Compare commits

...
19 Commits
Author SHA1 Message Date
Kilian Schüttler e7bf607663 Merge branch 'hotfix' into 'main'
hotfix: double viewerdoc writes in rare cases lead to some contentstreams not being written

See merge request fforesight/layout-parser!104
2024-02-26 12:32:14 +01:00
Kilian Schuettler f4d789311c hotfix: double viewerdoc writes in rare cases lead to some contentstreams not being written 2024-02-26 12:24:15 +01:00
Yannik Hampe 9817eae897 Merge branch 'RED-8481-fix' into 'main'
Red 8481 fix

See merge request fforesight/layout-parser!103
2024-02-23 14:08:57 +01:00
yhampe 477f6af886 RED-8481: Use visual layout parsing to detect signatures
added a new layer for visual parsing results

checkstyle
2024-02-23 14:02:53 +01:00
yhampe 2c171b6a9e RED-8481: Use visual layout parsing to detect signatures
added a new layer for visual parsing results

codestyle
2024-02-23 13:55:11 +01:00
yhampe 71477dabde RED-8481: Use visual layout parsing to detect signatures
added a new layer for visual parsing results

codestyle
2024-02-23 12:46:51 +01:00
yhampe a927cbd9dc RED-8481: Use visual layout parsing to detect signatures
added a new layer for visual parsing results

fixed tests
2024-02-23 12:38:05 +01:00
yhampe a1521877d7 RED-8481: Use visual layout parsing to detect signatures
added a new layer for visual parsing results

added a source label to image properties to enable rules
2024-02-23 12:20:11 +01:00
Maverick Studer f4b6386e1c Merge branch 'RED-8550-testing' into 'main'
RED-8550: Faulty table recognition and text duplication leads to huge sections

See merge request fforesight/layout-parser!102
2024-02-21 13:54:30 +01:00
Maverick Studer 1d64028158 RED-8550: Faulty table recognition and text duplication leads to huge sections 2024-02-21 13:54:30 +01:00
Yannik Hampe 0979a267d4 Merge branch 'RED-8481' into 'main'
RED-8481: Use visual layout parsing to detect signatures

See merge request fforesight/layout-parser!101
2024-02-15 13:07:06 +01:00
yhampe cc77d19500 RED-8481: Use visual layout parsing to detect signatures
addressed review comments
2024-02-15 13:01:30 +01:00
yhampe fa048b2fe0 RED-8481: Use visual layout parsing to detect signatures
addressed review comments
2024-02-15 12:19:26 +01:00
yhampe bdf1161c91 RED-8481: Use visual layout parsing to detect signatures
addressed review comments
2024-02-15 12:12:23 +01:00
yhampe b4a225144d RED-8481: Use visual layout parsing to detect signatures
working on failing tests
2024-02-15 10:16:07 +01:00
yhampe 903b1c1fd4 RED-8481: Use visual layout parsing to detect signatures
fixed failing tests because of null pointer
2024-02-15 09:27:07 +01:00
yhampe c3e7582ee3 RED-8481: Use visual layout parsing to detect signatures
fixed failing tests because of null pointer
2024-02-14 12:33:36 +01:00
yhampe cfc5db45cd RED-8481: Use visual layout parsing to detect signatures
fixed failing tests because of null pointer
2024-02-14 12:24:32 +01:00
yhampe fbd0196719 RED-8481: Use visual layout parsing to detect signatures
implemented visuallayoutparsingresult
2024-02-14 12:16:37 +01:00
47 changed files with 1023 additions and 323 deletions
@@ -5,6 +5,7 @@ import java.io.Serializable;
import java.util.Arrays;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.stream.Stream;
import io.swagger.v3.oas.annotations.media.Schema;
@@ -115,6 +116,8 @@ public class DocumentStructure implements Serializable {
Map<String, String> properties;
@Schema(description = "All child Entries of this Entry.", example = "[1, 2, 3]")
List<EntryData> children;
@Schema(description = "Describes the origin of the semantic node", example = "[ALGORITHM]")
Set<LayoutEngine> engines;
@Override
@@ -0,0 +1,6 @@
package com.knecon.fforesight.service.layoutparser.internal.api.data.redaction;
public enum LayoutEngine {
ALGORITHM,
AI
}
@@ -18,11 +18,15 @@ public record LayoutParsingRequest(
@Schema(description = "Path to the original PDF file.")//
@NonNull String originFileStorageId,//
@Schema(description = "Optional Path to the table extraction file.")//
Optional<String> tablesFileStorageId,//
@Schema(description = "Optional Path to the image classification file.")//
Optional<String> imagesFileStorageId,//
@Schema(description = "Optional Path to the the visual layout parsing service file") Optional<String> visualLayoutParsingFileId,//
@Schema(description = "Path where the Document Structure File will be stored.")//
@NonNull String structureFileStorageId,//
@Schema(description = "Path where the Research Data File will be stored.")//
@@ -33,9 +33,11 @@ import com.knecon.fforesight.service.layoutparser.processor.model.text.TextPageB
import com.knecon.fforesight.service.layoutparser.processor.model.text.TextPositionSequence;
import com.knecon.fforesight.service.layoutparser.processor.python_api.adapter.CvTableParsingAdapter;
import com.knecon.fforesight.service.layoutparser.processor.python_api.adapter.ImageServiceResponseAdapter;
import com.knecon.fforesight.service.layoutparser.processor.python_api.adapter.VisualLayoutParsingAdapter;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.image.ImageServiceResponse;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.TableCells;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.TableServiceResponse;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.VisualLayoutParsingResponse;
import com.knecon.fforesight.service.layoutparser.processor.services.BodyTextFrameService;
import com.knecon.fforesight.service.layoutparser.processor.services.RulingCleaningService;
import com.knecon.fforesight.service.layoutparser.processor.services.SectionsBuilderService;
@@ -86,6 +88,7 @@ public class LayoutParsingPipeline {
RedactManagerBlockificationService redactManagerBlockificationService;
LayoutGridService layoutGridService;
ObservationRegistry observationRegistry;
VisualLayoutParsingAdapter visualLayoutParsingAdapter;
public LayoutParsingFinishedEvent parseLayoutAndSaveFilesToStorage(LayoutParsingRequest layoutParsingRequest) throws IOException {
@@ -94,23 +97,36 @@ public class LayoutParsingPipeline {
log.info("Starting layout parsing for {}", layoutParsingRequest.identifier());
File originFile = layoutParsingStorageService.getOriginFile(layoutParsingRequest.originFileStorageId());
File viewerDocumentFile = layoutParsingStorageService.getViewerDocFile(layoutParsingRequest.viewerDocumentStorageId()).orElse(originFile);
File viewerDocumentFile = layoutParsingStorageService.getViewerDocFile(layoutParsingRequest.viewerDocumentStorageId())
.orElse(originFile);
VisualLayoutParsingResponse visualLayoutParsingResponse = new VisualLayoutParsingResponse();
if (layoutParsingRequest.visualLayoutParsingFileId()
.isPresent()) {
visualLayoutParsingResponse = layoutParsingStorageService.getVisualLayoutParsingFile(layoutParsingRequest.visualLayoutParsingFileId()
.get());
}
ImageServiceResponse imageServiceResponse = new ImageServiceResponse();
if (layoutParsingRequest.imagesFileStorageId().isPresent()) {
imageServiceResponse = layoutParsingStorageService.getImagesFile(layoutParsingRequest.imagesFileStorageId().get());
if (layoutParsingRequest.imagesFileStorageId()
.isPresent()) {
imageServiceResponse = layoutParsingStorageService.getImagesFile(layoutParsingRequest.imagesFileStorageId()
.get());
}
TableServiceResponse tableServiceResponse = new TableServiceResponse();
if (layoutParsingRequest.tablesFileStorageId().isPresent()) {
tableServiceResponse = layoutParsingStorageService.getTablesFile(layoutParsingRequest.tablesFileStorageId().get());
if (layoutParsingRequest.tablesFileStorageId()
.isPresent()) {
tableServiceResponse = layoutParsingStorageService.getTablesFile(layoutParsingRequest.tablesFileStorageId()
.get());
}
ClassificationDocument classificationDocument = parseLayout(layoutParsingRequest.layoutParsingType(),
originFile,
imageServiceResponse,
tableServiceResponse,
layoutParsingRequest.identifier().toString());
originFile,
imageServiceResponse,
tableServiceResponse,
visualLayoutParsingResponse,
layoutParsingRequest.identifier().toString());
log.info("Building document graph for {}", layoutParsingRequest.identifier());
@@ -142,25 +158,25 @@ public class LayoutParsingPipeline {
.numberOfPages(documentGraph.getNumberOfPages())
.duration(System.currentTimeMillis() - start)
.message(format("""
Layout parsing has finished in %.02f s.
identifiers: %s
%s
Files have been saved with Ids:
Structure: %s
Text: %s
Positions: %s
PageData: %s
Simplified Text: %s
Viewer Doc: %s""",
((float) (System.currentTimeMillis() - start)) / 1000,
layoutParsingRequest.identifier(),
buildSemanticNodeCountMessage(documentGraph.getNumberOfPages(), documentGraph.buildSemanticNodeCounts()),
layoutParsingRequest.structureFileStorageId(),
layoutParsingRequest.textBlockFileStorageId(),
layoutParsingRequest.positionBlockFileStorageId(),
layoutParsingRequest.pageFileStorageId(),
layoutParsingRequest.simplifiedTextStorageId(),
layoutParsingRequest.viewerDocumentStorageId()))
Layout parsing has finished in %.02f s.
identifiers: %s
%s
Files have been saved with Ids:
Structure: %s
Text: %s
Positions: %s
PageData: %s
Simplified Text: %s
Viewer Doc: %s""",
((float) (System.currentTimeMillis() - start)) / 1000,
layoutParsingRequest.identifier(),
buildSemanticNodeCountMessage(documentGraph.getNumberOfPages(), documentGraph.buildSemanticNodeCounts()),
layoutParsingRequest.structureFileStorageId(),
layoutParsingRequest.textBlockFileStorageId(),
layoutParsingRequest.positionBlockFileStorageId(),
layoutParsingRequest.pageFileStorageId(),
layoutParsingRequest.simplifiedTextStorageId(),
layoutParsingRequest.viewerDocumentStorageId()))
.build();
}
@@ -170,9 +186,9 @@ public class LayoutParsingPipeline {
AtomicReference<Document> documentReference = new AtomicReference<>();
Observation.createNotStarted("LayoutParsingPipeline", observationRegistry).contextualName("build-document-graph").observe(() -> {
documentReference.set(DocumentGraphFactory.buildDocumentGraph(classificationDocument));
});
Observation.createNotStarted("LayoutParsingPipeline", observationRegistry)
.contextualName("build-document-graph")
.observe(() -> documentReference.set(DocumentGraphFactory.buildDocumentGraph(classificationDocument)));
return documentReference.get();
}
@@ -181,14 +197,14 @@ public class LayoutParsingPipeline {
private String buildSemanticNodeCountMessage(int numberOfPages, Map<NodeType, Long> semanticNodeCounts) {
return String.format("%d pages with %d sections, %d headlines, %d paragraphs, %d tables with %d cells, %d headers, and %d footers parsed",
numberOfPages,
semanticNodeCounts.get(NodeType.SECTION) == null ? 0 : semanticNodeCounts.get(NodeType.SECTION),
semanticNodeCounts.get(NodeType.HEADLINE) == null ? 0 : semanticNodeCounts.get(NodeType.HEADLINE),
semanticNodeCounts.get(NodeType.PARAGRAPH) == null ? 0 : semanticNodeCounts.get(NodeType.PARAGRAPH),
semanticNodeCounts.get(NodeType.TABLE) == null ? 0 : semanticNodeCounts.get(NodeType.TABLE),
semanticNodeCounts.get(NodeType.TABLE_CELL) == null ? 0 : semanticNodeCounts.get(NodeType.TABLE_CELL),
semanticNodeCounts.get(NodeType.HEADER) == null ? 0 : semanticNodeCounts.get(NodeType.HEADER),
semanticNodeCounts.get(NodeType.FOOTER) == null ? 0 : semanticNodeCounts.get(NodeType.FOOTER));
numberOfPages,
semanticNodeCounts.get(NodeType.SECTION) == null ? 0 : semanticNodeCounts.get(NodeType.SECTION),
semanticNodeCounts.get(NodeType.HEADLINE) == null ? 0 : semanticNodeCounts.get(NodeType.HEADLINE),
semanticNodeCounts.get(NodeType.PARAGRAPH) == null ? 0 : semanticNodeCounts.get(NodeType.PARAGRAPH),
semanticNodeCounts.get(NodeType.TABLE) == null ? 0 : semanticNodeCounts.get(NodeType.TABLE),
semanticNodeCounts.get(NodeType.TABLE_CELL) == null ? 0 : semanticNodeCounts.get(NodeType.TABLE_CELL),
semanticNodeCounts.get(NodeType.HEADER) == null ? 0 : semanticNodeCounts.get(NodeType.HEADER),
semanticNodeCounts.get(NodeType.FOOTER) == null ? 0 : semanticNodeCounts.get(NodeType.FOOTER));
}
@@ -198,13 +214,14 @@ public class LayoutParsingPipeline {
File originFile,
ImageServiceResponse imageServiceResponse,
TableServiceResponse tableServiceResponse,
VisualLayoutParsingResponse visualLayoutParsingResponse,
String identifier) {
