Hotfix for duplicate entries in redactionLog

Merge in RED/redaction-service from RED-2742-backport to release/2.52.x

* commit '17fa161d7785a1d54b862376041a41ac464b6cae':
  RED-2742: Fixed annotation positions for rotation = 0 and direction = 90

bamboo-specs/src/main/java/buildjob/PlanSpec.java

@@ -93,6 +93,11 @@ public class PlanSpec {
                                                 .description("Resultparser")
                                                 .resultDirectories("**/test-reports/*.xml, **/target/surefire-reports/*.xml, **/target/failsafe-reports/*.xml")
                                                 .enabled(true),
+                                        new ScriptTask()
+                                                .description("Sonar")
+                                                .location(Location.FILE)
+                                                .fileFromPath("bamboo-specs/src/main/resources/scripts/sonar-java.sh")
+                                                .argument(SERVICE_NAME),
                                         new InjectVariablesTask()
                                                 .description("Inject git Tag")
                                                 .path("git.tag")

bamboo-specs/src/main/resources/scripts/sonar-java.sh

@@ -0,0 +1,42 @@
+#!/bin/bash
+set -e
+
+SERVICE_NAME=$1
+
+echo "dependency-check:aggregate"
+${bamboo_capability_system_builder_mvn3_Maven_3}/bin/mvn \
+    --no-transfer-progress \
+    -f ${bamboo_build_working_directory}/$SERVICE_NAME-v1/pom.xml \
+    org.owasp:dependency-check-maven:aggregate
+
+if [[ -z "${bamboo_repository_pr_key}" ]]
+then
+    echo "Sonar Scan for branch: ${bamboo_planRepository_1_branch}"
+    ${bamboo_capability_system_builder_mvn3_Maven_3}/bin/mvn \
+            --no-transfer-progress \
+            -f ${bamboo_build_working_directory}/$SERVICE_NAME-v1/pom.xml \
+            sonar:sonar \
+            -Dsonar.projectKey=RED_$SERVICE_NAME \
+            -Dsonar.host.url=https://sonarqube.iqser.com \
+            -Dsonar.login=${bamboo_sonarqube_api_token_secret} \
+            -Dsonar.branch.name=${bamboo_planRepository_1_branch} \
+            -Dsonar.dependencyCheck.jsonReportPath=target/dependency-check-report.json \
+            -Dsonar.dependencyCheck.xmlReportPath=target/dependency-check-report.xml \
+            -Dsonar.dependencyCheck.htmlReportPath=target/dependency-check-report.html
+
+else
+    echo "Sonar Scan for PR with key1: ${bamboo_repository_pr_key}"
+    ${bamboo_capability_system_builder_mvn3_Maven_3}/bin/mvn \
+            --no-transfer-progress \
+            -f ${bamboo_build_working_directory}/$SERVICE_NAME-v1/pom.xml \
+            sonar:sonar \
+            -Dsonar.projectKey=RED_$SERVICE_NAME \
+            -Dsonar.host.url=https://sonarqube.iqser.com \
+            -Dsonar.login=${bamboo_sonarqube_api_token_secret} \
+            -Dsonar.pullrequest.key=${bamboo_repository_pr_key} \
+            -Dsonar.pullrequest.branch=${bamboo_repository_pr_sourceBranch} \
+            -Dsonar.pullrequest.base=${bamboo_repository_pr_targetBranch} \
+            -Dsonar.dependencyCheck.jsonReportPath=target/dependency-check-report.json \
+            -Dsonar.dependencyCheck.xmlReportPath=target/dependency-check-report.xml \
+            -Dsonar.dependencyCheck.htmlReportPath=target/dependency-check-report.html
+fi

redaction-service-image-v1/src/main/docker/Dockerfile

@@ -13,6 +13,7 @@ RUN apt-get update \
     wget cabextract xfonts-utils fonts-liberation \
  && rm -rf /var/lib/apt/lists/*
 
-RUN curl http://ftp.br.debian.org/debian/pool/contrib/m/msttcorefonts/ttf-mscorefonts-installer_3.8_all.deb -o /tmp/ttf-mscorefonts-installer_3.8_all.deb \
+RUN curl http://ftp.debian.org/debian/pool/contrib/m/msttcorefonts/ttf-mscorefonts-installer_3.8_all.deb -o /tmp/ttf-mscorefonts-installer_3.8_all.deb \
  && dpkg -i /tmp/ttf-mscorefonts-installer_3.8_all.deb \
  && rm /tmp/ttf-mscorefonts-installer_3.8_all.deb \
+

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/Argument.java

@@ -1,15 +0,0 @@
-package com.iqser.red.service.redaction.v1.model;
-
-import lombok.AllArgsConstructor;
-import lombok.Data;
-import lombok.NoArgsConstructor;
-
-@Data
-@NoArgsConstructor
-@AllArgsConstructor
-public class Argument {
-
-    private String name;
-    private ArgumentType type;
-
-}

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/ArgumentType.java

@@ -1,7 +0,0 @@
-package com.iqser.red.service.redaction.v1.model;
-
-public enum ArgumentType {
-
-    INTEGER, BOOLEAN, STRING, FILE_ATTRIBUTE, REGEX, TYPE, RULE_NUMBER, LEGAL_BASIS, REFERENCE_TYPE
-
-}

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/Change.java

@@ -1,18 +0,0 @@
-package com.iqser.red.service.redaction.v1.model;
-
-import java.time.OffsetDateTime;
-
-import lombok.AllArgsConstructor;
-import lombok.Builder;
-import lombok.Data;
-import lombok.NoArgsConstructor;
-
-@Data
-@Builder
-@AllArgsConstructor
-@NoArgsConstructor
-public class Change {
-
-    private ChangeType type;
-    private OffsetDateTime dateTime;
-}

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/ChangeType.java

@@ -1,5 +1,5 @@
 package com.iqser.red.service.redaction.v1.model;
 
 public enum ChangeType {
-    ADDED, REMOVED, CHANGED
+    ADDED, REMOVED
 }

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/Engine.java

@@ -1,5 +0,0 @@
-package com.iqser.red.service.redaction.v1.model;
-
-public enum Engine {
-    DICTIONARY, NER, RULE
-}

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/ManualLegalBasisChange.java

@@ -17,6 +17,7 @@ public class ManualLegalBasisChange {
     private String user;
     private Status status;
     private String legalBasis;
+    private String section;
 
     private OffsetDateTime requestDate;
     private OffsetDateTime processedDate;

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/ManualRedactionEntry.java

@@ -23,6 +23,7 @@ public class ManualRedactionEntry {
     private String legalBasis;
     private List<Rectangle> positions = new ArrayList<>();
     private Status status;
+    private String section;
 
     private boolean addToDictionary;
     private boolean addToDossierDictionary;

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/RedactionChangeLog.java

@@ -0,0 +1,22 @@
+package com.iqser.red.service.redaction.v1.model;
+
+import lombok.AllArgsConstructor;
+import lombok.Data;
+import lombok.NoArgsConstructor;
+
+import java.util.ArrayList;
+import java.util.List;
+
+@Data
+@AllArgsConstructor
+@NoArgsConstructor
+public class RedactionChangeLog {
+
+    private List<RedactionChangeLogEntry> redactionLogEntry = new ArrayList<>();
+
+    private long dictionaryVersion = -1;
+    private long dossierDictionaryVersion = -1;
+    private long rulesVersion = -1;
+    private long legalBasisVersion = -1;
+
+}

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/RedactionChangeLogEntry.java

