Compare commits
1
Commits
| Author | SHA1 | Date | |
|---|---|---|---|
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|
0894d73216 |
@@ -1,4 +1,4 @@
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FROM red/base-image:baseImageUser5
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FROM red/base-image:2.0.0
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COPY "libs/pdftron/OCRModuleLinux.tar.gz" .
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RUN tar xvzf OCRModuleLinux.tar.gz
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+18
-36
@@ -27,12 +27,9 @@ public class ImagePositionRetrievalService {
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private static final double TOLERANCE = 1e-1;
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// any image with smaller height and width than this gets thrown out, see everyPointInDashedLineIsImage.pdf
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private static final int PIXEL_THRESHOLD = 10;
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/**
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* Iterates over all elements in a PDF Document and retrieves the bounding box for each image, that is larger than the pixel threshold of 10 in either dimension.
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* Iterates over all elements in a PDF Document and retrieves the bounding box for each image,
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* Then it adjusts the bounding boxes for the page rotation.
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* If the mirrorY flag is set, the Y Coordinates are mirrored and moved up by the page height. This is required for PDFTrons OCRModule.
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*
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@@ -66,12 +63,7 @@ public class ImagePositionRetrievalService {
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Element element;
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while ((element = reader.next()) != null) {
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switch (element.getType()) {
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case Element.e_image, Element.e_inline_image -> {
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// see everyPointInDashedLineIsImage.pdf TestFile
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if (element.getImageHeight() > PIXEL_THRESHOLD || element.getImageWidth() > PIXEL_THRESHOLD) {
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imagePositions.addRect(toRotationAdjustedRect(element.getBBox(), currentPage, mirrorY));
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}
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}
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case Element.e_image, Element.e_inline_image -> imagePositions.addRect(toRotationAdjustedRect(element.getBBox(), currentPage, mirrorY));
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case Element.e_form -> {
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reader.formBegin();
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findImagePositionsOnPage(reader, imagePositions, currentPage, mirrorY);
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@@ -85,49 +77,39 @@ public class ImagePositionRetrievalService {
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@SneakyThrows
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public RectCollection mergeOverlappingRects(RectCollection imagePositions) {
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if (imagePositions.getNumRects() < 2) {
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if (imagePositions.getNumRects() == 1) {
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return imagePositions;
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}
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List<Rectangle2D> rectangleList = toSortedRectangleList(imagePositions);
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mergeRectangleList(rectangleList);
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rectangleList = mergeRectangleListRecursive(rectangleList, 0);
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return toRectCollection(rectangleList);
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}
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// Sometimes images are split up into stripes, here we merge the positions of aligned and intersecting rectangles into one larger rectangle
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private void mergeRectangleList(List<Rectangle2D> rectangleList) {
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private List<Rectangle2D> mergeRectangleListRecursive(List<Rectangle2D> rectangleList, int currentIdx) {
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for (int idx = 0; rectangleList.size() >= idx + 2; ) {
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var rect1 = rectangleList.get(idx);
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var rect2 = rectangleList.get(idx + 1);
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if (intersects(rect1, rect2) && isAlignedXOrY(rect1, rect2)) {
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rectangleList.remove(idx + 1);
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rectangleList.remove(idx);
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rectangleList.add(idx, rect1.createUnion(rect2));
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} else {
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++idx;
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}
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if (rectangleList.size() < currentIdx + 2) {
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return rectangleList;
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}
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}
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private boolean intersects(Rectangle2D rect1, Rectangle2D rect2) {
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return rect1.intersects(rect2.getMinX() - TOLERANCE, rect2.getMinY() - TOLERANCE, rect2.getWidth() + (2 * TOLERANCE), rect2.getHeight() + (2 * TOLERANCE));
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}
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private boolean isAlignedXOrY(Rectangle2D rect1, Rectangle2D rect2) {
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var rect1 = rectangleList.get(currentIdx);
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var rect2 = rectangleList.get(currentIdx + 1);
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boolean isAlignedX = Math.abs(rect1.getMinX() - rect2.getMinX()) < TOLERANCE && Math.abs(rect1.getMaxX() - rect2.getMaxX()) < TOLERANCE;
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boolean isAlignedY = Math.abs(rect1.getMinY() - rect2.getMinY()) < TOLERANCE && Math.abs(rect1.getMaxY() - rect2.getMaxY()) < TOLERANCE;
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boolean intersects = rect1.intersects(rect2.getMinX() - TOLERANCE, rect2.getMinY() - TOLERANCE, rect2.getWidth() + (2 * TOLERANCE), rect2.getHeight() + (2 * TOLERANCE));
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return isAlignedX || isAlignedY;
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if (intersects && (isAlignedX || isAlignedY)) {
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rectangleList.remove(currentIdx + 1);
