstractPageBlock {
if (!first) {
sb.append("\n");
}
sb.append('\"').append(textBlock.getText().replaceAll("\"", "\\\"")).append('\"');
sb.append('\"').append(textBlock.getText().replaceAll("\"", "\"")).append('\"');
first = false;
}
}
@@ -2,7 +2,6 @@ package com.knecon.fforesight.service.layoutparser.processor.model.text;
import java.util.ArrayList;
import java.util.List;
import com.knecon.fforesight.service.layoutparser.processor.utils.TextNormalizationUtilities;
import lombok.Getter;
@@ -73,7 +73,7 @@ public class TextPageBlock extends AbstractPageBlock {
return sequences.get(0).getPageWidth();
}
public static TextPageBlock merge(List<TextPageBlock> textBlocksToMerge) {
@@ -82,7 +82,6 @@ public class TextPageBlock extends AbstractPageBlock {
return fromTextPositionSequences(sequences);
}
public static TextPageBlock fromTextPositionSequences(List<TextPositionSequence> wordBlockList) {
TextPageBlock textBlock = null;
@@ -134,6 +133,7 @@ public class TextPageBlock extends AbstractPageBlock {
}
/**
* Returns the minX value in pdf coordinate system.
* Note: This needs to use Pdf Coordinate System where {0,0} rotated with the page rotation.
@@ -9,8 +9,6 @@ import java.util.stream.Collectors;
import org.apache.pdfbox.text.TextPosition;
import com.dslplatform.json.JsonAttribute;
import com.fasterxml.jackson.annotation.JsonIgnore;
import com.iqser.red.service.persistence.service.v1.api.shared.model.redactionlog.Point;
import com.iqser.red.service.persistence.service.v1.api.shared.model.redactionlog.Rectangle;
@@ -142,8 +140,7 @@ public class TextPositionSequence implements CharSequence {
*
* @return the text direction adjusted minX value
*/
@JsonIgnore
@JsonAttribute(ignore = true)
public float getMinXDirAdj() {
return textPositions.get(0).getXDirAdj();
@@ -157,8 +154,7 @@ public class TextPositionSequence implements CharSequence {
*
* @return the text direction adjusted maxX value
*/
@JsonIgnore
@JsonAttribute(ignore = true)
public float getMaxXDirAdj() {
return textPositions.get(textPositions.size() - 1).getXDirAdj() + textPositions.get(textPositions.size() - 1).getWidthDirAdj() + HEIGHT_PADDING;
@@ -172,8 +168,7 @@ public class TextPositionSequence implements CharSequence {
*
* @return the text direction adjusted minY value. The upper border of the bounding box of the word.
*/
@JsonIgnore
@JsonAttribute(ignore = true)
public float getMinYDirAdj() {
return textPositions.get(0).getYDirAdj() - getTextHeight();
@@ -187,8 +182,7 @@ public class TextPositionSequence implements CharSequence {
*
* @return the text direction adjusted maxY value. The lower border of the bounding box of the word.
*/
@JsonIgnore
@JsonAttribute(ignore = true)
public float getMaxYDirAdj() {
return textPositions.get(0).getYDirAdj();
@@ -196,32 +190,24 @@ public class TextPositionSequence implements CharSequence {
}
@JsonIgnore
@JsonAttribute(ignore = true)
public float getTextHeight() {
return textPositions.get(0).getHeightDir() + HEIGHT_PADDING;
}
@JsonIgnore
@JsonAttribute(ignore = true)
public float getHeight() {
return getMaxYDirAdj() - getMinYDirAdj();
}
@JsonIgnore
@JsonAttribute(ignore = true)
public float getWidth() {
return getMaxXDirAdj() - getMinXDirAdj();
}
@JsonIgnore
@JsonAttribute(ignore = true)
public String getFont() {
if (textPositions.get(0).getFontName() == null) {
@@ -231,8 +217,6 @@ public class TextPositionSequence implements CharSequence {
}
@JsonIgnore
@JsonAttribute(ignore = true)
public String getFontStyle() {
if (textPositions.get(0).getFontName() == null) {
@@ -252,16 +236,12 @@ public class TextPositionSequence implements CharSequence {
}
@JsonIgnore
@JsonAttribute(ignore = true)
public float getFontSize() {
return textPositions.get(0).getFontSizeInPt();
}
@JsonIgnore
@JsonAttribute(ignore = true)
public float getSpaceWidth() {
return textPositions.get(0).getWidthOfSpace();
@@ -277,8 +257,7 @@ public class TextPositionSequence implements CharSequence {
*
* @return bounding box of the word in Pdf Coordinate System
*/
@JsonIgnore
@JsonAttribute(ignore = true)
@SneakyThrows
public Rectangle getRectangle() {
@@ -1,8 +0,0 @@
package com.knecon.fforesight.service.layoutparser.processor.model.visualization;
import java.awt.Color;
import java.awt.geom.Line2D;
public record ColoredLine(Line2D line, Color color) {
}
@@ -1,7 +0,0 @@
package com.knecon.fforesight.service.layoutparser.processor.model.visualization;
import java.awt.geom.Point2D;
public record PlacedText(String text, Point2D lineStart) {
}
@@ -9,10 +9,10 @@ import java.util.Map;
import org.springframework.stereotype.Service;
import com.knecon.fforesight.service.layoutparser.processor.model.ClassificationPage;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.ImageType;
import com.knecon.fforesight.service.layoutparser.processor.model.image.ClassifiedImage;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.image.ImageServiceResponse;
import com.knecon.fforesight.service.layoutparser.processor.model.ClassificationPage;
import com.knecon.fforesight.service.layoutparser.processor.model.image.ClassifiedImage;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.ImageType;
import lombok.RequiredArgsConstructor;
@@ -20,7 +20,8 @@ import lombok.RequiredArgsConstructor;
@RequiredArgsConstructor
public class ImageServiceResponseAdapter {
public Map<Integer, List<ClassifiedImage>> buildClassifiedImagesPerPage(ImageServiceResponse imageServiceResponse) {
public Map<Integer, List<ClassifiedImage>> buildClassifiedImagesPerPage(ImageServiceResponse imageServiceResponse ) {
Map<Integer, List<ClassifiedImage>> images = new HashMap<>();
imageServiceResponse.getData().forEach(imageMetadata -> {
@@ -1,52 +0,0 @@
package com.knecon.fforesight.service.layoutparser.processor.python_api.adapter;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import org.springframework.stereotype.Service;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.TableCells;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.VisualLayoutParsingBox;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.VisualLayoutParsingResponse;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.VisualLayoutParsingResult;
import lombok.RequiredArgsConstructor;
@Service
@RequiredArgsConstructor
public class VisualLayoutParsingAdapter {
public Map<Integer, List<VisualLayoutParsingResult>> buildExtractedTablesPerPage(VisualLayoutParsingResponse visualLayoutParsingResponse) {
Map<Integer, List<VisualLayoutParsingResult>> tableCells = new HashMap<>();
visualLayoutParsingResponse.getData()
.forEach(tableData -> tableCells.computeIfAbsent(tableData.getPage_idx(), tableCell -> new ArrayList<>()).addAll(convertTableCells(tableData.getBoxes())));
return tableCells;
}
public List<VisualLayoutParsingResult> convertTableCells(List<VisualLayoutParsingBox> tableObjects) {
List<VisualLayoutParsingResult> parsedTableCells = new ArrayList<>();
tableObjects.stream().forEach(t -> {
VisualLayoutParsingResult result = new VisualLayoutParsingResult();
result.setX0(t.getBox().getX1());
result.setX1(t.getBox().getX2());
result.setY0(t.getBox().getY1());
result.setY1(t.getBox().getY2());
result.setWidth(result.getX1() - result.getX0());
result.setHeight(result.getY1() - result.getY0());
result.setLabel(t.getLabel());
parsedTableCells.add(result);
});
return parsedTableCells;
}
}
@@ -1,5 +0,0 @@
package com.knecon.fforesight.service.layoutparser.processor.python_api.model.table;
public class ExtractedTable {
}
@@ -1,20 +0,0 @@
package com.knecon.fforesight.service.layoutparser.processor.python_api.model.table;
import java.util.List;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@Builder
@NoArgsConstructor
@AllArgsConstructor
public class VisualLayoutParsingBox {
private VisualLayoutParsingBoxValue box;
private String label;
private float probability;
}
@@ -1,19 +0,0 @@
package com.knecon.fforesight.service.layoutparser.processor.python_api.model.table;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@Builder
@NoArgsConstructor
@AllArgsConstructor
public class VisualLayoutParsingBoxValue {
private float x1;
private float y1;
private float x2;
private float y2;
}
@@ -1,20 +0,0 @@
package com.knecon.fforesight.service.layoutparser.processor.python_api.model.table;
import java.util.List;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@Builder
@NoArgsConstructor
@AllArgsConstructor
public class VisualLayoutParsingData {
private int page_idx;
private List<VisualLayoutParsingBox> boxes;
}
@@ -1,23 +0,0 @@
package com.knecon.fforesight.service.layoutparser.processor.python_api.model.table;
import java.util.List;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@Builder
@NoArgsConstructor
@AllArgsConstructor
public class VisualLayoutParsingResponse {
private String dossierId;
private String fileId;
private String targetFileExtension;
private String responseFileExtension;
private String X_TENANT_ID;
private List<VisualLayoutParsingData> data;
}
@@ -1,22 +0,0 @@
package com.knecon.fforesight.service.layoutparser.processor.python_api.model.table;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@Builder
@NoArgsConstructor
@AllArgsConstructor
public class VisualLayoutParsingResult {
private float x0;
private float y0;
private float x1;
private float y1;
private float width;
private float height;
private String label;
}
@@ -25,7 +25,6 @@ public class BodyTextFrameService {
private static final float RULING_HEIGHT_THRESHOLD = 0.15f; // multiplied with page height. Header/Footer Rulings must be within that border of the page.
private static final float RULING_WIDTH_THRESHOLD = 0.75f; // multiplied with page width. Header/Footer Rulings must be at least that wide.
public void setBodyTextFrames(ClassificationDocument classificationDocument, LayoutParsingType layoutParsingType) {
Rectangle bodyTextFrame = calculateBodyTextFrame(classificationDocument.getPages(), classificationDocument.getFontSizeCounter(), false, layoutParsingType);
@@ -156,9 +155,8 @@ public class BodyTextFrameService {
continue;
}
if (MarkedContentUtils.intersects(textBlock, page.getMarkedContentBboxPerType(), MarkedContentUtils.HEADER) || MarkedContentUtils.intersects(textBlock,
page.getMarkedContentBboxPerType(),
MarkedContentUtils.FOOTER)) {
if (MarkedContentUtils.intersects(textBlock, page.getMarkedContentBboxPerType(), MarkedContentUtils.HEADER)
|| MarkedContentUtils.intersects(textBlock, page.getMarkedContentBboxPerType(), MarkedContentUtils.FOOTER)) {
continue;
}
@@ -22,6 +22,7 @@ public class DividingColumnDetectionService {
public List<Rectangle2D> detectColumns(PageContents pageContents) {
if (pageContents.getSortedTextPositionSequences().size() < 2) {
return List.of(pageContents.getCropBox());
}
@@ -72,13 +72,11 @@ public class GapDetectionService {
return mirrorY(RectangleTransformations.toRectangle2D(textPosition.getRectangle()));
}
private static Rectangle2D mirrorY(Rectangle2D rectangle2D) {
return new Rectangle2D.Double(rectangle2D.getX(), Math.min(rectangle2D.getMinY(), rectangle2D.getMaxY()), rectangle2D.getWidth(), Math.abs(rectangle2D.getHeight()));
}
private static void addGapToLine(Rectangle2D currentTextPosition, Rectangle2D previousTextPosition, XGapsContext context) {
context.gapsInCurrentLine.add(new Rectangle2D.Double(previousTextPosition.getMaxX(),
@@ -6,6 +6,7 @@ import java.util.LinkedList;
import java.util.List;
import java.util.Queue;
import java.util.stream.Stream;
import com.iqser.red.commons.jackson.ObjectMapperFactory;
import com.knecon.fforesight.service.layoutparser.processor.model.GapInformation;
@@ -50,9 +51,7 @@ public class GapsAcrossLinesService {
}
return columnFactory.outputGaps.stream()
.filter(gapAcrossLines -> columnFactory.outputGaps.stream()
.filter(gapAcrossLines::intersectsX)
.noneMatch(gapAcrossLines1 -> gapAcrossLines1.lineCount > gapAcrossLines.lineCount))
.filter(gapAcrossLines -> columnFactory.outputGaps.stream().filter(gapAcrossLines::intersectsX).noneMatch(gapAcrossLines1 -> gapAcrossLines1.lineCount > gapAcrossLines.lineCount))
.filter(gapAcrossLines -> Math.abs(gapAcrossLines.rectangle2D.getMinX() - mainBodyTextFrame.getMinX()) > DISTANCE_TO_BORDER_THRESHOLD)
.filter(gapAcrossLines -> Math.abs(gapAcrossLines.rectangle2D.getMaxX() - mainBodyTextFrame.getMaxX()) > DISTANCE_TO_BORDER_THRESHOLD)
.map(GapAcrossLines::getRectangle2D)
@@ -6,8 +6,8 @@ import java.util.List;
import com.knecon.fforesight.service.layoutparser.processor.model.GapInformation;
import com.knecon.fforesight.service.layoutparser.processor.model.LineInformation;
import com.knecon.fforesight.service.layoutparser.processor.model.text.TextPositionSequence;
import com.knecon.fforesight.service.layoutparser.processor.utils.RectangleTransformations;
import com.knecon.fforesight.service.layoutparser.processor.model.text.TextPositionSequence;
import lombok.AllArgsConstructor;
import lombok.Getter;
@@ -16,7 +16,8 @@ public class MainBodyTextFrameExtractionService {
public Rectangle2D calculateMainBodyTextFrame(LineInformation lineInformation) {
Rectangle2D mainBodyTextFrame = lineInformation.getLineBBox().stream().collect(RectangleTransformations.collectBBox());
Rectangle2D mainBodyTextFrame = lineInformation.getLineBBox().stream()
.collect(RectangleTransformations.collectBBox());
return RectangleTransformations.pad(mainBodyTextFrame, mainBodyTextFrame.getWidth() * TEXT_FRAME_PAD_WIDTH, mainBodyTextFrame.getHeight() * TEXT_FRAME_PAD_HEIGHT);
}
@@ -52,7 +52,7 @@ public class PageContentExtractor {
stripper.getRulings()));
}
}
return textPositionSequencesPerPage;
}
@@ -25,7 +25,8 @@ import lombok.extern.slf4j.Slf4j;
@RequiredArgsConstructor
public class RulingCleaningService {
private static final float THRESHOLD = 6;
private static final float THRESHOLD_Y = 6;
private static final float THRESHOLD_X = 2;
public CleanRulings getCleanRulings(List<TableCells> tableCells, List<Ruling> rulings) {
@@ -81,7 +82,7 @@ public class RulingCleaningService {
for (Point2D p : points.subList(1, points.size() - 1)) {
List<Point2D> last = groupedPoints.get(groupedPoints.size() - 1);
if (Math.abs(p.getX() - last.get(0).getX()) < THRESHOLD) {
if (Math.abs(p.getX() - last.get(0).getX()) < THRESHOLD_X) {
groupedPoints.get(groupedPoints.size() - 1).add(p);
} else {
groupedPoints.add(new ArrayList<>(Collections.singletonList(p)));
@@ -108,7 +109,7 @@ public class RulingCleaningService {
for (Point2D p : points.subList(1, points.size() - 1)) {
List<Point2D> last = groupedPoints.get(groupedPoints.size() - 1);
if (Math.abs(p.getY() - last.get(0).getY()) < THRESHOLD) {
if (Math.abs(p.getY() - last.get(0).getY()) < THRESHOLD_Y) {
groupedPoints.get(groupedPoints.size() - 1).add(p);
} else {
groupedPoints.add(new ArrayList<>(Collections.singletonList(p)));
@@ -5,9 +5,9 @@ import java.util.List;
import org.springframework.stereotype.Service;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.SimplifiedSectionText;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.SimplifiedText;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Document;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Section;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.SimplifiedText;
@Service
public class SimplifiedSectionTextService {
@@ -23,5 +23,4 @@ public class SimplifiedSectionTextService {
return SimplifiedSectionText.builder().sectionNumber(section.getTreeId().get(0)).text(section.getTextBlock().getSearchText()).build();
}
}
@@ -5,7 +5,6 @@ import java.util.ArrayList;
import java.util.Comparator;
import java.util.HashMap;
import java.util.HashSet;
import java.util.Iterator;
import java.util.List;
import java.util.Map;
import java.util.Set;
@@ -25,55 +24,62 @@ import com.knecon.fforesight.service.layoutparser.processor.utils.DoubleComparis
@Service
public class TableExtractionService {
private static final Comparator<Point2D> X_FIRST_POINT_COMPARATOR = (arg0, arg1) -> {
private static final int MAX_TABLE_OUTER_POINT_TOLERANCE = 10;
private static final int MAX_TABLE_CONTAINED_CELLS_WITH_TEXT = 1;
private static final float SPREADSHEET_AREA_TOLERANCE = 0.001f;
private static final Comparator<Point2D> X_FIRST_POINT_COMPARATOR = (point1, point2) -> {
int rv = 0;
float arg0X = DoubleComparisons.round(arg0.getX(), 2);
float arg0Y = DoubleComparisons.round(arg0.getY(), 2);
float arg1X = DoubleComparisons.round(arg1.getX(), 2);
float arg1Y = DoubleComparisons.round(arg1.getY(), 2);
float point1X = DoubleComparisons.round(point1.getX(), 2);
float point1Y = DoubleComparisons.round(point1.getY(), 2);
float point2X = DoubleComparisons.round(point2.getX(), 2);
float point2Y = DoubleComparisons.round(point2.getY(), 2);
if (arg0X > arg1X) {
if (point1X > point2X) {
rv = 1;
} else if (arg0X < arg1X) {
} else if (point1X < point2X) {
rv = -1;
} else if (arg0Y > arg1Y) {
} else if (point1Y > point2Y) {
rv = 1;
} else if (arg0Y < arg1Y) {
} else if (point1Y < point2Y) {
rv = -1;
}
return rv;
};
private static final Comparator<Point2D> POINT_COMPARATOR = (arg0, arg1) -> {
private static final Comparator<Point2D> Y_FIRST_POINT_COMPARATOR = (point1, point2) -> {
int rv = 0;
float arg0X = DoubleComparisons.round(arg0.getX(), 2);
float arg0Y = DoubleComparisons.round(arg0.getY(), 2);
float arg1X = DoubleComparisons.round(arg1.getX(), 2);
float arg1Y = DoubleComparisons.round(arg1.getY(), 2);
float point1X = DoubleComparisons.round(point1.getX(), 2);
float point1Y = DoubleComparisons.round(point1.getY(), 2);
float point2X = DoubleComparisons.round(point2.getX(), 2);
float point2Y = DoubleComparisons.round(point2.getY(), 2);
if (arg0Y > arg1Y) {
if (point1Y > point2Y) {
rv = 1;
} else if (arg0Y < arg1Y) {
} else if (point1Y < point2Y) {
rv = -1;
} else if (arg0X > arg1X) {
} else if (point1X > point2X) {
rv = 1;
} else if (arg0X < arg1X) {
} else if (point1X < point2X) {
rv = -1;
}
return rv;
};
private static final Comparator<Cell> CELL_SIZE_COMPARATOR = (cell1, cell2) -> {
public boolean contains(Cell cell, double x, double y, double w, double h) {
Double cell1Size = cell1.getHeight() * cell1.getWidth();
Double cell2Size = cell2.getHeight() * cell2.getWidth();
return cell1Size.compareTo(cell2Size);
};
if (cell.isEmpty() || w <= 0 || h <= 0) {
return false;
}
double x0 = cell.getX();
double y0 = cell.getY();
return (x >= x0 - 2 && y >= y0 - 2 && (x + w) <= x0 + cell.getWidth() + 2 && (y + h) <= y0 + cell.getHeight() + 2);
}
private static final Comparator<Rectangle> RECTANGLE_SIZE_COMPARATOR = (rect1, rect2) -> {
Double rect1Size = rect1.getHeight() * rect1.getWidth();
Double rect2Size = rect2.getHeight() * rect2.getWidth();
return rect1Size.compareTo(rect2Size);
};
/**
@@ -89,22 +95,18 @@ public class TableExtractionService {
* @param cleanRulings The lines used to build the table.