@@ -0,0 +1,49 @@
+package com.iqser.red.service.redaction.v1.model;
+
+import lombok.AllArgsConstructor;
+import lombok.Builder;
+import lombok.Data;
+import lombok.NoArgsConstructor;
+
+import java.util.ArrayList;
+import java.util.List;
+
+@Data
+@Builder
+@NoArgsConstructor
+@AllArgsConstructor
+public class RedactionChangeLogEntry {
+
+    private String id;
+    private String type;
+    private String value;
+    private String reason;
+    private int matchedRule;
+    private String legalBasis;
+    private boolean redacted;
+    private boolean isHint;
+    private boolean isRecommendation;
+    private String section;
+    private float[] color;
+
+    @Builder.Default
+    private List<Rectangle> positions = new ArrayList<>();
+    private int sectionNumber;
+    private boolean manual;
+    private Status status;
+    private ManualRedactionType manualRedactionType;
+    private boolean isDictionaryEntry;
+
+    private String textBefore;
+    private String textAfter;
+
+    @Builder.Default
+    private List<Comment> comments = new ArrayList<>();
+
+    private ChangeType changeType;
+
+    private boolean isDossierDictionaryEntry;
+
+    private boolean excluded;
+
+}

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/RedactionLogChanges.java

@@ -1,17 +0,0 @@
-package com.iqser.red.service.redaction.v1.model;
-
-import lombok.AllArgsConstructor;
-import lombok.Builder;
-import lombok.Data;
-import lombok.NoArgsConstructor;
-
-@Data
-@Builder
-@AllArgsConstructor
-@NoArgsConstructor
-public class RedactionLogChanges {
-
-    private RedactionLog redactionLog;
-    private boolean hasChanges;
-
-}

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/RedactionLogEntry.java

@@ -7,9 +7,9 @@ import lombok.EqualsAndHashCode;
 import lombok.NoArgsConstructor;
 
 import java.util.ArrayList;
-import java.util.HashSet;
 import java.util.List;
-import java.util.Set;
+
+
 
 @Data
 @Builder
@@ -58,14 +58,4 @@ public class RedactionLogEntry {
     private String recategorizationType;
     private String legalBasisChangeValue;
 
-    @EqualsAndHashCode.Exclude
-    @Builder.Default
-    private List<Change> changes = new ArrayList<>();
-
-    private Set<Engine> engines= new HashSet<>();
-
-    private Set<String> reference = new HashSet<>();
-
-
-
 }

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/RedactionRequest.java

@@ -20,4 +20,6 @@ public class RedactionRequest {
     private ManualRedactions manualRedactions;
     @Builder.Default
     private Set<Integer> excludedPages = new HashSet<>();
+
+    private boolean withSectionDataForManualRedactions;
 }

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/RuleBuilderModel.java

@@ -1,14 +0,0 @@
-package com.iqser.red.service.redaction.v1.model;
-
-import lombok.Data;
-
-import java.util.ArrayList;
-import java.util.List;
-
-@Data
-public class RuleBuilderModel {
-
-    private List<RuleElement> whenClauses = new ArrayList<>();
-    private List<RuleElement> thenConditions = new ArrayList<>();
-
-}

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/RuleElement.java

@@ -1,18 +0,0 @@
-package com.iqser.red.service.redaction.v1.model;
-
-import lombok.AllArgsConstructor;
-import lombok.Data;
-import lombok.NoArgsConstructor;
-
-import java.util.ArrayList;
-import java.util.List;
-
-@Data
-@NoArgsConstructor
-@AllArgsConstructor
-public class RuleElement {
-
-    private String conditionName;
-    private List<Argument> arguments = new ArrayList<>();
-
-}

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/SectionArea.java

@@ -27,7 +27,11 @@ public class SectionArea {
     private String header;
 
     public boolean contains(Rectangle other) {
-        return page == other.getPage() && this.topLeft.getX() <= other.getTopLeft().getX() && this.topLeft.getX() + this.getWidth() >= other.getTopLeft().getX() + other.getWidth() && this.getTopLeft().getY() <= other.getTopLeft().getY() && this.getTopLeft().getY() + this.getHeight() >= other.getTopLeft().getY() + other.getHeight();
+        return page == other.getPage()
+                && topLeft.getX() <= other.getTopLeft().getX()
+                && topLeft.getX() + getWidth() >= other.getTopLeft().getX() + other.getWidth()
+                && getTopLeft().getY() <= other.getTopLeft().getY()
+                && getTopLeft().getY() + getHeight() >= other.getTopLeft().getY() + other.getHeight();
     }
 
 }

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/SectionGrid.java

@@ -3,10 +3,9 @@ package com.iqser.red.service.redaction.v1.model;
 import lombok.AllArgsConstructor;
 import lombok.Data;
 import lombok.NoArgsConstructor;
+import lombok.RequiredArgsConstructor;
 
-import java.util.HashMap;
-import java.util.List;
-import java.util.Map;
+import java.util.*;
 
 @Data
 @AllArgsConstructor
@@ -15,4 +14,16 @@ public class SectionGrid {
 
     private Map<Integer, List<SectionRectangle>> rectanglesPerPage = new HashMap<>();
 
+    private List<SectionGridSection> sections = new ArrayList<>();
+
+    @Data
+    @RequiredArgsConstructor
+    public static class SectionGridSection {
+
+        private final int sectionNumber;
+        private final String headline;
+        private final Set<Integer> pages;
+        private final List<SectionArea> sectionAreas;
+
+    }
 }

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/SectionRectangle.java

@@ -1,10 +1,6 @@
 package com.iqser.red.service.redaction.v1.model;
 
-import lombok.AllArgsConstructor;
-import lombok.Data;
-import lombok.NoArgsConstructor;
-import lombok.NonNull;
-import lombok.RequiredArgsConstructor;
+import lombok.*;
 
 import java.util.List;
 
@@ -31,4 +27,11 @@ public class SectionRectangle {
 
     private List<CellRectangle> tableCells;
 
+    public boolean contains(Rectangle other) {
+        return topLeft.getX() <= other.getTopLeft().getX()
+                && topLeft.getX() + getWidth() >= other.getTopLeft().getX() + other.getWidth()
+                && getTopLeft().getY() <= other.getTopLeft().getY()
+                && getTopLeft().getY() + getHeight() >= other.getTopLeft().getY() + other.getHeight();
+
+    }
 }

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/StructureAnalyzeRequest.java

@@ -1,18 +0,0 @@
-package com.iqser.red.service.redaction.v1.model;
-
-import lombok.AllArgsConstructor;
-import lombok.Builder;
-import lombok.Data;
-import lombok.NoArgsConstructor;
-
-@Data
-@Builder
-@NoArgsConstructor
-@AllArgsConstructor
-public class StructureAnalyzeRequest {
-
-    private String dossierId;
-    private String fileId;
-
-}
-

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/resources/RuleBuilderResource.java

@@ -1,12 +0,0 @@
-package com.iqser.red.service.redaction.v1.resources;
-
-import com.iqser.red.service.redaction.v1.model.RuleBuilderModel;
-import org.springframework.http.MediaType;
-import org.springframework.web.bind.annotation.PostMapping;
-
-public interface RuleBuilderResource {
-
-    @PostMapping(value = "/rule-builder-model", produces = MediaType.APPLICATION_JSON_VALUE)
-    RuleBuilderModel getRuleBuilderModel();
-
-}

redaction-service-v1/redaction-service-server-v1/pom.xml

@@ -24,7 +24,7 @@
         <dependency>
             <groupId>com.iqser.red.service</groupId>
             <artifactId>file-management-service-api-v1</artifactId>
-            <version>2.96.0</version>
+            <version>2.80.15</version>
             <exclusions>
                 <exclusion>
                     <groupId>com.iqser.red.service</groupId>