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rectangleList.remove(currentIdx);
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rectangleList.add(currentIdx, rect1.createUnion(rect2));
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return mergeRectangleListRecursive(rectangleList, currentIdx);
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} else {
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return mergeRectangleListRecursive(rectangleList, currentIdx + 1);
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}
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}
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+2
-10
@@ -76,8 +76,6 @@ public class InvisibleElementRemovalService {
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Page page = iterator.next();
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visitedXObjIds.add(page.getSDFObj().getObjNum());
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InvisibleElementRemovalContext context = InvisibleElementRemovalContext.builder()
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.reader(reader)
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.clippingPathStack(new ClippingPathStack(page.getMediaBox()))
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@@ -91,7 +89,7 @@ public class InvisibleElementRemovalService {
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context.visitedXObjIds().clear();
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removeOverlappedElements(page, writer, context);
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// removeOverlappedElements(page, writer, context);
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}
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pdfDoc.save(out, SDFDoc.SaveMode.REMOVE_UNUSED, null);
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}
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@@ -223,14 +221,8 @@ public class InvisibleElementRemovalService {
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private void processPath(Element pathElement, ElementWriter writer, InvisibleElementRemovalContext context) throws PDFNetException {
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PathData pathData = pathElement.getPathData();
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if (pathData.getOperators().length == 0 && pathData.getPoints().length == 0) {
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writer.writeGStateChanges(pathElement);
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return;
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}
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GeneralPath linePath = convertToGeneralPath(pathData);
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GeneralPath linePath = convertToGeneralPath(pathElement.getPathData());
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//transform path to initial user space
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var ctm = pathElement.getCTM();
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+29
-74
@@ -1,10 +1,7 @@
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package com.iqser.red.service.ocr.v1.server.service;
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import static java.lang.String.format;
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import java.io.ByteArrayInputStream;
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import java.io.ByteArrayOutputStream;
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import java.io.IOException;
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import java.io.InputStream;
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import java.io.OutputStream;
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import java.util.Map;
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@@ -25,7 +22,6 @@ import com.pdftron.pdf.Page;
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import com.pdftron.pdf.RectCollection;
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import com.pdftron.sdf.SDFDoc;
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import io.micrometer.core.annotation.Timed;
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import lombok.RequiredArgsConstructor;
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import lombok.SneakyThrows;
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import lombok.extern.slf4j.Slf4j;
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@@ -62,22 +58,15 @@ public class OCRService {
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* @param fileId The file id
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* @param out OutputStream to write the file to
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*/
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@Timed("redactmanager_runOcrOnDocument")
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public void runOcrOnDocument(String dossierId, String fileId, OutputStream out) throws IOException {
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@SneakyThrows
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public void runOcrOnDocument(String dossierId, String fileId, OutputStream out) {
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try (ByteArrayOutputStream transferOutputStream = new ByteArrayOutputStream()) {
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try (InputStream fileStream = fileStorageService.getOriginalFileAsStream(dossierId, fileId)) {
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long start = System.currentTimeMillis();
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log.debug("Start invisible element removal for file with dossierId {} and fileId {}", dossierId, fileId);
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invisibleElementRemovalService.removeInvisibleElements(fileStream, transferOutputStream, false);
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long end = System.currentTimeMillis();
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log.debug("Invisible element removal successful for file with dossierId {} and fileId {}, took {}s", dossierId, fileId, format("%.1f", (end - start) / 1000.0));
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}
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try (InputStream transferInputStream = new ByteArrayInputStream(transferOutputStream.toByteArray())) {
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long start = System.currentTimeMillis();
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runOcr(transferInputStream, out, fileId);
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long end = System.currentTimeMillis();
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log.info("ocr successful for file with dossierId {} and fileId {}, took {}s", dossierId, fileId, format("%.1f", (end - start) / 1000.0));
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}
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}
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}
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@@ -90,26 +79,35 @@ public class OCRService {
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Map<Integer, RectCollection> pageIdToRectCollection = imagePositionRetrievalService.getImagePositionPerPage(pdfDoc, true);
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// Optimization:
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// When a page does not have a TextZone, PDFTron whites out the page. But, PDFTron scans it anyway, resulting in a longer runtime.