* @param page Page object that contains textblocks and statistics.
*/
public void extractTables(CleanRulings cleanRulings, ClassificationPage page) {
List<Cell> cells = findCells(cleanRulings.getHorizontal(), cleanRulings.getVertical());
List<TextPageBlock> toBeRemoved = new ArrayList<>();
// sort cells by size (height * width) ascending so that textBlocks are always assigned to the smallest cells that contain them
cells.sort(CELL_SIZE_COMPARATOR);
for (AbstractPageBlock abstractPageBlock : page.getTextBlocks()) {
TextPageBlock textBlock = (TextPageBlock) abstractPageBlock;
for (Cell cell : cells) {
if (cell.hasMinimumSize() && contains(cell,
textBlock.getPdfMinX(),
textBlock.getPdfMinY(),
textBlock.getPdfMaxX() - textBlock.getPdfMinX(),
textBlock.getPdfMaxY() - textBlock.getPdfMinY())) {
if (cell.hasMinimumSize() && doesCellContainTextBlock(cell, textBlock)) {
cell.addTextBlock(textBlock);
toBeRemoved.add(textBlock);
break;
}
}
@@ -114,39 +116,70 @@ public class TableExtractionService {
DoubleComparisons.sort(cells, Rectangle.ILL_DEFINED_ORDER);
List<Rectangle> spreadsheetAreas = findSpreadsheetsFromCells(cells);
// sort spreadsheetAreas by size (height * width) ascending so that cells are placed in the smallest tables first
// this way no cell duplication occurs when tables are contained in other tables and only the most inner table contains the cells
spreadsheetAreas.sort(RECTANGLE_SIZE_COMPARATOR);
List<TablePageBlock> tables = new ArrayList<>();
for (Rectangle area : spreadsheetAreas) {
List<Cell> overlappingCells = new ArrayList<>();
List<Cell> containedCells = new ArrayList<>();
for (Cell c : cells) {
if (c.hasMinimumSize() && c.intersects(area)) {
overlappingCells.add(c);
if (c.hasMinimumSize() && area.contains(c)) {
containedCells.add(c);
}
}
tables.add(new TablePageBlock(overlappingCells, area, page.getRotation()));
var containedCellsWithText = containedCells.stream()
.filter(cell -> !cell.getTextBlocks().isEmpty())
.count();
// verify if table would contain fewer cells with text than the threshold allows
if (containedCellsWithText >= MAX_TABLE_CONTAINED_CELLS_WITH_TEXT) {
tables.add(new TablePageBlock(containedCells, area, page.getRotation()));
cells.removeAll(containedCells);
}
}
for (TablePageBlock table : tables) {
int position = -1;
Iterator<AbstractPageBlock> itty = page.getTextBlocks().iterator();
while (itty.hasNext()) {
AbstractPageBlock textBlock = itty.next();
if (textBlock instanceof TextPageBlock ? table.containsBlock((TextPageBlock) textBlock) : table.contains(textBlock) && position == -1) {
position = page.getTextBlocks().indexOf(textBlock);
for (AbstractPageBlock pageBlock : page.getTextBlocks()) {
if (pageBlock instanceof TextPageBlock ? table.containsBlock((TextPageBlock) pageBlock) : table.contains(pageBlock) && position == -1) {
position = page.getTextBlocks().indexOf(pageBlock);
}
}
if (position != -1) {
page.getTextBlocks().add(position, table);
var toBeRemoved = table.getCells()
.stream()
.map(Cell::getTextBlocks)
.flatMap(List::stream)
.toList();
// remove text blocks from the page that were also added with the table (from its contained cells)
page.getTextBlocks().removeAll(toBeRemoved);
}
}
page.getTextBlocks().removeAll(toBeRemoved);
}
public List<Cell> findCells(List<Ruling> horizontalRulingLines, List<Ruling> verticalRulingLines) {
private boolean doesCellContainTextBlock(Cell cell, TextPageBlock textBlock) {
double x = textBlock.getPdfMinX();
double y = textBlock.getPdfMinY();
double w = textBlock.getPdfMaxX() - textBlock.getPdfMinX();
double h = textBlock.getPdfMaxY() - textBlock.getPdfMinY();
if (cell.isEmpty() || w <= 0 || h <= 0) {
return false;
}
double x0 = cell.getX();
double y0 = cell.getY();
return (x >= x0 - 2 && y >= y0 - 2 && (x + w) <= x0 + cell.getWidth() + 2 && (y + h) <= y0 + cell.getHeight() + 2);
}
private List<Cell> findCells(List<Ruling> horizontalRulingLines, List<Ruling> verticalRulingLines) {
// Fix for 211.pdf
for (Ruling r : horizontalRulingLines) {
@@ -160,7 +193,7 @@ public class TableExtractionService {
List<Cell> cellsFound = new ArrayList<>();
Map<Point2D, Ruling[]> intersectionPoints = Ruling.findIntersections(horizontalRulingLines, verticalRulingLines);
List<Point2D> intersectionPointsList = new ArrayList<>(intersectionPoints.keySet());
intersectionPointsList.sort(POINT_COMPARATOR);
intersectionPointsList.sort(Y_FIRST_POINT_COMPARATOR);
for (int i = 0; i < intersectionPointsList.size(); i++) {
Point2D topLeft = intersectionPointsList.get(i);
@@ -186,13 +219,14 @@ public class TableExtractionService {
continue;
}
for (Point2D yPoint : yPoints) {
// is there an horizontal edge b/w topLeft and yPoint ?
// is there a horizontal edge b/w topLeft and yPoint ?
if (!hv[0].equals(intersectionPoints.get(yPoint)[0])) {
continue;
}
Point2D btmRight = new Point2D.Float((float) yPoint.getX(), (float) xPoint.getY());
if (intersectionPoints.containsKey(btmRight) && intersectionPoints.get(btmRight)[0].equals(intersectionPoints.get(xPoint)[0]) && intersectionPoints.get(btmRight)[1].equals(
intersectionPoints.get(yPoint)[1])) {
if (intersectionPoints.containsKey(btmRight)
&& intersectionPoints.get(btmRight)[0].equals(intersectionPoints.get(xPoint)[0])
&& intersectionPoints.get(btmRight)[1].equals(intersectionPoints.get(yPoint)[1])) {
cellsFound.add(new Cell(topLeft, btmRight));
break outer;
}
@@ -214,7 +248,6 @@ public class TableExtractionService {
Set<Point2D> pointSet = new HashSet<>();
Map<Point2D, Point2D> edgesH = new HashMap<>();
Map<Point2D, Point2D> edgesV = new HashMap<>();
int i = 0;
for (Rectangle cell : cells) {
for (Point2D pt : cell.getPoints()) {
@@ -231,8 +264,9 @@ public class TableExtractionService {
pointsSortX.sort(X_FIRST_POINT_COMPARATOR);
// Y first sort
List<Point2D> pointsSortY = new ArrayList<>(pointSet);
pointsSortY.sort(POINT_COMPARATOR);
pointsSortY.sort(Y_FIRST_POINT_COMPARATOR);
int i = 0;
while (i < pointSet.size()) {
float currY = (float) pointsSortY.get(i).getY();
while (i < pointSet.size() && DoubleComparisons.feq(pointsSortY.get(i).getY(), currY)) {
@@ -257,7 +291,8 @@ public class TableExtractionService {
Point2D nextVertex;
while (!edgesH.isEmpty()) {
ArrayList<PolygonVertex> polygon = new ArrayList<>();
Point2D first = edgesH.keySet().iterator().next();
Point2D first = edgesH.keySet()
.iterator().next();
polygon.add(new PolygonVertex(first, Direction.HORIZONTAL));
edgesH.remove(first);
@@ -301,7 +336,14 @@ public class TableExtractionService {
bottom = (float) Math.max(bottom, pt.point.getY());
right = (float) Math.max(right, pt.point.getX());
}
rectangles.add(new Rectangle(top, left, right - left, bottom - top));
// do not add polygons with too many outer points as they are unlikely to be tables
if (poly.size() <= MAX_TABLE_OUTER_POINT_TOLERANCE) {
rectangles.add(new Rectangle(top - SPREADSHEET_AREA_TOLERANCE,
left - SPREADSHEET_AREA_TOLERANCE,
right - left + 2 * SPREADSHEET_AREA_TOLERANCE,
bottom - top + 2 * SPREADSHEET_AREA_TOLERANCE));
}
}
return rectangles;
@@ -1,20 +1,9 @@
package com.knecon.fforesight.service.layoutparser.processor.services.blockification;
// TODO: figure out, why this fails the build
// import static com.knecon.fforesight.service.layoutparser.processor.services.factory.SearchTextWithTextPositionFactory.HEIGHT_PADDING;
import java.util.ArrayList;
import java.util.HashSet;
import java.util.Iterator;
import java.util.LinkedList;
import java.util.List;
import java.util.Set;
import java.util.regex.Matcher;
import java.util.regex.Pattern;
import java.util.stream.Stream;
import org.springframework.stereotype.Service;
import com.knecon.fforesight.service.layoutparser.processor.model.AbstractPageBlock;
import com.knecon.fforesight.service.layoutparser.processor.model.ClassificationPage;
import com.knecon.fforesight.service.layoutparser.processor.model.Orientation;
@@ -22,6 +11,12 @@ import com.knecon.fforesight.service.layoutparser.processor.model.table.Ruling;
import com.knecon.fforesight.service.layoutparser.processor.model.text.TextPageBlock;
import com.knecon.fforesight.service.layoutparser.processor.model.text.TextPositionSequence;
import com.knecon.fforesight.service.layoutparser.processor.utils.RulingTextDirAdjustUtil;
import org.springframework.stereotype.Service;
import java.util.*;
import java.util.regex.Matcher;
import java.util.regex.Pattern;
import java.util.stream.Stream;
@Service
@SuppressWarnings("all")
@@ -88,13 +83,13 @@ public class TaasBlockificationService {
continue;
}
Matcher listIdentifierPattern = listIdentifier.matcher(currentTextBlock.getText());
boolean isListIdentifier = listIdentifierPattern.find();
boolean yGap = Math.abs(currentTextBlock.getPdfMaxY() - previousTextBlock.getPdfMinY()) < previousTextBlock.getMostPopularWordHeight() * Y_GAP_SPLIT_HEIGHT_MODIFIER;
boolean sameFont = previousTextBlock.getMostPopularWordFont()
.equals(currentTextBlock.getMostPopularWordFont()) && previousTextBlock.getMostPopularWordFontSize() == currentTextBlock.getMostPopularWordFontSize();
boolean sameFont = previousTextBlock.getMostPopularWordFont().equals(currentTextBlock.getMostPopularWordFont()) && previousTextBlock.getMostPopularWordFontSize() == currentTextBlock.getMostPopularWordFontSize();
// boolean yGap = previousTextBlock != null && currentTextBlock.getMinYDirAdj() - maxY > Math.min(word.getHeight(), prev.getHeight()) * Y_GAP_SPLIT_HEIGHT_MODIFIER;
boolean alignsXRight = Math.abs(currentTextBlock.getPdfMaxX() - previousTextBlock.getPdfMaxX()) < X_ALIGNMENT_THRESHOLD;
@@ -124,9 +119,8 @@ public class TaasBlockificationService {
}
alreadyMerged.add(textPageBlock);
textBlocksToMerge.add(Stream.concat(Stream.of(textPageBlock),
textPageBlocks.stream()
.filter(textPageBlock2 -> textPageBlock.almostIntersects(textPageBlock2, INTERSECTS_Y_THRESHOLD, 0) && !alreadyMerged.contains(textPageBlock2))
.peek(alreadyMerged::add)).toList());
textPageBlocks.stream().filter(textPageBlock2 -> textPageBlock.almostIntersects(textPageBlock2, INTERSECTS_Y_THRESHOLD, 0) && !alreadyMerged.contains(textPageBlock2)).peek(alreadyMerged::add))
.toList());
}
return textBlocksToMerge.stream().map(TextPageBlock::merge).toList();
}
@@ -169,7 +163,8 @@ public class TaasBlockificationService {
while (itty.hasNext()) {
TextPageBlock block = (TextPageBlock) itty.next();
if (previous != null && previous.getOrientation().equals(Orientation.LEFT) && block.getOrientation().equals(Orientation.LEFT) && equalsWithThreshold(block.getMaxY(),
if (previous != null && previous.getOrientation().equals(Orientation.LEFT) && block.getOrientation().equals(Orientation.LEFT) && equalsWithThreshold(
block.getMaxY(),
previous.getMaxY()) || previous != null && previous.getOrientation().equals(Orientation.LEFT) && block.getOrientation()
.equals(Orientation.RIGHT) && equalsWithThreshold(block.getMaxY(), previous.getMaxY())) {
previous.add(block);
@@ -194,6 +189,7 @@ public class TaasBlockificationService {
TextPositionSequence prev = null;
// TODO: make static final constant
boolean wasSplitted = false;
Float splitX1 = null;
for (TextPositionSequence word : textPositions) {
@@ -5,6 +5,7 @@ import java.util.Locale;
import java.util.regex.Matcher;
import java.util.regex.Pattern;
import com.knecon.fforesight.service.layoutparser.processor.utils.MarkedContentUtils;
import org.springframework.stereotype.Service;
import com.knecon.fforesight.service.layoutparser.processor.model.AbstractPageBlock;
@@ -12,7 +13,6 @@ import com.knecon.fforesight.service.layoutparser.processor.model.Classification
import com.knecon.fforesight.service.layoutparser.processor.model.ClassificationPage;
import com.knecon.fforesight.service.layoutparser.processor.model.PageBlockType;
import com.knecon.fforesight.service.layoutparser.processor.model.text.TextPageBlock;
import com.knecon.fforesight.service.layoutparser.processor.utils.MarkedContentUtils;
import com.knecon.fforesight.service.layoutparser.processor.utils.PositionUtils;
import lombok.RequiredArgsConstructor;
@@ -63,16 +63,16 @@ public class DocuMineClassificationService {
textBlock.setClassification(PageBlockType.OTHER);
return;
}
if (MarkedContentUtils.intersects(textBlock, page.getMarkedContentBboxPerType(), MarkedContentUtils.HEADER) || PositionUtils.isOverBodyTextFrame(bodyTextFrame,
textBlock,
page.getRotation()) && (document.getFontSizeCounter().getMostPopular() == null || textBlock.getHighestFontSize() <= document.getFontSizeCounter()
.getMostPopular())) {
if (MarkedContentUtils.intersects(textBlock, page.getMarkedContentBboxPerType(), MarkedContentUtils.HEADER)
|| PositionUtils.isOverBodyTextFrame(bodyTextFrame, textBlock, page.getRotation()) && (document.getFontSizeCounter()
.getMostPopular() == null || textBlock.getHighestFontSize() <= document.getFontSizeCounter().getMostPopular())
) {
textBlock.setClassification(PageBlockType.HEADER);
} else if (MarkedContentUtils.intersects(textBlock, page.getMarkedContentBboxPerType(), MarkedContentUtils.FOOTER) || PositionUtils.isUnderBodyTextFrame(bodyTextFrame,
textBlock,
page.getRotation()) && (document.getFontSizeCounter().getMostPopular() == null || textBlock.getHighestFontSize() <= document.getFontSizeCounter()
.getMostPopular())) {
} else if (MarkedContentUtils.intersects(textBlock, page.getMarkedContentBboxPerType(), MarkedContentUtils.FOOTER)
|| PositionUtils.isUnderBodyTextFrame(bodyTextFrame, textBlock, page.getRotation()) && (document.getFontSizeCounter()
.getMostPopular() == null || textBlock.getHighestFontSize() <= document.getFontSizeCounter().getMostPopular())
) {
textBlock.setClassification(PageBlockType.FOOTER);
} else if (page.getPageNumber() == 1 && (PositionUtils.getHeightDifferenceBetweenChunkWordAndDocumentWord(textBlock,
document.getTextHeightCounter().getMostPopular()) > 2.5 && textBlock.getHighestFontSize() > document.getFontSizeCounter().getMostPopular() || page.getTextBlocks()