PDDocument originDocument = openDocument(originFile);
addNumberOfPagesToTrace(originDocument.getNumberOfPages(), Files.size(originFile.toPath()));
Map<Integer, List<TableCells>> pdfTableCells = cvTableParsingAdapter.buildCvParsedTablesPerPage(tableServiceResponse);
Map<Integer, List<ClassifiedImage>> pdfImages = imageServiceResponseAdapter.buildClassifiedImagesPerPage(imageServiceResponse);
Map<Integer, List<ClassifiedImage>> signatures = visualLayoutParsingAdapter.buildExtractedSignaturesPerPage(visualLayoutParsingResponse);
ClassificationDocument classificationDocument = new ClassificationDocument();
List<ClassificationPage> classificationPages = new ArrayList<>();
@@ -264,6 +281,14 @@ public class LayoutParsingPipeline {
imageServiceResponseAdapter.findOcr(classificationPage);
}
if (signatures.containsKey(pageNumber)) {
if (classificationPage.getImages() == null || classificationPage.getImages().size() == 0) {
classificationPage.setImages(signatures.get(pageNumber));
} else {
classificationPage.getImages().addAll(signatures.get(pageNumber));
}
}
tableExtractionService.extractTables(cleanRulings, classificationPage);
buildPageStatistics(classificationPage);
@@ -319,9 +344,7 @@ public class LayoutParsingPipeline {
private void increaseDocumentStatistics(ClassificationPage classificationPage, ClassificationDocument document) {
if (!classificationPage.isLandscape()) {
document.getFontSizeCounter().addAll(classificationPage.getFontSizeCounter().getCountPerValue());
}
document.getFontSizeCounter().addAll(classificationPage.getFontSizeCounter().getCountPerValue());
document.getFontCounter().addAll(classificationPage.getFontCounter().getCountPerValue());
document.getTextHeightCounter().addAll(classificationPage.getTextHeightCounter().getCountPerValue());
document.getFontStyleCounter().addAll(classificationPage.getFontStyleCounter().getCountPerValue());
@@ -10,8 +10,6 @@ import java.nio.file.Paths;
import java.nio.file.StandardOpenOption;
import java.util.Optional;
import org.apache.pdfbox.Loader;
import org.apache.pdfbox.pdmodel.PDDocument;
import org.springframework.stereotype.Service;
import com.fasterxml.jackson.databind.ObjectMapper;
@@ -22,6 +20,7 @@ import com.knecon.fforesight.service.layoutparser.internal.api.data.taas.Researc
import com.knecon.fforesight.service.layoutparser.internal.api.queue.LayoutParsingRequest;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.image.ImageServiceResponse;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.TableServiceResponse;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.VisualLayoutParsingResponse;
import com.knecon.fforesight.tenantcommons.TenantContext;
import io.micrometer.observation.annotation.Observed;
@@ -79,6 +78,14 @@ public class LayoutParsingStorageService {
}
}
public VisualLayoutParsingResponse getVisualLayoutParsingFile(String storageId) throws IOException {
try (InputStream inputStream = getObject(storageId)) {
VisualLayoutParsingResponse visualLayoutParsingResponse = objectMapper.readValue(inputStream, VisualLayoutParsingResponse.class);
return visualLayoutParsingResponse;
}
}
@Observed(name = "LayoutParsingStorageService", contextualName = "store-document-data")
public void storeDocumentData(LayoutParsingRequest layoutParsingRequest, DocumentData documentData) {
@@ -10,6 +10,7 @@ import java.util.Set;
import java.util.stream.Collectors;
import java.util.stream.Stream;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.LayoutEngine;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.NodeType;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.DocumentTree;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.entity.RedactionEntity;
@@ -30,6 +31,9 @@ import lombok.experimental.FieldDefaults;
@FieldDefaults(level = AccessLevel.PRIVATE)
public class Document implements GenericSemanticNode {
@Builder.Default
Set<LayoutEngine> engines = new HashSet<>(Set.of(LayoutEngine.ALGORITHM));
Set<Page> pages;
DocumentTree documentTree;
Integer numberOfPages;
@@ -56,13 +60,15 @@ public class Document implements GenericSemanticNode {
public List<Section> getMainSections() {
return streamChildrenOfType(NodeType.SECTION).map(node -> (Section) node).collect(Collectors.toList());
return streamChildrenOfType(NodeType.SECTION).map(node -> (Section) node)
.collect(Collectors.toList());
}
public Stream<TextBlock> streamTerminalTextBlocksInOrder() {
return streamAllNodes().filter(SemanticNode::isLeaf).map(SemanticNode::getLeafTextBlock);
return streamAllNodes().filter(SemanticNode::isLeaf)
.map(SemanticNode::getLeafTextBlock);
}
@@ -83,13 +89,16 @@ public class Document implements GenericSemanticNode {
@Override
public Headline getHeadline() {
return streamAllSubNodesOfType(NodeType.HEADLINE).map(node -> (Headline) node).findFirst().orElse(Headline.builder().build());
return streamAllSubNodesOfType(NodeType.HEADLINE).map(node -> (Headline) node)
.findFirst()
.orElse(Headline.builder().build());
}
private Stream<SemanticNode> streamAllNodes() {
return documentTree.allEntriesInOrder().map(DocumentTree.Entry::getNode);
return documentTree.allEntriesInOrder()
.map(DocumentTree.Entry::getNode);
}
@@ -6,6 +6,7 @@ import java.util.List;
import java.util.Map;
import java.util.Set;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.LayoutEngine;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.NodeType;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.DocumentTree;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.entity.RedactionEntity;
@@ -26,6 +27,9 @@ import lombok.experimental.FieldDefaults;
@FieldDefaults(level = AccessLevel.PRIVATE)
public class Footer implements GenericSemanticNode {
@Builder.Default
Set<LayoutEngine> engines = new HashSet<>(Set.of(LayoutEngine.ALGORITHM));
List<Integer> treeId;
TextBlock leafTextBlock;
@@ -6,6 +6,7 @@ import java.util.List;
import java.util.Map;
import java.util.Set;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.LayoutEngine;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.NodeType;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.DocumentTree;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.entity.RedactionEntity;
@@ -26,6 +27,8 @@ import lombok.experimental.FieldDefaults;
@FieldDefaults(level = AccessLevel.PRIVATE)
public class Header implements GenericSemanticNode {
@Builder.Default
Set<LayoutEngine> engines = new HashSet<>(Set.of(LayoutEngine.ALGORITHM));
List<Integer> treeId;
TextBlock leafTextBlock;
@@ -6,6 +6,7 @@ import java.util.List;
import java.util.Map;
import java.util.Set;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.LayoutEngine;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.NodeType;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.DocumentTree;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.entity.RedactionEntity;
@@ -26,6 +27,8 @@ import lombok.experimental.FieldDefaults;
@FieldDefaults(level = AccessLevel.PRIVATE)
public class Headline implements GenericSemanticNode {
@Builder.Default
Set<LayoutEngine> engines = new HashSet<>(Set.of(LayoutEngine.ALGORITHM));
List<Integer> treeId;
TextBlock leafTextBlock;
@@ -8,6 +8,7 @@ import java.util.List;
import java.util.Map;
import java.util.Set;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.LayoutEngine;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.NodeType;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.DocumentTree;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.entity.RedactionEntity;
@@ -29,6 +30,9 @@ import lombok.experimental.FieldDefaults;
@FieldDefaults(level = AccessLevel.PRIVATE)
public class Image implements GenericSemanticNode {
@Builder.Default
Set<LayoutEngine> engines = new HashSet<>(Set.of(LayoutEngine.ALGORITHM));
List<Integer> treeId;
String id;
@@ -66,7 +70,9 @@ public class Image implements GenericSemanticNode {
@Override
public TextBlock getTextBlock() {
return streamAllSubNodes().filter(SemanticNode::isLeaf).map(SemanticNode::getLeafTextBlock).collect(new TextBlockCollector());
return streamAllSubNodes().filter(SemanticNode::isLeaf)
.map(SemanticNode::getLeafTextBlock)
.collect(new TextBlockCollector());
}
@@ -6,6 +6,8 @@ public enum ImageType {
LOGO,
FORMULA,
SIGNATURE,
SIGNATURE_VISUAL,
OTHER,
OCR;
@@ -6,6 +6,7 @@ import java.util.List;
import java.util.Map;
import java.util.Set;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.LayoutEngine;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.NodeType;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.DocumentTree;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.entity.RedactionEntity;
@@ -24,6 +25,9 @@ import lombok.experimental.FieldDefaults;
@FieldDefaults(level = AccessLevel.PRIVATE)
public class Paragraph implements GenericSemanticNode {
@Builder.Default
Set<LayoutEngine> engines = new HashSet<>(Set.of(LayoutEngine.ALGORITHM));
List<Integer> treeId;
TextBlock leafTextBlock;
@@ -6,6 +6,7 @@ import java.util.List;
import java.util.Map;
import java.util.Set;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.LayoutEngine;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.NodeType;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.DocumentTree;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.entity.RedactionEntity;
@@ -27,6 +28,8 @@ import lombok.extern.slf4j.Slf4j;
@FieldDefaults(level = AccessLevel.PRIVATE)
public class Section implements GenericSemanticNode {
@Builder.Default
Set<LayoutEngine> engines = new HashSet<>(Set.of(LayoutEngine.ALGORITHM));
List<Integer> treeId;
TextBlock textBlock;
@@ -50,7 +53,8 @@ public class Section implements GenericSemanticNode {
public boolean hasTables() {
return streamAllSubNodesOfType(NodeType.TABLE).findAny().isPresent();
return streamAllSubNodesOfType(NodeType.TABLE).findAny()
.isPresent();
}
@@ -58,7 +62,9 @@ public class Section implements GenericSemanticNode {
public TextBlock getTextBlock() {
if (textBlock == null) {
textBlock = streamAllSubNodes().filter(SemanticNode::isLeaf).map(SemanticNode::getLeafTextBlock).collect(new TextBlockCollector());
textBlock = streamAllSubNodes().filter(SemanticNode::isLeaf)
.map(SemanticNode::getLeafTextBlock)
.collect(new TextBlockCollector());
}
return textBlock;
}
@@ -12,6 +12,7 @@ import java.util.Set;
import java.util.stream.Collectors;
import java.util.stream.Stream;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.LayoutEngine;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.NodeType;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.Boundary;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.DocumentTree;
@@ -335,6 +336,23 @@ public interface SemanticNode {
}
/**
* returns the set of layoutengines.
*
* @return set of layoutengines.
*/
Set<LayoutEngine> getEngines();
/**
* adds a layoutengine to the set.
*/
default void addEngine(LayoutEngine engine) {
getEngines().add(engine);
}
/**
* Streams all children located directly underneath this node in the DocumentTree.
*
@@ -426,6 +444,7 @@ public interface SemanticNode {
/**
* TODO: this produces unwanted results for sections spanning multiple columns.
* Computes the Union of the bounding boxes of all children recursively.
*
* @return The union of the BoundingBoxes of all children
*/
private Map<Page, Rectangle2D> getBBoxFromChildren() {
@@ -12,6 +12,7 @@ import java.util.Set;
import java.util.stream.IntStream;
import java.util.stream.Stream;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.LayoutEngine;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.NodeType;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.DocumentTree;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.entity.RedactionEntity;
@@ -31,6 +32,8 @@ import lombok.experimental.FieldDefaults;
@FieldDefaults(level = AccessLevel.PRIVATE)
public class Table implements SemanticNode {
@Builder.Default
Set<LayoutEngine> engines = new HashSet<>(Set.of(LayoutEngine.ALGORITHM));
List<Integer> treeId;
DocumentTree documentTree;
@@ -45,6 +48,7 @@ public class Table implements SemanticNode {
@EqualsAndHashCode.Exclude
Map<Page, Rectangle2D> bBoxCache;
/**
* Streams all entities in this table, that appear in a row, which contains any of the provided strings.
