Marmelator/redaction-service
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Thierry Goeckel c650361ec2 Pull request #63: Fix sponsor companies rule and add corresponding test 
Merge in RED/redaction-service from RED-473 to master

* commit '122d5a556e35b961ba2199280f6836221c6f768c':
  Bump conf service version and remove obsolete object init
  Fix test
  Fix rule in drools file, too
  Fix sponsor companies rule and add corresponding test
 2020-11-04 11:59:15 +01:00
Thierry Göckel 122d5a556e Bump conf service version and remove obsolete object init 2020-11-04 11:49:13 +01:00
Thierry Göckel 355cb16679 Fix test 2020-11-03 21:10:17 +01:00
Thierry Göckel c285c384ce Fix rule in drools file, too 2020-11-03 20:48:23 +01:00
Thierry Göckel 02052fbb6a Fix sponsor companies rule and add corresponding test 2020-11-03 20:47:11 +01:00
Thierry Goeckel 6986b14713 Pull request #57: RED-451 Legal Basis 
Merge in RED/redaction-service from RED-451 to master

* commit '8be59e4ddf2432f47a57d50e2743886c56af3652':
  Add legal basis to redaction log entry
  Integrate legal basis to rules, redaction annotation and tests
 2020-10-27 12:00:59 +01:00
Thierry Göckel 8be59e4ddf Add legal basis to redaction log entry 2020-10-26 15:03:21 +01:00
Thierry Göckel f0f748db1b Integrate legal basis to rules, redaction annotation and tests 2020-10-26 10:07:41 +01:00
Thierry Goeckel 04f0c29a49 Pull request #56: Streamline actuator settings 
Merge in RED/redaction-service from actuator-settings to master

* commit 'b5192b7424745360dc2206b45ec7f7667b867e27':
  Streamline actuator settings
 2020-10-22 09:43:11 +02:00
Thierry Göckel b5192b7424 Streamline actuator settings 2020-10-21 17:50:33 +02:00
Thierry Goeckel e76b893c8d Pull request #51: RED-104 
Merge in RED/redaction-service from RED-104 to master

* commit 'fa29f56d98d05fd348dd27e3bbb1098851c238bd':
  Test line break fix
 2020-10-05 11:02:56 +02:00
Thierry Goeckel d91612a69a Pull request #50: Make sure section and table char indices match 
Merge in RED/redaction-service from RED-381 to master

* commit '9a965dd68a72285af6bf6a28ec6aa67358c35dba':
  Make sure section and table char indices match
 2020-10-05 11:02:44 +02:00
Thierry Göckel fa29f56d98 Test line break fix 2020-10-02 18:11:58 +02:00
Thierry Göckel 9a965dd68a Make sure section and table char indices match 2020-10-02 17:54:31 +02:00
Thierry Goeckel 589458a112 Pull request #46: Add rule redacting sponsor companies if preceded by prefix 
Merge in RED/redaction-service from RED-301 to master

* commit '6a8f3665198ec2d7452ed0dac43b9a7d220c8bc5':
  Remove entries from must_redact dict, add test and refactor rules
  Add rule redacting sponsor companies if preceded by prefix
 2020-10-01 11:44:41 +02:00
Thierry Göckel 6a8f366519 Remove entries from must_redact dict, add test and refactor rules 2020-09-30 16:08:56 +02:00
Thierry Göckel cec5fd3d5e Add rule redacting sponsor companies if preceded by prefix 2020-09-30 14:13:17 +02:00
Thierry Göckel 8e5ff31810 Fix annotating single letter entities 2020-09-29 15:10:52 +02:00
Thierry Goeckel c9516205fe Pull request #42: RED-318 
Merge in RED/redaction-service from RED-318 to master