@@ -3,6 +3,7 @@ package com.knecon.fforesight.service.layoutparser.processor.services.classifica
import java.util.List;
import java.util.regex.Pattern;
import com.knecon.fforesight.service.layoutparser.processor.utils.MarkedContentUtils;
import org.springframework.stereotype.Service;
import com.knecon.fforesight.service.layoutparser.processor.model.AbstractPageBlock;
@@ -10,7 +11,6 @@ import com.knecon.fforesight.service.layoutparser.processor.model.Classification
import com.knecon.fforesight.service.layoutparser.processor.model.ClassificationPage;
import com.knecon.fforesight.service.layoutparser.processor.model.PageBlockType;
import com.knecon.fforesight.service.layoutparser.processor.model.text.TextPageBlock;
import com.knecon.fforesight.service.layoutparser.processor.utils.MarkedContentUtils;
import com.knecon.fforesight.service.layoutparser.processor.utils.PositionUtils;
import lombok.RequiredArgsConstructor;
@@ -21,6 +21,7 @@ import lombok.extern.slf4j.Slf4j;
@RequiredArgsConstructor
public class RedactManagerClassificationService {
public void classifyDocument(ClassificationDocument document) {
List<Float> headlineFontSizes = document.getFontSizeCounter().getHighterThanMostPopular();
@@ -51,16 +52,14 @@ public class RedactManagerClassificationService {
textBlock.setClassification(PageBlockType.OTHER);
return;
}
if (MarkedContentUtils.intersects(textBlock, page.getMarkedContentBboxPerType(), MarkedContentUtils.HEADER) || PositionUtils.isOverBodyTextFrame(bodyTextFrame,
textBlock,
page.getRotation()) && (document.getFontSizeCounter().getMostPopular() == null || textBlock.getHighestFontSize() <= document.getFontSizeCounter()
.getMostPopular())) {
if (MarkedContentUtils.intersects(textBlock, page.getMarkedContentBboxPerType(), MarkedContentUtils.HEADER)
|| PositionUtils.isOverBodyTextFrame(bodyTextFrame, textBlock, page.getRotation()) && (document.getFontSizeCounter()
.getMostPopular() == null || textBlock.getHighestFontSize() <= document.getFontSizeCounter().getMostPopular())) {
textBlock.setClassification(PageBlockType.HEADER);
} else if (MarkedContentUtils.intersects(textBlock, page.getMarkedContentBboxPerType(), MarkedContentUtils.FOOTER) || PositionUtils.isUnderBodyTextFrame(bodyTextFrame,
textBlock,
page.getRotation()) && (document.getFontSizeCounter().getMostPopular() == null || textBlock.getHighestFontSize() <= document.getFontSizeCounter()
.getMostPopular())) {
} else if (MarkedContentUtils.intersects(textBlock, page.getMarkedContentBboxPerType(), MarkedContentUtils.FOOTER)
|| PositionUtils.isUnderBodyTextFrame(bodyTextFrame, textBlock, page.getRotation()) && (document.getFontSizeCounter()
.getMostPopular() == null || textBlock.getHighestFontSize() <= document.getFontSizeCounter().getMostPopular())) {
textBlock.setClassification(PageBlockType.FOOTER);
} else if (page.getPageNumber() == 1 && (PositionUtils.getHeightDifferenceBetweenChunkWordAndDocumentWord(textBlock,
document.getTextHeightCounter().getMostPopular()) > 2.5 && textBlock.getHighestFontSize() > document.getFontSizeCounter().getMostPopular() || page.getTextBlocks()
@@ -3,6 +3,7 @@ package com.knecon.fforesight.service.layoutparser.processor.services.classifica
import java.util.List;
import java.util.regex.Pattern;
import com.knecon.fforesight.service.layoutparser.processor.utils.MarkedContentUtils;
import org.springframework.stereotype.Service;
import com.knecon.fforesight.service.layoutparser.processor.model.AbstractPageBlock;
@@ -11,7 +12,6 @@ import com.knecon.fforesight.service.layoutparser.processor.model.Classification
import com.knecon.fforesight.service.layoutparser.processor.model.PageBlockType;
import com.knecon.fforesight.service.layoutparser.processor.model.text.TextPageBlock;
import com.knecon.fforesight.service.layoutparser.processor.services.BodyTextFrameService;
import com.knecon.fforesight.service.layoutparser.processor.utils.MarkedContentUtils;
import com.knecon.fforesight.service.layoutparser.processor.utils.PositionUtils;
import lombok.RequiredArgsConstructor;
@@ -27,6 +27,7 @@ public class TaasClassificationService {
public void classifyDocument(ClassificationDocument document) {
List<Float> headlineFontSizes = document.getFontSizeCounter().getHighterThanMostPopular();
log.debug("Document FontSize counters are: {}", document.getFontSizeCounter().getCountPerValue());
@@ -56,13 +57,11 @@ public class TaasClassificationService {
textBlock.setClassification(PageBlockType.OTHER);
return;
}
if (MarkedContentUtils.intersects(textBlock, page.getMarkedContentBboxPerType(), MarkedContentUtils.HEADER) || PositionUtils.isOverBodyTextFrame(bodyTextFrame,
textBlock,
page.getRotation())) {
if (MarkedContentUtils.intersects(textBlock, page.getMarkedContentBboxPerType(), MarkedContentUtils.HEADER)
|| PositionUtils.isOverBodyTextFrame(bodyTextFrame, textBlock, page.getRotation())) {
textBlock.setClassification(PageBlockType.HEADER);
} else if (MarkedContentUtils.intersects(textBlock, page.getMarkedContentBboxPerType(), MarkedContentUtils.FOOTER) || PositionUtils.isUnderBodyTextFrame(bodyTextFrame,
textBlock,
page.getRotation())) {
} else if (MarkedContentUtils.intersects(textBlock, page.getMarkedContentBboxPerType(), MarkedContentUtils.FOOTER)
|| PositionUtils.isUnderBodyTextFrame(bodyTextFrame, textBlock, page.getRotation())) {
textBlock.setClassification(PageBlockType.FOOTER);
} else if (page.getPageNumber() == 1 && (PositionUtils.getHeightDifferenceBetweenChunkWordAndDocumentWord(textBlock,
document.getTextHeightCounter().getMostPopular()) > 2.5 && textBlock.getHighestFontSize() > document.getFontSizeCounter().getMostPopular() || page.getTextBlocks()
@@ -18,6 +18,8 @@ import com.knecon.fforesight.service.layoutparser.processor.model.Classification
import com.knecon.fforesight.service.layoutparser.processor.model.ClassificationFooter;
import com.knecon.fforesight.service.layoutparser.processor.model.ClassificationHeader;
import com.knecon.fforesight.service.layoutparser.processor.model.ClassificationPage;
import com.knecon.fforesight.service.layoutparser.processor.model.image.ClassifiedImage;
import com.knecon.fforesight.service.layoutparser.processor.model.text.TextPageBlock;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.DocumentTree;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Document;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Footer;
@@ -29,8 +31,6 @@ import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Pa
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Paragraph;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Section;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.textblock.AtomicTextBlock;
import com.knecon.fforesight.service.layoutparser.processor.model.image.ClassifiedImage;
import com.knecon.fforesight.service.layoutparser.processor.model.text.TextPageBlock;
import com.knecon.fforesight.service.layoutparser.processor.utils.IdBuilder;
import com.knecon.fforesight.service.layoutparser.processor.utils.TextPositionOperations;
@@ -8,10 +8,10 @@ import java.util.List;
import java.util.Locale;
import java.util.Objects;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.Boundary;
import com.knecon.fforesight.service.layoutparser.processor.model.text.RedTextPosition;
import com.knecon.fforesight.service.layoutparser.processor.model.text.TextDirection;
import com.knecon.fforesight.service.layoutparser.processor.model.text.TextPositionSequence;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.Boundary;
import lombok.experimental.UtilityClass;
@@ -110,7 +110,6 @@ public class SearchTextWithTextPositionFactory {
return context.stringIdx - context.lastHyphenIdx < MAX_HYPHEN_LINEBREAK_DISTANCE;
}
private static List<Boundary> mergeToBoundaries(List<Integer> integers) {
if (integers.isEmpty()) {
@@ -126,9 +125,8 @@ public class SearchTextWithTextPositionFactory {
}
end = current + 1;
}
if (boundaries.isEmpty()) {
if (boundaries.isEmpty())
boundaries.add(new Boundary(start, end));
}
return boundaries;
}
@@ -140,7 +138,6 @@ public class SearchTextWithTextPositionFactory {
}
}
private boolean isLineBreak(RedTextPosition currentTextPosition, RedTextPosition previousTextPosition) {
return Objects.equals(currentTextPosition.getUnicode(), "\n") || isDeltaYLargerThanTextHeight(currentTextPosition, previousTextPosition);
@@ -11,12 +11,12 @@ import java.util.Map;
import java.util.Set;
import com.knecon.fforesight.service.layoutparser.processor.model.AbstractPageBlock;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.GenericSemanticNode;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Page;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Section;
import com.knecon.fforesight.service.layoutparser.processor.model.image.ClassifiedImage;
import com.knecon.fforesight.service.layoutparser.processor.model.table.TablePageBlock;
import com.knecon.fforesight.service.layoutparser.processor.model.text.TextPageBlock;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.GenericSemanticNode;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Page;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Section;
import com.knecon.fforesight.service.layoutparser.processor.utils.TableMergingUtility;
import lombok.experimental.UtilityClass;
@@ -8,15 +8,15 @@ import java.util.Set;
import java.util.stream.Collectors;
import com.knecon.fforesight.service.layoutparser.processor.model.AbstractPageBlock;
import com.knecon.fforesight.service.layoutparser.processor.model.table.Cell;
import com.knecon.fforesight.service.layoutparser.processor.model.table.TablePageBlock;
import com.knecon.fforesight.service.layoutparser.processor.model.text.TextPositionSequence;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.GenericSemanticNode;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Page;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.SemanticNode;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Table;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.TableCell;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.textblock.TextBlock;
import com.knecon.fforesight.service.layoutparser.processor.model.table.Cell;
import com.knecon.fforesight.service.layoutparser.processor.model.table.TablePageBlock;
import com.knecon.fforesight.service.layoutparser.processor.model.text.TextPositionSequence;
import com.knecon.fforesight.service.layoutparser.processor.utils.TextPositionOperations;
import lombok.experimental.UtilityClass;
@@ -2,10 +2,10 @@ package com.knecon.fforesight.service.layoutparser.processor.services.factory;
import java.util.List;
import com.knecon.fforesight.service.layoutparser.processor.model.text.TextPositionSequence;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Page;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.SemanticNode;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.textblock.AtomicTextBlock;
import com.knecon.fforesight.service.layoutparser.processor.model.text.TextPositionSequence;
import lombok.AccessLevel;
import lombok.experimental.FieldDefaults;
@@ -7,11 +7,11 @@ import java.util.List;
import java.util.Map;
import java.util.NoSuchElementException;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.DocumentData;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.DocumentPage;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.DocumentPositionData;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.DocumentStructure;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.DocumentTextData;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.DocumentData;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.DocumentStructure;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.DocumentPage;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.DocumentTree;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Document;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Footer;
@@ -1,6 +1,7 @@
package com.knecon.fforesight.service.layoutparser.processor.services.mapper;
import java.awt.geom.Rectangle2D;
import java.util.Collections;
import java.util.HashMap;
import java.util.Locale;
import java.util.Map;
@@ -8,6 +9,7 @@ import java.util.Map;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.DocumentStructure;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Image;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.ImageType;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Page;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Table;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.TableCell;
@@ -329,7 +329,6 @@ public class PDFLinesTextStripper extends PDFTextStripper {
.getXDirAdj() - (previous.getXDirAdj() + previous.getWidthDirAdj()) < maximumGapSize;
}
@Override
public String getText(PDDocument doc) throws IOException {
@@ -25,23 +25,10 @@ import java.io.StringWriter;
import java.io.Writer;
import java.text.Bidi;
import java.text.Normalizer;
import java.util.ArrayDeque;
import java.util.ArrayList;
import java.util.Collections;
import java.util.Comparator;
import java.util.Deque;
import java.util.HashMap;
import java.util.Iterator;
import java.util.LinkedList;
import java.util.List;
import java.util.Map;
import java.util.SortedMap;
import java.util.SortedSet;
import java.util.StringTokenizer;
import java.util.TreeMap;
import java.util.TreeSet;
import java.util.*;
import java.util.regex.Pattern;
import lombok.Getter;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
import org.apache.pdfbox.cos.COSDictionary;
@@ -59,8 +46,6 @@ import org.apache.pdfbox.text.TextPositionComparator;
import com.knecon.fforesight.service.layoutparser.processor.utils.QuickSort;
import lombok.Getter;
/**
* This is just a copy except i only adjusted lines 594-607 cause this is a bug in Pdfbox.