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/classification/model/Document.java

@@ -1,14 +1,19 @@
 package com.iqser.red.service.redaction.v1.server.classification.model;
 
-import java.util.ArrayList;
-import java.util.List;
-
+import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
 import com.iqser.red.service.redaction.v1.model.SectionGrid;
 import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryVersion;
-
+import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
+import com.iqser.red.service.redaction.v1.server.redaction.model.Image;
 import lombok.Data;
 import lombok.NoArgsConstructor;
 
+import java.util.ArrayList;
+import java.util.HashMap;
+import java.util.List;
+import java.util.Map;
+import java.util.Set;
+
 @Data
 @NoArgsConstructor
 public class Document {
@@ -18,14 +23,20 @@ public class Document {
     private List<Header> headers = new ArrayList<>();
     private List<Footer> footers = new ArrayList<>();
     private List<UnclassifiedText> unclassifiedTexts = new ArrayList<>();
+    private Map<Integer, List<Entity>> entities = new HashMap<>();
     private FloatFrequencyCounter textHeightCounter = new FloatFrequencyCounter();
     private FloatFrequencyCounter fontSizeCounter = new FloatFrequencyCounter();
     private StringFrequencyCounter fontCounter = new StringFrequencyCounter();
     private StringFrequencyCounter fontStyleCounter = new StringFrequencyCounter();
     private boolean headlines;
 
+    private List<RedactionLogEntry> redactionLogEntities = new ArrayList<>();
     private SectionGrid sectionGrid = new SectionGrid();
     private DictionaryVersion dictionaryVersion;
     private long rulesVersion;
 
+    private List<SectionText> sectionText = new ArrayList<>();
+
+    private Map<Integer, Set<Image>> images = new HashMap<>();
+
 }

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/classification/service/BlockificationService.java

@@ -1,5 +1,7 @@
 package com.iqser.red.service.redaction.v1.server.classification.service;
 
+import static java.util.stream.Collectors.toSet;
+
 import com.iqser.red.service.redaction.v1.server.classification.model.FloatFrequencyCounter;
 import com.iqser.red.service.redaction.v1.server.classification.model.Orientation;
 import com.iqser.red.service.redaction.v1.server.classification.model.Page;
@@ -16,6 +18,7 @@ import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
 import org.springframework.stereotype.Service;
 
 import java.util.ArrayList;
+import java.util.Comparator;
 import java.util.Iterator;
 import java.util.List;
 
@@ -25,9 +28,12 @@ public class BlockificationService {
 
     static final float THRESHOLD = 1f;
 
+
     public Page blockify(List<TextPositionSequence> textPositions, List<Ruling> horizontalRulingLines,
                          List<Ruling> verticalRulingLines) {
 
+        sortRotatedSequences(textPositions);
+
         List<TextPositionSequence> chunkWords = new ArrayList<>();
         List<AbstractTextContainer> chunkBlockList1 = new ArrayList<>();
 
@@ -50,7 +56,7 @@ public class BlockificationService {
             if (prev != null && (lineSeparation || startFromTop || splitByX || newLineAfterSplit || splittedByRuling)) {
 
                 Orientation prevOrientation = null;
-                if(!chunkBlockList1.isEmpty()) {
+                if (!chunkBlockList1.isEmpty()) {
                     prevOrientation = chunkBlockList1.get(chunkBlockList1.size() - 1).getOrientation();
                 }
 
@@ -62,15 +68,11 @@ public class BlockificationService {
                     wasSplitted = true;
                     cb1.setOrientation(Orientation.LEFT);
                     splitX1 = word.getX1();
-                } else
-
-                if (newLineAfterSplit && !splittedByRuling) {
+                } else if (newLineAfterSplit && !splittedByRuling) {
                     wasSplitted = false;
                     cb1.setOrientation(Orientation.RIGHT);
                     splitX1 = null;
-                } else
-
-                if(prevOrientation != null && prevOrientation.equals(Orientation.RIGHT) && (lineSeparation || !startFromTop || !splitByX || !newLineAfterSplit || !splittedByRuling)){
+                } else if (prevOrientation != null && prevOrientation.equals(Orientation.RIGHT) && (lineSeparation || !startFromTop || !splitByX || !newLineAfterSplit || !splittedByRuling)) {
                     cb1.setOrientation(Orientation.LEFT);
                 }
 
@@ -110,16 +112,18 @@ public class BlockificationService {
         while (itty.hasNext()) {
             TextBlock block = (TextBlock) itty.next();
 
-            if(previousLeft != null && block.getOrientation().equals(Orientation.LEFT)){
-                if (previousLeft.getMinY() > block.getMinY() && block.getMaxY() + block.getMostPopularWordHeight() > previousLeft.getMinY()){
+            if (previousLeft != null && block.getOrientation().equals(Orientation.LEFT)) {
+                if (previousLeft.getMinY() > block.getMinY() && block.getMaxY() + block.getMostPopularWordHeight() > previousLeft
+                        .getMinY()) {
                     previousLeft.add(block);
                     itty.remove();
                     continue;
                 }
             }
 
-            if(previousRight != null && block.getOrientation().equals(Orientation.RIGHT)){
-                if (previousRight.getMinY() > block.getMinY() && block.getMaxY() + block.getMostPopularWordHeight() > previousRight.getMinY()){
+            if (previousRight != null && block.getOrientation().equals(Orientation.RIGHT)) {
+                if (previousRight.getMinY() > block.getMinY() && block.getMaxY() + block.getMostPopularWordHeight() > previousRight
+                        .getMinY()) {
                     previousRight.add(block);
                     itty.remove();
                     continue;
@@ -133,16 +137,16 @@ public class BlockificationService {
             }
         }
 
-
         itty = chunkBlockList1.iterator();
         TextBlock previous = null;
         while (itty.hasNext()) {
             TextBlock block = (TextBlock) itty.next();
 
-            if(previous != null && previous.getOrientation().equals(Orientation.LEFT) && block.getOrientation().equals(Orientation.LEFT) && equalsWithThreshold(block.getMaxY(), previous
-                    .getMaxY())||
-                    previous != null && previous.getOrientation().equals(Orientation.LEFT) && block.getOrientation().equals(Orientation.RIGHT) && equalsWithThreshold(block.getMaxY(), previous
-                    .getMaxY())){
+            if (previous != null && previous.getOrientation().equals(Orientation.LEFT) && block.getOrientation()
+                    .equals(Orientation.LEFT) && equalsWithThreshold(block.getMaxY(), previous.getMaxY()) || previous != null && previous
+                    .getOrientation()
+                    .equals(Orientation.LEFT) && block.getOrientation()
+                    .equals(Orientation.RIGHT) && equalsWithThreshold(block.getMaxY(), previous.getMaxY())) {
                 previous.add(block);
                 itty.remove();
                 continue;
@@ -151,11 +155,12 @@ public class BlockificationService {
             previous = block;
         }
 
-
         return new Page(chunkBlockList1);
     }
 
-    private boolean equalsWithThreshold(float f1, float f2){
+
+    private boolean equalsWithThreshold(float f1, float f2) {
+
         return Math.abs(f1 - f2) < THRESHOLD;
     }
 
@@ -197,6 +202,13 @@ public class BlockificationService {
             textBlock.setHighestFontSize(fontSizeFrequencyCounter.getHighest());
         }
 
