Infrastructure to deploy Research Projects

The Infrastructure expects to be deployed in the same Pod / local environment as the analysis container and handles all outbound communication.

Configuration

A configuration is located in /config.yaml. All relevant variables can be configured via exporting environment variables.

Environment Variable	Default	Description
LOGGING_LEVEL_ROOT	DEBUG	Logging level for service logger
PROBING_WEBSERVER_HOST	"0.0.0.0"	Probe webserver address
PROBING_WEBSERVER_PORT	8080	Probe webserver port
PROBING_WEBSERVER_MODE	production	Webserver mode: {development, production}
RABBITMQ_HOST	localhost	RabbitMQ host address
RABBITMQ_PORT	5672	RabbitMQ host port
RABBITMQ_USERNAME	user	RabbitMQ username
RABBITMQ_PASSWORD	bitnami	RabbitMQ password
RABBITMQ_HEARTBEAT	7200	Controls AMQP heartbeat timeout in seconds
REQUEST_QUEUE	request_queue	Requests to service
RESPONSE_QUEUE	response_queue	Responses by service
DEAD_LETTER_QUEUE	dead_letter_queue	Messages that failed to process
ANALYSIS_ENDPOINT	"http://127.0.0.1:5000"	Endpoint for analysis container
STORAGE_BACKEND	s3	The type of storage to use {s3, azure}
STORAGE_BUCKET	"pyinfra-test-bucket"	The bucket / container to pull files specified in queue requests from
STORAGE_ENDPOINT	"http://127.0.0.1:9000"	Endpoint for s3 storage
STORAGE_KEY	root	User for s3 storage
STORAGE_SECRET	password	Password for s3 storage
STORAGE_AZURECONNECTIONSTRING	"DefaultEndpointsProtocol=..."	Connection string for Azure storage

Response Format

Expected AMQP input message:

{
   "dossierId": "",
   "fileId": "",
   "targetFileExtension": "",
   "responseFileExtension": ""
}

Optionally, the input message can contain a field with the key "operations".

AMQP output message:

{
  "dossierId": "",
  "fileId": "",
   ...
}

Development

Either run src/serve.py or the built Docker image.

Setup

Install module.

 pip install -e .
 pip install -r requirements.txt

or build docker image.

docker build -f Dockerfile -t pyinfra .

Usage

Shell 1: Start a MinIO and a RabbitMQ docker container.

docker-compose up

Shell 2: Add files to the local minio storage.

python scripts/manage_minio.py add <MinIO target folder> -d path/to/a/folder/with/PDFs

Shell 2: Run pyinfra-server.

python src/serve.py    

or as container:

docker run --net=host pyinfra

Shell 3: Run analysis-container.

Shell 4: Start a client that sends requests to process PDFs from the MinIO store and annotates these PDFs according to the service responses.

python scripts/mock_client.py