* see S416.pdf
@@ -209,33 +194,40 @@ public class PDFTextStripper extends LegacyPDFStreamEngine {
}
public void beginMarkedContentSequence(COSName tag, COSDictionary properties) {
public void beginMarkedContentSequence(COSName tag, COSDictionary properties)
{
PDMarkedContent markedContent = PDMarkedContent.create(tag, properties);
if (this.currentMarkedContents.isEmpty()) {
if (this.currentMarkedContents.isEmpty())
{
this.markedContents.add(markedContent);
} else {
PDMarkedContent currentMarkedContent = this.currentMarkedContents.peek();
if (currentMarkedContent != null) {
}
else
{
PDMarkedContent currentMarkedContent =
this.currentMarkedContents.peek();
if (currentMarkedContent != null)
{
currentMarkedContent.addMarkedContent(markedContent);
}
}
this.currentMarkedContents.push(markedContent);
}
@Override
public void endMarkedContentSequence() {
if (!this.currentMarkedContents.isEmpty()) {
public void endMarkedContentSequence()
{
if (!this.currentMarkedContents.isEmpty())
{
this.currentMarkedContents.pop();
}
}
public void xobject(PDXObject xobject) {
if (!this.currentMarkedContents.isEmpty()) {
public void xobject(PDXObject xobject)
{
if (!this.currentMarkedContents.isEmpty())
{
this.currentMarkedContents.peek().addXObject(xobject);
}
}
@@ -643,6 +635,7 @@ public class PDFTextStripper extends LegacyPDFStreamEngine {
var normalized = normalize(line);
// normalized.stream().filter(l -> System.out.println(l.getText().contains("Plenarprotokoll 20/24")).findFirst().isPresent()
lastLineStartPosition = handleLineSeparation(current, lastPosition, lastLineStartPosition, maxHeightForLine);
writeLine(normalized, current.isParagraphStart);
line.clear();
@@ -921,7 +914,8 @@ public class PDFTextStripper extends LegacyPDFStreamEngine {
textList.add(text);
}
}
if (!this.currentMarkedContents.isEmpty()) {
if (!this.currentMarkedContents.isEmpty())
{
this.currentMarkedContents.peek().addText(text);
}
}
@@ -2108,9 +2102,7 @@ public class PDFTextStripper extends LegacyPDFStreamEngine {
return endParagraphWritten;
}
public void setEndParagraphWritten() {
public void setEndParagraphWritten(){
endParagraphWritten = true;
}
@@ -2153,6 +2145,7 @@ public class PDFTextStripper extends LegacyPDFStreamEngine {
this.isHangingIndent = true;
}
}
}
@@ -1,12 +1,11 @@
package com.knecon.fforesight.service.layoutparser.processor.services.visualization;
import static com.knecon.fforesight.service.layoutparser.processor.services.visualization.ViewerDocumentService.LINE_WIDTH;
import java.awt.Color;
import java.awt.geom.Line2D;
import java.awt.geom.Point2D;
import java.awt.geom.Rectangle2D;
import java.awt.geom.RectangularShape;
import java.io.File;
import java.util.ArrayList;
import java.util.Collections;
import java.util.Comparator;
@@ -24,25 +23,59 @@ import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Pa
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.SemanticNode;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Table;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.TableCell;
import com.knecon.fforesight.service.layoutparser.processor.model.visualization.ColoredLine;
import com.knecon.fforesight.service.layoutparser.processor.model.visualization.ColoredRectangle;
import com.knecon.fforesight.service.layoutparser.processor.model.visualization.LayoutGrid;
import com.knecon.fforesight.service.layoutparser.processor.model.visualization.PlacedText;
import com.knecon.fforesight.service.layoutparser.processor.utils.RectangleTransformations;
import com.knecon.fforesight.service.viewerdoc.ContentStreams;
import com.knecon.fforesight.service.viewerdoc.model.ColoredLine;
import com.knecon.fforesight.service.viewerdoc.model.ColoredRectangle;
import com.knecon.fforesight.service.viewerdoc.model.LayoutGrid;
import com.knecon.fforesight.service.viewerdoc.model.PlacedText;
import com.knecon.fforesight.service.viewerdoc.model.Standard14EmbeddableFont;
import com.knecon.fforesight.service.viewerdoc.model.Visualizations;
import com.knecon.fforesight.service.viewerdoc.service.ViewerDocumentService;
import io.micrometer.observation.annotation.Observed;
import lombok.AccessLevel;
import lombok.RequiredArgsConstructor;
import lombok.SneakyThrows;
import lombok.experimental.FieldDefaults;
@Service
@RequiredArgsConstructor
@FieldDefaults(level = AccessLevel.PRIVATE, makeFinal = true)
public class LayoutGridService {
private static final Color INNER_LINES_COLOR = new Color(255, 175, 175);
private static final Color PARAGRAPH_COLOR = new Color(70, 130, 180);
public static final Color TABLE_COLOR = new Color(102, 205, 170);
public static final Color SECTION_COLOR = new Color(50, 50, 50);
public static final Color HEADLINE_COLOR = new Color(162, 56, 56);
public static final Color HEADER_COLOR = new Color(171, 131, 6);
public static final Color IMAGE_COLOR = new Color(253, 63, 146);
ViewerDocumentService viewerDocumentService;
static float FONT_SIZE = 10f;
static float LINE_WIDTH = 1f;
static Standard14EmbeddableFont FONT = Standard14EmbeddableFont.helvetica();
static Color INNER_LINES_COLOR = new Color(255, 175, 175);
static Color PARAGRAPH_COLOR = new Color(70, 130, 180);
static Color TABLE_COLOR = new Color(102, 205, 170);
static Color SECTION_COLOR = new Color(50, 50, 50);
static Color HEADLINE_COLOR = new Color(162, 56, 56);
static Color HEADER_COLOR = new Color(171, 131, 6);
static Color IMAGE_COLOR = new Color(253, 63, 146);
public LayoutGrid createLayoutGrid(Document document) {
@SneakyThrows
@Observed(name = "ViewerDocumentService", contextualName = "create-viewer-document")
public void addLayoutGrid(File originFile, Document document, File destinationFile, boolean layerVisibilityDefaultValue) {
LayoutGrid layoutGrid = createLayoutGrid(document);
viewerDocumentService.addVisualizationsOnPage(originFile,
destinationFile,
Visualizations.builder()
.layer(ContentStreams.KNECON_LAYOUT)
.visualizationsOnPages(layoutGrid.getVisualizationsPerPages())
.layerVisibilityDefaultValue(layerVisibilityDefaultValue)
.build());
}
private LayoutGrid createLayoutGrid(Document document) {
LayoutGrid layoutGrid = new LayoutGrid(document.getNumberOfPages());
document.streamAllSubNodes().forEach(semanticNode -> {
@@ -103,11 +136,11 @@ public class LayoutGridService {
List<ColoredLine> coloredLines = layoutGrid.getVisualizationsPerPages().get(page.getNumber() - 1).getColoredLines();
xs.forEach(x -> {
Line2D line = new Line2D.Double(new Point2D.Double(x, tableBBox.getMaxY()), new Point2D.Double(x, tableBBox.getMinY()));
coloredLines.add(new ColoredLine(line, INNER_LINES_COLOR));
coloredLines.add(new ColoredLine(line, INNER_LINES_COLOR, LINE_WIDTH));
});
ys.forEach(y -> {
Line2D line = new Line2D.Double(new Point2D.Double(tableBBox.getMinX(), y), new Point2D.Double(tableBBox.getMaxX(), y));
coloredLines.add(new ColoredLine(line, INNER_LINES_COLOR));
coloredLines.add(new ColoredLine(line, INNER_LINES_COLOR, LINE_WIDTH));
});
}
}
@@ -135,9 +168,9 @@ public class LayoutGridService {
List<Line2D> lines = createLinesFromRectangle(r, firstPage.getRotation());
// add string to top line
var firstLine = lines.remove(0);
coloredLines.add(new ColoredLine(firstLine, color));
coloredLines.add(new ColoredLine(firstLine, color, LINE_WIDTH));
for (Line2D line : lines) {
coloredLines.add(new ColoredLine(line, color));
coloredLines.add(new ColoredLine(line, color, LINE_WIDTH));
}
return;
}
@@ -152,6 +185,7 @@ public class LayoutGridService {
}
@SneakyThrows
private void addPlacedText(Page page, Rectangle2D textBBox, String s, LayoutGrid layoutGrid) {
Point2D.Float upperLeftCorner = switch (page.getRotation()) {
@@ -161,7 +195,8 @@ public class LayoutGridService {
default -> new Point2D.Float((float) (textBBox.getMinX()), (float) textBBox.getMaxY());
};
var placedTexts = layoutGrid.getVisualizationsPerPages().get(page.getNumber() - 1).getPlacedTexts();
placedTexts.add(new PlacedText(s, upperLeftCorner));
upperLeftCorner.setLocation(upperLeftCorner.getX() - ((FONT.getStringWidth(s) / 1000) * FONT_SIZE + (2 * LINE_WIDTH) + 4), upperLeftCorner.getY() - FONT_SIZE);
placedTexts.add(PlacedText.textFacingUp(s, upperLeftCorner, FONT_SIZE, Color.BLACK, FONT));
}
@@ -176,9 +211,9 @@ public class LayoutGridService {
midPageLines.remove(1);
// add string to left line
var leftLine = midPageLines.remove(1);
coloredLines.add(new ColoredLine(leftLine, color));
coloredLines.add(new ColoredLine(leftLine, color, LINE_WIDTH));
for (Line2D line : midPageLines) {
coloredLines.add(new ColoredLine(line, color));
coloredLines.add(new ColoredLine(line, color, LINE_WIDTH));
}
}
@@ -192,9 +227,9 @@ public class LayoutGridService {
lastPageLines.remove(0);
// add string to left line
var leftLine = lastPageLines.remove(2);
coloredLines.add(new ColoredLine(leftLine, color));
coloredLines.add(new ColoredLine(leftLine, color, LINE_WIDTH));
for (Line2D line : lastPageLines) {
coloredLines.add(new ColoredLine(line, color));
coloredLines.add(new ColoredLine(line, color, LINE_WIDTH));
}
}
@@ -208,9 +243,9 @@ public class LayoutGridService {
firstPageLines.remove(2);
// add string to top line
var firstLine = firstPageLines.remove(0);
coloredLines.add(new ColoredLine(firstLine, color));
coloredLines.add(new ColoredLine(firstLine, color, LINE_WIDTH));
for (Line2D line : firstPageLines) {
coloredLines.add(new ColoredLine(line, color));
coloredLines.add(new ColoredLine(line, color, LINE_WIDTH));
}
}
@@ -276,7 +311,10 @@ public class LayoutGridService {
private void addAsRectangle(SemanticNode semanticNode, LayoutGrid layoutGrid, Color color) {
semanticNode.getBBox()
.forEach((page, textBBox) -> layoutGrid.getVisualizationsPerPages().get(page.getNumber() - 1).getColoredRectangles().add(new ColoredRectangle(textBBox, color)));
.forEach((page, textBBox) -> layoutGrid.getVisualizationsPerPages()
.get(page.getNumber() - 1)
.getColoredRectangles()
.add(new ColoredRectangle(textBBox, color, LINE_WIDTH)));
}
}
@@ -1,212 +0,0 @@
package com.knecon.fforesight.service.layoutparser.processor.services.visualization;
import java.awt.Color;
import java.awt.geom.AffineTransform;
import java.awt.geom.Rectangle2D;
import java.io.IOException;
import java.io.OutputStream;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import org.apache.pdfbox.cos.COSDictionary;
import org.apache.pdfbox.cos.COSName;
import org.apache.pdfbox.pdmodel.PDDocument;
import org.apache.pdfbox.pdmodel.PDDocumentCatalog;
import org.apache.pdfbox.pdmodel.PDPage;
import org.apache.pdfbox.pdmodel.PDPageContentStream;
import org.apache.pdfbox.pdmodel.PDResources;
import org.apache.pdfbox.pdmodel.font.PDFont;
import org.apache.pdfbox.pdmodel.font.PDType1Font;
import org.apache.pdfbox.pdmodel.font.Standard14Fonts;
import org.apache.pdfbox.pdmodel.graphics.optionalcontent.PDOptionalContentGroup;
import org.apache.pdfbox.pdmodel.graphics.optionalcontent.PDOptionalContentProperties;
import org.apache.pdfbox.pdmodel.graphics.state.PDExtendedGraphicsState;
import org.apache.pdfbox.util.Matrix;
import org.springframework.stereotype.Service;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Document;
import com.knecon.fforesight.service.layoutparser.processor.model.visualization.ColoredLine;
import com.knecon.fforesight.service.layoutparser.processor.model.visualization.ColoredRectangle;
import com.knecon.fforesight.service.layoutparser.processor.model.visualization.FilledRectangle;
import com.knecon.fforesight.service.layoutparser.processor.model.visualization.LayoutGrid;
import com.knecon.fforesight.service.layoutparser.processor.model.visualization.PlacedText;
import com.knecon.fforesight.service.layoutparser.processor.model.visualization.VisualizationsOnPage;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.TableCells;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.VisualLayoutParsingResult;
import lombok.RequiredArgsConstructor;
import lombok.SneakyThrows;
import lombok.extern.slf4j.Slf4j;
@Slf4j
@Service
@RequiredArgsConstructor
public class ViewerDocumentService {
private static final String LAYER_NAME = "Layout grid";
private static final int FONT_SIZE = 10;
public static final float LINE_WIDTH = 1f;
private final LayoutGridService layoutGridService;
@SneakyThrows
public void createViewerDocument(PDDocument pdDocument,
Document document,
OutputStream outputStream,
Map<Integer, List<VisualLayoutParsingResult>> extractedTableCells,
boolean layerVisibilityDefaultValue) {
LayoutGrid layoutGrid = layoutGridService.createLayoutGrid(document);
// PDDocument.save() is very slow, since it actually traverses the entire pdf and writes a new one.
// If we collect all COSDictionaries we changed and tell it explicitly to only add the changed ones by using saveIncremental it's very fast.
Set<COSDictionary> dictionariesToUpdate = new HashSet<>();
PDOptionalContentGroup layer = addLayerToDocument(pdDocument, dictionariesToUpdate, layerVisibilityDefaultValue);
PDOptionalContentGroup visualLayoutParsingLayer = addLayerToDocument(pdDocument, dictionariesToUpdate, true);
PDFont font = new PDType1Font(Standard14Fonts.FontName.HELVETICA);
for (int pageNumber = 0; pageNumber < pdDocument.getNumberOfPages(); pageNumber++) {
PDPage pdPage = pdDocument.getPage(pageNumber);
AffineTransform textDeRotationMatrix = getTextDeRotationTransform(pdPage);
addLayerToPageRessources(pdPage);
// We need to save the graphics state before, such that our appended content cannot be affected by previous content streams with side effects,
// e.g. not escaped matrix transformations.
escapePreviousContents(pdDocument, pdPage);
VisualizationsOnPage visualizationsOnPage = layoutGrid.getVisualizationsPerPages().get(pageNumber);
assert pageNumber == visualizationsOnPage.getPageNumber();
// We need to append to the content stream, otherwise the content could be overlapped by following content.
try (var contentStream = new PDPageContentStream(pdDocument, pdPage, PDPageContentStream.AppendMode.APPEND, true)) {
contentStream.beginMarkedContent(COSName.OC, layer);
contentStream.saveGraphicsState();
contentStream.setLineWidth(LINE_WIDTH);
for (ColoredLine coloredLine : visualizationsOnPage.getColoredLines()) {
contentStream.setStrokingColor(coloredLine.color());
contentStream.moveTo((float) coloredLine.line().getX1(), (float) coloredLine.line().getY1());
contentStream.lineTo((float) coloredLine.line().getX2(), (float) coloredLine.line().getY2());
contentStream.stroke();
}
for (ColoredRectangle coloredRectangle : visualizationsOnPage.getColoredRectangles()) {
contentStream.setStrokingColor(coloredRectangle.color());
Rectangle2D r = coloredRectangle.rectangle2D();
contentStream.addRect((float) r.getX(), (float) r.getY(), (float) r.getWidth(), (float) r.getHeight());
contentStream.stroke();
}
for (FilledRectangle filledRectangle : visualizationsOnPage.getFilledRectangles()) {
contentStream.setNonStrokingColor(filledRectangle.color());
PDExtendedGraphicsState graphicsState = new PDExtendedGraphicsState();
graphicsState.setNonStrokingAlphaConstant(filledRectangle.alpha());
contentStream.setGraphicsStateParameters(graphicsState);
Rectangle2D r = filledRectangle.rectangle2D();
contentStream.addRect((float) r.getX(), (float) r.getY(), (float) r.getWidth(), (float) r.getHeight());
contentStream.fill();
}
for (PlacedText placedText : visualizationsOnPage.getPlacedTexts()) {
contentStream.setFont(font, FONT_SIZE);
contentStream.beginText();
Matrix textMatrix = new Matrix((float) textDeRotationMatrix.getScaleX(),
(float) textDeRotationMatrix.getShearX(),
(float) textDeRotationMatrix.getShearY(),
(float) textDeRotationMatrix.getScaleY(),
(float) placedText.lineStart().getX(),
(float) placedText.lineStart().getY());
textMatrix.translate(-((font.getStringWidth(placedText.text()) / 1000) * FONT_SIZE + (2 * LINE_WIDTH) + 4), -FONT_SIZE);
contentStream.setTextMatrix(textMatrix);
contentStream.showText(placedText.text());
contentStream.endText();
}
contentStream.restoreGraphicsState();
contentStream.endMarkedContent();
contentStream.beginMarkedContent(COSName.OC, visualLayoutParsingLayer);
contentStream.saveGraphicsState();
contentStream.setLineWidth(LINE_WIDTH);
for (VisualLayoutParsingResult tableCells : extractedTableCells.get(pageNumber)) {
contentStream.setStrokingColor(new Color(0xFF0000));
contentStream.addRect((float) tableCells.getX0(), (float) tableCells.getY0(), (float) tableCells.getWidth(), (float) tableCells.getHeight());
contentStream.stroke();
contentStream.setFont(font, FONT_SIZE);
contentStream.beginText();
Matrix textMatrix = new Matrix((float) textDeRotationMatrix.getScaleX(),
(float) textDeRotationMatrix.getShearX(),
(float) textDeRotationMatrix.getShearY(),
(float) textDeRotationMatrix.getScaleY(),
tableCells.getX0() ,
tableCells.getY0());
textMatrix.translate(-((font.getStringWidth(tableCells.getLabel()) / 1000) * FONT_SIZE + (2 * LINE_WIDTH) + 4), -FONT_SIZE);
contentStream.setTextMatrix(textMatrix);
contentStream.showText(tableCells.getLabel());
contentStream.endText();
}
contentStream.restoreGraphicsState();
contentStream.endMarkedContent();
}
dictionariesToUpdate.add(pdPage.getCOSObject());
dictionariesToUpdate.add(pdPage.getResources().getCOSObject());
}
dictionariesToUpdate.add(pdDocument.getDocumentInformation().getCOSObject());
// dictionariesToUpdate.add(pdDocument.getDocument().getTrailer());
pdDocument.saveIncremental(outputStream, dictionariesToUpdate);
}
private static void addLayerToPageRessources(PDPage pdPage) {
PDResources resources = pdPage.getResources();
if (resources == null) {
resources = new PDResources();
pdPage.setResources(resources);
}
}
private static void escapePreviousContents(PDDocument pdDocument, PDPage pdPage) throws IOException {
try (var contentStream = new PDPageContentStream(pdDocument, pdPage, PDPageContentStream.AppendMode.PREPEND, false)) {
contentStream.saveGraphicsState();
}
try (var contentStream = new PDPageContentStream(pdDocument, pdPage, PDPageContentStream.AppendMode.APPEND, false)) {
contentStream.restoreGraphicsState();
}
}
private static PDOptionalContentGroup addLayerToDocument(PDDocument pdDocument, Set<COSDictionary> dictionariesToUpdate, boolean layerVisibilityDefaultValue) {
PDDocumentCatalog catalog = pdDocument.getDocumentCatalog();
PDOptionalContentProperties ocprops = catalog.getOCProperties();
if (ocprops == null) {
ocprops = new PDOptionalContentProperties();
catalog.setOCProperties(ocprops);
}
PDOptionalContentGroup layer = null;
if (ocprops.hasGroup(LAYER_NAME)) {
layer = ocprops.getGroup(LAYER_NAME);
} else {
layer = new PDOptionalContentGroup(LAYER_NAME);
ocprops.addGroup(layer);
}
ocprops.setGroupEnabled(layer, layerVisibilityDefaultValue);