+        if (textBlock != null && textBlock.getSequences() != null && textBlock.getSequences()
+                .stream()
+                .map(t -> round(t.getY1(), 3))
+                .collect(toSet())
+                .size() == 1) {
+            textBlock.getSequences().sort(Comparator.comparing(TextPositionSequence::getX1));
+        }
         return textBlock;
     }
 
@@ -291,4 +303,30 @@ public class BlockificationService {
         return new Rectangle(minY, minX, maxX - minX, maxY - minY);
     }
 
+
+    private void sortRotatedSequences(List<TextPositionSequence> sequences) {
+
+        List<TextPositionSequence> rotatedWords = new ArrayList<>();
+        Iterator<TextPositionSequence> itty = sequences.iterator();
+        while (itty.hasNext()) {
+            var pos = itty.next();
+            if (pos.getTextPositions().get(0).getDir() == 270) {
+                rotatedWords.add(pos);
+                itty.remove();
+            }
+        }
+
+        if (!rotatedWords.isEmpty() && !sequences.isEmpty()) {
+            rotatedWords.sort(Comparator.comparing(TextPositionSequence::getX1));
+        }
+        sequences.addAll(rotatedWords);
+    }
+
+
+    private double round(float value, int decimalPoints) {
+
+        var d = Math.pow(10, decimalPoints);
+        return Math.round(value * d) / d;
+    }
+
 }

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/classification/service/ClassificationService.java

@@ -73,8 +73,10 @@ public class ClassificationService {
             }
         } else if (PositionUtils.isWithinBodyTextFrame(bodyTextFrame, textBlock) && textBlock.getMostPopularWordFontSize() > document
                 .getFontSizeCounter()
-                .getMostPopular() && PositionUtils.getApproxLineCount(textBlock) < 4.9 && textBlock.getMostPopularWordStyle()
-                .equals("bold")) {
+                .getMostPopular() && PositionUtils.getApproxLineCount(textBlock) < 4.9 && (textBlock.getMostPopularWordStyle()
+                .equals("bold") || !document.getFontStyleCounter().getCountPerValue().containsKey("bold") && textBlock.getMostPopularWordFontSize() > document
+                .getFontSizeCounter()
+                .getMostPopular() + 1) && textBlock.getSequences().get(0).getTextPositions().get(0).getFontSizeInPt() >= textBlock.getMostPopularWordFontSize()) {
 
             for (int i = 1; i <= headlineFontSizes.size(); i++) {
                 if (textBlock.getMostPopularWordFontSize() == headlineFontSizes.get(i - 1)) {
@@ -86,7 +88,7 @@ public class ClassificationService {
                 .startsWith("Figure ") && PositionUtils.isWithinBodyTextFrame(bodyTextFrame, textBlock) && textBlock.getMostPopularWordStyle()
                 .equals("bold") && !document.getFontStyleCounter()
                 .getMostPopular()
-                .equals("bold") && PositionUtils.getApproxLineCount(textBlock) < 2.9) {
+                .equals("bold") && PositionUtils.getApproxLineCount(textBlock) < 2.9 && textBlock.getSequences().get(0).getTextPositions().get(0).getFontSizeInPt() >= textBlock.getMostPopularWordFontSize()) {
             textBlock.setClassification("H " + (headlineFontSizes.size() + 1));
             document.setHeadlines(true);
         } else if (PositionUtils.isWithinBodyTextFrame(bodyTextFrame, textBlock) && textBlock.getMostPopularWordFontSize() == document

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/client/EntityRecognitionClient.java

@@ -1,19 +0,0 @@
-package com.iqser.red.service.redaction.v1.server.client;
-
-import java.util.List;
-import java.util.Map;
-
-import org.springframework.cloud.openfeign.FeignClient;
-import org.springframework.http.MediaType;
-import org.springframework.web.bind.annotation.PostMapping;
-
-import com.iqser.red.service.redaction.v1.server.client.model.EntityRecogintionEntity;
-import com.iqser.red.service.redaction.v1.server.client.model.EntityRecognitionRequest;
-import com.iqser.red.service.redaction.v1.server.client.model.NerEntities;
-
-@FeignClient(name = "EntityRecognitionClient", url = "${entity-recognition-service.url}")
-public interface EntityRecognitionClient {
-
-    @PostMapping(value = "/find_authors", produces = MediaType.APPLICATION_JSON_VALUE, consumes = MediaType.APPLICATION_JSON_VALUE)
-    NerEntities findAuthors(EntityRecognitionRequest entityRecognitionRequest);
-}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/client/model/EntityRecogintionEntity.java

@@ -1,19 +0,0 @@
-package com.iqser.red.service.redaction.v1.server.client.model;
-
-import lombok.AllArgsConstructor;
-import lombok.Builder;
-import lombok.Data;
-import lombok.NoArgsConstructor;
-
-@Data
-@Builder
-@AllArgsConstructor
-@NoArgsConstructor
-public class EntityRecogintionEntity {
-
-      private String value;
-      private int startOffset;
-      private int endOffset;
-      private String type;
-
-}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/client/model/EntityRecognitionRequest.java

@@ -1,18 +0,0 @@
-package com.iqser.red.service.redaction.v1.server.client.model;
-
-import java.util.List;
-
-import lombok.AllArgsConstructor;
-import lombok.Builder;
-import lombok.Data;
-import lombok.NoArgsConstructor;
-
-@Data
-@Builder
-@AllArgsConstructor
-@NoArgsConstructor
-public class EntityRecognitionRequest {
-
-   private List<EntityRecognitionSection> data;
-
-}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/client/model/EntityRecognitionResult.java

@@ -1,20 +0,0 @@
-package com.iqser.red.service.redaction.v1.server.client.model;
-
-import java.util.HashMap;
-import java.util.List;
-import java.util.Map;
-
-import lombok.AllArgsConstructor;
-import lombok.Builder;
-import lombok.Data;
-import lombok.NoArgsConstructor;
-
-@Data
-@Builder
-@AllArgsConstructor
-@NoArgsConstructor
-public class EntityRecognitionResult {
-
-    @Builder.Default
-    private Map<Integer, List<EntityRecogintionEntity>> entities = new HashMap<>();
-}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/client/model/EntityRecognitionSection.java

@@ -1,16 +0,0 @@
-package com.iqser.red.service.redaction.v1.server.client.model;
-
-import lombok.AllArgsConstructor;
-import lombok.Builder;
-import lombok.Data;
-import lombok.NoArgsConstructor;
-
-@Data
-@Builder
-@AllArgsConstructor
-@NoArgsConstructor
-public class EntityRecognitionSection {
-
-    private int sectionNumber;
-    private String text;
-}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/client/model/NerEntities.java

@@ -1,21 +0,0 @@
-package com.iqser.red.service.redaction.v1.server.client.model;
-
-import java.util.HashMap;
-import java.util.List;
-import java.util.Map;
-
-import lombok.AllArgsConstructor;
-import lombok.Builder;
-import lombok.Data;
-import lombok.NoArgsConstructor;
-
-@Data
-@Builder
-@AllArgsConstructor
-@NoArgsConstructor
-public class NerEntities {
-
-   @Builder.Default
-   private Map<Integer, List<EntityRecogintionEntity>> result = new HashMap<>();
-
-}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/controller/ControllerAdvice.java