* commit 'f5790bccab3fb8dce66aeb9fbe501655ae6b86c3':
  Log entries and manual redaction require one position per line
  Annotate line by line
  Refactor multiple positions to one
  Merge rectangles for single annotation/redaction log entry
 2020-09-29 14:15:21 +02:00
Thierry Göckel f5790bccab Log entries and manual redaction require one position per line 2020-09-29 13:54:32 +02:00
Thierry Göckel 74e63ca292 Annotate line by line 2020-09-29 13:43:16 +02:00
Thierry Göckel 6638f0cf9e Refactor multiple positions to one 2020-09-28 17:47:55 +02:00
Thierry Göckel 5448153096 Merge rectangles for single annotation/redaction log entry 2020-09-28 17:31:40 +02:00
Thierry Goeckel 564d74e39d Pull request #40: Test modified rules 8 and 10 
Merge in RED/redaction-service from RED-288 to master

* commit 'cfb7554c618b9482f529b8183bc0f1f95df7d00f':
  Test modified rules 8 and 9
 2020-09-23 11:44:35 +02:00
Thierry Göckel cfb7554c61 Test modified rules 8 and 9 2020-09-22 21:36:05 +02:00
Thierry Goeckel 34e058c4e4 Pull request #35: Fix redaction in single cell tables 
Merge in RED/redaction-service from RED-279 to master

* commit '3d5455d7297e5805ad30a578d00d6d1737820c7d':
  Fix redaction in single cell tables
 2020-09-02 14:39:08 +02:00
Thierry Göckel 3d5455d729 Fix redaction in single cell tables 2020-09-02 14:31:38 +02:00
Thierry Goeckel b07ebf78d2 Pull request #34: RED-267: Return dictionary and rules version in redactionLog 
Merge in RED/redaction-service from RED-267 to master

* commit 'b5fa771c285554132edc32e1df59836fd7748b9a':
  RED-267: Return dictionary and rules version in redactionLog
 2020-09-02 08:54:43 +02:00
Thierry Goeckel 81ea2e91ef Pull request #33: Fix entity span in table rows and detection of headers in rotated tables 
Merge in RED/redaction-service from bugfix/rowspan-and-header-in-rotated-table-fix to master

* commit '4954aafed78e06484531d6264bdf215176ee0ef2':
  Reduce log level.
  Remove unused import
  Adjust test to added rule and fix vertical header propagation for row > 2
  Fix entity span in table rows and detection of headers in rotated tables
 2020-08-25 17:30:57 +02:00
Thierry Göckel 4954aafed7 Reduce log level. 2020-08-25 17:21:56 +02:00
Thierry Göckel 0baf48698d Remove unused import 2020-08-25 15:45:24 +02:00
Thierry Göckel 3c590dcf1d Adjust test to added rule and fix vertical header propagation for row > 
2
 2020-08-25 15:41:44 +02:00
Thierry Göckel 848c506c3f Fix entity span in table rows and detection of headers in rotated tables 2020-08-25 13:50:34 +02:00
Thierry Goeckel 6483e637c6 Pull request #32: Remove '-' in headernames 
Merge in RED/redaction-service from tablesHeader3 to master

* commit '272c7cc2287b146664b8bb277c3731262ac78a19':
  Remove '-' in headernames
 2020-08-24 16:15:44 +02:00
Thierry Goeckel 5586531c33 Pull request #31: Made rules for table more stabil and flexible 
Merge in RED/redaction-service from tablesRules2 to master

* commit '559c42154276ea861c09cf29b71d9bb9c17e6e87':
  Made rules for table more stabil and flexible
 2020-08-24 14:52:29 +02:00
Thierry Göckel 38ddb1d9c8 Fix test and logic of same page table merge for one row tables 2020-08-24 14:06:34 +02:00
Thierry Goeckel 92f0af9d21 Pull request #28: Highlight N in vertebrate study tables and fixed rule order 
Merge in RED/redaction-service from tableRules to master