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// So, we need to remove pages without images.
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// Furthermore, creating a new document is *much* faster than reusing the same document and adding/removing pages one by one.
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// Therefore, we create a new Document with a single page for every page that contains text.
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OCROptions options = new OCROptions();
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PDFDoc ocrPageDoc = new PDFDoc();
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int numProcessedPages = 0;
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for (Integer pageId : pageIdToRectCollection.keySet()) {
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try {
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PDFDoc singlePagePdfDoc = extractSinglePagePdfDoc(pdfDoc, pageId);
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processOcr(pageIdToRectCollection, pageId, singlePagePdfDoc);
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// optimization by only scanning pages that contain images
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Page pdfPage = pdfDoc.getPage(pageId);
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pdfPage.setMediaBox(pdfPage.getCropBox()); // this line ensures the ocr text is placed correctly by PDFTron
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ocrPageDoc.pagePushBack(pdfPage);
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options.addTextZonesForPage(pageIdToRectCollection.get(pageId), 1);
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options.addLang(ENGLISH);
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options.addDPI(settings.getOcrDPI());
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OCRModule.processPDF(ocrPageDoc, options);
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++numProcessedPages;
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log.info("{}/{} Page {} done, OCR regions {}",
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numProcessedPages,
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pageIdToRectCollection.size(),
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pageId,
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getAllOcrTextZonesAsString(pageIdToRectCollection, pageId));
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StringBuilder zonesString = new StringBuilder();
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for (int j = 0; j < pageIdToRectCollection.get(pageId).getNumRects(); ++j) {
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var r = pageIdToRectCollection.get(pageId).getRectAt(j);
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zonesString.append(String.format("[lower left (%.1f|%.1f) upper right (%.1f|%.1f)]", r.getX1(), r.getY1(), r.getX2(), r.getY2()));
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}
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log.info("{}/{} Page {} done, OCR regions {}", numProcessedPages, pageIdToRectCollection.size(), pageId, zonesString);
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replaceOriginalPageWithOcrPage(pdfDoc, pageId, singlePagePdfDoc);
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singlePagePdfDoc.close();
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// re-adding OCR pages
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Page ocrPage = ocrPageDoc.getPage(1);
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pdfDoc.pageInsert(pdfDoc.getPageIterator(pageId), ocrPage);
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pdfDoc.pageRemove(pdfDoc.getPageIterator(pageId + 1));
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ocrPageDoc.pageRemove(ocrPageDoc.getPageIterator(1));
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rabbitTemplate.convertAndSend(MessagingConfiguration.OCR_STATUS_UPDATE_RESPONSE_QUEUE,
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objectMapper.writeValueAsString(OCRStatusUpdateResponse.builder()
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@@ -119,11 +117,13 @@ public class OCRService {
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.build()));
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} catch (PDFNetException e) {
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log.error("Failed to process page {}", pageId);
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log.error("failed to process page {}", pageId);
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throw new RuntimeException(e);
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}
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}
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ocrPageDoc.close();
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rabbitTemplate.convertAndSend(MessagingConfiguration.OCR_STATUS_UPDATE_RESPONSE_QUEUE,
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objectMapper.writeValueAsString(OCRStatusUpdateResponse.builder()
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.fileId(fileId)
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@@ -133,52 +133,7 @@ public class OCRService {
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.build()));
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Optimizer.optimize(pdfDoc);
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try {
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pdfDoc.save(out, SDFDoc.SaveMode.LINEARIZED, null);
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} catch (Exception e) {