@@ -1,6 +1,7 @@
 package com.iqser.red.service.redaction.v1.server.controller;
 
 import com.iqser.red.commons.spring.ErrorMessage;
+import com.iqser.red.service.redaction.v1.server.exception.RedactionLogNotFoundException;
 import com.iqser.red.service.redaction.v1.server.exception.RulesValidationException;
 import lombok.extern.slf4j.Slf4j;
 import org.springframework.http.HttpStatus;
@@ -17,6 +18,13 @@ public class ControllerAdvice {
 
     /* error handling */
 
+    @ResponseBody
+    @ResponseStatus(value = HttpStatus.NOT_FOUND)
+    @ExceptionHandler(value = RedactionLogNotFoundException.class)
+    public ErrorMessage handleRedactionLogNotFoundException(RedactionLogNotFoundException e) {
+        return new ErrorMessage(OffsetDateTime.now(), e.getMessage());
+    }
+
     @ResponseBody
     @ResponseStatus(value = HttpStatus.INTERNAL_SERVER_ERROR)
     @ExceptionHandler(value = NullPointerException.class)

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/controller/RedactionController.java

@@ -6,12 +6,12 @@ import com.iqser.red.service.redaction.v1.resources.RedactionResource;
 import com.iqser.red.service.redaction.v1.server.classification.model.Document;
 import com.iqser.red.service.redaction.v1.server.classification.model.Page;
 import com.iqser.red.service.redaction.v1.server.exception.RedactionException;
+import com.iqser.red.service.redaction.v1.server.exception.RedactionLogNotFoundException;
 import com.iqser.red.service.redaction.v1.server.redaction.service.AnnotationService;
 import com.iqser.red.service.redaction.v1.server.redaction.service.DictionaryService;
 import com.iqser.red.service.redaction.v1.server.redaction.service.DroolsExecutionService;
 import com.iqser.red.service.redaction.v1.server.redaction.service.RedactionLogMergeService;
 import com.iqser.red.service.redaction.v1.server.segmentation.PdfSegmentationService;
-import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
 import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
 import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
 import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
@@ -20,12 +20,12 @@ import lombok.RequiredArgsConstructor;
 import lombok.extern.slf4j.Slf4j;
 import org.apache.pdfbox.io.MemoryUsageSetting;
 import org.apache.pdfbox.pdmodel.PDDocument;
-import org.springframework.web.bind.annotation.PathVariable;
 import org.springframework.web.bind.annotation.RequestBody;
 import org.springframework.web.bind.annotation.RestController;
 
 import java.io.ByteArrayOutputStream;
 import java.io.IOException;
+import java.util.stream.Collectors;
 
 @Slf4j
 @RestController
@@ -147,19 +147,44 @@ public class RedactionController implements RedactionResource {
     }
 
     @Override
-    public RedactionLog getRedactionLog(RedactionRequest redactionRequest) {
+    public RedactionLog getRedactionLog(@RequestBody RedactionRequest redactionRequest) {
 
         log.info("Requested preview for: {}", redactionRequest);
         dictionaryService.updateDictionary(redactionRequest.getDossierTemplateId(), redactionRequest.getDossierId());
 
+        SectionGrid sectionGrid = null;
         var redactionLog = redactionStorageService.getRedactionLog(redactionRequest.getDossierId(), redactionRequest.getFileId());
 
+        if (redactionLog == null) {
+            throw new RedactionLogNotFoundException();
+        }
+
+
+        if (redactionRequest.isWithSectionDataForManualRedactions()) {
+            sectionGrid = redactionStorageService.getSectionGrid(redactionRequest.getDossierId(), redactionRequest.getFileId());
+            if (sectionGrid.getSections().isEmpty()) {
+
+                log.info("SectionGrid does not have headlines set. Computing headlines now!");
+                var text = redactionStorageService.getText(redactionRequest.getDossierId(), redactionRequest.getFileId());
+
+                // enhance section grid with headline data
+                for (var sectionText : text.getSectionTexts()) {
+                    sectionGrid.getSections().add(new SectionGrid.SectionGridSection(sectionText.getSectionNumber(),
+                            sectionText.getHeadline(),
+                            sectionText.getSectionAreas().stream().map(SectionArea::getPage).collect(Collectors.toSet()),
+                            sectionText.getSectionAreas()));
+                }
+                redactionStorageService.storeObject(redactionRequest.getDossierId(), redactionRequest.getFileId(), FileType.SECTION_GRID, sectionGrid);
+            }
+        }
+
+
         log.info("Loaded redaction log with computationalVersion: {}", redactionLog.getAnalysisVersion());
         if (redactionLog.getAnalysisVersion() == 0) {
             // old redaction logs are returned directly
             return redactionLog;
         } else {
-            return redactionLogMergeService.mergeRedactionLogData(redactionLog, redactionRequest.getDossierTemplateId(), redactionRequest.getManualRedactions(), redactionRequest.getExcludedPages());
+            return redactionLogMergeService.mergeRedactionLogData(redactionLog, sectionGrid, redactionRequest.getDossierTemplateId(), redactionRequest.getManualRedactions(), redactionRequest.getExcludedPages());
         }
     }
 

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/controller/RuleBuilderController.java

@@ -1,21 +0,0 @@
-package com.iqser.red.service.redaction.v1.server.controller;
-
-
-import com.iqser.red.service.redaction.v1.model.RuleBuilderModel;
-import com.iqser.red.service.redaction.v1.resources.RuleBuilderResource;
-import com.iqser.red.service.redaction.v1.server.redaction.rulebuilder.RuleBuilderModelService;
-import lombok.RequiredArgsConstructor;
-import org.springframework.web.bind.annotation.RestController;
-
-@RestController
-@RequiredArgsConstructor
-public class RuleBuilderController implements RuleBuilderResource {
-
-    private final RuleBuilderModelService ruleBuilderModelService;
-
-    @Override
-    public RuleBuilderModel getRuleBuilderModel() {
-        return ruleBuilderModelService.getRuleBuilderModel();
-    }
-
-}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/exception/RedactionLogNotFoundException.java

@@ -0,0 +1,9 @@
+package com.iqser.red.service.redaction.v1.server.exception;
+
+public class RedactionLogNotFoundException extends RuntimeException {
+
+    public RedactionLogNotFoundException() {
+        super("RedactionLog not found!");
+    }
+
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/parsing/PDFLinesTextStripper.java

@@ -1,16 +1,33 @@
 package com.iqser.red.service.redaction.v1.server.parsing;
 