* commit 'afa26895c8e78f261ec3700c515f412d8cf605ce':
  Fixed test problem
  Fixed pmd
  Highlight N in vertebrate study tables and fixed rule order
 2020-08-24 13:15:11 +02:00
Thierry Göckel baa703928f Fix multi-page table merge 2020-08-24 13:03:03 +02:00
Thierry Göckel 00a960ee23 Fix merging of tables with single header row table 2020-08-24 11:43:19 +02:00
Thierry Göckel 76369f13f8 Remove redundant comment 2020-08-18 20:53:41 +02:00
Thierry Göckel 1fff4f7eb0 RED-101: Add features as requested in PR 
- Add rule for non-vertebrate studies
- Don't highlight ambiguous cell values
- Rewrite rules in more human-readable fashion
 2020-08-18 20:35:40 +02:00
Thierry Göckel c7f5b4a280 Add unit test for table structure requirements 2020-08-18 20:35:17 +02:00
Thierry Göckel 4236fa05cc Make table structure detection more robust 2020-08-13 17:48:37 +02:00
Thierry Goeckel 031f10435d Pull request #24: RED-88: Enabled manual redaction 
Merge in RED/redaction-service from RED-88 to master

* commit '5d286f58e918b22f041ae54f982f14b2d4fcefa6':
  PR Improvements
  redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/ManualRedactions.java online editiert mit Bitbucket
  redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/ManualRedactions.java online editiert mit Bitbucket
  RED-88: Enabled manual redaction
 2020-08-13 16:20:53 +02:00
Thierry Goeckel 954765759c Pull request #23: Log warning message if tabular data mismatches 
Merge in RED/redaction-service from RED-101-quickfix to master

* commit '17aabcd09c1f76bdd467f66aac0cf243c0625734':
  Fix index out of bounds exception
  Remove redundant warn message
  Fix NPE for empty cells
  Add test redacting all files and expecting no exception
  Log warning message if tabular data mismatches
 2020-08-13 11:33:17 +02:00
Thierry Göckel 17aabcd09c Fix index out of bounds exception 2020-08-13 11:13:01 +02:00
Thierry Göckel 32aa500983 Remove redundant warn message 2020-08-13 11:04:56 +02:00
Thierry Göckel a151a13b4c Fix NPE for empty cells 2020-08-13 11:02:09 +02:00
Thierry Göckel 5542a97a38 Add test redacting all files and expecting no exception 2020-08-13 10:14:49 +02:00
Thierry Göckel 8edaa93bda Log warning message if tabular data mismatches 2020-08-13 10:07:53 +02:00
Thierry Göckel c93ca745fc Normalize header information 2020-08-11 10:24:33 +02:00
Thierry Göckel a6415363cd Fix test and suppress checkstyle warnings 2020-08-10 19:04:49 +02:00
Thierry Göckel d97a7b629a Fix PMD errors 2020-08-10 19:04:49 +02:00
Thierry Göckel 00c96c6f57 RED-101: Detect vertebrate study row value 2020-08-10 19:04:49 +02:00
Thierry Göckel 06630b09d2 RED-101: Implement table cell and row redaction 2020-08-10 19:04:49 +02:00
Thierry Göckel 695564d162 Fix style 
Fix style.

Fix style.

Fix style and naming

Fix style, naming and field modifier

Fix style and remove warning suppression
 2020-08-10 19:04:49 +02:00
Thierry Goeckel 70804f111d Pull request #17: Duplicates 
Merge in RED/redaction-service from duplicates to master

* commit '81723ce4022e1e006054eb743f2cc2c0b9faf14f':
  Use void method type
  Use EqualsAndHashcode annotation from Lombok
  Fixed duplicated redaction/RedactionLog entries
  RED-211, RED-215 Added dictionaries and rules for testing.
 2020-08-04 10:59:38 +02:00
Thierry Göckel 81723ce402 Use void method type 2020-08-04 10:34:54 +02:00
Thierry Goeckel ca439d821d Pull request #12: Bugfix/RED-183 
Merge in RED/redaction-service from bugfix/RED-183 to master

* commit '7dbe03483b7a8a3c391e9d0791717b9fab5fc5db':
  RED-183: Fix catching validation errors
  Fix style.
 2020-07-23 14:48:11 +02:00
Thierry Göckel 7dbe03483b RED-183: Fix catching validation errors 2020-07-23 13:36:02 +02:00
Thierry Göckel 33ab09d7fc Fix style. 2020-07-23 13:35:58 +02:00
Thierry Goeckel 9a425a8594 Pull request #11: Feature/RED-161: replace hard-coded hint-type with dictionary-service query 
Merge in RED/redaction-service from feature/RED-161 to master