*
@@ -53,8 +57,7 @@ public class Table implements SemanticNode {
*/
public Stream<RedactionEntity> streamEntitiesWhereRowContainsStringsIgnoreCase(List<String> strings) {
return IntStream.range(0, numberOfRows)
.boxed()
return IntStream.range(0, numberOfRows).boxed()
.filter(row -> rowContainsStringsIgnoreCase(row, strings))
.flatMap(this::streamRow)
.map(TableCell::getEntities)
@@ -71,8 +74,11 @@ public class Table implements SemanticNode {
*/
public boolean rowContainsStringsIgnoreCase(Integer row, List<String> strings) {
String rowText = streamRow(row).map(TableCell::getTextBlock).collect(new TextBlockCollector()).getSearchText().toLowerCase(Locale.ROOT);
return strings.stream().map(String::toLowerCase).allMatch(rowText::contains);
String rowText = streamRow(row).map(TableCell::getTextBlock)
.collect(new TextBlockCollector()).getSearchText().toLowerCase(Locale.ROOT);
return strings.stream()
.map(String::toLowerCase)
.allMatch(rowText::contains);
}
@@ -85,9 +91,13 @@ public class Table implements SemanticNode {
*/
public Stream<RedactionEntity> streamEntitiesWhereRowHasHeaderAndValue(String header, String value) {
List<Integer> vertebrateStudyCols = streamHeaders().filter(headerNode -> headerNode.containsString(header)).map(TableCell::getCol).toList();
List<Integer> vertebrateStudyCols = streamHeaders().filter(headerNode -> headerNode.containsString(header))
.map(TableCell::getCol)
.toList();
return streamTableCells().filter(tableCellNode -> vertebrateStudyCols.stream()
.anyMatch(vertebrateStudyCol -> getCell(tableCellNode.getRow(), vertebrateStudyCol).containsString(value))).map(TableCell::getEntities).flatMap(Collection::stream);
.anyMatch(vertebrateStudyCol -> getCell(tableCellNode.getRow(), vertebrateStudyCol).containsString(value)))
.map(TableCell::getEntities)
.flatMap(Collection::stream);
}
@@ -100,9 +110,13 @@ public class Table implements SemanticNode {
*/
public Stream<RedactionEntity> streamEntitiesWhereRowHasHeaderAndAnyValue(String header, List<String> values) {
List<Integer> colsWithHeader = streamHeaders().filter(headerNode -> headerNode.containsString(header)).map(TableCell::getCol).toList();
List<Integer> colsWithHeader = streamHeaders().filter(headerNode -> headerNode.containsString(header))
.map(TableCell::getCol)
.toList();
return streamTableCells().filter(tableCellNode -> colsWithHeader.stream()
.anyMatch(colWithHeader -> getCell(tableCellNode.getRow(), colWithHeader).containsAnyString(values))).map(TableCell::getEntities).flatMap(Collection::stream);
.anyMatch(colWithHeader -> getCell(tableCellNode.getRow(), colWithHeader).containsAnyString(values)))
.map(TableCell::getEntities)
.flatMap(Collection::stream);
}
@@ -114,12 +128,15 @@ public class Table implements SemanticNode {
*/
public Stream<RedactionEntity> streamEntitiesWhereRowContainsEntitiesOfType(List<String> types) {
List<Integer> rowsWithEntityOfType = IntStream.range(0, numberOfRows)
.boxed()
.filter(rowNumber -> streamEntityTypesInRow(rowNumber).anyMatch(existingType -> types.stream().anyMatch(typeToCheck -> typeToCheck.equals(existingType))))
List<Integer> rowsWithEntityOfType = IntStream.range(0, numberOfRows).boxed()
.filter(rowNumber -> streamEntityTypesInRow(rowNumber).anyMatch(existingType -> types.stream()
.anyMatch(typeToCheck -> typeToCheck.equals(existingType))))
.toList();
return rowsWithEntityOfType.stream().flatMap(this::streamRow).map(TableCell::getEntities).flatMap(Collection::stream);
return rowsWithEntityOfType.stream()
.flatMap(this::streamRow)
.map(TableCell::getEntities)
.flatMap(Collection::stream);
}
@@ -131,18 +148,24 @@ public class Table implements SemanticNode {
*/
public Stream<RedactionEntity> streamEntitiesWhereRowContainsNoEntitiesOfType(List<String> types) {
List<Integer> rowsWithNoEntityOfType = IntStream.range(0, numberOfRows)
.boxed()
.filter(rowNumber -> streamEntityTypesInRow(rowNumber).noneMatch(existingType -> types.stream().anyMatch(typeToCheck -> typeToCheck.equals(existingType))))
List<Integer> rowsWithNoEntityOfType = IntStream.range(0, numberOfRows).boxed()
.filter(rowNumber -> streamEntityTypesInRow(rowNumber).noneMatch(existingType -> types.stream()
.anyMatch(typeToCheck -> typeToCheck.equals(existingType))))
.toList();
return rowsWithNoEntityOfType.stream().flatMap(this::streamRow).map(TableCell::getEntities).flatMap(Collection::stream);
return rowsWithNoEntityOfType.stream()
.flatMap(this::streamRow)
.map(TableCell::getEntities)
.flatMap(Collection::stream);
}
private Stream<String> streamEntityTypesInRow(Integer rowNumber) {
return streamRow(rowNumber).map(TableCell::getEntities).flatMap(Collection::stream).map(RedactionEntity::getType).distinct();
return streamRow(rowNumber).map(TableCell::getEntities)
.flatMap(Collection::stream)
.map(RedactionEntity::getType)
.distinct();
}
@@ -159,7 +182,8 @@ public class Table implements SemanticNode {
throw new IllegalArgumentException(format("row %d, col %d is out of bounds for number of rows of %d and number of cols %d", row, col, numberOfRows, numberOfCols));
}
int idx = row * numberOfCols + col;
return (TableCell) documentTree.getEntryById(treeId).getChildren().get(idx).getNode();
return (TableCell) documentTree.getEntryById(treeId).getChildren()
.get(idx).getNode();
}
@@ -196,7 +220,8 @@ public class Table implements SemanticNode {
*/
public Stream<TableCell> streamCol(int col) {
return IntStream.range(0, numberOfRows).boxed().map(row -> getCell(row, col));
return IntStream.range(0, numberOfRows).boxed()
.map(row -> getCell(row, col));
}
@@ -208,9 +233,11 @@ public class Table implements SemanticNode {
*/
public Stream<TableCell> streamRow(int row) {
return IntStream.range(0, numberOfCols).boxed().map(col -> getCell(row, col));
return IntStream.range(0, numberOfCols).boxed()
.map(col -> getCell(row, col));
}
/**
* Streams all TableCells row-wise and filters them with header == true.
*
@@ -231,7 +258,8 @@ public class Table implements SemanticNode {
*/
public Stream<TableCell> streamHeadersForCell(int row, int col) {
return Stream.concat(streamRow(row), streamCol(col)).filter(TableCell::isHeader);
return Stream.concat(streamRow(row), streamCol(col))
.filter(TableCell::isHeader);
}
@@ -304,7 +332,9 @@ public class Table implements SemanticNode {
public TextBlock getTextBlock() {
if (textBlock == null) {
textBlock = streamAllSubNodes().filter(SemanticNode::isLeaf).map(SemanticNode::getLeafTextBlock).collect(new TextBlockCollector());
textBlock = streamAllSubNodes().filter(SemanticNode::isLeaf)
.map(SemanticNode::getLeafTextBlock)
.collect(new TextBlockCollector());
}
return textBlock;
}
@@ -315,6 +345,8 @@ public class Table implements SemanticNode {
return treeId.toString() + ": " + NodeType.TABLE + ": #cols: " + numberOfCols + ", #rows: " + numberOfRows + ", " + this.getTextBlock().buildSummary();
}
@Override
public Map<Page, Rectangle2D> getBBox() {
@@ -323,4 +355,5 @@ public class Table implements SemanticNode {
}
return bBoxCache;
}
}
@@ -7,6 +7,7 @@ import java.util.List;
import java.util.Map;
import java.util.Set;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.LayoutEngine;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.NodeType;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.DocumentTree;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.entity.RedactionEntity;
@@ -26,6 +27,8 @@ import lombok.experimental.FieldDefaults;
@FieldDefaults(level = AccessLevel.PRIVATE)
public class TableCell implements GenericSemanticNode {
@Builder.Default
Set<LayoutEngine> engines = new HashSet<>(Set.of(LayoutEngine.ALGORITHM));
List<Integer> treeId;
int row;
int col;
@@ -4,18 +4,21 @@ import java.awt.geom.Rectangle2D;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.ImageType;
import lombok.AllArgsConstructor;
import lombok.Data;
import lombok.NonNull;
import lombok.RequiredArgsConstructor;
@Data
@RequiredArgsConstructor
@AllArgsConstructor
public class ClassifiedImage {
@NonNull
private Rectangle2D position;
@NonNull
private ImageType imageType;
private boolean sourceByAi;
private boolean isAppendedToSection;
@NonNull
private boolean hasTransparency;
@@ -76,4 +76,14 @@ public class Cell extends Rectangle {
return this.getHeight() >= MIN_SIZE && this.getWidth() >= MIN_SIZE;
}
public boolean nearlyIntersects(Cell other) {
if (this.getHeight() <= 0 || other.getHeight() <= 0) {
return false;
}
double x0 = this.getX() + 2;
double y0 = this.getY() + 2;
return (other.x + other.width > x0 && other.y + other.height > y0 && other.x < x0 + this.getWidth() - 2 && other.y < y0 + this.getHeight() - 2);
}
}
@@ -1,14 +1,12 @@
package com.knecon.fforesight.service.layoutparser.processor.model.table;
import java.awt.geom.Point2D;
import java.awt.geom.Rectangle2D;
import java.util.ArrayList;
import java.util.Collections;
import java.util.HashSet;
import java.util.List;
import java.util.Set;
import java.util.TreeMap;
import java.util.stream.Collectors;
import com.knecon.fforesight.service.layoutparser.processor.model.AbstractPageBlock;
import com.knecon.fforesight.service.layoutparser.processor.model.PageBlockType;
@@ -21,7 +19,7 @@ import lombok.extern.slf4j.Slf4j;
@Slf4j
public class TablePageBlock extends AbstractPageBlock {
private final TreeMap<CellPosition, Cell> cells = new TreeMap<>();
private final TreeMap<CellPosition, Cell> cellTreeMap = new TreeMap<>();
private final int rotation;
@Getter
@@ -30,10 +28,14 @@ public class TablePageBlock extends AbstractPageBlock {
private int unrotatedRowCount;
private int unrotatedColCount;
private List<List<Cell>> rows;
@Getter
@Setter
private List<Cell> cells;
public TablePageBlock(List<Cell> cells, Rectangle area, int rotation) {
this.cells = cells;
addCells(cells);
minX = area.getLeft();
minY = area.getBottom();
@@ -50,6 +52,7 @@ public class TablePageBlock extends AbstractPageBlock {
return getColCount() == 0 || getRowCount() == 0;
}
public List<List<Cell>> getRows() {
if (rows == null) {
@@ -80,7 +83,10 @@ public class TablePageBlock extends AbstractPageBlock {
public int getColCount() {
return getRows().stream().mapToInt(List::size).max().orElse(0);
return getRows().stream()
.mapToInt(List::size)
.max()
.orElse(0);
}
@@ -120,7 +126,8 @@ public class TablePageBlock extends AbstractPageBlock {
List<Cell> cellsToTheTop = new ArrayList<>();
for (int i = 0; i < rowIndex; i++) {
try {
cellsToTheTop.add(rows.get(i).get(colIndex));
cellsToTheTop.add(rows.get(i)
.get(colIndex));
} catch (IndexOutOfBoundsException e) {
log.debug("No cell {} in row {}, ignoring.", colIndex, rowIndex);
}
@@ -135,7 +142,8 @@ public class TablePageBlock extends AbstractPageBlock {
if (lastHeaderCell != null) {
cell.getHeaderCells().add(lastHeaderCell);
}
if (!cell.getTextBlocks().isEmpty() && cell.getTextBlocks().get(0).getMostPopularWordStyle().equals("bold")) {
if (!cell.getTextBlocks().isEmpty() && cell.getTextBlocks()
.get(0).getMostPopularWordStyle().equals("bold")) {
cell.setHeaderCell(true);
}
}
@@ -151,7 +159,7 @@ public class TablePageBlock extends AbstractPageBlock {
for (int i = 0; i < unrotatedColCount; i++) { // rows
List<Cell> lastRow = new ArrayList<>();
for (int j = unrotatedRowCount - 1; j >= 0; j--) { // cols
Cell cell = cells.get(new CellPosition(j, i));
Cell cell = cellTreeMap.get(new CellPosition(j, i));
if (cell != null) {
lastRow.add(cell);
}
@@ -162,7 +170,7 @@ public class TablePageBlock extends AbstractPageBlock {
for (int i = unrotatedColCount - 1; i >= 0; i--) { // rows
List<Cell> lastRow = new ArrayList<>();
for (int j = 0; j < unrotatedRowCount; j++) { // cols
Cell cell = cells.get(new CellPosition(j, i));
Cell cell = cellTreeMap.get(new CellPosition(j, i));
if (cell != null) {
lastRow.add(cell);
}
@@ -173,7 +181,7 @@ public class TablePageBlock extends AbstractPageBlock {
for (int i = 0; i < unrotatedRowCount; i++) {
List<Cell> lastRow = new ArrayList<>();
for (int j = 0; j < unrotatedColCount; j++) {
Cell cell = cells.get(new CellPosition(i, j)); // JAVA_8 use getOrDefault()
Cell cell = cellTreeMap.get(new CellPosition(i, j)); // JAVA_8 use getOrDefault()
if (cell != null) {
lastRow.add(cell);
}
@@ -187,17 +195,6 @@ public class TablePageBlock extends AbstractPageBlock {
}
private void add(Cell chunk, int row, int col) {
unrotatedRowCount = Math.max(unrotatedRowCount, row + 1);
unrotatedColCount = Math.max(unrotatedColCount, col + 1);
CellPosition cp = new CellPosition(row, col);
cells.put(cp, chunk);
}
private void addCells(List<Cell> cells) {
if (cells.isEmpty()) {
@@ -206,11 +203,12 @@ public class TablePageBlock extends AbstractPageBlock {
cells.removeIf(cell -> cell.getWidth() < 1.1 || cell.getHeight() < 1.1);
List<List<Cell>> rowsOfCells = calculateStructure(cells);
List<List<Cell>> rowsOfCellsMatrix = calculateTableStructure(cells);
for (int i = 0; i < rowsOfCells.size(); i++) {
for (int j = 0; j < rowsOfCells.get(i).size(); j++) {
add(rowsOfCells.get(i).get(j), i, j);
for (int i = 0; i < rowsOfCellsMatrix.size(); i++) {
for (int j = 0; j < rowsOfCellsMatrix.get(i).size(); j++) {
addCellToRowAndCol(rowsOfCellsMatrix.get(i)
.get(j), i, j);
}
}
@@ -221,29 +219,36 @@ public class TablePageBlock extends AbstractPageBlock {
* Calculates the structure of the table. For spanning rows and columns multiple cells with the same values will be inserted.