-import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
-import com.iqser.red.service.redaction.v1.server.redaction.model.PdfImage;
-import com.iqser.red.service.redaction.v1.server.tableextraction.model.Ruling;
-import lombok.Getter;
-import lombok.Setter;
-import lombok.extern.slf4j.Slf4j;
+import java.awt.geom.Point2D;
+import java.awt.geom.Rectangle2D;
+import java.io.IOException;
+import java.util.ArrayList;
+import java.util.List;
+
 import org.apache.commons.lang3.reflect.FieldUtils;
 import org.apache.pdfbox.contentstream.operator.Operator;
 import org.apache.pdfbox.contentstream.operator.OperatorName;
-import org.apache.pdfbox.contentstream.operator.color.*;
-import org.apache.pdfbox.contentstream.operator.state.*;
+import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingColor;
+import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingColorN;
+import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingColorSpace;
+import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingDeviceCMYKColor;
+import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingDeviceGrayColor;
+import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingDeviceRGBColor;
+import org.apache.pdfbox.contentstream.operator.color.SetStrokingColor;
+import org.apache.pdfbox.contentstream.operator.color.SetStrokingColorN;
+import org.apache.pdfbox.contentstream.operator.color.SetStrokingColorSpace;
+import org.apache.pdfbox.contentstream.operator.color.SetStrokingDeviceCMYKColor;
+import org.apache.pdfbox.contentstream.operator.color.SetStrokingDeviceGrayColor;
+import org.apache.pdfbox.contentstream.operator.color.SetStrokingDeviceRGBColor;
+import org.apache.pdfbox.contentstream.operator.state.SetFlatness;
+import org.apache.pdfbox.contentstream.operator.state.SetLineCapStyle;
+import org.apache.pdfbox.contentstream.operator.state.SetLineDashPattern;
+import org.apache.pdfbox.contentstream.operator.state.SetLineJoinStyle;
+import org.apache.pdfbox.contentstream.operator.state.SetLineMiterLimit;
+import org.apache.pdfbox.contentstream.operator.state.SetLineWidth;
+import org.apache.pdfbox.contentstream.operator.state.SetRenderingIntent;
 import org.apache.pdfbox.contentstream.operator.text.SetFontAndSize;
 import org.apache.pdfbox.cos.COSBase;
 import org.apache.pdfbox.cos.COSName;
@@ -23,12 +40,14 @@ import org.apache.pdfbox.text.PDFTextStripper;
 import org.apache.pdfbox.text.TextPosition;
 import org.apache.pdfbox.util.Matrix;
 
-import java.awt.geom.AffineTransform;
-import java.awt.geom.Point2D;
-import java.awt.geom.Rectangle2D;
-import java.io.IOException;
-import java.util.ArrayList;
-import java.util.List;
+import com.iqser.red.service.redaction.v1.server.parsing.model.RedTextPosition;
+import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
+import com.iqser.red.service.redaction.v1.server.redaction.model.PdfImage;
+import com.iqser.red.service.redaction.v1.server.tableextraction.model.Ruling;
+
+import lombok.Getter;
+import lombok.Setter;
+import lombok.extern.slf4j.Slf4j;
 
 @Slf4j
 public class PDFLinesTextStripper extends PDFTextStripper {
@@ -189,16 +208,19 @@ public class PDFLinesTextStripper extends PDFTextStripper {
             COSName objectName = (COSName) arguments.get(0);
             PDXObject xobject = getResources().getXObject(objectName);
             if (xobject instanceof PDImageXObject) {
-                PDImageXObject image = (PDImageXObject)xobject;
+                PDImageXObject image = (PDImageXObject) xobject;
                 Matrix ctmNew = getGraphicsState().getCurrentTransformationMatrix();
 
-                Rectangle2D rect = new Rectangle2D.Float(ctmNew.getTranslateX(), ctmNew.getTranslateY(), ctmNew.getScaleX(), ctmNew.getScaleY());
+                Rectangle2D rect = new Rectangle2D.Float(ctmNew.getTranslateX(), ctmNew.getTranslateY(), ctmNew.getScaleX(), ctmNew
+                        .getScaleY());
 
                 // Memory Hack - sofReference kills me
                 FieldUtils.writeField(image, "cachedImageSubsampling", -1, true);
 
                 if (rect.getHeight() > 2 && rect.getWidth() > 2) {
-                    this.images.add(new PdfImage(image.getImage(), rect, pageNumber, image.getImage().getColorModel().hasAlpha()));
+                    this.images.add(new PdfImage(image.getImage(), rect, pageNumber, image.getImage()
+                            .getColorModel()
+                            .hasAlpha()));
                 }
             }
         } catch (Exception e) {
@@ -207,8 +229,6 @@ public class PDFLinesTextStripper extends PDFTextStripper {
     }
 
 
-
-
     private float floatValue(COSBase value) {
 
         if (value instanceof COSNumber) {
@@ -247,8 +267,16 @@ public class PDFLinesTextStripper extends PDFTextStripper {
     public void writeString(String text, List<TextPosition> textPositions) throws IOException {
 
         int startIndex = 0;
+        RedTextPosition previous = null;
+
         for (int i = 0; i <= textPositions.size() - 1; i++) {
 
+            if (!textPositionSequences.isEmpty()) {
+                previous = textPositionSequences.get(textPositionSequences.size() - 1)
+                        .getTextPositions()
+                        .get(textPositionSequences.get(textPositionSequences.size() - 1).getTextPositions().size() - 1);
+            }
+
             int charWidth = (int) textPositions.get(i).getWidthDirAdj();
             if (charWidth < minCharWidth) {
                 minCharWidth = charWidth;
@@ -267,42 +295,54 @@ public class PDFLinesTextStripper extends PDFTextStripper {
 
             if (i == 0 && (textPositions.get(i).getUnicode().equals(" ") || textPositions.get(i)
                     .getUnicode()
-                    .equals("\u00A0"))) {
+                    .equals("\u00A0") || textPositions.get(i)
+                    .getUnicode()
+                    .equals("\t"))) {
                 startIndex++;
                 continue;
             }
 
             // Strange but sometimes this is happening, for example: Metolachlor2.pdf
-            if (i > 0 && textPositions.get(i).getX() < textPositions.get(i - 1).getX()) {
+            if (i > 0 && textPositions.get(i).getXDirAdj() < textPositions.get(i - 1).getXDirAdj()) {
                 List<TextPosition> sublist = textPositions.subList(startIndex, i);
                 if (!(sublist.isEmpty() || sublist.size() == 1 && (sublist.get(0)
                         .getUnicode()
-                        .equals(" ") || sublist.get(0).getUnicode().equals("\u00A0")))) {
+                        .equals(" ") || sublist.get(0).getUnicode().equals("\u00A0") || sublist.get(0).getUnicode().equals("\t")))) {
                     textPositionSequences.add(new TextPositionSequence(sublist, pageNumber));
                 }
                 startIndex = i;
             }
 
-
-            if (textPositions.get(i).getRotation() == 0 && i > 0 && textPositions.get(i).getX() > textPositions.get(i - 1).getEndX() + 1) {
+            if (textPositions.get(i).getRotation() == 0 && i > 0 && textPositions.get(i)
+                    .getX() > textPositions.get(i - 1).getEndX() + 1) {
                 List<TextPosition> sublist = textPositions.subList(startIndex, i);
                 if (!(sublist.isEmpty() || sublist.size() == 1 && (sublist.get(0)
                         .getUnicode()
-                        .equals(" ") || sublist.get(0).getUnicode().equals("\u00A0")))) {
+                        .equals(" ") || sublist.get(0).getUnicode().equals("\u00A0") || sublist.get(0).getUnicode().equals("\t")))) {
                     textPositionSequences.add(new TextPositionSequence(sublist, pageNumber));
                 }
                 startIndex = i;
             }
 