* commit '3eb37fa6db0d9f1a4e6b93b2047b3b96c94cd9ff':
  RED-161: reverse caseSensitive
  RED-161: replace hard-coded hint-type with dictionary-service query
 2020-07-23 10:59:37 +02:00
Thierry Goeckel fe5c20e1a0 Pull request #7: Fix application startup and remove redundant code. 
Merge in RED/redaction-service from bugfix/application-startup to master

* commit '3e18fe19f31081df98670130512ab3933f7015af':
  Fix application startup and remove redundant code.
 2020-07-20 09:18:21 +02:00
Thierry Göckel 3e18fe19f3 Fix application startup and remove redundant code. 2020-07-20 09:14:25 +02:00
Thierry Goeckel 5e48450669 Pull request #4: RED-125: Section must know its headlines, RED-156: Return RedactionLog 
Merge in RED/redaction-service from RED-125,RED-156 to master

* commit '4b818dba54eea8eb33d5507e024487d5be3ca996':
  DEV: Fixed build problem
  redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/segmentation/SectionsBuilderService.java online editiert mit Bitbucket
  redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/segmentation/SectionsBuilderService.java online editiert mit Bitbucket
  redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/segmentation/SectionsBuilderService.java online editiert mit Bitbucket
  redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/segmentation/SectionsBuilderService.java online editiert mit Bitbucket
  redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/segmentation/SectionsBuilderService.java online editiert mit Bitbucket
  redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/segmentation/SectionsBuilderService.java online editiert mit Bitbucket
  RED-125: Section must know its headlines RED-156: Return RedactionLog
 2020-07-17 15:16:48 +02:00
Thierry Göckel c80cae3fc3 No need to write or add rules to file in classpath. 2020-07-17 12:55:49 +02:00
Thierry Göckel 4832555343 RED-155: Bump config service version to make sure, dictionaries and 
rules are pulled correctly.
 2020-07-17 12:40:49 +02:00
Thierry Goeckel 0ed8530cb5 Pull request #3: Load initial rules from configuration service. 
Merge in RED/redaction-service from feature/load-initial-rules-from-configuration-service to master

* commit '01d08fb1913d748fe04fcea78b8a405a92bd1a49':
  Removed code is debugged code.
  Add real test.
  Remove unused import.
  Make testing possible again.
  Move update of rules out of controller.
  Load initial rules from configuration service.
 2020-07-17 11:24:07 +02:00
Thierry Göckel 01d08fb191 Removed code is debugged code. 2020-07-17 11:13:31 +02:00
Thierry Göckel 705c499911 Add real test. 2020-07-16 15:57:22 +02:00
Thierry Göckel 7435c1eb87 Remove unused import. 2020-07-16 14:18:18 +02:00
Thierry Göckel 531e34c6d0 Make testing possible again. 2020-07-16 13:37:43 +02:00
Thierry Göckel cc0d585c0b Move update of rules out of controller. 2020-07-16 10:21:23 +02:00
Thierry Göckel 74e5bc0635 Load initial rules from configuration service. 2020-07-14 17:12:27 +02:00
Thierry Göckel bf89e42fcf DEV: Update rules on each redaction request. 2020-07-09 13:47:31 +02:00
Thierry Goeckel a3d471e940 Pull request #1: DEV: Handle rules validation exception when updating. 
Merge in RED/redaction-service from dev/rules-validation to master

* commit '23741deff713d5c865c13aa3a8cac73795d969e8':
  DEV: Use appropriate HTTP request type.
  DEV: Handle rules validation exception when updating.
 2020-07-09 10:25:26 +02:00
Thierry Göckel 23741deff7 DEV: Use appropriate HTTP request type. 2020-07-09 10:06:17 +02:00
Thierry Göckel bbc3b862a0 DEV: Handle rules validation exception when updating. 2020-07-08 11:27:28 +02:00