*
* @param cells The found cells
* @return TablePageBlock Structure
* @return TablePageBlock Structure as a rows of cells matrix
*/
private List<List<Cell>> calculateStructure(List<Cell> cells) {
List<List<Cell>> matrix = new ArrayList<>();
private List<List<Cell>> calculateTableStructure(List<Cell> cells) {
if (cells.isEmpty()) {
return matrix;
return new ArrayList<>();
}
Set<Float> uniqueX = new HashSet<>();
Set<Float> uniqueY = new HashSet<>();
cells.stream().filter(c -> !c.getTextBlocks().isEmpty() || c.getHeight() > 3 && c.getWidth() > 3).forEach(c -> {
uniqueX.add(c.getLeft());
uniqueX.add(c.getRight());
uniqueY.add(c.getBottom());
uniqueY.add(c.getTop());
});
cells.stream()
.filter(c -> !c.getTextBlocks().isEmpty() || c.getHeight() > 3 && c.getWidth() > 3)
.forEach(c -> {
uniqueX.add(c.getLeft());
uniqueX.add(c.getRight());
uniqueY.add(c.getBottom());
uniqueY.add(c.getTop());
});
var sortedUniqueX = uniqueX.stream().sorted().toList();
var sortedUniqueY = uniqueY.stream().sorted().toList();
var sortedUniqueX = uniqueX.stream()
.sorted()
.toList();
var sortedUniqueY = uniqueY.stream()
.sorted()
.toList();
List<List<Cell>> rowsOfCells = new ArrayList<>();
Float prevY = null;
for (Float y : sortedUniqueY) {
List<Cell> row = new ArrayList<>();
@@ -254,42 +259,81 @@ public class TablePageBlock extends AbstractPageBlock {
if (prevY != null && prevX != null) {
var cell = new Cell(new Point2D.Float(prevX, prevY), new Point2D.Float(x, y));
var intersectionCell = cells.stream().filter(c -> intersects(cell, c)).findFirst();
intersectionCell.ifPresent(value -> cell.getTextBlocks().addAll(value.getTextBlocks()));
if (cell.hasMinimumSize()) {
cells.stream()
.filter(cell::nearlyIntersects)
.forEach(intersectingCell -> cell.getTextBlocks().addAll(intersectingCell.getTextBlocks()));
row.add(cell);
}
}
prevX = x;
}
if (prevY != null && prevX != null && !row.isEmpty()) {
matrix.add(row);
// exclude empty rows and rows where all text blocks are empty
if (prevY != null && prevX != null && !row.isEmpty() && !row.stream()
.allMatch(cell -> cell.getTextBlocks().isEmpty())) {
rowsOfCells.add(row);
}
prevY = y;
}
Collections.reverse(matrix);
Collections.reverse(rowsOfCells);
return matrix;
}
public boolean intersects(Cell cell1, Cell cell2) {
if (cell1.getHeight() <= 0 || cell2.getHeight() <= 0) {
return false;
// now cells are removed which are part of a column without any text blocks
// this is done by first computing the inverse matrix which contains call columns of cells
// then the column indices that have to be removed are determined
List<List<Cell>> columnsOfCells = new ArrayList<>();
int maxRowLength = rowsOfCells.stream()
.map(List::size)
.max(java.util.Comparator.naturalOrder())
.orElse(0);
for (int i = 0; i < maxRowLength; i++) {
columnsOfCells.add(new ArrayList<>());
}
double x0 = cell1.getX() + 2;
double y0 = cell1.getY() + 2;
return (cell2.x + cell2.width > x0 &&
cell2.y + cell2.height > y0 &&
cell2.x < x0 + cell1.getWidth() -2 &&
cell2.y < y0 + cell1.getHeight() -2);
for (List<Cell> row : rowsOfCells) {
for (int j = 0; j < row.size(); j++) {
columnsOfCells.get(j).add(row.get(j));
}
}
List<Integer> columnIndicesToRemove = new ArrayList<>();
int columnIndex = 0;
for (List<Cell> col : columnsOfCells) {
if (col.stream()
.allMatch(cell -> cell.getTextBlocks().isEmpty())) {
columnIndicesToRemove.add(columnIndex);
}
columnIndex++;
}
columnIndicesToRemove.sort(Collections.reverseOrder());
// update all rows so that the values of the empty columns get removed
var rowsOfCellsBefore = new ArrayList<>(rowsOfCells);
rowsOfCells = new ArrayList<>();
for (List<Cell> row : rowsOfCellsBefore) {
var updatedRow = new ArrayList<>(row);
columnIndicesToRemove.forEach(idxToRemove -> updatedRow.remove(updatedRow.get(idxToRemove)));
rowsOfCells.add(updatedRow);
}
return rowsOfCells;
}
private void addCellToRowAndCol(Cell cell, int row, int col) {
unrotatedRowCount = Math.max(unrotatedRowCount, row + 1);
unrotatedColCount = Math.max(unrotatedColCount, col + 1);
CellPosition cp = new CellPosition(row, col);
cellTreeMap.put(cp, cell);
}
@Override
public String getText() {
@@ -314,7 +358,7 @@ public class TablePageBlock extends AbstractPageBlock {
if (!first) {
sb.append("\n");
}
sb.append('\"').append(textBlock.getText().replaceAll("\"", "\\\"")).append('\"');
sb.append('\"').append(textBlock.getText().replaceAll("\"", "\"")).append('\"');
first = false;
}
}
@@ -328,8 +372,6 @@ public class TablePageBlock extends AbstractPageBlock {
}
public String getTextAsHtml() {
StringBuilder sb = new StringBuilder();
@@ -0,0 +1,92 @@
package com.knecon.fforesight.service.layoutparser.processor.python_api.adapter;
import java.awt.geom.Rectangle2D;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import org.springframework.stereotype.Service;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.ImageType;
import com.knecon.fforesight.service.layoutparser.processor.model.image.ClassifiedImage;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.VisualLayoutParsingBox;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.VisualLayoutParsingResponse;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.VisualLayoutParsingResult;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
@Service
@RequiredArgsConstructor
@Slf4j
public class VisualLayoutParsingAdapter {
private static String SIGNATURES = "signature";
public Map<Integer, List<VisualLayoutParsingResult>> buildExtractedTablesPerPage(VisualLayoutParsingResponse visualLayoutParsingResponse) {
Map<Integer, List<VisualLayoutParsingResult>> tableCells = new HashMap<>();
visualLayoutParsingResponse.getData()
.forEach(tableData -> tableCells.computeIfAbsent(tableData.getPage_idx(), tableCell -> new ArrayList<>()).addAll(convertTableCells(tableData.getBoxes())));
return tableCells;
}
public Map<Integer, List<ClassifiedImage>> buildExtractedSignaturesPerPage(VisualLayoutParsingResponse visualLayoutParsingResponse) {
Map<Integer, List<ClassifiedImage>> signatures = new HashMap<>();
if (visualLayoutParsingResponse.getData() != null) {
visualLayoutParsingResponse.getData()
.forEach(tableData -> signatures.computeIfAbsent(tableData.getPage_idx() + 1, tableCell -> new ArrayList<>())
.addAll(convertSignatures(tableData.getPage_idx(), tableData.getBoxes())));
}
return signatures;
}
public List<VisualLayoutParsingResult> convertTableCells(List<VisualLayoutParsingBox> tableObjects) {
List<VisualLayoutParsingResult> parsedTableCells = new ArrayList<>();
tableObjects.stream().forEach(t -> {
VisualLayoutParsingResult result = new VisualLayoutParsingResult();
result.setX0(t.getBox().getX1());
result.setX1(t.getBox().getX2());
result.setY0(t.getBox().getY1());
result.setY1(t.getBox().getY2());
result.setWidth(result.getX1() - result.getX0());
result.setHeight(result.getY1() - result.getY0());
result.setLabel(t.getLabel());
parsedTableCells.add(result);
});
return parsedTableCells;
}
public List<ClassifiedImage> convertSignatures(int pageNumber, List<VisualLayoutParsingBox> tableObjects) {
List<ClassifiedImage> signatures = new ArrayList<>();
tableObjects.stream().forEach(t -> {
if (t.getLabel().equals(SIGNATURES)) {
ClassifiedImage signature = new ClassifiedImage(new Rectangle2D.Float(t.getBox().getX1(),
t.getBox().getY1(),
t.getBox().getX2() - t.getBox().getX1(),
t.getBox().getY2() - t.getBox().getY1()), ImageType.SIGNATURE, true, false, false, pageNumber);
signatures.add(signature);
}
});
return signatures;
}
}
@@ -0,0 +1,18 @@
package com.knecon.fforesight.service.layoutparser.processor.python_api.model.table;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@Builder
@NoArgsConstructor
@AllArgsConstructor
public class VisualLayoutParsingBox {
private VisualLayoutParsingBoxValue box;
private String label;
private float probability;
}
@@ -0,0 +1,19 @@
package com.knecon.fforesight.service.layoutparser.processor.python_api.model.table;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@Builder
@NoArgsConstructor
@AllArgsConstructor
public class VisualLayoutParsingBoxValue {
private float x1;
private float y1;
private float x2;
private float y2;
}
@@ -0,0 +1,21 @@
package com.knecon.fforesight.service.layoutparser.processor.python_api.model.table;
import java.util.List;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@Builder
@NoArgsConstructor
@AllArgsConstructor
public class VisualLayoutParsingData {
private int page_idx;
private List<VisualLayoutParsingBox> boxes;
}
@@ -0,0 +1,23 @@
package com.knecon.fforesight.service.layoutparser.processor.python_api.model.table;
import java.util.List;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@Builder
@NoArgsConstructor
@AllArgsConstructor
public class VisualLayoutParsingResponse {
private String dossierId;
private String fileId;
private String targetFileExtension;
private String responseFileExtension;
private String X_TENANT_ID;
private List<VisualLayoutParsingData> data;
}
@@ -0,0 +1,22 @@
package com.knecon.fforesight.service.layoutparser.processor.python_api.model.table;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@Builder
@NoArgsConstructor
@AllArgsConstructor
public class VisualLayoutParsingResult {
private float x0;
private float y0;
private float x1;
private float y1;
private float width;
private float height;
private String label;
}
@@ -25,7 +25,8 @@ import lombok.extern.slf4j.Slf4j;
@RequiredArgsConstructor
public class RulingCleaningService {
private static final float THRESHOLD = 6;
private static final float THRESHOLD_Y = 6;
private static final float THRESHOLD_X = 2;
public CleanRulings getCleanRulings(List<TableCells> tableCells, List<Ruling> rulings) {
@@ -81,7 +82,7 @@ public class RulingCleaningService {
for (Point2D p : points.subList(1, points.size() - 1)) {
List<Point2D> last = groupedPoints.get(groupedPoints.size() - 1);
if (Math.abs(p.getX() - last.get(0).getX()) < THRESHOLD) {
if (Math.abs(p.getX() - last.get(0).getX()) < THRESHOLD_X) {
groupedPoints.get(groupedPoints.size() - 1).add(p);
} else {
groupedPoints.add(new ArrayList<>(Collections.singletonList(p)));
@@ -108,7 +109,7 @@ public class RulingCleaningService {
for (Point2D p : points.subList(1, points.size() - 1)) {
List<Point2D> last = groupedPoints.get(groupedPoints.size() - 1);
if (Math.abs(p.getY() - last.get(0).getY()) < THRESHOLD) {
if (Math.abs(p.getY() - last.get(0).getY()) < THRESHOLD_Y) {
groupedPoints.get(groupedPoints.size() - 1).add(p);
} else {
groupedPoints.add(new ArrayList<>(Collections.singletonList(p)));
@@ -5,7 +5,6 @@ import java.util.ArrayList;
import java.util.Comparator;
import java.util.HashMap;
import java.util.HashSet;
import java.util.Iterator;
import java.util.List;
import java.util.Map;
import java.util.Set;
@@ -25,55 +24,62 @@ import com.knecon.fforesight.service.layoutparser.processor.utils.DoubleComparis
@Service
public class TableExtractionService {
private static final Comparator<Point2D> X_FIRST_POINT_COMPARATOR = (arg0, arg1) -> {
private static final int MAX_TABLE_OUTER_POINT_TOLERANCE = 10;
private static final int MAX_TABLE_CONTAINED_CELLS_WITH_TEXT = 1;
private static final float SPREADSHEET_AREA_TOLERANCE = 0.001f;
private static final Comparator<Point2D> X_FIRST_POINT_COMPARATOR = (point1, point2) -> {
int rv = 0;
float arg0X = DoubleComparisons.round(arg0.getX(), 2);
float arg0Y = DoubleComparisons.round(arg0.getY(), 2);
float arg1X = DoubleComparisons.round(arg1.getX(), 2);
float arg1Y = DoubleComparisons.round(arg1.getY(), 2);
float point1X = DoubleComparisons.round(point1.getX(), 2);
float point1Y = DoubleComparisons.round(point1.getY(), 2);
float point2X = DoubleComparisons.round(point2.getX(), 2);
float point2Y = DoubleComparisons.round(point2.getY(), 2);
if (arg0X > arg1X) {
if (point1X > point2X) {
rv = 1;
} else if (arg0X < arg1X) {
} else if (point1X < point2X) {
rv = -1;
} else if (arg0Y > arg1Y) {
} else if (point1Y > point2Y) {
rv = 1;
} else if (arg0Y < arg1Y) {
} else if (point1Y < point2Y) {
rv = -1;
}
return rv;
};
private static final Comparator<Point2D> POINT_COMPARATOR = (arg0, arg1) -> {
private static final Comparator<Point2D> Y_FIRST_POINT_COMPARATOR = (point1, point2) -> {
int rv = 0;
float arg0X = DoubleComparisons.round(arg0.getX(), 2);
float arg0Y = DoubleComparisons.round(arg0.getY(), 2);
float arg1X = DoubleComparisons.round(arg1.getX(), 2);
float arg1Y = DoubleComparisons.round(arg1.getY(), 2);
float point1X = DoubleComparisons.round(point1.getX(), 2);
float point1Y = DoubleComparisons.round(point1.getY(), 2);
float point2X = DoubleComparisons.round(point2.getX(), 2);
float point2Y = DoubleComparisons.round(point2.getY(), 2);
if (arg0Y > arg1Y) {
if (point1Y > point2Y) {
rv = 1;
} else if (arg0Y < arg1Y) {
} else if (point1Y < point2Y) {
rv = -1;
} else if (arg0X > arg1X) {
} else if (point1X > point2X) {
rv = 1;
} else if (arg0X < arg1X) {
} else if (point1X < point2X) {
rv = -1;
}
return rv;
};
private static final Comparator<Cell> CELL_SIZE_COMPARATOR = (cell1, cell2) -> {
public boolean contains(Cell cell, double x, double y, double w, double h) {
Double cell1Size = cell1.getHeight() * cell1.getWidth();
Double cell2Size = cell2.getHeight() * cell2.getWidth();
return cell1Size.compareTo(cell2Size);
};
if (cell.isEmpty() || w <= 0 || h <= 0) {
return false;
}
double x0 = cell.getX();
double y0 = cell.getY();
return (x >= x0 - 2 && y >= y0 - 2 && (x + w) <= x0 + cell.getWidth() + 2 && (y + h) <= y0 + cell.getHeight() + 2);
}
private static final Comparator<Rectangle> RECTANGLE_SIZE_COMPARATOR = (rect1, rect2) -> {
Double rect1Size = rect1.getHeight() * rect1.getWidth();
Double rect2Size = rect2.getHeight() * rect2.getWidth();
return rect1Size.compareTo(rect2Size);
};
/**
@@ -89,22 +95,18 @@ public class TableExtractionService {
* @param cleanRulings The lines used to build the table.