-
             if (i > 0 && (textPositions.get(i).getUnicode().equals(" ") || textPositions.get(i)
                     .getUnicode()
-                    .equals("\u00A0")) && i <= textPositions.size() - 2) {
+                    .equals("\u00A0") || textPositions.get(i)
+                    .getUnicode()
+                    .equals("\t")) && i <= textPositions.size() - 2) {
                 List<TextPosition> sublist = textPositions.subList(startIndex, i);
                 if (!(sublist.isEmpty() || sublist.size() == 1 && (sublist.get(0)
                         .getUnicode()
-                        .equals(" ") || sublist.get(0).getUnicode().equals("\u00A0")))) {
-                    textPositionSequences.add(new TextPositionSequence(sublist, pageNumber));
+                        .equals(" ") || sublist.get(0).getUnicode().equals("\u00A0") || sublist.get(0).getUnicode().equals("\t")))) {
+
+                    // Remove false sequence ends (whitespaces)
+                    if (previous != null && sublist.get(0).getYDirAdj() == previous.getYDirAdj() && sublist.get(0)
+                            .getXDirAdj() - (previous.getXDirAdj() + previous.getWidthDirAdj()) < 0.01) {
+                        for (TextPosition t : sublist) {
+                            textPositionSequences.get(textPositionSequences.size() - 1).add(t);
+                        }
+                    } else {
+                        textPositionSequences.add(new TextPositionSequence(sublist, pageNumber));
+                    }
                 }
                 startIndex = i + 1;
             }
@@ -311,13 +351,23 @@ public class PDFLinesTextStripper extends PDFTextStripper {
         List<TextPosition> sublist = textPositions.subList(startIndex, textPositions.size());
         if (!sublist.isEmpty() && (sublist.get(sublist.size() - 1)
                 .getUnicode()
-                .equals(" ") || sublist.get(sublist.size() - 1).getUnicode().equals("\u00A0"))) {
+                .equals(" ") || sublist.get(sublist.size() - 1).getUnicode().equals("\u00A0") || sublist.get(sublist.size() - 1).getUnicode().equals("\t"))) {
             sublist = sublist.subList(0, sublist.size() - 1);
         }
+
         if (!(sublist.isEmpty() || sublist.size() == 1 && (sublist.get(0).getUnicode().equals(" ") || sublist.get(0)
                 .getUnicode()
-                .equals("\u00A0")))) {
-            textPositionSequences.add(new TextPositionSequence(sublist, pageNumber));
+                .equals("\u00A0") || sublist.get(0)
+                .getUnicode()
+                .equals("\t")))) {
+            if (previous != null && sublist.get(0).getYDirAdj() == previous.getYDirAdj() && sublist.get(0)
+                    .getXDirAdj() - (previous.getXDirAdj() + previous.getWidthDirAdj()) < 0.01) {
+                for (TextPosition t : sublist) {
+                    textPositionSequences.get(textPositionSequences.size() - 1).add(t);
+                }
+            } else {
+                textPositionSequences.add(new TextPositionSequence(sublist, pageNumber));
+            }
         }
         super.writeString(text);
     }

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/parsing/model/RedTextPosition.java

@@ -21,6 +21,8 @@ public class RedTextPosition {
     private float YDirAdj;
     private float width;
     private float heightDir;
+    private float widthDirAdj;
+    private float dir;
 
     // not used in reanalysis
     @JsonIgnore

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/parsing/model/TextPositionSequence.java

@@ -1,5 +1,7 @@
 package com.iqser.red.service.redaction.v1.server.parsing.model;
 
+import static java.util.stream.Collectors.toSet;
+
 import com.fasterxml.jackson.annotation.JsonIgnore;
 import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
 import com.iqser.red.service.redaction.v1.model.Point;
@@ -136,6 +138,13 @@ public class TextPositionSequence implements CharSequence {
     }
 
 
+    @JsonIgnore
+    public float getRotationAdjustedX() {
+
+        return textPositions.get(0).getXDirAdj();
+    }
+
+
     @JsonIgnore
     public float getY1() {
 
@@ -233,7 +242,7 @@ public class TextPositionSequence implements CharSequence {
         float posYInit;
         float posYEnd;
 
-        if (textPositions.get(0).getRotation() == 90) {
+        if (textPositions.get(0).getRotation() == 90 && textPositions.get(0).getDir() != 0.0f) {
             posXEnd = textPositions.get(0).getYDirAdj() + 2;
             posYInit = getY1();
             posYEnd = textPositions.get(textPositions.size() - 1).getXDirAdj() - height + 4;
@@ -244,9 +253,31 @@ public class TextPositionSequence implements CharSequence {
             posXInit = textPositions.get(0).getPageWidth() - textPositions.get(0).getYDirAdj() - 2;
             posXEnd = textPositions.get(0).getPageWidth() - textPositions.get(textPositions.size() - 1)
                     .getYDirAdj() + height;
-        } else {
+        } else if(textPositions.get(0).getRotation() == 0 && textPositions.get(0).getDir() == 270f) {
+            posYInit = textPositions.get(0).getPageHeight() - getX1();
+            posYEnd = textPositions.get(0).getPageHeight() - getX2() - textPositions.get(0)
+                    .getWidthDirAdj() - textPositions.get(textPositions.size() - 1).getWidthDirAdj() - 3;
+            posXInit = textPositions.get(0).getPageWidth() - textPositions.get(0).getYDirAdj() - 2;
+            posXEnd = textPositions.get(0).getPageWidth() - textPositions.get(textPositions.size() - 1)
+                    .getYDirAdj() + height;
+        } else if(textPositions.get(0).getRotation() == 90 && textPositions.get(0).getDir() == 0.0f){
+            posXInit =  textPositions.get(textPositions.size() - 1)
+                    .getXDirAdj() + textPositions.get(textPositions.size() - 1).getHeightDir();
+            posXEnd = textPositions.get(0).getXDirAdj();
+            posYInit = textPositions.get(0).getPageHeight() - textPositions.get(0).getYDirAdj() - 2;
+            posYEnd = textPositions.get(0).getPageHeight() - textPositions.get(textPositions.size() - 1)
+                    .getYDirAdj() + 2;
+        } else if(textPositions.get(0).getRotation() == 0 && textPositions.get(0).getDir() == 90f){
+            posYInit =  getX1();
+            posYEnd =   getX2() + textPositions.get(0)
+                    .getWidthDirAdj() - textPositions.get(textPositions.size() - 1).getWidthDirAdj() - 3;
+            posXInit =  textPositions.get(0).getYDirAdj() + 2;
+            posXEnd =  textPositions.get(textPositions.size() - 1)
+                    .getYDirAdj() - height;
+        }
+        else {
             posXEnd = textPositions.get(textPositions.size() - 1)
-                    .getXDirAdj() + textPositions.get(textPositions.size() - 1).getWidth() + 1;
+                    .getXDirAdj() + textPositions.get(textPositions.size() - 1).getWidthDirAdj() + 1;
             posYInit = textPositions.get(0).getPageHeight() - textPositions.get(0).getYDirAdj() - 2;
             posYEnd = textPositions.get(0).getPageHeight() - textPositions.get(textPositions.size() - 1)
                     .getYDirAdj() + 2;

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/queue/RedactionMessageReceiver.java

@@ -4,14 +4,10 @@ import com.fasterxml.jackson.core.JsonProcessingException;
 import com.fasterxml.jackson.databind.ObjectMapper;
 import com.iqser.red.service.redaction.v1.model.AnalyzeRequest;
 import com.iqser.red.service.redaction.v1.model.AnalyzeResult;
-import com.iqser.red.service.redaction.v1.model.StructureAnalyzeRequest;
 import com.iqser.red.service.redaction.v1.server.client.FileStatusProcessingUpdateClient;
-import com.iqser.red.service.redaction.v1.server.redaction.service.AnalyzeService;
-import com.iqser.red.service.redaction.v1.server.redaction.service.NerAnalyserService;
-
+import com.iqser.red.service.redaction.v1.server.redaction.service.ReanalyzeService;
 import lombok.RequiredArgsConstructor;
 import lombok.extern.slf4j.Slf4j;
-
 import org.springframework.amqp.rabbit.annotation.RabbitHandler;
 import org.springframework.amqp.rabbit.annotation.RabbitListener;
 import org.springframework.stereotype.Service;
@@ -25,10 +21,8 @@ import static com.iqser.red.service.redaction.v1.server.queue.MessagingConfigura
 public class RedactionMessageReceiver {
 
     private final ObjectMapper objectMapper;
-    private final AnalyzeService analyzeService;
+    private final ReanalyzeService reanalyzeService;
     private final FileStatusProcessingUpdateClient fileStatusProcessingUpdateClient;
-    private final NerAnalyserService nerAnalyserService;
-
 