dictionariesToUpdate.add(catalog.getCOSObject());
return layer;
}
private static AffineTransform getTextDeRotationTransform(PDPage page) {
return AffineTransform.getQuadrantRotateInstance(switch (page.getRotation()) {
case 90 -> 3;
case 180 -> 2;
case 270 -> 1;
default -> 0;
});
}
}
@@ -1,5 +1,12 @@
package com.knecon.fforesight.service.layoutparser.processor.utils;
import com.knecon.fforesight.service.layoutparser.processor.model.text.TextPageBlock;
import com.knecon.fforesight.service.layoutparser.processor.model.text.TextPositionSequence;
import lombok.experimental.UtilityClass;
import org.apache.pdfbox.cos.COSName;
import org.apache.pdfbox.pdmodel.documentinterchange.markedcontent.PDMarkedContent;
import org.apache.pdfbox.text.TextPosition;
import java.awt.geom.Rectangle2D;
import java.util.Collection;
import java.util.Collections;
@@ -7,22 +14,12 @@ import java.util.List;
import java.util.Map;
import java.util.stream.Collectors;
import org.apache.pdfbox.cos.COSName;
import org.apache.pdfbox.pdmodel.documentinterchange.markedcontent.PDMarkedContent;
import org.apache.pdfbox.text.TextPosition;
import com.knecon.fforesight.service.layoutparser.processor.model.text.TextPageBlock;
import com.knecon.fforesight.service.layoutparser.processor.model.text.TextPositionSequence;
import lombok.experimental.UtilityClass;
@UtilityClass
public class MarkedContentUtils {
public static final String HEADER = "Header";
public static final String FOOTER = "Footer";
public List<Rectangle2D> getMarkedContentBboxPerLine(List<PDMarkedContent> markedContents, String subtype) {
if (markedContents == null) {
@@ -34,8 +31,7 @@ public class MarkedContentUtils {
.filter(m -> m.getProperties() != null)
.filter(m -> m.getProperties().getItem("Subtype") != null)
.filter(m -> ((COSName) m.getProperties().getItem("Subtype")).getName().equals(subtype))
.map(PDMarkedContent::getContents)
.flatMap(Collection::stream)
.map(PDMarkedContent::getContents).flatMap(Collection::stream)
.filter(t -> t instanceof TextPosition)
.map(t -> (TextPosition) t)
.filter(t -> !t.getUnicode().equals(" "))
@@ -45,19 +41,16 @@ public class MarkedContentUtils {
return Collections.emptyList();
}
return markedContentByYPosition.values()
.stream()
.map(textPositions -> new TextPositionSequence(textPositions.stream().toList(), 0, true).getRectangle())
.map(t -> new Rectangle2D.Float(t.getTopLeft().getX(), t.getTopLeft().getY() - Math.abs(t.getHeight()), t.getWidth(), Math.abs(t.getHeight())))
.collect(Collectors.toList());
return markedContentByYPosition.values().stream()
.map(textPositions -> new TextPositionSequence(textPositions.stream()
.toList(), 0, true)
.getRectangle())
.map(t -> new Rectangle2D.Float(t.getTopLeft().getX(), t.getTopLeft().getY() - Math.abs(t.getHeight()), t.getWidth(), Math.abs(t.getHeight()))).collect(Collectors.toList());
}
public boolean intersects(TextPageBlock textBlock, Map<String, List<Rectangle2D>> markedContentBboxPerType, String type) {
return markedContentBboxPerType.get(type) != null && markedContentBboxPerType.get(type)
.stream()
.anyMatch(rectangle -> rectangle.intersects(textBlock.getPdfMinX(), textBlock.getPdfMinY(), textBlock.getWidth(), textBlock.getHeight()));
return markedContentBboxPerType.get(type) != null && markedContentBboxPerType.get(type).stream().anyMatch(rectangle -> rectangle.intersects(textBlock.getPdfMinX(), textBlock.getPdfMinY(), textBlock.getWidth(), textBlock.getHeight()));
}
}
@@ -19,9 +19,10 @@ public final class PositionUtils {
double threshold = textBlock.getMostPopularWordHeight() * 3;
if (textBlock.getPdfMinX() + threshold > btf.getTopLeft().getX() && textBlock.getPdfMaxX() - threshold < btf.getTopLeft()
.getX() + btf.getWidth() && textBlock.getPdfMinY() + threshold > btf.getTopLeft().getY() && textBlock.getPdfMaxY() - threshold < btf.getTopLeft()
.getY() + btf.getHeight()) {
if (textBlock.getPdfMinX() + threshold > btf.getTopLeft().getX()
&& textBlock.getPdfMaxX() - threshold < btf.getTopLeft().getX() + btf.getWidth()
&& textBlock.getPdfMinY() + threshold > btf.getTopLeft().getY()
&& textBlock.getPdfMaxY() - threshold < btf.getTopLeft().getY() + btf.getHeight()) {
return true;
} else {
return false;
@@ -41,14 +41,11 @@ public class RectangleTransformations {
return atomicTextBlocks.stream().flatMap(atomicTextBlock -> atomicTextBlock.getPositions().stream()).collect(new Rectangle2DBBoxCollector());
}
public static Collector<Rectangle2D, Rectangle2DBBoxCollector.BBox, Rectangle2D> collectBBox() {
return new Rectangle2DBBoxCollector();
}
public static PDRectangle toPDRectangleBBox(List<Rectangle> rectangles) {
Rectangle2D rectangle2D = RectangleTransformations.rectangleBBox(rectangles);
@@ -73,7 +70,6 @@ public class RectangleTransformations {
return format("%f,%f,%f,%f", rectangle2D.getX(), rectangle2D.getY(), rectangle2D.getWidth(), rectangle2D.getHeight());
}
public static Rectangle2D rectangleBBox(List<Rectangle> rectangles) {
return rectangles.stream().map(RectangleTransformations::toRectangle2D).collect(new Rectangle2DBBoxCollector());
@@ -88,7 +84,6 @@ public class RectangleTransformations {
-redactionLogRectangle.getHeight());
}
public static Rectangle2D toRectangle2D(PDRectangle rectangle) {
return new Rectangle2D.Double(rectangle.getLowerLeftX(), rectangle.getLowerLeftY(), rectangle.getWidth(), rectangle.getHeight());
@@ -30,8 +30,6 @@ public class TableMergingUtility {
if (consecutiveTable.getColCount() == originalTablePageBlock.getColCount() && !hasTableHeader(consecutiveTable) && outerBoundaryAlignsX(originalTablePageBlock,
consecutiveTable)) {
consecutiveTablesWithSameColCountAndHeaders.add(consecutiveTable);
} else {
break;
}
}
return Stream.concat(Stream.of(originalTablePageBlock), consecutiveTablesWithSameColCountAndHeaders.stream()).toList();
@@ -3,6 +3,7 @@ package com.knecon.fforesight.service.layoutparser.processor.utils;
import java.util.List;
import java.util.stream.Collectors;
import com.knecon.fforesight.service.layoutparser.processor.model.text.TextPageBlock;
import com.knecon.fforesight.service.layoutparser.processor.model.text.TextPositionSequence;
@@ -28,13 +28,15 @@ import com.knecon.fforesight.service.layoutparser.processor.model.text.TextPosit
*
* @author Ben Litchfield
*/
public class TextPositionSequenceComparator implements Comparator<TextPositionSequence> {
public class TextPositionSequenceComparator implements Comparator<TextPositionSequence>
{
@Override
public int compare(TextPositionSequence pos1, TextPositionSequence pos2) {
public int compare(TextPositionSequence pos1, TextPositionSequence pos2)
{
// only compare text that is in the same direction
int cmp1 = Float.compare(pos1.getDir().getDegrees(), pos2.getDir().getDegrees());
if (cmp1 != 0) {
if (cmp1 != 0)
{
return cmp1;
}
@@ -52,13 +54,19 @@ public class TextPositionSequenceComparator implements Comparator<TextPositionSe
float yDifference = Math.abs(pos1YBottom - pos2YBottom);
// we will do a simple tolerance comparison
if (yDifference < .1 || pos2YBottom >= pos1YTop && pos2YBottom <= pos1YBottom || pos1YBottom >= pos2YTop && pos1YBottom <= pos2YBottom) {
if (yDifference < .1 ||
pos2YBottom >= pos1YTop && pos2YBottom <= pos1YBottom ||
pos1YBottom >= pos2YTop && pos1YBottom <= pos2YBottom)
{
return Float.compare(x1, x2);
} else if (pos1YBottom < pos2YBottom) {
}
else if (pos1YBottom < pos2YBottom)
{
return -1;
} else {
}
else
{
return 1;
}
}
}
@@ -3,40 +3,53 @@ import org.springframework.boot.gradle.tasks.bundling.BootBuildImage
plugins {
application
id("com.knecon.fforesight.java-conventions")
id("org.springframework.boot") version "3.1.3"
id("org.springframework.boot") version "3.1.5"
id("io.spring.dependency-management") version "1.1.3"
id("org.sonarqube") version "4.3.0.3225"
id("io.freefair.lombok") version "8.2.2"
id("io.freefair.lombok") version "8.4"
// id("org.graalvm.buildtools.native") version "0.9.23"
}
description = "layoutparser-service-server"
configurations {
all {
exclude(group = "commons-logging", module = "commons-logging")
exclude(group = "org.springframework.boot", module = "spring-boot-starter-log4j2")
exclude(group = "com.iqser.red.commons", module = "logging-commons")
}
}
val jacksonVersion = "2.15.2"
val pdfBoxVersion = "3.0.0"
val springBootStarterVersion = "3.1.5"
dependencies {
implementation(project(":layoutparser-service-processor"))
implementation(project(":layoutparser-service-internal-api"))
implementation("com.iqser.red.commons:storage-commons:2.45.0")
implementation("com.knecon.fforesight:tenant-commons:0.14.0")
implementation("org.springframework.boot:spring-boot-starter-actuator:3.1.3")
implementation("com.knecon.fforesight:tenant-commons:0.21.0")
implementation("com.knecon.fforesight:tracing-commons:0.5.0")
implementation("org.springframework.boot:spring-boot-starter-actuator:${springBootStarterVersion}")
implementation("org.springframework.boot:spring-boot-starter-amqp:${springBootStarterVersion}")
implementation("com.amazonaws:aws-java-sdk-s3:1.12.536")
implementation("org.springframework.boot:spring-boot-starter-amqp:3.1.3")
implementation("org.springframework.cloud:spring-cloud-starter-openfeign:4.0.4")
implementation("net.logstash.logback:logstash-logback-encoder:7.4")
// for integration testing only
testImplementation(project(":viewer-doc-processor"))
testImplementation(project(":layoutparser-service-internal-api"))
testImplementation("org.springframework.boot:spring-boot-starter-amqp:3.1.3")
testImplementation("org.springframework.boot:spring-boot-starter-amqp:${springBootStarterVersion}")
testImplementation("org.springframework.boot:spring-boot-starter-test:${springBootStarterVersion}")
testImplementation("com.iqser.red.service:persistence-service-shared-api-v1:2.144.0")
testImplementation("com.iqser.red.commons:jackson-commons:1.3.0")
testImplementation("com.fasterxml.jackson.module:jackson-module-afterburner:${jacksonVersion}")
testImplementation("com.fasterxml.jackson.datatype:jackson-datatype-jsr310:${jacksonVersion}")
testImplementation("org.apache.pdfbox:pdfbox:${pdfBoxVersion}")
testImplementation("org.apache.pdfbox:pdfbox-tools:${pdfBoxVersion}")
testImplementation("org.springframework.boot:spring-boot-starter-test:3.1.3")
}
/*
@@ -5,6 +5,7 @@ import org.springframework.boot.actuate.autoconfigure.security.servlet.Managemen
import org.springframework.boot.autoconfigure.ImportAutoConfiguration;
import org.springframework.boot.autoconfigure.SpringBootApplication;
import org.springframework.boot.autoconfigure.security.servlet.SecurityAutoConfiguration;
import org.springframework.context.annotation.Bean;
import org.springframework.context.annotation.Import;
import com.amazonaws.services.s3.model.metrics.MetricsConfiguration;
@@ -13,6 +14,9 @@ import com.knecon.fforesight.service.layoutparser.processor.LayoutParsingService
import com.knecon.fforesight.service.layoutparser.server.queue.MessagingConfiguration;
import com.knecon.fforesight.tenantcommons.MultiTenancyAutoConfiguration;
import io.micrometer.observation.ObservationRegistry;
import io.micrometer.observation.aop.ObservedAspect;
@ImportAutoConfiguration({MultiTenancyAutoConfiguration.class})
@Import({MetricsConfiguration.class, StorageAutoConfiguration.class, LayoutParsingServiceProcessorConfiguration.class, MessagingConfiguration.class})
@SpringBootApplication(exclude = {SecurityAutoConfiguration.class, ManagementWebSecurityAutoConfiguration.class})
@@ -23,4 +27,11 @@ public class Application {
SpringApplication.run(Application.class, args);
}
@Bean
public ObservedAspect observedAspect(ObservationRegistry observationRegistry) {
return new ObservedAspect(observationRegistry);
}
}
@@ -24,8 +24,7 @@ public class MessagingConfiguration {
@Bean
public Queue layoutparsingResponseQueue() {
return QueueBuilder.durable(LayoutParsingQueueNames.LAYOUT_PARSING_FINISHED_EVENT_QUEUE)//
.withArgument("x-dead-letter-exchange", "").withArgument("x-dead-letter-routing-key", LayoutParsingQueueNames.LAYOUT_PARSING_DLQ).build();
return QueueBuilder.durable(LayoutParsingQueueNames.LAYOUT_PARSING_FINISHED_EVENT_QUEUE).build();
}
@@ -5,10 +5,19 @@ tenant-user-management-service.url: "http://tenant-user-management-service:8080/
fforesight.tenants.remote: true
logging.pattern.level: "%5p [${spring.application.name},%X{traceId:-},%X{spanId:-}]"
logging.type: ${LOGGING_TYPE:CONSOLE}
kubernetes.namespace: ${NAMESPACE:default}
project.version: 1.0-SNAPSHOT
server:
port: 8080
spring:
application:
name: layoutparser-service
main:
allow-circular-references: true # FIXME
rabbitmq:
@@ -32,6 +41,13 @@ management:
prometheus.enabled: ${monitoring.enabled:false}
health.enabled: true
endpoints.web.exposure.include: prometheus, health
tracing:
enabled: ${TRACING_ENABLED:false}
sampling:
probability: ${TRACING_PROBABILITY:1.0}
otlp:
tracing:
endpoint: ${OTLP_ENDPOINT:http://otel-collector-opentelemetry-collector.otel-collector:4318/v1/traces}
storage:
@@ -0,0 +1,17 @@
<configuration>
<springProperty scope="configuration" name="logType" source="logging.type"/>
<springProperty scope="context" name="application.name" source="spring.application.name"/>
<springProperty scope="context" name="version" source="project.version"/>
<include resource="org/springframework/boot/logging/logback/defaults.xml"/>
<include resource="org/springframework/boot/logging/logback/console-appender.xml"/>
<appender name="JSON" class="ch.qos.logback.core.ConsoleAppender">
<encoder class="net.logstash.logback.encoder.LogstashEncoder"/>
</appender>
<root level="INFO">
<appender-ref ref="${logType}"/>
</root>
</configuration>
@@ -46,12 +46,11 @@ public class BdrJsonBuildTest extends AbstractTest {
@SneakyThrows
protected Document buildGraph(File file) {
try (PDDocument pdDocument = Loader.loadPDF(file)) {
return DocumentGraphFactory.buildDocumentGraph(layoutParsingPipeline.parseLayout(LayoutParsingType.TAAS,
pdDocument,
new ImageServiceResponse(),
new TableServiceResponse()));
}
return DocumentGraphFactory.buildDocumentGraph(layoutParsingPipeline.parseLayout(LayoutParsingType.TAAS,
file,
new ImageServiceResponse(),
new TableServiceResponse(),
file.toString()));
}
@@ -6,7 +6,6 @@ import java.util.List;
import java.util.Set;
import java.util.stream.Collectors;
import org.apache.pdfbox.Loader;
import org.assertj.core.api.Assertions;
import org.junit.jupiter.api.Test;
import org.junit.jupiter.api.extension.ExtendWith;
@@ -96,9 +95,10 @@ public class HeadlinesGoldStandardIntegrationTest {
goldStandardLog.getRedactionLogEntry().forEach(e -> goldStandardHeadlines.add(new Headline(e.getPositions().get(0).getPage(), e.getValue())));
Document documentGraph = DocumentGraphFactory.buildDocumentGraph(layoutParsingPipeline.parseLayout(LayoutParsingType.REDACT_MANAGER,
Loader.loadPDF(pdfFileResource.getFile()),
pdfFileResource.getFile(),
new ImageServiceResponse(),
new TableServiceResponse()));
new TableServiceResponse(),
filePath));
var foundHeadlines = documentGraph.streamAllSubNodes()
.map(SemanticNode::getHeadline)
@@ -148,6 +148,7 @@ public class HeadlinesGoldStandardIntegrationTest {
@EqualsAndHashCode
@AllArgsConstructor
@ToString
@SuppressWarnings("PMD.AvoidFieldNameMatchingTypeName")
private class Headline {
private int page;
@@ -25,8 +25,8 @@ public class LayoutparserEnd2EndTest extends AbstractTest {
@SneakyThrows
public void testLayoutParserEndToEnd() {
prepareStorage("files/bdr/btd_19_053_1905391.pdf");
LayoutParsingRequest layoutParsingRequest = buildDefaultLayoutParsingRequest(LayoutParsingType.TAAS);
prepareStorage("files/bdr/Wie weiter bei Kristeneinrichtungen.pdf");
LayoutParsingRequest layoutParsingRequest = buildDefaultLayoutParsingRequest(LayoutParsingType.REDACT_MANAGER);
LayoutParsingFinishedEvent finishedEvent = layoutParsingPipeline.parseLayoutAndSaveFilesToStorage(layoutParsingRequest);
Arrays.stream(finishedEvent.message().split("\n")).forEach(log::info);
}
@@ -6,6 +6,7 @@ import java.nio.file.Files;
import java.nio.file.Path;
import java.util.List;
import org.junit.jupiter.api.Disabled;
import org.junit.jupiter.api.Test;
import org.springframework.core.io.ClassPathResource;
@@ -19,6 +20,7 @@ import lombok.SneakyThrows;
public class DocumentDataTests extends BuildDocumentTest {
@Test
@Disabled // This test takes waaaaaay too long, it's ridiculous
@SneakyThrows
public void createDocumentDataForAllFiles() {
@@ -5,7 +5,6 @@ import java.io.FileOutputStream;
import java.nio.file.Files;
import java.nio.file.Path;
import org.apache.pdfbox.Loader;
import org.junit.jupiter.api.Disabled;
import org.junit.jupiter.api.Test;
import org.springframework.core.io.ClassPathResource;
@@ -56,9 +55,10 @@ public class DocumentGraphJsonWritingTest extends BuildDocumentTest {
private void writeJsons(Path filename) {
Document documentGraph = DocumentGraphFactory.buildDocumentGraph(layoutParsingPipeline.parseLayout(LayoutParsingType.REDACT_MANAGER,
Loader.loadPDF(filename.toFile()),
filename.toFile(),
new ImageServiceResponse(),
new TableServiceResponse()));
new TableServiceResponse(),
filename.toFile().toString()));
DocumentData documentData = DocumentDataMapper.toDocumentData(documentGraph);
ObjectMapper mapper = ObjectMapperFactory.create();
@@ -7,6 +7,7 @@ import java.util.HashMap;
import java.util.List;
import java.util.Map;
import lombok.SneakyThrows;
import org.apache.pdfbox.Loader;
import org.apache.pdfbox.cos.COSArray;
import org.apache.pdfbox.cos.COSBase;
@@ -24,24 +25,18 @@ import org.junit.jupiter.api.Disabled;
import org.junit.jupiter.api.Test;
import org.springframework.core.io.ClassPathResource;
import lombok.SneakyThrows;
/**
* @author mkl
*/
@Disabled
public class ExtractMarkedContentTest {
final static File RESULT_FOLDER = new File("target/test-outputs", "extract");
@BeforeEach
public void setUpBeforeClass() throws Exception {
RESULT_FOLDER.mkdirs();
}
/**
* <a href="https://stackoverflow.com/questions/54956720/how-to-replace-a-space-with-a-word-while-extract-the-data-from-pdf-using-pdfbox">
* How to replace a space with a word while extract the data from PDF using PDFBox
@@ -57,7 +52,6 @@ public class ExtractMarkedContentTest {
@Test
@SneakyThrows
public void testExtractTestWPhromma() throws IOException {
System.out.printf("\n\n===\n%s\n===\n", "testWPhromma.pdf");
try (PDDocument document = Loader.loadPDF(new ClassPathResource("files/bdr/Drucksache_19_9865.pdf").getFile())) {
@@ -80,7 +74,6 @@ public class ExtractMarkedContentTest {
}
}
/**
* <a href="https://stackoverflow.com/questions/59192443/get-tags-related-bboxs-even-though-there-is-no-attributes-a-in-document-cata">
* Get tag's related BBox's even though there is no attributes (/A in document catalog structure) related to Layout in PDFBox?