* @param page Page object that contains textblocks and statistics.
*/
public void extractTables(CleanRulings cleanRulings, ClassificationPage page) {
List<Cell> cells = findCells(cleanRulings.getHorizontal(), cleanRulings.getVertical());
List<TextPageBlock> toBeRemoved = new ArrayList<>();
// sort cells by size (height * width) ascending so that textBlocks are always assigned to the smallest cells that contain them
cells.sort(CELL_SIZE_COMPARATOR);
for (AbstractPageBlock abstractPageBlock : page.getTextBlocks()) {
TextPageBlock textBlock = (TextPageBlock) abstractPageBlock;
for (Cell cell : cells) {
if (cell.hasMinimumSize() && contains(cell,
textBlock.getPdfMinX(),
textBlock.getPdfMinY(),
textBlock.getPdfMaxX() - textBlock.getPdfMinX(),
textBlock.getPdfMaxY() - textBlock.getPdfMinY())) {
if (cell.hasMinimumSize() && doesCellContainTextBlock(cell, textBlock)) {
cell.addTextBlock(textBlock);
toBeRemoved.add(textBlock);
break;
}
}
@@ -114,39 +116,70 @@ public class TableExtractionService {
DoubleComparisons.sort(cells, Rectangle.ILL_DEFINED_ORDER);
List<Rectangle> spreadsheetAreas = findSpreadsheetsFromCells(cells);
// sort spreadsheetAreas by size (height * width) ascending so that cells are placed in the smallest tables first
// this way no cell duplication occurs when tables are contained in other tables and only the most inner table contains the cells
spreadsheetAreas.sort(RECTANGLE_SIZE_COMPARATOR);
List<TablePageBlock> tables = new ArrayList<>();
for (Rectangle area : spreadsheetAreas) {
List<Cell> overlappingCells = new ArrayList<>();
List<Cell> containedCells = new ArrayList<>();
for (Cell c : cells) {
if (c.hasMinimumSize() && c.intersects(area)) {
overlappingCells.add(c);
if (c.hasMinimumSize() && area.contains(c)) {
containedCells.add(c);
}
}
tables.add(new TablePageBlock(overlappingCells, area, page.getRotation()));
var containedCellsWithText = containedCells.stream()
.filter(cell -> !cell.getTextBlocks().isEmpty())
.count();
// verify if table would contain fewer cells with text than the threshold allows
if (containedCellsWithText >= MAX_TABLE_CONTAINED_CELLS_WITH_TEXT) {
tables.add(new TablePageBlock(containedCells, area, page.getRotation()));
cells.removeAll(containedCells);
}
}
for (TablePageBlock table : tables) {
int position = -1;
Iterator<AbstractPageBlock> itty = page.getTextBlocks().iterator();
while (itty.hasNext()) {
AbstractPageBlock textBlock = itty.next();
if (textBlock instanceof TextPageBlock ? table.containsBlock((TextPageBlock) textBlock) : table.contains(textBlock) && position == -1) {
position = page.getTextBlocks().indexOf(textBlock);
for (AbstractPageBlock pageBlock : page.getTextBlocks()) {
if (pageBlock instanceof TextPageBlock ? table.containsBlock((TextPageBlock) pageBlock) : table.contains(pageBlock) && position == -1) {
position = page.getTextBlocks().indexOf(pageBlock);
}
}
if (position != -1) {
page.getTextBlocks().add(position, table);
var toBeRemoved = table.getCells()
.stream()
.map(Cell::getTextBlocks)
.flatMap(List::stream)
.toList();
// remove text blocks from the page that were also added with the table (from its contained cells)
page.getTextBlocks().removeAll(toBeRemoved);
}
}
page.getTextBlocks().removeAll(toBeRemoved);
}
public List<Cell> findCells(List<Ruling> horizontalRulingLines, List<Ruling> verticalRulingLines) {
private boolean doesCellContainTextBlock(Cell cell, TextPageBlock textBlock) {
double x = textBlock.getPdfMinX();
double y = textBlock.getPdfMinY();
double w = textBlock.getPdfMaxX() - textBlock.getPdfMinX();
double h = textBlock.getPdfMaxY() - textBlock.getPdfMinY();
if (cell.isEmpty() || w <= 0 || h <= 0) {
return false;
}
double x0 = cell.getX();
double y0 = cell.getY();
return (x >= x0 - 2 && y >= y0 - 2 && (x + w) <= x0 + cell.getWidth() + 2 && (y + h) <= y0 + cell.getHeight() + 2);
}
private List<Cell> findCells(List<Ruling> horizontalRulingLines, List<Ruling> verticalRulingLines) {
// Fix for 211.pdf
for (Ruling r : horizontalRulingLines) {
@@ -160,7 +193,7 @@ public class TableExtractionService {
List<Cell> cellsFound = new ArrayList<>();
Map<Point2D, Ruling[]> intersectionPoints = Ruling.findIntersections(horizontalRulingLines, verticalRulingLines);
List<Point2D> intersectionPointsList = new ArrayList<>(intersectionPoints.keySet());
intersectionPointsList.sort(POINT_COMPARATOR);
intersectionPointsList.sort(Y_FIRST_POINT_COMPARATOR);
for (int i = 0; i < intersectionPointsList.size(); i++) {
Point2D topLeft = intersectionPointsList.get(i);
@@ -186,13 +219,14 @@ public class TableExtractionService {
continue;
}
for (Point2D yPoint : yPoints) {
// is there an horizontal edge b/w topLeft and yPoint ?
// is there a horizontal edge b/w topLeft and yPoint ?
if (!hv[0].equals(intersectionPoints.get(yPoint)[0])) {
continue;
}
Point2D btmRight = new Point2D.Float((float) yPoint.getX(), (float) xPoint.getY());
if (intersectionPoints.containsKey(btmRight) && intersectionPoints.get(btmRight)[0].equals(intersectionPoints.get(xPoint)[0]) && intersectionPoints.get(btmRight)[1].equals(
intersectionPoints.get(yPoint)[1])) {
if (intersectionPoints.containsKey(btmRight)
&& intersectionPoints.get(btmRight)[0].equals(intersectionPoints.get(xPoint)[0])
&& intersectionPoints.get(btmRight)[1].equals(intersectionPoints.get(yPoint)[1])) {
cellsFound.add(new Cell(topLeft, btmRight));
break outer;
}
@@ -214,7 +248,6 @@ public class TableExtractionService {
Set<Point2D> pointSet = new HashSet<>();
Map<Point2D, Point2D> edgesH = new HashMap<>();
Map<Point2D, Point2D> edgesV = new HashMap<>();
int i = 0;
for (Rectangle cell : cells) {
for (Point2D pt : cell.getPoints()) {
@@ -231,8 +264,9 @@ public class TableExtractionService {
pointsSortX.sort(X_FIRST_POINT_COMPARATOR);
// Y first sort
List<Point2D> pointsSortY = new ArrayList<>(pointSet);
pointsSortY.sort(POINT_COMPARATOR);
pointsSortY.sort(Y_FIRST_POINT_COMPARATOR);
int i = 0;
while (i < pointSet.size()) {
float currY = (float) pointsSortY.get(i).getY();
while (i < pointSet.size() && DoubleComparisons.feq(pointsSortY.get(i).getY(), currY)) {
@@ -257,7 +291,8 @@ public class TableExtractionService {
Point2D nextVertex;
while (!edgesH.isEmpty()) {
ArrayList<PolygonVertex> polygon = new ArrayList<>();
Point2D first = edgesH.keySet().iterator().next();
Point2D first = edgesH.keySet()
.iterator().next();
polygon.add(new PolygonVertex(first, Direction.HORIZONTAL));
edgesH.remove(first);
@@ -301,7 +336,14 @@ public class TableExtractionService {
bottom = (float) Math.max(bottom, pt.point.getY());
right = (float) Math.max(right, pt.point.getX());
}
rectangles.add(new Rectangle(top, left, right - left, bottom - top));
// do not add polygons with too many outer points as they are unlikely to be tables
if (poly.size() <= MAX_TABLE_OUTER_POINT_TOLERANCE) {
rectangles.add(new Rectangle(top - SPREADSHEET_AREA_TOLERANCE,
left - SPREADSHEET_AREA_TOLERANCE,
right - left + 2 * SPREADSHEET_AREA_TOLERANCE,
bottom - top + 2 * SPREADSHEET_AREA_TOLERANCE));
}
}
return rectangles;
@@ -7,19 +7,19 @@ import static java.util.stream.Collectors.toList;
import java.awt.geom.Rectangle2D;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.HashSet;
import java.util.LinkedList;
import java.util.List;
import java.util.Map;
import java.util.NoSuchElementException;
import java.util.Set;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.LayoutEngine;
import com.knecon.fforesight.service.layoutparser.processor.model.AbstractPageBlock;
import com.knecon.fforesight.service.layoutparser.processor.model.ClassificationDocument;
import com.knecon.fforesight.service.layoutparser.processor.model.ClassificationFooter;
import com.knecon.fforesight.service.layoutparser.processor.model.ClassificationHeader;
import com.knecon.fforesight.service.layoutparser.processor.model.ClassificationPage;
import com.knecon.fforesight.service.layoutparser.processor.model.image.ClassifiedImage;
import com.knecon.fforesight.service.layoutparser.processor.model.text.TextPageBlock;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.DocumentTree;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Document;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Footer;
@@ -31,6 +31,8 @@ import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Pa
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Paragraph;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Section;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.textblock.AtomicTextBlock;
import com.knecon.fforesight.service.layoutparser.processor.model.image.ClassifiedImage;
import com.knecon.fforesight.service.layoutparser.processor.model.text.TextPageBlock;
import com.knecon.fforesight.service.layoutparser.processor.utils.IdBuilder;
import com.knecon.fforesight.service.layoutparser.processor.utils.TextPositionOperations;
@@ -95,14 +97,17 @@ public class DocumentGraphFactory {
Rectangle2D position = image.getPosition();
Page page = context.getPage(image.getPage());
Image imageNode = Image.builder()
var imageBuilder = Image.builder()
.id(IdBuilder.buildId(Set.of(page), List.of(position)))
.imageType(image.getImageType())
.position(position)
.transparent(image.isHasTransparency())
.page(page)
.documentTree(context.getDocumentTree())
.build();
.documentTree(context.getDocumentTree());
if (image.isSourceByAi()) {
imageBuilder.engines(new HashSet<>(Set.of(LayoutEngine.AI)));
}
Image imageNode = imageBuilder.build();
page.getMainBody().add(imageNode);
List<Integer> tocId = context.getDocumentTree().createNewChildEntryAndReturnId(section, imageNode);
@@ -80,6 +80,7 @@ public class DocumentDataMapper {
.treeId(toPrimitiveIntArray(entry.getTreeId()))
.children(entry.getChildren().stream().map(DocumentDataMapper::toEntryData).toList())
.type(entry.getType())
.engines(entry.getNode().getEngines())
.atomicBlockIds(atomicTextBlocks)
.pageNumbers(entry.getNode().getPages().stream().map(Page::getNumber).map(Integer::longValue).toArray(Long[]::new))
.properties(properties)
@@ -17,6 +17,7 @@ import java.util.stream.Stream;
import org.springframework.stereotype.Service;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.LayoutEngine;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.NodeType;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Document;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Page;
@@ -63,43 +64,53 @@ public class LayoutGridService {
@Observed(name = "ViewerDocumentService", contextualName = "create-viewer-document")
public void addLayoutGrid(File originFile, Document document, File destinationFile, boolean layerVisibilityDefaultValue) {
LayoutGrid layoutGrid = createLayoutGrid(document);
Visualizations layoutGrid = this.addLayoutGrid(document, layerVisibilityDefaultValue, false);
Visualizations visualLayoutGrid = this.addLayoutGrid(document, layerVisibilityDefaultValue, true);
viewerDocumentService.addVisualizationsOnPage(originFile,
destinationFile,
Visualizations.builder()
.layer(ContentStreams.KNECON_LAYOUT)
.visualizationsOnPages(layoutGrid.getVisualizationsPerPages())
.layerVisibilityDefaultValue(layerVisibilityDefaultValue)
.build());
viewerDocumentService.addVisualizationsOnPage(originFile, destinationFile, List.of(layoutGrid, visualLayoutGrid));
}