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log.error("Processed File with fileId {} could not be saved", fileId);
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throw new RuntimeException(e);
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}
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}
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private void processOcr(Map<Integer, RectCollection> pageIdToRectCollection, Integer pageId, PDFDoc singlePagePdfDoc) throws PDFNetException {
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OCROptions options = new OCROptions();
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options.addTextZonesForPage(pageIdToRectCollection.get(pageId), 1);
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options.addLang(ENGLISH);
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options.addDPI(settings.getOcrDPI());
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OCRModule.processPDF(singlePagePdfDoc, options);
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}
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private static PDFDoc extractSinglePagePdfDoc(PDFDoc pdfDoc, Integer pageId) throws PDFNetException {
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PDFDoc singlePagePdfDoc = new PDFDoc();
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Page page = pdfDoc.getPage(pageId);
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page.setMediaBox(page.getCropBox()); // this line ensures the ocr text is placed correctly by PDFTron, see TestFile MediaBoxBiggerThanCropBox.pdf
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singlePagePdfDoc.pagePushBack(page);
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return singlePagePdfDoc;
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}
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private static void replaceOriginalPageWithOcrPage(PDFDoc pdfDoc, Integer pageId, PDFDoc ocrPageDoc) throws PDFNetException {
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Page ocrPage = ocrPageDoc.getPage(1);
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pdfDoc.pageInsert(pdfDoc.getPageIterator(pageId), ocrPage);
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pdfDoc.pageRemove(pdfDoc.getPageIterator(pageId + 1));
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}
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private static StringBuilder getAllOcrTextZonesAsString(Map<Integer, RectCollection> pageIdToRectCollection, Integer pageId) throws PDFNetException {
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StringBuilder zonesString = new StringBuilder();
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for (int j = 0; j < pageIdToRectCollection.get(pageId).getNumRects(); ++j) {
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var r = pageIdToRectCollection.get(pageId).getRectAt(j);
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zonesString.append(format("[lower left (%.1f|%.1f) upper right (%.1f|%.1f)]", r.getX1(), r.getY1(), r.getX2(), r.getY2()));
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}
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return zonesString;
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pdfDoc.save(out, SDFDoc.SaveMode.LINEARIZED, null);
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}
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}
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+9
-7
@@ -38,6 +38,7 @@ public class OcrMessageReceiver {
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DocumentRequest ocrRequestMessage = objectMapper.readValue(in, DocumentRequest.class);
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long start = System.currentTimeMillis();
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log.info("Start ocr for file with dossierId {} and fileId {}", ocrRequestMessage.getDossierId(), ocrRequestMessage.getFileId());
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setStatusOcrProcessing(ocrRequestMessage.getDossierId(), ocrRequestMessage.getFileId());
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@@ -47,18 +48,19 @@ public class OcrMessageReceiver {
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fileStorageService.storeUntouchedFile(ocrRequestMessage.getDossierId(), ocrRequestMessage.getFileId(), originalFile);
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}
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try (var transferStream = new ByteArrayOutputStream()) {
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ocrService.runOcrOnDocument(ocrRequestMessage.getDossierId(), ocrRequestMessage.getFileId(), transferStream);
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try (var inputStream = new ByteArrayInputStream(transferStream.toByteArray())) {
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fileStorageService.storeOriginalFile(ocrRequestMessage.getDossierId(), ocrRequestMessage.getFileId(), inputStream);
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}
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try (var out = new ByteArrayOutputStream()) {
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ocrService.runOcrOnDocument(ocrRequestMessage.getDossierId(), ocrRequestMessage.getFileId(), out);
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fileStorageService.storeOriginalFile(ocrRequestMessage.getDossierId(), ocrRequestMessage.getFileId(), new ByteArrayInputStream(out.toByteArray()));
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} catch (IOException e) {