@@ -95,10 +88,9 @@ public class ExtractMarkedContentTest {
*/
@Test
public void testExtractResMultipage() throws IOException {
System.out.printf("\n\n===\n%s\n===\n", "res_multipage.pdf");
try (PDDocument document = Loader.loadPDF(new ClassPathResource("files/bdr/Drucksache_19_9865.pdf").getFile())) {
try(PDDocument document = Loader.loadPDF(new ClassPathResource("files/bdr/Drucksache_19_9865.pdf").getFile())) {
Map<PDPage, Map<Integer, PDMarkedContent>> markedContents = new HashMap<>();
@@ -119,7 +111,6 @@ public class ExtractMarkedContentTest {
}
}
/**
* <a href="https://issues.apache.org/jira/browse/PDFBOX-5613">
* PDFBOX-5613 - uncorrent paragraph split
@@ -134,7 +125,6 @@ public class ExtractMarkedContentTest {
*/
@Test
public void testExtractDailyReport() throws IOException {
System.out.printf("\n\n===\n%s\n===\n", "Daily Report.pdf");
try (PDDocument document = Loader.loadPDF(new ClassPathResource("files/bdr/Drucksache_19_9865.pdf").getFile())) {
@@ -157,12 +147,10 @@ public class ExtractMarkedContentTest {
}
}
/**
* @see #testExtractTestWPhromma()
*/
void showStructure(PDStructureNode node, Map<PDPage, Map<Integer, PDMarkedContent>> markedContents) {
String structType = null;
PDPage page = null;
if (node instanceof PDStructureElement) {
@@ -178,7 +166,7 @@ public class ExtractMarkedContentTest {
if (base instanceof COSDictionary) {
showStructure(PDStructureNode.create((COSDictionary) base), markedContents);
} else if (base instanceof COSNumber) {
showContent(((COSNumber) base).intValue(), theseMarkedContents);
showContent(((COSNumber)base).intValue(), theseMarkedContents);
} else {
System.out.printf("?%s\n", base);
}
@@ -186,7 +174,7 @@ public class ExtractMarkedContentTest {
} else if (object instanceof PDStructureNode) {
showStructure((PDStructureNode) object, markedContents);
} else if (object instanceof Integer) {
showContent((Integer) object, theseMarkedContents);
showContent((Integer)object, theseMarkedContents);
} else {
System.out.printf("?%s\n", object);
}
@@ -195,24 +183,21 @@ public class ExtractMarkedContentTest {
System.out.printf("</%s>\n", structType);
}
/**
* @see #showStructure(PDStructureNode, Map)
* @see #testExtractTestWPhromma()
*/
void showContent(int mcid, Map<Integer, PDMarkedContent> theseMarkedContents) {
PDMarkedContent markedContent = theseMarkedContents != null ? theseMarkedContents.get(mcid) : null;
List<Object> contents = markedContent != null ? markedContent.getContents() : Collections.emptyList();
StringBuilder textContent = new StringBuilder();
StringBuilder textContent = new StringBuilder();
for (Object object : contents) {
if (object instanceof TextPosition) {
textContent.append(((TextPosition) object).getUnicode());
textContent.append(((TextPosition)object).getUnicode());
} else {
textContent.append("?" + object);
}
}
System.out.printf("%s\n", textContent);
}
}
@@ -1,63 +1,68 @@
package com.knecon.fforesight.service.layoutparser.server.graph;
import java.io.FileOutputStream;
import java.io.File;
import java.nio.file.Path;
import org.apache.pdfbox.Loader;
import org.apache.pdfbox.pdmodel.PDDocument;
import org.junit.jupiter.api.Disabled;
import org.junit.jupiter.api.Test;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.core.io.ClassPathResource;
import com.iqser.red.commons.jackson.ObjectMapperFactory;
import com.knecon.fforesight.service.layoutparser.internal.api.queue.LayoutParsingType;
import com.knecon.fforesight.service.layoutparser.processor.model.ClassificationDocument;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Document;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.image.ImageServiceResponse;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.TableServiceResponse;
import com.knecon.fforesight.service.layoutparser.processor.services.SectionsBuilderService;
import com.knecon.fforesight.service.layoutparser.processor.services.classification.RedactManagerClassificationService;
import com.knecon.fforesight.service.layoutparser.processor.services.factory.DocumentGraphFactory;
import com.knecon.fforesight.service.layoutparser.processor.services.visualization.LayoutGridService;
import com.knecon.fforesight.service.layoutparser.processor.services.visualization.ViewerDocumentService;
import com.knecon.fforesight.service.layoutparser.server.utils.BuildDocumentTest;
import com.knecon.fforesight.service.viewerdoc.service.ViewerDocumentService;
import lombok.SneakyThrows;
public class ViewerDocumentTest extends BuildDocumentTest {
@Autowired
private SectionsBuilderService sectionsBuilderService;
@Autowired
private RedactManagerClassificationService redactManagerClassificationService;
@Test
@SneakyThrows
public void testViewerDocument() {
String fileName = "files/bdr/notMergedParagraphs.pdf";
String fileName = "files/S-Metolachlor_RAR_01_Volume_1_2018-09-06.pdf";
String tmpFileName = "/tmp/" + Path.of(fileName).getFileName() + "_VIEWER.pdf";
LayoutGridService layoutGridService = new LayoutGridService();
ViewerDocumentService viewerDocumentService = new ViewerDocumentService(layoutGridService);
Document document = buildGraph(fileName, LayoutParsingType.TAAS);
try (var pdDocument = Loader.loadPDF(new ClassPathResource(fileName).getFile()); var out = new FileOutputStream(tmpFileName)) {
viewerDocumentService.createViewerDocument(pdDocument, document, out, true);
}
var documentFile = new ClassPathResource(fileName).getFile();
ViewerDocumentService viewerDocumentService = new ViewerDocumentService(null);
LayoutGridService layoutGridService = new LayoutGridService(viewerDocumentService);
Document document = buildGraph(fileName, LayoutParsingType.REDACT_MANAGER);
long start = System.currentTimeMillis();
layoutGridService.addLayoutGrid(documentFile, document, new File(tmpFileName), true);
System.out.printf("Total time: %.2fs%n", ((float) (System.currentTimeMillis() - start)) / 1000);
}
public ClassificationDocument buildClassificationDocument(PDDocument originDocument) {
@Test
@Disabled
@SneakyThrows
public void testViewerDocumentWithTables() {
ClassificationDocument classificationDocument = layoutParsingPipeline.parseLayout(LayoutParsingType.REDACT_MANAGER,
originDocument,
new ImageServiceResponse(),
new TableServiceResponse());
String fileName = "files/cv_tables/brokenTablesOnOcr_ocred.pdf";
String tableFileName = "files/cv_tables/brokenTablesOnOcr_ocred.TABLES.json";
String tmpFileName = "/tmp/" + Path.of(fileName).getFileName() + "_VIEWER.pdf";
redactManagerClassificationService.classifyDocument(classificationDocument);
var mapper = ObjectMapperFactory.create();
var tableResponse = mapper.readValue(new ClassPathResource(tableFileName).getInputStream(), TableServiceResponse.class);
var documentFile = new ClassPathResource(fileName).getFile();
sectionsBuilderService.buildSections(classificationDocument);
var classificationDocument = layoutParsingPipeline.parseLayout(LayoutParsingType.DOCUMINE,
documentFile,
new ImageServiceResponse(),
tableResponse,
Path.of(fileName).getFileName().toFile().toString());
ViewerDocumentService viewerDocumentService = new ViewerDocumentService(null);
LayoutGridService layoutGridService = new LayoutGridService(viewerDocumentService);
Document document = DocumentGraphFactory.buildDocumentGraph(classificationDocument);
return classificationDocument;
layoutGridService.addLayoutGrid(documentFile, document, new File(tmpFileName), true);
}
}
@@ -9,6 +9,7 @@ import org.apache.pdfbox.util.Matrix;
import org.junit.jupiter.api.Test;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.iqser.red.storage.commons.properties.StorageProperties;
import com.iqser.red.storage.commons.service.ObjectSerializer;
import com.knecon.fforesight.service.layoutparser.processor.model.text.TextDirection;
import com.knecon.fforesight.service.layoutparser.processor.model.text.TextPositionSequence;
@@ -3,6 +3,7 @@ package com.knecon.fforesight.service.layoutparser.server.segmentation;
import static org.assertj.core.api.Assertions.assertThat;
import java.awt.geom.Rectangle2D;
import java.io.File;
import java.io.FileOutputStream;
import java.io.IOException;
import java.nio.file.Path;
@@ -15,8 +16,6 @@ import java.util.Locale;
import java.util.Map;
import java.util.stream.Collectors;
import org.apache.pdfbox.Loader;
import org.apache.pdfbox.pdmodel.PDDocument;
import org.junit.jupiter.api.Disabled;
import org.junit.jupiter.api.Test;
import org.springframework.beans.factory.annotation.Autowired;
@@ -30,8 +29,6 @@ import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Im
import com.knecon.fforesight.service.layoutparser.processor.model.image.ClassifiedImage;
import com.knecon.fforesight.service.layoutparser.processor.model.table.Cell;
import com.knecon.fforesight.service.layoutparser.processor.model.table.TablePageBlock;
import com.knecon.fforesight.service.layoutparser.processor.python_api.adapter.CvTableParsingAdapter;
import com.knecon.fforesight.service.layoutparser.processor.python_api.adapter.ImageServiceResponseAdapter;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.image.ImageServiceResponse;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.TableServiceResponse;
import com.knecon.fforesight.service.layoutparser.processor.services.SectionsBuilderService;
@@ -51,23 +48,18 @@ public class PdfSegmentationServiceTest extends AbstractTest {
@Autowired
private RedactManagerClassificationService redactManagerClassificationService;
@Autowired
private CvTableParsingAdapter cvTableParsingAdapter;
@Autowired
private ImageServiceResponseAdapter imageServiceResponseAdapter;
@Autowired
private SectionsBuilderService sectionsBuilderService;
@SneakyThrows
public ClassificationDocument buildClassificationDocument(PDDocument originDocument, TableServiceResponse tableServiceResponse) {
public ClassificationDocument buildClassificationDocument(File originDocument, TableServiceResponse tableServiceResponse) {
ClassificationDocument classificationDocument = layoutParsingPipeline.parseLayout(LayoutParsingType.REDACT_MANAGER,
originDocument,
new ImageServiceResponse(),
tableServiceResponse);
originDocument,
new ImageServiceResponse(),
tableServiceResponse,
"document");
redactManagerClassificationService.classifyDocument(classificationDocument);
@@ -78,7 +70,7 @@ public class PdfSegmentationServiceTest extends AbstractTest {
@SneakyThrows
public ClassificationDocument buildClassificationDocument(PDDocument originDocument) {
public ClassificationDocument buildClassificationDocument(File originDocument) {
return buildClassificationDocument(originDocument, new TableServiceResponse());
}
@@ -87,11 +79,11 @@ public class PdfSegmentationServiceTest extends AbstractTest {
@Test
public void tablesToHtmlDebugger() throws IOException {
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/A20622A izRMS (CZ) fRR Part B9_Page185.pdf");
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/T5 VV-640252-Page16.pdf");
ClassificationDocument document = buildClassificationDocument(Loader.loadPDF(pdfFileResource.getFile()));
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
toHtml(document, "/tmp/A20622A izRMS (CZ) fRR Part B9_Page185.html");
toHtml(document, "/tmp/T5.html");
}
@@ -103,12 +95,13 @@ public class PdfSegmentationServiceTest extends AbstractTest {
ClassPathResource cvTablesResource = new ClassPathResource("files/cv_tables/ScanRotationBorder.TABLES.json");
var tableServiceResponse = objectMapper.readValue(cvTablesResource.getInputStream(), TableServiceResponse.class);
ClassificationDocument document = buildClassificationDocument(Loader.loadPDF(pdfFileResource.getFile()), tableServiceResponse);
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile(), tableServiceResponse);
toHtml(document, "/tmp/ScanRotationBorder.html");
}
@Disabled
@Test
public void testScanRotationBorderIsIgnored() throws IOException {
@@ -116,9 +109,17 @@ public class PdfSegmentationServiceTest extends AbstractTest {
ClassPathResource cvTablesResource = new ClassPathResource("files/cv_tables/ScanRotationBorder.TABLES.json");
var tableServiceResponse = objectMapper.readValue(cvTablesResource.getInputStream(), TableServiceResponse.class);
ClassificationDocument document = buildClassificationDocument(Loader.loadPDF(pdfFileResource.getFile()), tableServiceResponse);
assertThat(document.getSections().stream().flatMap(paragraph -> paragraph.getTables().stream()).collect(Collectors.toList())).isNotEmpty();
var tables = document.getSections().stream().flatMap(paragraph -> paragraph.getTables().stream()).toList();
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile(), tableServiceResponse);
assertThat(document.getSections()
.stream()
.flatMap(paragraph -> paragraph.getTables()
.stream())
.collect(Collectors.toList())).isNotEmpty();
var tables = document.getSections()
.stream()
.flatMap(paragraph -> paragraph.getTables()
.stream())
.toList();
// Quality of the table parsing is not good, because the file is rotated at scanning.
// We only asset that the table border is not the page border.