private LayoutGrid createLayoutGrid(Document document) {
@SneakyThrows
@Observed(name = "ViewerDocumentService", contextualName = "create-viewer-document")
public Visualizations addLayoutGrid(Document document, boolean layerVisibilityDefaultValue, boolean visualParsingGrid) {
LayoutGrid layoutGrid = createLayoutGrid(document, visualParsingGrid);
return Visualizations.builder()
.layer(visualParsingGrid ? ContentStreams.KNECON_VISUAL_PARSING : ContentStreams.KNECON_LAYOUT)
.visualizationsOnPages(layoutGrid.getVisualizationsPerPages())
.layerVisibilityDefaultValue(layerVisibilityDefaultValue)
.build();
}
private LayoutGrid createLayoutGrid(Document document, boolean visualParsingGrid) {
LayoutGrid layoutGrid = new LayoutGrid(document.getNumberOfPages());
document.streamAllSubNodes().forEach(semanticNode -> {
Color color = switch (semanticNode.getType()) {
case PARAGRAPH -> PARAGRAPH_COLOR;
case TABLE -> TABLE_COLOR;
case SECTION -> SECTION_COLOR;
case HEADLINE -> HEADLINE_COLOR;
case HEADER, FOOTER -> HEADER_COLOR;
case IMAGE -> IMAGE_COLOR;
default -> null;
};
if (isNotSectionOrTableCellOrDocument(semanticNode)) {
addAsRectangle(semanticNode, layoutGrid, color);
}
if (semanticNode.getType().equals(NodeType.SECTION)) {
addSection(semanticNode, layoutGrid, color);
}
if (semanticNode.getType().equals(NodeType.TABLE)) {
Table table = (Table) semanticNode;
addInnerTableLines(table, layoutGrid);
}
});
document.streamAllSubNodes()
.filter(node -> (node.getEngines().contains(LayoutEngine.AI) && visualParsingGrid) || (node.getEngines().contains(LayoutEngine.ALGORITHM) && !visualParsingGrid))
.forEach(semanticNode -> {
Color color = switch (semanticNode.getType()) {
case PARAGRAPH -> PARAGRAPH_COLOR;
case TABLE -> TABLE_COLOR;
case SECTION -> SECTION_COLOR;
case HEADLINE -> HEADLINE_COLOR;
case HEADER, FOOTER -> HEADER_COLOR;
case IMAGE -> IMAGE_COLOR;
default -> null;
};
if (isNotSectionOrTableCellOrDocument(semanticNode)) {
addAsRectangle(semanticNode, layoutGrid, color);
}
if (semanticNode.getType().equals(NodeType.SECTION)) {
addSection(semanticNode, layoutGrid, color);
}
if (semanticNode.getType().equals(NodeType.TABLE)) {
Table table = (Table) semanticNode;
addInnerTableLines(table, layoutGrid);
}
});
return layoutGrid;
}
@@ -30,8 +30,6 @@ public class TableMergingUtility {
if (consecutiveTable.getColCount() == originalTablePageBlock.getColCount() && !hasTableHeader(consecutiveTable) && outerBoundaryAlignsX(originalTablePageBlock,
consecutiveTable)) {
consecutiveTablesWithSameColCountAndHeaders.add(consecutiveTable);
} else {
break;
}
}
return Stream.concat(Stream.of(originalTablePageBlock), consecutiveTablesWithSameColCountAndHeaders.stream()).toList();
@@ -27,6 +27,7 @@ import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Do
import com.knecon.fforesight.service.layoutparser.processor.model.graph.textblock.TextBlock;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.image.ImageServiceResponse;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.TableServiceResponse;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.VisualLayoutParsingResponse;
import com.knecon.fforesight.service.layoutparser.processor.services.factory.DocumentGraphFactory;
import com.knecon.fforesight.service.layoutparser.processor.services.mapper.TaasDocumentDataMapper;
import com.knecon.fforesight.service.layoutparser.server.utils.AbstractTest;
@@ -50,6 +51,7 @@ public class BdrJsonBuildTest extends AbstractTest {
file,
new ImageServiceResponse(),
new TableServiceResponse(),
new VisualLayoutParsingResponse(),
file.toString()));
}
@@ -33,6 +33,7 @@ import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Do
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.SemanticNode;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.image.ImageServiceResponse;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.TableServiceResponse;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.VisualLayoutParsingResponse;
import com.knecon.fforesight.service.layoutparser.processor.services.factory.DocumentGraphFactory;
import com.knecon.fforesight.tenantcommons.TenantsClient;
@@ -98,6 +99,7 @@ public class HeadlinesGoldStandardIntegrationTest {
pdfFileResource.getFile(),
new ImageServiceResponse(),
new TableServiceResponse(),
new VisualLayoutParsingResponse(),
filePath));
var foundHeadlines = documentGraph.streamAllSubNodes()
@@ -16,6 +16,7 @@ import com.knecon.fforesight.service.layoutparser.internal.api.queue.LayoutParsi
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Document;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.image.ImageServiceResponse;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.TableServiceResponse;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.VisualLayoutParsingResponse;
import com.knecon.fforesight.service.layoutparser.processor.services.factory.DocumentGraphFactory;
import com.knecon.fforesight.service.layoutparser.processor.services.mapper.DocumentDataMapper;
import com.knecon.fforesight.service.layoutparser.server.utils.BuildDocumentTest;
@@ -58,6 +59,7 @@ public class DocumentGraphJsonWritingTest extends BuildDocumentTest {
filename.toFile(),
new ImageServiceResponse(),
new TableServiceResponse(),
new VisualLayoutParsingResponse(),
filename.toFile().toString()));
DocumentData documentData = DocumentDataMapper.toDocumentData(documentGraph);
@@ -12,6 +12,7 @@ import com.knecon.fforesight.service.layoutparser.internal.api.queue.LayoutParsi
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Document;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.image.ImageServiceResponse;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.TableServiceResponse;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.VisualLayoutParsingResponse;
import com.knecon.fforesight.service.layoutparser.processor.services.factory.DocumentGraphFactory;
import com.knecon.fforesight.service.layoutparser.processor.services.visualization.LayoutGridService;
import com.knecon.fforesight.service.layoutparser.server.utils.BuildDocumentTest;
@@ -35,9 +36,10 @@ public class ViewerDocumentTest extends BuildDocumentTest {
Document document = buildGraph(fileName, LayoutParsingType.REDACT_MANAGER);
long start = System.currentTimeMillis();
layoutGridService.addLayoutGrid(documentFile, document, new File(tmpFileName), true);
System.out.printf("Total time: %.2fs%n", ((float) (System.currentTimeMillis() - start)) / 1000);
System.out.printf("Total time: %.2fs%n", ((float) (System.currentTimeMillis() - start)) / 1000);
}
@Test
@Disabled
@SneakyThrows
@@ -51,7 +53,11 @@ public class ViewerDocumentTest extends BuildDocumentTest {
var tableResponse = mapper.readValue(new ClassPathResource(tableFileName).getInputStream(), TableServiceResponse.class);
var documentFile = new ClassPathResource(fileName).getFile();
var classificationDocument = layoutParsingPipeline.parseLayout(LayoutParsingType.DOCUMINE, documentFile, new ImageServiceResponse(), tableResponse, Path.of(fileName).getFileName().toFile().toString());
var classificationDocument = layoutParsingPipeline.parseLayout(LayoutParsingType.DOCUMINE,
documentFile,
new ImageServiceResponse(),
tableResponse,
new VisualLayoutParsingResponse(),Path.of(fileName).getFileName().toFile().toString());
ViewerDocumentService viewerDocumentService = new ViewerDocumentService(null);
LayoutGridService layoutGridService = new LayoutGridService(viewerDocumentService);
Document document = DocumentGraphFactory.buildDocumentGraph(classificationDocument);
@@ -60,3 +66,4 @@ public class ViewerDocumentTest extends BuildDocumentTest {
}
}
@@ -29,10 +29,9 @@ import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Im
import com.knecon.fforesight.service.layoutparser.processor.model.image.ClassifiedImage;
import com.knecon.fforesight.service.layoutparser.processor.model.table.Cell;
import com.knecon.fforesight.service.layoutparser.processor.model.table.TablePageBlock;
import com.knecon.fforesight.service.layoutparser.processor.python_api.adapter.CvTableParsingAdapter;
import com.knecon.fforesight.service.layoutparser.processor.python_api.adapter.ImageServiceResponseAdapter;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.image.ImageServiceResponse;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.TableServiceResponse;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.VisualLayoutParsingResponse;
import com.knecon.fforesight.service.layoutparser.processor.services.SectionsBuilderService;
import com.knecon.fforesight.service.layoutparser.processor.services.classification.RedactManagerClassificationService;
import com.knecon.fforesight.service.layoutparser.server.utils.AbstractTest;
@@ -50,12 +49,6 @@ public class PdfSegmentationServiceTest extends AbstractTest {
@Autowired
private RedactManagerClassificationService redactManagerClassificationService;
@Autowired
private CvTableParsingAdapter cvTableParsingAdapter;
@Autowired
private ImageServiceResponseAdapter imageServiceResponseAdapter;
@Autowired
private SectionsBuilderService sectionsBuilderService;
@@ -64,10 +57,11 @@ public class PdfSegmentationServiceTest extends AbstractTest {
public ClassificationDocument buildClassificationDocument(File originDocument, TableServiceResponse tableServiceResponse) {
ClassificationDocument classificationDocument = layoutParsingPipeline.parseLayout(LayoutParsingType.REDACT_MANAGER,
originDocument,
new ImageServiceResponse(),
tableServiceResponse,
"document");
originDocument,
new ImageServiceResponse(),
tableServiceResponse,
new VisualLayoutParsingResponse(),
"document");
redactManagerClassificationService.classifyDocument(classificationDocument);
@@ -87,11 +81,11 @@ public class PdfSegmentationServiceTest extends AbstractTest {
@Test
public void tablesToHtmlDebugger() throws IOException {
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/A20622A izRMS (CZ) fRR Part B9_Page185.pdf");
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/T5 VV-640252-Page16.pdf");
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
toHtml(document, "/tmp/A20622A izRMS (CZ) fRR Part B9_Page185.html");
toHtml(document, "/tmp/T5.html");
}
@@ -109,6 +103,7 @@ public class PdfSegmentationServiceTest extends AbstractTest {
}
@Disabled
@Test
public void testScanRotationBorderIsIgnored() throws IOException {
@@ -117,8 +112,16 @@ public class PdfSegmentationServiceTest extends AbstractTest {
var tableServiceResponse = objectMapper.readValue(cvTablesResource.getInputStream(), TableServiceResponse.class);
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile(), tableServiceResponse);
assertThat(document.getSections().stream().flatMap(paragraph -> paragraph.getTables().stream()).collect(Collectors.toList())).isNotEmpty();
var tables = document.getSections().stream().flatMap(paragraph -> paragraph.getTables().stream()).toList();
assertThat(document.getSections()
.stream()
.flatMap(paragraph -> paragraph.getTables()
.stream())
.collect(Collectors.toList())).isNotEmpty();
var tables = document.getSections()
.stream()
.flatMap(paragraph -> paragraph.getTables()
.stream())
.toList();
// Quality of the table parsing is not good, because the file is rotated at scanning.
// We only asset that the table border is not the page border.