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log.error("Failed to store file with dossierId {} and fileId {}", ocrRequestMessage.getDossierId(), ocrRequestMessage.getFileId());
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throw new RuntimeException(e);
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}
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fileStatusProcessingUpdateClient.ocrSuccessful(ocrRequestMessage.getDossierId(), ocrRequestMessage.getFileId());
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long end = System.currentTimeMillis();
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log.info("Successfully processed ocr for file with dossierId {} and fileId {}, took {}", ocrRequestMessage.getDossierId(), ocrRequestMessage.getFileId(), end - start);
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fileStatusProcessingUpdateClient.ocrSuccessful(ocrRequestMessage.getDossierId(), ocrRequestMessage.getFileId());
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}
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@@ -35,7 +35,7 @@ management:
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metrics.enabled: ${monitoring.enabled:false}
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prometheus.enabled: ${monitoring.enabled:false}
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health.enabled: true
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endpoints.web.exposure.include: prometheus, health, metrics
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endpoints.web.exposure.include: prometheus, health
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metrics.export.prometheus.enabled: ${monitoring.enabled:false}
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@@ -46,4 +46,4 @@ storage:
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endpoint: 'https://s3.amazonaws.com'
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backend: 's3'
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pdftron.license: ${PDFTRON_LICENSE}
|
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pdftron.license: ${PDFTRON_LICENSE}
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+9
-38
@@ -5,11 +5,8 @@ import static org.assertj.core.api.Assertions.assertThat;
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import java.io.FileInputStream;
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import java.io.FileOutputStream;
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import java.io.IOException;
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import java.io.InputStream;
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import java.util.ArrayList;
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import java.util.List;
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import java.util.concurrent.TimeUnit;
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import org.junit.jupiter.api.AfterEach;
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import org.junit.jupiter.api.BeforeEach;
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@@ -36,15 +33,12 @@ import com.iqser.red.service.ocr.v1.server.utils.FileSystemBackedStorageService;
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import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.dossier.file.FileType;
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import com.iqser.red.storage.commons.StorageAutoConfiguration;
|
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import com.iqser.red.storage.commons.service.StorageService;
|
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import com.pdftron.common.PDFNetException;
|
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import com.pdftron.pdf.OCRModule;
|
||||
import com.pdftron.pdf.PDFDoc;
|
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import com.pdftron.pdf.Page;
|
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import com.pdftron.pdf.PageIterator;
|
||||
import com.pdftron.pdf.TextExtractor;
|
||||
|
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import io.micrometer.prometheus.PrometheusMeterRegistry;
|
||||
import io.micrometer.prometheus.PrometheusTimer;
|
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import lombok.SneakyThrows;
|
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|
||||
@ExtendWith(SpringExtension.class)
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@@ -68,9 +62,6 @@ public class OcrServiceIntegrationTest {
|
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@Autowired
|
||||
private OCRService ocrService;
|
||||
|
||||
@Autowired
|
||||
private PrometheusMeterRegistry registry;
|
||||
|
||||
|
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@BeforeEach
|
||||
@SneakyThrows
|
||||
@@ -81,22 +72,6 @@ public class OcrServiceIntegrationTest {
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
@Disabled // OCRModule is not available on build server. If you want to run the test set the property at the top.
|
||||
public void testOCRMetrics() {
|
||||
|
||||
testOCR("Watermark");
|
||||
testOCR("Watermark");
|
||||
testOCR("Watermark");
|
||||
|
||||
var ocrOnDocumentMeter = registry.getMeters().stream().filter(m -> m.getId().getName().equalsIgnoreCase("redactmanager_runOcrOnDocument")).findAny();
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assertThat(ocrOnDocumentMeter.isPresent()).isTrue();
|
||||
PrometheusTimer timer = (PrometheusTimer) ocrOnDocumentMeter.get();
|
||||
assertThat(timer.count()).isEqualTo(3);
|
||||
assertThat(timer.mean(TimeUnit.SECONDS)).isGreaterThan(0.1);
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
@Disabled // OCRModule is not available on build server. If you want to run the test set the property at the top.