@@ -140,12 +141,12 @@ public class PdfSegmentationServiceTest extends AbstractTest {
imageServiceResponse.getData()
.forEach(imageMetadata -> images.computeIfAbsent(imageMetadata.getPosition().getPageNumber(), x -> new ArrayList<>())
.add(new ClassifiedImage(new Rectangle2D.Double(imageMetadata.getPosition().getX1(),
imageMetadata.getPosition().getY1(),
imageMetadata.getGeometry().getWidth(),
imageMetadata.getGeometry().getHeight()),
ImageType.valueOf(imageMetadata.getClassification().getLabel().toUpperCase(Locale.ROOT)),
imageMetadata.isAlpha(),
imageMetadata.getPosition().getPageNumber())));
imageMetadata.getPosition().getY1(),
imageMetadata.getGeometry().getWidth(),
imageMetadata.getGeometry().getHeight()),
ImageType.valueOf(imageMetadata.getClassification().getLabel().toUpperCase(Locale.ROOT)),
imageMetadata.isAlpha(),
imageMetadata.getPosition().getPageNumber())));
System.out.println("object");
}
@@ -156,12 +157,23 @@ public class PdfSegmentationServiceTest extends AbstractTest {
ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Spanning Cells.pdf");
ClassificationDocument document = buildClassificationDocument(Loader.loadPDF(pdfFileResource.getFile()));
assertThat(document.getSections().stream().flatMap(paragraph -> paragraph.getTables().stream()).collect(Collectors.toList())).isNotEmpty();
TablePageBlock table = document.getSections().stream().flatMap(paragraph -> paragraph.getTables().stream()).collect(Collectors.toList()).get(0);
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
assertThat(document.getSections()
.stream()
.flatMap(paragraph -> paragraph.getTables()
.stream())
.collect(Collectors.toList())).isNotEmpty();
TablePageBlock table = document.getSections()
.stream()
.flatMap(paragraph -> paragraph.getTables()
.stream())
.toList()
.get(0);
assertThat(table.getColCount()).isEqualTo(6);
assertThat(table.getRowCount()).isEqualTo(13);
assertThat(table.getRows().stream().mapToInt(List::size).sum()).isEqualTo(6 * 13);
assertThat(table.getRows()
.stream()
.mapToInt(List::size).sum()).isEqualTo(6 * 13);
}
@@ -170,16 +182,38 @@ public class PdfSegmentationServiceTest extends AbstractTest {
ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Merge Table.pdf");
ClassificationDocument document = buildClassificationDocument(Loader.loadPDF(pdfFileResource.getFile()));
assertThat(document.getSections().stream().flatMap(paragraph -> paragraph.getTables().stream()).collect(Collectors.toList())).isNotEmpty();
TablePageBlock firstTable = document.getSections().stream().flatMap(paragraph -> paragraph.getTables().stream()).collect(Collectors.toList()).get(0);
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
assertThat(document.getSections()
.stream()
.flatMap(paragraph -> paragraph.getTables()
.stream())
.collect(Collectors.toList())).isNotEmpty();
TablePageBlock firstTable = document.getSections()
.stream()
.flatMap(paragraph -> paragraph.getTables()
.stream())
.toList()
.get(0);
assertThat(firstTable.getColCount()).isEqualTo(8);
assertThat(firstTable.getRowCount()).isEqualTo(1);
TablePageBlock secondTable = document.getSections().stream().flatMap(paragraph -> paragraph.getTables().stream()).collect(Collectors.toList()).get(1);
TablePageBlock secondTable = document.getSections()
.stream()
.flatMap(paragraph -> paragraph.getTables()
.stream())
.toList()
.get(1);
assertThat(secondTable.getColCount()).isEqualTo(8);
assertThat(secondTable.getRowCount()).isEqualTo(2);
List<List<Cell>> firstTableHeaderCells = firstTable.getRows().get(0).stream().map(Collections::singletonList).collect(Collectors.toList());
assertThat(secondTable.getRows().stream().allMatch(row -> row.stream().map(Cell::getHeaderCells).toList().equals(firstTableHeaderCells))).isTrue();
List<List<Cell>> firstTableHeaderCells = firstTable.getRows()
.get(0)
.stream()
.map(Collections::singletonList)
.collect(Collectors.toList());
assertThat(secondTable.getRows()
.stream()
.allMatch(row -> row.stream()
.map(Cell::getHeaderCells)
.toList().equals(firstTableHeaderCells))).isTrue();
}
@@ -188,16 +222,38 @@ public class PdfSegmentationServiceTest extends AbstractTest {
ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Merge Multi Page Table.pdf");
ClassificationDocument document = buildClassificationDocument(Loader.loadPDF(pdfFileResource.getFile()));
assertThat(document.getSections().stream().flatMap(paragraph -> paragraph.getTables().stream()).collect(Collectors.toList())).isNotEmpty();
TablePageBlock firstTable = document.getSections().stream().flatMap(paragraph -> paragraph.getTables().stream()).collect(Collectors.toList()).get(0);
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
assertThat(document.getSections()
.stream()
.flatMap(paragraph -> paragraph.getTables()
.stream())
.collect(Collectors.toList())).isNotEmpty();
TablePageBlock firstTable = document.getSections()
.stream()
.flatMap(paragraph -> paragraph.getTables()
.stream())
.toList()
.get(0);
assertThat(firstTable.getColCount()).isEqualTo(9);
assertThat(firstTable.getRowCount()).isEqualTo(5);
TablePageBlock secondTable = document.getSections().stream().flatMap(paragraph -> paragraph.getTables().stream()).collect(Collectors.toList()).get(1);
TablePageBlock secondTable = document.getSections()
.stream()
.flatMap(paragraph -> paragraph.getTables()
.stream())
.toList()
.get(1);
assertThat(secondTable.getColCount()).isEqualTo(9);
assertThat(secondTable.getRowCount()).isEqualTo(6);
List<List<Cell>> firstTableHeaderCells = firstTable.getRows().get(firstTable.getRowCount() - 1).stream().map(Cell::getHeaderCells).collect(Collectors.toList());
assertThat(secondTable.getRows().stream().allMatch(row -> row.stream().map(Cell::getHeaderCells).toList().equals(firstTableHeaderCells))).isTrue();
List<List<Cell>> firstTableHeaderCells = firstTable.getRows()
.get(firstTable.getRowCount() - 1)
.stream()
.map(Cell::getHeaderCells)
.collect(Collectors.toList());
assertThat(secondTable.getRows()
.stream()
.allMatch(row -> row.stream()
.map(Cell::getHeaderCells)
.toList().equals(firstTableHeaderCells))).isTrue();
}
@@ -206,32 +262,54 @@ public class PdfSegmentationServiceTest extends AbstractTest {
ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Rotated Table Headers.pdf");
ClassificationDocument document = buildClassificationDocument(Loader.loadPDF(pdfFileResource.getFile()));
assertThat(document.getSections().stream().flatMap(paragraph -> paragraph.getTables().stream()).collect(Collectors.toList())).isNotEmpty();
TablePageBlock firstTable = document.getSections().stream().flatMap(paragraph -> paragraph.getTables().stream()).collect(Collectors.toList()).get(0);
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
assertThat(document.getSections()
.stream()
.flatMap(paragraph -> paragraph.getTables()
.stream())
.collect(Collectors.toList())).isNotEmpty();
TablePageBlock firstTable = document.getSections()
.stream()
.flatMap(paragraph -> paragraph.getTables()
.stream())
.toList()
.get(0);
assertThat(firstTable.getColCount()).isEqualTo(8);
assertThat(firstTable.getRowCount()).isEqualTo(1);
TablePageBlock secondTable = document.getSections().stream().flatMap(paragraph -> paragraph.getTables().stream()).collect(Collectors.toList()).get(1);
TablePageBlock secondTable = document.getSections()
.stream()
.flatMap(paragraph -> paragraph.getTables()
.stream())
.toList()
.get(1);
assertThat(secondTable.getColCount()).isEqualTo(8);
assertThat(secondTable.getRowCount()).isEqualTo(6);
List<List<Cell>> firstTableHeaderCells = firstTable.getRows().get(0).stream().map(Collections::singletonList).collect(Collectors.toList());
assertThat(secondTable.getRows().stream().allMatch(row -> row.stream().map(Cell::getHeaderCells).toList().equals(firstTableHeaderCells))).isTrue();
List<List<Cell>> firstTableHeaderCells = firstTable.getRows()
.get(0)
.stream()
.map(Collections::singletonList)
.collect(Collectors.toList());
assertThat(secondTable.getRows()
.stream()
.allMatch(row -> row.stream()
.map(Cell::getHeaderCells)
.toList().equals(firstTableHeaderCells))).isTrue();
}
@Test // Non-sense test
@Test
public void testDoc56Page170() throws IOException {
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/56 Fludioxonil_RAR_12_Volume_3CA_B-7_2018-02-21_Page170.pdf");
ClassificationDocument document = buildClassificationDocument(Loader.loadPDF(pdfFileResource.getFile()));
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
validateTableSize(document, 4);
validateTable(document, 0, 1, 1, 0, 0);
validateTable(document, 1, 2, 2, 0, 0);
validateTable(document, 2, 6, 20, 0, 0);
validateTable(document, 3, 7, 31, 0, 0);
validateTable(document, 2, 4, 19, 12, 0);
validateTable(document, 3, 2, 12, 0, 0);
}
@@ -241,7 +319,7 @@ public class PdfSegmentationServiceTest extends AbstractTest {
ClassPathResource pdfFileResource = new ClassPathResource("files/211.pdf");
ClassificationDocument document = buildClassificationDocument(Loader.loadPDF(pdfFileResource.getFile()));
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
validateTableSize(document, 4);
@@ -258,36 +336,37 @@ public class PdfSegmentationServiceTest extends AbstractTest {
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/VV-931175_Page1.pdf");
ClassificationDocument document = buildClassificationDocument(Loader.loadPDF(pdfFileResource.getFile()));
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
validateTableSize(document, 1);
validateTable(document, 0, 8, 8, 0, 0);
List<List<String>> values = Arrays.asList(Arrays.asList("Annex point Reference within DAR/RAR",
"Author, date",
"Study title",
"Analytical method Author, date, No.",
"Technique, LOQ of the method, validated working range",
"Method meets analytical validation criteria",
"Remarks (in case validation criteria are not met)",
"Acceptability of the method"),
Arrays.asList("Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies"),
Arrays.asList("CA 7.1.2.1.1 DAR (2009)",
"Evans P.G. 2001 TMJ4569B, VV-323245",
"Azoxystrobin Laboratory Degradation Study in Three Soil Types, Sampled from Holland and the United Kingdom",
"Method: RAM 269 Johnson R.I., Tummon O.J., Earl M. 1995 RJ1864B, VV-377731 Johnson R.I., Tummon O.J., Earl M. 1998 RAM 269/02, VV-124072 Johnson R.I., Tummon O.J., Earl M. 2000 RAM 269/03, VV-123986 Validation: Robinson N.J. 2001 TMJ4617B, VV-895845",
"LC-MS/MS LOQ: 0.01 mg/kg (R401553 (SYN50165 7), R402173 (SYN501114 )) or 0.02 mg/kg (azoxystrobin, R230310, R234886) Working range: 0.02-1.0 or 0.01-0.5 mg/kg (depending on analyte) Other supporting quantificati on methods: HPLC-UV GC-MSD",
"Y",
"N/A",
"Y"));
"Author, date",
"Study title",
"Analytical method Author, date, No.",
"Technique, LOQ of the method, validated working range",
"Method meets analytical validation criteria",
"Remarks (in case validation criteria are not met)",
"Acceptability of the method"),
Arrays.asList(
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies"),
Arrays.asList("CA 7.1.2.1.1 DAR (2009)",
"Evans P.G. 2001 TMJ4569B, VV-323245",
"Azoxystrobin Laboratory Degradation Study in Three Soil Types, Sampled from Holland and the United Kingdom",
"Method: RAM 269 Johnson R.I., Tummon O.J., Earl M. 1995 RJ1864B, VV-377731 Johnson R.I., Tummon O.J., Earl M. 1998 RAM 269/02, VV-124072 Johnson R.I., Tummon O.J., Earl M. 2000 RAM 269/03, VV-123986 Validation: Robinson N.J. 2001 TMJ4617B, VV-895845",
"LC-MS/MS LOQ: 0.01 mg/kg (R401553 (SYN50165 7), R402173 (SYN501114 )) or 0.02 mg/kg (azoxystrobin, R230310, R234886) Working range: 0.02-1.0 or 0.01-0.5 mg/kg (depending on analyte) Other supporting quantificati on methods: HPLC-UV GC-MSD",
"Y",
"N/A",
"Y"));
validateTable(document, 0, values);
@@ -299,7 +378,7 @@ public class PdfSegmentationServiceTest extends AbstractTest {
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/27 A8637C - EU AIR3 - MCP Section 1 - Identity of the plant protection product_Page6.pdf");
ClassificationDocument document = buildClassificationDocument(Loader.loadPDF(pdfFileResource.getFile()));
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
toHtml(document, "/tmp/html.html");
@@ -319,7 +398,7 @@ public class PdfSegmentationServiceTest extends AbstractTest {
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/A20622A izRMS (CZ) fRR Part B9_Page185.pdf");
ClassificationDocument document = buildClassificationDocument(Loader.loadPDF(pdfFileResource.getFile()));
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
validateTableSize(document, 1);
@@ -332,7 +411,7 @@ public class PdfSegmentationServiceTest extends AbstractTest {
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/A20622A izRMS (CZ) fRR Part B9_Page185_fixed.pdf");
ClassificationDocument document = buildClassificationDocument(Loader.loadPDF(pdfFileResource.getFile()));
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
validateTableSize(document, 1);
@@ -345,7 +424,7 @@ public class PdfSegmentationServiceTest extends AbstractTest {
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/A20622A izZRMS (CZ) fRR Part B7_Page123.pdf");
ClassificationDocument document = buildClassificationDocument(Loader.loadPDF(pdfFileResource.getFile()));
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
validateTableSize(document, 6);
@@ -364,7 +443,7 @@ public class PdfSegmentationServiceTest extends AbstractTest {
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/77 Pirimicarb_RAR_08_Volume_3CA_B-6_2017-12-04_Page11.pdf");
ClassificationDocument document = buildClassificationDocument(Loader.loadPDF(pdfFileResource.getFile()));
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
validateTableSize(document, 3);
@@ -380,7 +459,7 @@ public class PdfSegmentationServiceTest extends AbstractTest {
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/95 Trinexapac-ethyl_RAR_08_Volume_3CA_B-6_2018-01-10_Page532.pdf");
ClassificationDocument document = buildClassificationDocument(Loader.loadPDF(pdfFileResource.getFile()));
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
validateTableSize(document, 1);
validateTable(document, 0, 9, 9, 0, 0);
@@ -393,7 +472,7 @@ public class PdfSegmentationServiceTest extends AbstractTest {
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/52 Fludioxonil_RAR_07_Volume_3CA_B-5_2018-02-21_Page175.pdf");
ClassificationDocument document = buildClassificationDocument(Loader.loadPDF(pdfFileResource.getFile()));
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
validateTableSize(document, 1);
@@ -407,7 +486,7 @@ public class PdfSegmentationServiceTest extends AbstractTest {
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/52 Fludioxonil_RAR_07_Volume_3CA_B-5_2018-02-21_Page174.pdf");
ClassificationDocument document = buildClassificationDocument(Loader.loadPDF(pdfFileResource.getFile()));
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
validateTableSize(document, 1);
validateTable(document, 0, 9, 6, 7, 0);
@@ -420,7 +499,7 @@ public class PdfSegmentationServiceTest extends AbstractTest {
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/19 Chlorothalonil RAR 08 Volume 3CA B 6b metabolites Oct 2017_Page35.pdf");
ClassificationDocument document = buildClassificationDocument(Loader.loadPDF(pdfFileResource.getFile()));
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
validateTableSize(document, 1);
validateTable(document, 0, 10, 6, 0, 0);
@@ -433,7 +512,7 @@ public class PdfSegmentationServiceTest extends AbstractTest {
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/19 Chlorothalonil RAR 08 Volume 3CA B 6b metabolites Oct 2017_Page161.pdf");
ClassificationDocument document = buildClassificationDocument(Loader.loadPDF(pdfFileResource.getFile()));
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
validateTableSize(document, 2);
validateTable(document, 0, 2, 2, 0, 0);
@@ -448,7 +527,7 @@ public class PdfSegmentationServiceTest extends AbstractTest {
ClassPathResource pdfFileResource = new ClassPathResource(
"files/SinglePages/47 Cyprodinil - EU AIR3 - MCA Section 5 Supplement - Toxicological and metabolism studies on the active substance_Page30.pdf");
ClassificationDocument document = buildClassificationDocument(Loader.loadPDF(pdfFileResource.getFile()));
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
validateTableSize(document, 2);
@@ -464,7 +543,7 @@ public class PdfSegmentationServiceTest extends AbstractTest {
ClassPathResource pdfFileResource = new ClassPathResource(
"files/SinglePages/49 Cyprodinil - EU AIR3 - MCA Section 8 Supplement - Ecotoxicological studies on the active substance_Page61.pdf");
ClassificationDocument document = buildClassificationDocument(Loader.loadPDF(pdfFileResource.getFile()));
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
validateTableSize(document, 2);
@@ -479,7 +558,7 @@ public class PdfSegmentationServiceTest extends AbstractTest {
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/81 Pirimicarb_RAR_20_Volume_3CP_A10788A (_Pirimor_)_B-9_2017-12-04_Page54.pdf");
ClassificationDocument document = buildClassificationDocument(Loader.loadPDF(pdfFileResource.getFile()));
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
validateTableSize(document, 2);
@@ -494,7 +573,7 @@ public class PdfSegmentationServiceTest extends AbstractTest {
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/85 Pydiflumetofen_DAR_08_Volume_3CA_B-6_2017-07-26_Page134.pdf");