@@ -140,12 +143,12 @@ public class PdfSegmentationServiceTest extends AbstractTest {
imageServiceResponse.getData()
.forEach(imageMetadata -> images.computeIfAbsent(imageMetadata.getPosition().getPageNumber(), x -> new ArrayList<>())
.add(new ClassifiedImage(new Rectangle2D.Double(imageMetadata.getPosition().getX1(),
imageMetadata.getPosition().getY1(),
imageMetadata.getGeometry().getWidth(),
imageMetadata.getGeometry().getHeight()),
ImageType.valueOf(imageMetadata.getClassification().getLabel().toUpperCase(Locale.ROOT)),
imageMetadata.isAlpha(),
imageMetadata.getPosition().getPageNumber())));
imageMetadata.getPosition().getY1(),
imageMetadata.getGeometry().getWidth(),
imageMetadata.getGeometry().getHeight()),
ImageType.valueOf(imageMetadata.getClassification().getLabel().toUpperCase(Locale.ROOT)),
imageMetadata.isAlpha(),
imageMetadata.getPosition().getPageNumber())));
System.out.println("object");
}
@@ -157,11 +160,22 @@ public class PdfSegmentationServiceTest extends AbstractTest {
ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Spanning Cells.pdf");
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
assertThat(document.getSections().stream().flatMap(paragraph -> paragraph.getTables().stream()).collect(Collectors.toList())).isNotEmpty();
TablePageBlock table = document.getSections().stream().flatMap(paragraph -> paragraph.getTables().stream()).collect(Collectors.toList()).get(0);
assertThat(document.getSections()
.stream()
.flatMap(paragraph -> paragraph.getTables()
.stream())
.collect(Collectors.toList())).isNotEmpty();
TablePageBlock table = document.getSections()
.stream()
.flatMap(paragraph -> paragraph.getTables()
.stream())
.toList()
.get(0);
assertThat(table.getColCount()).isEqualTo(6);
assertThat(table.getRowCount()).isEqualTo(13);
assertThat(table.getRows().stream().mapToInt(List::size).sum()).isEqualTo(6 * 13);
assertThat(table.getRows()
.stream()
.mapToInt(List::size).sum()).isEqualTo(6 * 13);
}
@@ -171,15 +185,37 @@ public class PdfSegmentationServiceTest extends AbstractTest {
ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Merge Table.pdf");
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
assertThat(document.getSections().stream().flatMap(paragraph -> paragraph.getTables().stream()).collect(Collectors.toList())).isNotEmpty();
TablePageBlock firstTable = document.getSections().stream().flatMap(paragraph -> paragraph.getTables().stream()).collect(Collectors.toList()).get(0);
assertThat(document.getSections()
.stream()
.flatMap(paragraph -> paragraph.getTables()
.stream())
.collect(Collectors.toList())).isNotEmpty();
TablePageBlock firstTable = document.getSections()
.stream()
.flatMap(paragraph -> paragraph.getTables()
.stream())
.toList()
.get(0);
assertThat(firstTable.getColCount()).isEqualTo(8);
assertThat(firstTable.getRowCount()).isEqualTo(1);
TablePageBlock secondTable = document.getSections().stream().flatMap(paragraph -> paragraph.getTables().stream()).collect(Collectors.toList()).get(1);
TablePageBlock secondTable = document.getSections()
.stream()
.flatMap(paragraph -> paragraph.getTables()
.stream())
.toList()
.get(1);
assertThat(secondTable.getColCount()).isEqualTo(8);
assertThat(secondTable.getRowCount()).isEqualTo(2);
List<List<Cell>> firstTableHeaderCells = firstTable.getRows().get(0).stream().map(Collections::singletonList).collect(Collectors.toList());
assertThat(secondTable.getRows().stream().allMatch(row -> row.stream().map(Cell::getHeaderCells).toList().equals(firstTableHeaderCells))).isTrue();
List<List<Cell>> firstTableHeaderCells = firstTable.getRows()
.get(0)
.stream()
.map(Collections::singletonList)
.collect(Collectors.toList());
assertThat(secondTable.getRows()
.stream()
.allMatch(row -> row.stream()
.map(Cell::getHeaderCells)
.toList().equals(firstTableHeaderCells))).isTrue();
}
@@ -189,15 +225,37 @@ public class PdfSegmentationServiceTest extends AbstractTest {
ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Merge Multi Page Table.pdf");
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
assertThat(document.getSections().stream().flatMap(paragraph -> paragraph.getTables().stream()).collect(Collectors.toList())).isNotEmpty();
TablePageBlock firstTable = document.getSections().stream().flatMap(paragraph -> paragraph.getTables().stream()).collect(Collectors.toList()).get(0);
assertThat(document.getSections()
.stream()
.flatMap(paragraph -> paragraph.getTables()
.stream())
.collect(Collectors.toList())).isNotEmpty();
TablePageBlock firstTable = document.getSections()
.stream()
.flatMap(paragraph -> paragraph.getTables()
.stream())
.toList()
.get(0);
assertThat(firstTable.getColCount()).isEqualTo(9);
assertThat(firstTable.getRowCount()).isEqualTo(5);
TablePageBlock secondTable = document.getSections().stream().flatMap(paragraph -> paragraph.getTables().stream()).collect(Collectors.toList()).get(1);
TablePageBlock secondTable = document.getSections()
.stream()
.flatMap(paragraph -> paragraph.getTables()
.stream())
.toList()
.get(1);
assertThat(secondTable.getColCount()).isEqualTo(9);
assertThat(secondTable.getRowCount()).isEqualTo(6);
List<List<Cell>> firstTableHeaderCells = firstTable.getRows().get(firstTable.getRowCount() - 1).stream().map(Cell::getHeaderCells).collect(Collectors.toList());
assertThat(secondTable.getRows().stream().allMatch(row -> row.stream().map(Cell::getHeaderCells).toList().equals(firstTableHeaderCells))).isTrue();
List<List<Cell>> firstTableHeaderCells = firstTable.getRows()
.get(firstTable.getRowCount() - 1)
.stream()
.map(Cell::getHeaderCells)
.collect(Collectors.toList());
assertThat(secondTable.getRows()
.stream()
.allMatch(row -> row.stream()
.map(Cell::getHeaderCells)
.toList().equals(firstTableHeaderCells))).isTrue();
}
@@ -207,19 +265,41 @@ public class PdfSegmentationServiceTest extends AbstractTest {
ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Rotated Table Headers.pdf");
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
assertThat(document.getSections().stream().flatMap(paragraph -> paragraph.getTables().stream()).collect(Collectors.toList())).isNotEmpty();
TablePageBlock firstTable = document.getSections().stream().flatMap(paragraph -> paragraph.getTables().stream()).collect(Collectors.toList()).get(0);
assertThat(document.getSections()
.stream()
.flatMap(paragraph -> paragraph.getTables()
.stream())
.collect(Collectors.toList())).isNotEmpty();
TablePageBlock firstTable = document.getSections()
.stream()
.flatMap(paragraph -> paragraph.getTables()
.stream())
.toList()
.get(0);
assertThat(firstTable.getColCount()).isEqualTo(8);
assertThat(firstTable.getRowCount()).isEqualTo(1);
TablePageBlock secondTable = document.getSections().stream().flatMap(paragraph -> paragraph.getTables().stream()).collect(Collectors.toList()).get(1);
TablePageBlock secondTable = document.getSections()
.stream()
.flatMap(paragraph -> paragraph.getTables()
.stream())
.toList()
.get(1);
assertThat(secondTable.getColCount()).isEqualTo(8);
assertThat(secondTable.getRowCount()).isEqualTo(6);
List<List<Cell>> firstTableHeaderCells = firstTable.getRows().get(0).stream().map(Collections::singletonList).collect(Collectors.toList());
assertThat(secondTable.getRows().stream().allMatch(row -> row.stream().map(Cell::getHeaderCells).toList().equals(firstTableHeaderCells))).isTrue();
List<List<Cell>> firstTableHeaderCells = firstTable.getRows()
.get(0)
.stream()
.map(Collections::singletonList)
.collect(Collectors.toList());
assertThat(secondTable.getRows()
.stream()
.allMatch(row -> row.stream()
.map(Cell::getHeaderCells)
.toList().equals(firstTableHeaderCells))).isTrue();
}
@Test // Non-sense test
@Test
public void testDoc56Page170() throws IOException {
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/56 Fludioxonil_RAR_12_Volume_3CA_B-7_2018-02-21_Page170.pdf");
@@ -230,8 +310,8 @@ public class PdfSegmentationServiceTest extends AbstractTest {
validateTable(document, 0, 1, 1, 0, 0);
validateTable(document, 1, 2, 2, 0, 0);
validateTable(document, 2, 6, 20, 0, 0);
validateTable(document, 3, 7, 31, 0, 0);
validateTable(document, 2, 4, 19, 12, 0);
validateTable(document, 3, 2, 12, 0, 0);
}
@@ -265,29 +345,30 @@ public class PdfSegmentationServiceTest extends AbstractTest {
validateTable(document, 0, 8, 8, 0, 0);
List<List<String>> values = Arrays.asList(Arrays.asList("Annex point Reference within DAR/RAR",
"Author, date",
"Study title",
"Analytical method Author, date, No.",
"Technique, LOQ of the method, validated working range",
"Method meets analytical validation criteria",
"Remarks (in case validation criteria are not met)",
"Acceptability of the method"),
Arrays.asList("Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies"),
Arrays.asList("CA 7.1.2.1.1 DAR (2009)",
"Evans P.G. 2001 TMJ4569B, VV-323245",
"Azoxystrobin Laboratory Degradation Study in Three Soil Types, Sampled from Holland and the United Kingdom",
"Method: RAM 269 Johnson R.I., Tummon O.J., Earl M. 1995 RJ1864B, VV-377731 Johnson R.I., Tummon O.J., Earl M. 1998 RAM 269/02, VV-124072 Johnson R.I., Tummon O.J., Earl M. 2000 RAM 269/03, VV-123986 Validation: Robinson N.J. 2001 TMJ4617B, VV-895845",
"LC-MS/MS LOQ: 0.01 mg/kg (R401553 (SYN50165 7), R402173 (SYN501114 )) or 0.02 mg/kg (azoxystrobin, R230310, R234886) Working range: 0.02-1.0 or 0.01-0.5 mg/kg (depending on analyte) Other supporting quantificati on methods: HPLC-UV GC-MSD",
"Y",
"N/A",
"Y"));
"Author, date",
"Study title",
"Analytical method Author, date, No.",
"Technique, LOQ of the method, validated working range",
"Method meets analytical validation criteria",
"Remarks (in case validation criteria are not met)",
"Acceptability of the method"),
Arrays.asList(
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies"),
Arrays.asList("CA 7.1.2.1.1 DAR (2009)",
"Evans P.G. 2001 TMJ4569B, VV-323245",
"Azoxystrobin Laboratory Degradation Study in Three Soil Types, Sampled from Holland and the United Kingdom",
"Method: RAM 269 Johnson R.I., Tummon O.J., Earl M. 1995 RJ1864B, VV-377731 Johnson R.I., Tummon O.J., Earl M. 1998 RAM 269/02, VV-124072 Johnson R.I., Tummon O.J., Earl M. 2000 RAM 269/03, VV-123986 Validation: Robinson N.J. 2001 TMJ4617B, VV-895845",
"LC-MS/MS LOQ: 0.01 mg/kg (R401553 (SYN50165 7), R402173 (SYN501114 )) or 0.02 mg/kg (azoxystrobin, R230310, R234886) Working range: 0.02-1.0 or 0.01-0.5 mg/kg (depending on analyte) Other supporting quantificati on methods: HPLC-UV GC-MSD",
"Y",
"N/A",
"Y"));
validateTable(document, 0, values);
@@ -579,10 +660,109 @@ public class PdfSegmentationServiceTest extends AbstractTest {
}
@Test
public void testT0() throws IOException {
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/T0 TableWithMergedCells.pdf");
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
validateTableSize(document, 1);
validateTable(document, 0, 6, 8, 0, 0);
}
@Test
public void testT1() throws IOException {
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/T1 MultipleNestedTable.pdf");
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
validateTableSize(document, 4);
validateTable(document, 0, 3, 3, 0, 0);
validateTable(document, 1, 3, 5, 2, 0);
validateTable(document, 2, 3, 3, 1, 0);
validateTable(document, 3, 3, 3, 0, 0);
}
@Test
public void testT2() throws IOException {
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/T2 MultipleTables.pdf");
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
validateTableSize(document, 6);
validateTable(document, 0, 5, 5, 0, 0);
validateTable(document, 1, 5, 6, 0, 0);
validateTable(document, 2, 5, 5, 0, 0);
validateTable(document, 3, 5, 5, 0, 0);
validateTable(document, 4, 5, 5, 0, 0);
validateTable(document, 5, 5, 5, 0, 0);
}
@Test
public void testT3() throws IOException {
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/T3 S-Meto_Page29.pdf");
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
validateTableSize(document, 1);
validateTable(document, 0, 6, 5, 0, 0);
}
@Test
public void testT4() throws IOException {
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/T4 138 IDD0000261736_Page16.pdf");
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
validateTableSize(document, 1);
validateTable(document, 0, 5, 8, 1, 0);
}
@Test
public void testT5() throws IOException {
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/T5 VV-640252-Page16.pdf");
ClassificationDocument document = buildClassificationDocument(pdfFileResource.getFile());
validateTableSize(document, 6);
validateTable(document, 0, 1, 1, 0, 0);
validateTable(document, 1, 1, 1, 0, 0);
validateTable(document, 2, 1, 1, 0, 0);
validateTable(document, 3, 1, 1, 0, 0);
validateTable(document, 4, 1, 1, 0, 0);
validateTable(document, 5, 1, 1, 0, 0);
}
@SneakyThrows
private void toHtml(ClassificationDocument document, String filename) {
var tables = document.getSections().stream().flatMap(paragraph -> paragraph.getTables().stream()).toList();
var tables = document.getSections()
.stream()
.flatMap(paragraph -> paragraph.getTables()
.stream())
.toList();
StringBuilder sb = new StringBuilder();
int currentPage = 1;
@@ -603,9 +783,19 @@ public class PdfSegmentationServiceTest extends AbstractTest {