|
||||
public void testOcr() {
|
||||
@@ -157,34 +132,30 @@ public class OcrServiceIntegrationTest {
|
||||
private String testOCR(String fileName) {
|
||||
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/" + fileName + ".pdf");
|
||||
|
||||
var originId = FileStorageService.getStorageId("dossier", "file", FileType.ORIGIN);
|
||||
try (var fileStream = pdfFileResource.getInputStream()) {
|
||||
storageService.storeObject(originId, fileStream);
|
||||
}
|
||||
|
||||
try (var out = new FileOutputStream(getTemporaryDirectory() + "/" + fileName + ".pdf")) {
|
||||
ocrService.runOcrOnDocument("dossier", "file", out);
|
||||
}
|
||||
|
||||
System.out.println("File:" + getTemporaryDirectory() + "/" + fileName + ".pdf");
|
||||
try (var fileStream = new FileInputStream(getTemporaryDirectory() + "/" + fileName + ".pdf")) {
|
||||
return extractAllTextFromDocument(fileStream);
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
private static String extractAllTextFromDocument(InputStream fileStream) throws IOException, PDFNetException {
|
||||
|
||||
PDFDoc pdfDoc = new PDFDoc(fileStream);
|
||||
TextExtractor extractor = new TextExtractor();
|
||||
List<String> texts = new ArrayList<>();
|
||||
PDFDoc pdfDoc;
|
||||
|
||||
try (var fileStream = new FileInputStream(getTemporaryDirectory() + "/" + fileName + ".pdf")) {
|
||||
pdfDoc = new PDFDoc(fileStream);
|
||||
}
|
||||
PageIterator iterator = pdfDoc.getPageIterator();
|
||||
while (iterator.hasNext()) {
|
||||
Page page = iterator.next();
|
||||
extractor.begin(page);
|
||||
texts.add(extractor.getAsText());
|
||||
}
|
||||
|
||||
System.out.println("File:" + getTemporaryDirectory() + "/" + fileName + ".pdf");
|
||||
return String.join("\n", texts);
|
||||
}
|
||||
|
||||
@@ -192,7 +163,7 @@ public class OcrServiceIntegrationTest {
|
||||
@SneakyThrows
|
||||
public void dummyTest() {
|
||||
|
||||
// Build needs one test to not fail.
|
||||
// Build needs one text to not fail.
|
||||
assertThat(1).isEqualTo(1);
|
||||
}
|
||||
|
||||
@@ -212,7 +183,7 @@ public class OcrServiceIntegrationTest {
|
||||
|
||||
@Bean
|
||||
@Primary
|
||||
public StorageService inMemoryStorage() {
|
||||
public StorageService inmemoryStorage() {
|
||||
|
||||
return new FileSystemBackedStorageService();
|
||||
}
|
||||
|
||||
-8
@@ -122,14 +122,6 @@ class ImagePositionRetrievalServiceTest {
|
||||
assertThat(allRectCoords.size()).isEqualTo(48);
|
||||
}
|
||||
|
||||
@Test
|
||||
@SneakyThrows
|
||||
public void testEveryPointInDashedLineIsImage() {
|
||||
String fileName = "everyPointInDashedLineIsImage";
|
||||
List<int[]> allRectCoords = testImagePositionDetection(fileName);
|
||||
assertThat(allRectCoords.size()).isEqualTo(0);
|
||||
}
|
||||
|
||||
|
||||
private List<int[]> testImagePositionDetection(String fileName) throws IOException, PDFNetException {
|
||||
|
||||
|
||||
@@ -5,13 +5,4 @@ spring:
|
||||
allow-circular-references: true # FIXME
|
||||
|
||||
|
||||
pdftron.license: demo:1650351709282:7bd235e003000000004ec28a6743e1163a085e2115de2536ab6e2cfe5a
|
||||
|
||||
|
||||
management:
|
||||
endpoint:
|
||||
metrics.enabled: true
|
||||
prometheus.enabled: true
|
||||
health.enabled: true
|
||||
endpoints.web.exposure.include: prometheus, health, metrics
|
||||
metrics.export.prometheus.enabled: true
|
||||
pdftron.license: demo:1650351709282:7bd235e003000000004ec28a6743e1163a085e2115de2536ab6e2cfe5a
|
||||
BIN
Binary file not shown.
@@ -1,16 +0,0 @@
|
||||
<Configuration>
|
||||
|
||||
<Appenders>
|
||||
<Console name="CONSOLE" target="SYSTEM_OUT">
|
||||
<PatternLayout pattern="%d{HH:mm:ss.SSS} [%t] %-5level %logger{36} - %msg%n"/>
|
||||
</Console>
|
||||
</Appenders>
|
||||
|
||||
<Loggers>
|
||||
<Root level="warn">
|
||||
<AppenderRef ref="CONSOLE"/>
|
||||
</Root>
|
||||
<Logger name="com.iqser" level="info"/>
|
||||
</Loggers>
|
||||
|
||||
</Configuration>
|
||||
Reference in New Issue
Block a user