ClassificationDocument document = buildClassificationDocument(Loader.loadPDF(pdfFileResource.getFile()));
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
validateTableSize(document, 2);
@@ -509,7 +588,7 @@ public class PdfSegmentationServiceTest extends AbstractTest {
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/Thiabendazole DAR Addendum for ED_April_2020_Page18.pdf");
ClassificationDocument document = buildClassificationDocument(Loader.loadPDF(pdfFileResource.getFile()));
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
validateTableSize(document, 4);
@@ -526,7 +605,7 @@ public class PdfSegmentationServiceTest extends AbstractTest {
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/15 - Pretilachlor - Acute Oral Toxicity (Up and Down Procedure) - Rat_Page18.pdf");
ClassificationDocument document = buildClassificationDocument(Loader.loadPDF(pdfFileResource.getFile()));
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
validateTableSize(document, 1);
@@ -541,7 +620,7 @@ public class PdfSegmentationServiceTest extends AbstractTest {
ClassPathResource pdfFileResource = new ClassPathResource(
"files/SinglePages/28 A8637C - EU AIR3 - MCP Section 10 - Ecotoxicological studies on the plant protection product_Page23.pdf");
ClassificationDocument document = buildClassificationDocument(Loader.loadPDF(pdfFileResource.getFile()));
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
validateTableSize(document, 2);
@@ -556,7 +635,7 @@ public class PdfSegmentationServiceTest extends AbstractTest {
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/24 - SYN549522 - Acute Oral Toxicity - Rats_Page17.pdf");
ClassificationDocument document = buildClassificationDocument(Loader.loadPDF(pdfFileResource.getFile()));
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
validateTableSize(document, 1);
@@ -570,7 +649,7 @@ public class PdfSegmentationServiceTest extends AbstractTest {
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/30 - Dicamba - Acute Oral Toxicity - Rats_Page5.pdf");
ClassificationDocument document = buildClassificationDocument(Loader.loadPDF(pdfFileResource.getFile()));
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
validateTableSize(document, 1);
@@ -579,10 +658,109 @@ public class PdfSegmentationServiceTest extends AbstractTest {
}
@Test
public void testT0() throws IOException {
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/T0 TableWithMergedCells.pdf");
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
validateTableSize(document, 1);
validateTable(document, 0, 6, 8, 0, 0);
}
@Test
public void testT1() throws IOException {
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/T1 MultipleNestedTable.pdf");
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
validateTableSize(document, 4);
validateTable(document, 0, 3, 3, 0, 0);
validateTable(document, 1, 3, 5, 2, 0);
validateTable(document, 2, 3, 3, 1, 0);
validateTable(document, 3, 3, 3, 0, 0);
}
@Test
public void testT2() throws IOException {
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/T2 MultipleTables.pdf");
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
validateTableSize(document, 6);
validateTable(document, 0, 5, 5, 0, 0);
validateTable(document, 1, 5, 6, 0, 0);
validateTable(document, 2, 5, 5, 0, 0);
validateTable(document, 3, 5, 5, 0, 0);
validateTable(document, 4, 5, 5, 0, 0);
validateTable(document, 5, 5, 5, 0, 0);
}
@Test
public void testT3() throws IOException {
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/T3 S-Meto_Page29.pdf");
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
validateTableSize(document, 1);
validateTable(document, 0, 6, 5, 0, 0);
}
@Test
public void testT4() throws IOException {
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/T4 138 IDD0000261736_Page16.pdf");
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
validateTableSize(document, 1);
validateTable(document, 0, 5, 8, 1, 0);
}
@Test
public void testT5() throws IOException {
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/T5 VV-640252-Page16.pdf");
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
validateTableSize(document, 6);
validateTable(document, 0, 1, 1, 0, 0);
validateTable(document, 1, 1, 1, 0, 0);
validateTable(document, 2, 1, 1, 0, 0);
validateTable(document, 3, 1, 1, 0, 0);
validateTable(document, 4, 1, 1, 0, 0);
validateTable(document, 5, 1, 1, 0, 0);
}
@SneakyThrows
private void toHtml(ClassificationDocument document, String filename) {
var tables = document.getSections().stream().flatMap(paragraph -> paragraph.getTables().stream()).toList();
var tables = document.getSections()
.stream()
.flatMap(paragraph -> paragraph.getTables()
.stream())
.toList();
StringBuilder sb = new StringBuilder();
int currentPage = 1;
@@ -603,9 +781,19 @@ public class PdfSegmentationServiceTest extends AbstractTest {
private void validateTable(ClassificationDocument document, int tableIndex, int colCount, int rowCount, int emptyCellsCountCorrect, int emptyCellsCountIncorrect) {
TablePageBlock table = document.getSections().stream().flatMap(paragraph -> paragraph.getTables().stream()).toList().get(tableIndex);
TablePageBlock table = document.getSections()
.stream()
.flatMap(paragraph -> paragraph.getTables()
.stream())
.toList()
.get(tableIndex);
List<List<Cell>> rows = table.getRows();
int emptyCellsFoundFound = rows.stream().flatMap(List::stream).toList().stream().filter(f -> f.toString().equals("")).toList().size();
int emptyCellsFoundFound = rows.stream()
.flatMap(List::stream)
.toList()
.stream()
.filter(f -> f.toString().isEmpty())
.toList().size();
for (List<Cell> row : table.getRows()) {
row.forEach(r -> System.out.println(r.toString()));
@@ -620,11 +808,20 @@ public class PdfSegmentationServiceTest extends AbstractTest {
private void validateTable(ClassificationDocument document, int tableIndex, List<List<String>> values) {
TablePageBlock table = document.getSections().stream().flatMap(paragraph -> paragraph.getTables().stream()).toList().get(tableIndex);
TablePageBlock table = document.getSections()
.stream()
.flatMap(paragraph -> paragraph.getTables()
.stream())
.toList()
.get(tableIndex);
List<List<Cell>> rows = table.getRows();
List<Cell> rowsFlattened = rows.stream().flatMap(List::stream).toList();
List<String> valuesFlattened = values.stream().flatMap(List::stream).toList();
List<Cell> rowsFlattened = rows.stream()
.flatMap(List::stream)
.toList();
List<String> valuesFlattened = values.stream()
.flatMap(List::stream)
.toList();
for (int i = 0; i < valuesFlattened.size(); i++) {
Cell cell = rowsFlattened.get(i);
@@ -637,7 +834,11 @@ public class PdfSegmentationServiceTest extends AbstractTest {
private void validateTableSize(ClassificationDocument document, int tableSize) {
assertThat(document.getSections().stream().flatMap(paragraph -> paragraph.getTables().stream()).toList().size()).isEqualTo(tableSize);
assertThat(document.getSections()
.stream()
.flatMap(paragraph -> paragraph.getTables()
.stream())
.toList().size()).isEqualTo(tableSize);
}
@@ -13,8 +13,8 @@ import com.knecon.fforesight.service.layoutparser.processor.model.PageInformatio
import com.knecon.fforesight.service.layoutparser.processor.services.DividingColumnDetectionService;
import com.knecon.fforesight.service.layoutparser.processor.services.GapDetectionService;
import com.knecon.fforesight.service.layoutparser.processor.services.GapsAcrossLinesService;
import com.knecon.fforesight.service.layoutparser.processor.services.PageContentExtractor;
import com.knecon.fforesight.service.layoutparser.processor.services.PageInformationService;
import com.knecon.fforesight.service.layoutparser.processor.services.PageContentExtractor;
import com.knecon.fforesight.service.layoutparser.server.utils.visualizations.PdfDraw;
import lombok.SneakyThrows;
@@ -36,8 +36,7 @@ class GapAcrossLinesDetectionServiceTest {
System.out.println("start column detection");
start = System.currentTimeMillis();
for (PageInformation pageInformation : pageInformations) {
GapInformation gapInformation = GapDetectionService.findGapsInLines(pageInformation.getPageContents().getSortedTextPositionSequences(),
pageInformation.getMainBodyTextFrame());
GapInformation gapInformation = GapDetectionService.findGapsInLines(pageInformation.getPageContents().getSortedTextPositionSequences(), pageInformation.getMainBodyTextFrame());
columnsPerPage.add(GapsAcrossLinesService.detectXGapsAcrossLines(gapInformation, pageInformation.getMainBodyTextFrame()));
}
System.out.printf("Finished column detection in %d ms%n", System.currentTimeMillis() - start);
@@ -12,8 +12,8 @@ import org.junit.jupiter.api.Test;
import com.knecon.fforesight.service.layoutparser.processor.model.PageInformation;
import com.knecon.fforesight.service.layoutparser.processor.model.text.TextPositionSequence;
import com.knecon.fforesight.service.layoutparser.processor.services.InvisibleTableDetectionService;
import com.knecon.fforesight.service.layoutparser.processor.services.PageContentExtractor;
import com.knecon.fforesight.service.layoutparser.processor.services.PageInformationService;
import com.knecon.fforesight.service.layoutparser.processor.services.PageContentExtractor;
import com.knecon.fforesight.service.layoutparser.processor.utils.RectangleTransformations;
import com.knecon.fforesight.service.layoutparser.server.utils.visualizations.PdfDraw;
@@ -22,6 +22,7 @@ class MainBodyTextFrameExtractionServiceTest {
String tmpFileName = Path.of("/tmp/").resolve(Path.of(fileName).getFileName() + "_MAIN_BODY.pdf").toString();
List<PageContents> sortedTextPositionSequence = PageContentExtractor.getSortedPageContents(fileName);
}
}
@@ -3,12 +3,13 @@ package com.knecon.fforesight.service.layoutparser.server.services;
import java.nio.file.Path;
import java.util.List;
import org.junit.jupiter.api.Disabled;
import org.junit.jupiter.api.Test;
import com.knecon.fforesight.service.layoutparser.processor.model.PageContents;
import com.knecon.fforesight.service.layoutparser.processor.model.text.TextPositionSequence;
import com.knecon.fforesight.service.layoutparser.processor.services.PageContentExtractor;
import com.knecon.fforesight.service.layoutparser.processor.utils.RectangleTransformations;
import com.knecon.fforesight.service.layoutparser.processor.services.PageContentExtractor;
import com.knecon.fforesight.service.layoutparser.server.utils.visualizations.PdfDraw;
import lombok.SneakyThrows;
@@ -26,11 +27,14 @@ class PageContentExtractorTest {
PdfDraw.drawRectanglesPerPageNumberedByLine(fileName,
textPositionPerPage.stream()
.map(t -> t.getSortedTextPositionSequences().stream().map(TextPositionSequence::getRectangle).map(RectangleTransformations::toRectangle2D)
.map(t -> t.getSortedTextPositionSequences()
.stream()
.map(TextPositionSequence::getRectangle)
.map(RectangleTransformations::toRectangle2D)
//.map(textPositionSequence -> (Rectangle2D) new Rectangle2D.Double(textPositionSequence.getMaxXDirAdj(), textPositionSequence.getMaxYDirAdj(), textPositionSequence.getWidth(), textPositionSequence.getHeight()))
.map(List::of).toList())
.toList(),
tmpFileName);
.map(List::of)
.toList())
.toList(), tmpFileName);
}
}
@@ -7,8 +7,8 @@ import org.junit.jupiter.api.Disabled;
import org.junit.jupiter.api.Test;
import com.knecon.fforesight.service.layoutparser.processor.model.PageInformation;
import com.knecon.fforesight.service.layoutparser.processor.services.PageContentExtractor;
import com.knecon.fforesight.service.layoutparser.processor.services.PageInformationService;
import com.knecon.fforesight.service.layoutparser.processor.services.PageContentExtractor;
import com.knecon.fforesight.service.layoutparser.server.utils.visualizations.PdfDraw;
import lombok.SneakyThrows;
@@ -38,7 +38,6 @@ class PageInformationServiceTest {
System.out.printf("Finished drawing rectangles in %d ms%n", System.currentTimeMillis() - start);
}
@Test
@Disabled
@SneakyThrows
@@ -26,8 +26,6 @@ import com.knecon.fforesight.service.layoutparser.processor.services.RulingClean
import com.knecon.fforesight.service.layoutparser.processor.services.factory.DocumentGraphFactory;
import com.knecon.fforesight.service.layoutparser.processor.services.mapper.DocumentDataMapper;
import com.knecon.fforesight.service.layoutparser.processor.services.mapper.PropertiesMapper;
import com.knecon.fforesight.service.layoutparser.processor.services.visualization.LayoutGridService;
import com.knecon.fforesight.service.layoutparser.processor.services.visualization.ViewerDocumentService;
import com.knecon.fforesight.service.layoutparser.server.utils.BuildDocumentTest;
import com.knecon.fforesight.service.layoutparser.server.utils.visualizations.PdfDraw;
@@ -57,9 +55,6 @@ public class RulingCleaningServiceTest extends BuildDocumentTest {
@SneakyThrows
public void testTableExtraction() {
LayoutGridService layoutGridService = new LayoutGridService();
ViewerDocumentService viewerDocumentService = new ViewerDocumentService(layoutGridService);
ClassPathResource resource = new ClassPathResource("files");
List<String> pdfFileNames = Files.walk(resource.getFile().toPath())
.filter(path -> path.getFileName().toString().endsWith(".pdf"))
@@ -67,8 +62,8 @@ public class RulingCleaningServiceTest extends BuildDocumentTest {
.map(Path::toString)
.toList();
for (int i = 0; i < pdfFileNames.size(); i++) {
writeJsons(Path.of(pdfFileNames.get(i)));
for (String pdfFileName : pdfFileNames) {
writeJsons(Path.of(pdfFileName));
}
}
@@ -77,22 +72,24 @@ public class RulingCleaningServiceTest extends BuildDocumentTest {
private void writeJsons(Path filename) {
Document documentGraphBefore = DocumentGraphFactory.buildDocumentGraph(layoutParsingPipeline.parseLayout(LayoutParsingType.REDACT_MANAGER,
Loader.loadPDF(filename.toFile()),
filename.toFile(),
new ImageServiceResponse(),
new TableServiceResponse()));
new TableServiceResponse(),
filename.toFile().toString()));
Document documentGraphAfter = DocumentGraphFactory.buildDocumentGraph(layoutParsingPipeline.parseLayout(LayoutParsingType.REDACT_MANAGER,
Loader.loadPDF(filename.toFile()),
filename.toFile(),
new ImageServiceResponse(),
new TableServiceResponse()));
new TableServiceResponse(),
filename.toFile().toString()));
DocumentData documentDataBefore = DocumentDataMapper.toDocumentData(documentGraphBefore);
DocumentData documentDataAfter = DocumentDataMapper.toDocumentData(documentGraphAfter);
if (!compareStructures(documentDataBefore.getDocumentStructure(), documentDataAfter.getDocumentStructure(), filename.getFileName().toString())) {
String tmpFileNameBefore = "C:/Users/YANNIK~1/AppData/Local/Temp/before." + filename.getFileName().toString();
if (!compareStructures(documentDataBefore.getDocumentStructure(), documentDataAfter.getDocumentStructure())) {
String tmpFileNameBefore = "/tmp/before." + filename.getFileName().toString();
try (PDDocument pdDocument = Loader.loadPDF(filename.toFile())) {
PdfDraw.drawDocumentGraph(pdDocument, documentGraphBefore);
pdDocument.save(tmpFileNameBefore);
}
String tmpFileNameAfter = "C:/Users/YANNIK~1/AppData/Local/Temp/after." + filename.getFileName().toString();
String tmpFileNameAfter = "/tmp/after." + filename.getFileName().toString();
try (PDDocument pdDocument = Loader.loadPDF(filename.toFile())) {
PdfDraw.drawDocumentGraph(pdDocument, documentGraphAfter);
pdDocument.save(tmpFileNameAfter);
@@ -103,9 +100,9 @@ public class RulingCleaningServiceTest extends BuildDocumentTest {
@SneakyThrows
private boolean compareStructures(DocumentStructure structure1, DocumentStructure structure2, String pdfName) {
private boolean compareStructures(DocumentStructure structure1, DocumentStructure structure2) {
List listStructure1 = structure1.streamAllEntries()
List<Table> listStructure1 = structure1.streamAllEntries()
.filter(entryData -> entryData.getType().equals(NodeType.TABLE))
.map(DocumentStructure.EntryData::getProperties)
.map(properties -> {
@@ -115,7 +112,7 @@ public class RulingCleaningServiceTest extends BuildDocumentTest {
})
.toList();
List listStructure2 = structure2.streamAllEntries()
List<Table> listStructure2 = structure2.streamAllEntries()
.filter(entryData -> entryData.getType().equals(NodeType.TABLE))
.map(DocumentStructure.EntryData::getProperties)
.map(properties -> {
@@ -126,8 +123,8 @@ public class RulingCleaningServiceTest extends BuildDocumentTest {
.toList();
for (int i = 0; i < listStructure1.size(); i++) {
Table tableNode1 = (Table) listStructure1.get(i);
Table tableNode2 = (Table) listStructure2.get(i);
Table tableNode1 = listStructure1.get(i);
Table tableNode2 = listStructure2.get(i);
if (tableNode1.getNumberOfRows() != tableNode2.getNumberOfRows() || tableNode1.getNumberOfCols() != tableNode2.getNumberOfCols()) {
return false;
}
@@ -1,6 +1,7 @@
package com.knecon.fforesight.service.layoutparser.server.utils;
import java.io.InputStream;
import java.util.Map;
import java.util.Optional;
import org.junit.jupiter.api.AfterEach;
@@ -110,6 +111,7 @@ public abstract class AbstractTest {
protected LayoutParsingRequest buildDefaultLayoutParsingRequest(LayoutParsingType layoutParsingType) {
return LayoutParsingRequest.builder()
.identifier(Map.of("fileId", "1337"))
.layoutParsingType(layoutParsingType)
.originFileStorageId(ORIGIN_FILE_ID)
.tablesFileStorageId(Optional.of(TABLE_FILE_ID))

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