private void validateTable(ClassificationDocument document, int tableIndex, int colCount, int rowCount, int emptyCellsCountCorrect, int emptyCellsCountIncorrect) {
TablePageBlock table = document.getSections().stream().flatMap(paragraph -> paragraph.getTables().stream()).toList().get(tableIndex);
TablePageBlock table = document.getSections()
.stream()
.flatMap(paragraph -> paragraph.getTables()
.stream())
.toList()
.get(tableIndex);
List<List<Cell>> rows = table.getRows();
int emptyCellsFoundFound = rows.stream().flatMap(List::stream).toList().stream().filter(f -> f.toString().equals("")).toList().size();
int emptyCellsFoundFound = rows.stream()
.flatMap(List::stream)
.toList()
.stream()
.filter(f -> f.toString().isEmpty())
.toList().size();
for (List<Cell> row : table.getRows()) {
row.forEach(r -> System.out.println(r.toString()));
@@ -620,11 +810,20 @@ public class PdfSegmentationServiceTest extends AbstractTest {
private void validateTable(ClassificationDocument document, int tableIndex, List<List<String>> values) {
TablePageBlock table = document.getSections().stream().flatMap(paragraph -> paragraph.getTables().stream()).toList().get(tableIndex);
TablePageBlock table = document.getSections()
.stream()
.flatMap(paragraph -> paragraph.getTables()
.stream())
.toList()
.get(tableIndex);
List<List<Cell>> rows = table.getRows();
List<Cell> rowsFlattened = rows.stream().flatMap(List::stream).toList();
List<String> valuesFlattened = values.stream().flatMap(List::stream).toList();
List<Cell> rowsFlattened = rows.stream()
.flatMap(List::stream)
.toList();
List<String> valuesFlattened = values.stream()
.flatMap(List::stream)
.toList();
for (int i = 0; i < valuesFlattened.size(); i++) {
Cell cell = rowsFlattened.get(i);
@@ -637,7 +836,11 @@ public class PdfSegmentationServiceTest extends AbstractTest {
private void validateTableSize(ClassificationDocument document, int tableSize) {
assertThat(document.getSections().stream().flatMap(paragraph -> paragraph.getTables().stream()).toList().size()).isEqualTo(tableSize);
assertThat(document.getSections()
.stream()
.flatMap(paragraph -> paragraph.getTables()
.stream())
.toList().size()).isEqualTo(tableSize);
}
@@ -21,15 +21,14 @@ import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Ta
import com.knecon.fforesight.service.layoutparser.processor.model.table.CleanRulings;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.image.ImageServiceResponse;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.TableServiceResponse;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.VisualLayoutParsingResponse;
import com.knecon.fforesight.service.layoutparser.processor.services.PageContentExtractor;
import com.knecon.fforesight.service.layoutparser.processor.services.RulingCleaningService;
import com.knecon.fforesight.service.layoutparser.processor.services.factory.DocumentGraphFactory;
import com.knecon.fforesight.service.layoutparser.processor.services.mapper.DocumentDataMapper;
import com.knecon.fforesight.service.layoutparser.processor.services.mapper.PropertiesMapper;
import com.knecon.fforesight.service.layoutparser.processor.services.visualization.LayoutGridService;
import com.knecon.fforesight.service.layoutparser.server.utils.BuildDocumentTest;
import com.knecon.fforesight.service.layoutparser.server.utils.visualizations.PdfDraw;
import com.knecon.fforesight.service.viewerdoc.service.ViewerDocumentService;
import lombok.SneakyThrows;
@@ -57,9 +56,6 @@ public class RulingCleaningServiceTest extends BuildDocumentTest {
@SneakyThrows
public void testTableExtraction() {
ViewerDocumentService viewerDocumentService = new ViewerDocumentService(null);
LayoutGridService layoutGridService = new LayoutGridService(viewerDocumentService);
ClassPathResource resource = new ClassPathResource("files");
List<String> pdfFileNames = Files.walk(resource.getFile().toPath())
.filter(path -> path.getFileName().toString().endsWith(".pdf"))
@@ -67,8 +63,8 @@ public class RulingCleaningServiceTest extends BuildDocumentTest {
.map(Path::toString)
.toList();
for (int i = 0; i < pdfFileNames.size(); i++) {
writeJsons(Path.of(pdfFileNames.get(i)));
for (String pdfFileName : pdfFileNames) {
writeJsons(Path.of(pdfFileName));
}
}
@@ -80,21 +76,23 @@ public class RulingCleaningServiceTest extends BuildDocumentTest {
filename.toFile(),
new ImageServiceResponse(),
new TableServiceResponse(),
new VisualLayoutParsingResponse(),
filename.toFile().toString()));
Document documentGraphAfter = DocumentGraphFactory.buildDocumentGraph(layoutParsingPipeline.parseLayout(LayoutParsingType.REDACT_MANAGER,
filename.toFile(),
new ImageServiceResponse(),
new TableServiceResponse(),
new VisualLayoutParsingResponse(),
filename.toFile().toString()));
DocumentData documentDataBefore = DocumentDataMapper.toDocumentData(documentGraphBefore);
DocumentData documentDataAfter = DocumentDataMapper.toDocumentData(documentGraphAfter);
if (!compareStructures(documentDataBefore.getDocumentStructure(), documentDataAfter.getDocumentStructure(), filename.getFileName().toString())) {
String tmpFileNameBefore = "C:/Users/YANNIK~1/AppData/Local/Temp/before." + filename.getFileName().toString();
if (!compareStructures(documentDataBefore.getDocumentStructure(), documentDataAfter.getDocumentStructure())) {
String tmpFileNameBefore = "/tmp/before." + filename.getFileName().toString();
try (PDDocument pdDocument = Loader.loadPDF(filename.toFile())) {
PdfDraw.drawDocumentGraph(pdDocument, documentGraphBefore);
pdDocument.save(tmpFileNameBefore);
}
String tmpFileNameAfter = "C:/Users/YANNIK~1/AppData/Local/Temp/after." + filename.getFileName().toString();
String tmpFileNameAfter = "/tmp/after." + filename.getFileName().toString();
try (PDDocument pdDocument = Loader.loadPDF(filename.toFile())) {
PdfDraw.drawDocumentGraph(pdDocument, documentGraphAfter);
pdDocument.save(tmpFileNameAfter);
@@ -105,9 +103,9 @@ public class RulingCleaningServiceTest extends BuildDocumentTest {
@SneakyThrows
private boolean compareStructures(DocumentStructure structure1, DocumentStructure structure2, String pdfName) {
private boolean compareStructures(DocumentStructure structure1, DocumentStructure structure2) {
List listStructure1 = structure1.streamAllEntries()
List<Table> listStructure1 = structure1.streamAllEntries()
.filter(entryData -> entryData.getType().equals(NodeType.TABLE))
.map(DocumentStructure.EntryData::getProperties)
.map(properties -> {
@@ -117,7 +115,7 @@ public class RulingCleaningServiceTest extends BuildDocumentTest {
})
.toList();
List listStructure2 = structure2.streamAllEntries()
List<Table> listStructure2 = structure2.streamAllEntries()
.filter(entryData -> entryData.getType().equals(NodeType.TABLE))
.map(DocumentStructure.EntryData::getProperties)
.map(properties -> {
@@ -128,8 +126,8 @@ public class RulingCleaningServiceTest extends BuildDocumentTest {
.toList();
for (int i = 0; i < listStructure1.size(); i++) {
Table tableNode1 = (Table) listStructure1.get(i);
Table tableNode2 = (Table) listStructure2.get(i);
Table tableNode1 = listStructure1.get(i);
Table tableNode2 = listStructure2.get(i);
if (tableNode1.getNumberOfRows() != tableNode2.getNumberOfRows() || tableNode1.getNumberOfCols() != tableNode2.getNumberOfCols()) {
return false;
}
@@ -20,6 +20,7 @@ import org.springframework.context.annotation.Import;
import org.springframework.context.annotation.Primary;
import org.springframework.core.io.ClassPathResource;
import org.springframework.test.context.junit.jupiter.SpringExtension;
import org.xmlunit.builder.Input;
import com.iqser.red.commons.jackson.ObjectMapperFactory;
import com.iqser.red.storage.commons.service.StorageService;
@@ -51,6 +52,8 @@ public abstract class AbstractTest {
private RabbitTemplate rabbitTemplate;
protected final static String ORIGIN_FILE_ID = "origin";
protected final static String VISUAL_LAYOUT_FILE = "visual";
protected final static String TABLE_FILE_ID = "table";
protected final static String IMAGE_FILE_ID = "image";
protected final static String STRUCTURE_FILE_ID = "structure";
@@ -96,7 +99,7 @@ public abstract class AbstractTest {
@SneakyThrows
protected LayoutParsingRequest prepareStorage(String file) {
return prepareStorage(file, "cv_table_parsing_response/empty.json", "image_service_response/empty.json");
return prepareStorage(file, "cv_table_parsing_response/empty.json", "image_service_response/empty.json","visual_layout_parsing_response/empty.json");
}
@@ -116,6 +119,7 @@ public abstract class AbstractTest {
.originFileStorageId(ORIGIN_FILE_ID)
.tablesFileStorageId(Optional.of(TABLE_FILE_ID))
.imagesFileStorageId(Optional.of(IMAGE_FILE_ID))
.visualLayoutParsingFileId(Optional.of(VISUAL_LAYOUT_FILE))
.structureFileStorageId(STRUCTURE_FILE_ID)
.textBlockFileStorageId(TEXT_FILE_ID)
.positionBlockFileStorageId(POSITION_FILE_ID)
@@ -136,6 +140,16 @@ public abstract class AbstractTest {
return prepareStorage(pdfFileResource.getInputStream(), cvServiceResponseFileResource.getInputStream(), imageInfoFileResource.getInputStream());
}
@SneakyThrows
protected LayoutParsingRequest prepareStorage(String file, String cvServiceResponseFile, String imageInfoFile, String visualLayoutParsingResponseFile) {
ClassPathResource pdfFileResource = new ClassPathResource(file);
ClassPathResource cvServiceResponseFileResource = new ClassPathResource(cvServiceResponseFile);
ClassPathResource imageInfoFileResource = new ClassPathResource(imageInfoFile);
ClassPathResource visualLayoutParsingResponseResource = new ClassPathResource(visualLayoutParsingResponseFile);
return prepareStorage(pdfFileResource.getInputStream(), cvServiceResponseFileResource.getInputStream(), imageInfoFileResource.getInputStream(), visualLayoutParsingResponseResource.getInputStream());
}
@SneakyThrows
protected LayoutParsingRequest prepareStorage(InputStream fileStream, InputStream cvServiceResponseFileStream, InputStream imageInfoStream) {
@@ -147,6 +161,17 @@ public abstract class AbstractTest {
return buildDefaultLayoutParsingRequest(LayoutParsingType.REDACT_MANAGER);
}
@SneakyThrows
protected LayoutParsingRequest prepareStorage(InputStream fileStream, InputStream cvServiceResponseFileStream, InputStream imageInfoStream, InputStream visualLayoutParsingResponseFileStream) {
storageService.storeObject(TenantContext.getTenantId(), IMAGE_FILE_ID, imageInfoStream);
storageService.storeObject(TenantContext.getTenantId(), TABLE_FILE_ID, cvServiceResponseFileStream);
storageService.storeObject(TenantContext.getTenantId(), ORIGIN_FILE_ID, fileStream);
storageService.storeObject(TenantContext.getTenantId(),VISUAL_LAYOUT_FILE,visualLayoutParsingResponseFileStream );
return buildDefaultLayoutParsingRequest(LayoutParsingType.REDACT_MANAGER);
}
@AfterEach
public void cleanupStorage() {
@@ -10,6 +10,7 @@ import com.knecon.fforesight.service.layoutparser.processor.LayoutParsingPipelin
import com.knecon.fforesight.service.layoutparser.processor.model.ClassificationDocument;
import com.knecon.fforesight.service.layoutparser.processor.model.graph.nodes.Document;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.TableServiceResponse;
import com.knecon.fforesight.service.layoutparser.processor.python_api.model.table.VisualLayoutParsingResponse;
import com.knecon.fforesight.service.layoutparser.processor.services.factory.DocumentGraphFactory;
import lombok.SneakyThrows;
@@ -25,7 +26,7 @@ public abstract class BuildDocumentTest extends AbstractTest {
File fileResource = new ClassPathResource(filename).getFile();
prepareStorage(filename);
return layoutParsingPipeline.parseLayout(layoutParsingType, fileResource, layoutParsingStorageService.getImagesFile(IMAGE_FILE_ID), new TableServiceResponse(), filename);
return layoutParsingPipeline.parseLayout(layoutParsingType, fileResource, layoutParsingStorageService.getImagesFile(IMAGE_FILE_ID), new TableServiceResponse(), new VisualLayoutParsingResponse(),filename);
}
@@ -0,0 +1,8 @@
{
"dossierId": "123",
"fileId": "123",
"targetFileExtension": "ORIGIN.pdf.gz",
"responseFileExtension": "EXTRACTED_TABLES.json.gz",
"data": [],
"X_TENANT_ID": ""
}
@@ -12,6 +12,8 @@ public class ContentStreams {
public static Identifier KNECON_LAYOUT = new Identifier("Layout grid", COSName.getPDFName("KNECON_LAYOUT"), true);
public static Identifier KNECON_VISUAL_PARSING = new Identifier("Layout grid - visual", COSName.getPDFName("KNECON_VISUAL_PARSING"), true);
public static Identifier KNECON_OCR = new Identifier("OCR", COSName.getPDFName("KNECON_OCR"), false);
public static Identifier KNECON_OCR_TEXT_DEBUG = new Identifier("OCR Text", COSName.getPDFName("KNECON_OCR_TEXT_DEBUG"), true);
@@ -24,7 +26,14 @@ public class ContentStreams {
public static Identifier ESCAPE_END = new Identifier("escape start", COSName.getPDFName("ESCAPE_END"), false);
public static List<Identifier> allContentStreams = List.of(KNECON_LAYOUT, KNECON_OCR, KNECON_OCR_BBOX_DEBUG, KNECON_OCR_TEXT_DEBUG, OTHER, ESCAPE_START, ESCAPE_END);
public static List<Identifier> allContentStreams = List.of(KNECON_LAYOUT,
KNECON_VISUAL_PARSING,
KNECON_OCR,
KNECON_OCR_BBOX_DEBUG,
KNECON_OCR_TEXT_DEBUG,
OTHER,
ESCAPE_START,
ESCAPE_END);
public record Identifier(String name, COSName cosName, boolean optionalContent) {