     @RabbitHandler
     @RabbitListener(queues = REDACTION_QUEUE)
@@ -38,25 +32,15 @@ public class RedactionMessageReceiver {
         log.info("Processing analyze request: {}", analyzeRequest);
         AnalyzeResult result;
         if (analyzeRequest.isReanalyseOnlyIfPossible()) {
-            result = analyzeService.reanalyze(analyzeRequest);
-            log.info("Successfully reanalyzed dossier {} file {} took: {}", analyzeRequest.getDossierId(), analyzeRequest
-                    .getFileId(), result.getDuration());
+            result = reanalyzeService.reanalyze(analyzeRequest);
         } else {
-            // TODO Seperate stucture analysis by other queue
-            analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(analyzeRequest.getDossierId(), analyzeRequest.getFileId()));
-
-            // TODO NerEntities should be computed and stored in entity-recognition-service, should be triggered by a seperate queue after structure analysis
-            nerAnalyserService.computeNerEntities(analyzeRequest.getDossierId(), analyzeRequest.getFileId());
-
-            result = analyzeService.analyze(analyzeRequest);
-            log.info("Successfully analyzed dossier {} file {} took: {}", analyzeRequest.getDossierId(), analyzeRequest.getFileId(), result
-                    .getDuration());
+            result = reanalyzeService.analyze(analyzeRequest);
         }
+        log.info("Successfully analyzed {}", analyzeRequest);
 
         fileStatusProcessingUpdateClient.analysisSuccessful(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), result);
     }
 
-
     @RabbitHandler
     @RabbitListener(queues = REDACTION_DQL)
     public void receiveAnalyzeRequestDQL(String in) throws JsonProcessingException {

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/model/Entity.java

@@ -1,20 +1,17 @@
 package com.iqser.red.service.redaction.v1.server.redaction.model;
 
-import com.iqser.red.service.redaction.v1.model.Engine;
 import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
-
 import lombok.Data;
 import lombok.EqualsAndHashCode;
 
 import java.util.ArrayList;
-import java.util.HashSet;
 import java.util.List;
-import java.util.Set;
 
 @Data
 @EqualsAndHashCode(onlyExplicitlyIncluded = true)
 public class Entity implements ReasonHolder {
 
+
     private final String word;
     private final String type;
     private boolean redaction;
@@ -42,15 +39,8 @@ public class Entity implements ReasonHolder {
 
     private boolean isDossierDictionaryEntry;
 
-    private Set<Engine> engines = new HashSet<>();
 
-    private Set<Entity> references = new HashSet<>();
-
-
-    public Entity(String word, String type, boolean redaction, String redactionReason,
-                  List<EntityPositionSequence> positionSequences, String headline, int matchedRule, int sectionNumber,
-                  String legalBasis, boolean isDictionaryEntry, String textBefore, String textAfter, Integer start,
-                  Integer end, boolean isDossierDictionaryEntry, Set<Engine> engines, Set<Entity> references) {
+    public Entity(String word, String type, boolean redaction, String redactionReason, List<EntityPositionSequence> positionSequences, String headline, int matchedRule, int sectionNumber, String legalBasis, boolean isDictionaryEntry, String textBefore, String textAfter, Integer start, Integer end, boolean isDossierDictionaryEntry) {
 
         this.word = word;
         this.type = type;
@@ -67,13 +57,10 @@ public class Entity implements ReasonHolder {
         this.start = start;
         this.end = end;
         this.isDossierDictionaryEntry = isDossierDictionaryEntry;
-        this.engines = engines;
-        this.references = references;
     }
 
 
-    public Entity(String word, String type, Integer start, Integer end, String headline, int sectionNumber,
-                  boolean isDictionaryEntry, boolean isDossierDictionaryEntry, Engine engine) {
+    public Entity(String word, String type, Integer start, Integer end, String headline, int sectionNumber, boolean isDictionaryEntry, boolean isDossierDictionaryEntry) {
 
         this.word = word;
         this.type = type;
@@ -83,8 +70,6 @@ public class Entity implements ReasonHolder {
         this.sectionNumber = sectionNumber;
         this.isDictionaryEntry = isDictionaryEntry;
         this.isDossierDictionaryEntry = isDossierDictionaryEntry;
-        this.engines.add(engine);
     }
 
-
 }

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/model/PageEntities.java

@@ -1,23 +0,0 @@
-package com.iqser.red.service.redaction.v1.server.redaction.model;
-
-import java.util.HashMap;
-import java.util.List;
-import java.util.Map;
-import java.util.Set;
-
-import lombok.AllArgsConstructor;
-import lombok.Builder;
-import lombok.Data;
-
-@Data
-@AllArgsConstructor
-public class PageEntities {
-
-    @Builder.Default
-    private Map<Integer, List<Entity>> entitiesPerPage = new HashMap<>();
-
-    @Builder.Default
-    private Map<Integer, Set<Image>> imagesPerPage = new HashMap<>();
-
-
-}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/model/Section.java

@@ -1,7 +1,5 @@
 package com.iqser.red.service.redaction.v1.server.redaction.model;
 
-import com.iqser.red.service.redaction.v1.model.ArgumentType;
-import com.iqser.red.service.redaction.v1.model.Engine;
 import com.iqser.red.service.redaction.v1.model.FileAttribute;
 import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
 import com.iqser.red.service.redaction.v1.server.redaction.utils.EntitySearchUtils;
@@ -11,11 +9,13 @@ import lombok.Data;
 import lombok.extern.slf4j.Slf4j;
 import org.apache.commons.lang3.StringUtils;
 
-import java.lang.annotation.ElementType;
-import java.lang.annotation.Retention;
-import java.lang.annotation.RetentionPolicy;
-import java.lang.annotation.Target;
-import java.util.*;
+import java.util.ArrayList;
+import java.util.Collection;
+import java.util.HashMap;
+import java.util.HashSet;
+import java.util.List;
+import java.util.Map;
+import java.util.Set;
 import java.util.regex.Matcher;
 import java.util.regex.Pattern;
 import java.util.stream.Collectors;
@@ -59,45 +59,33 @@ public class Section {
     private List<FileAttribute> fileAttributes = new ArrayList<>();
 
 
-    @WhenCondition
-    public boolean fileAttributeByIdEquals(@Argument(ArgumentType.FILE_ATTRIBUTE) String id,
-                                           @Argument(ArgumentType.STRING) String value) {
+    public boolean fileAttributeByIdEquals(String id, String value){
         return fileAttributes != null && fileAttributes.stream().filter(attribute -> id.equals(attribute.getId()) && value.equals(attribute.getValue())).findFirst().isPresent();
     }
 
-    @WhenCondition
-    public boolean fileAttributeByPlaceholderEquals(@Argument(ArgumentType.FILE_ATTRIBUTE) String placeholder,
-                                                    @Argument(ArgumentType.STRING) String value) {
+    public boolean fileAttributeByPlaceholderEquals(String placeholder, String value){
         return fileAttributes != null && fileAttributes.stream().filter(attribute -> placeholder.equals(attribute.getPlaceholder()) && value.equals(attribute.getValue())).findFirst().isPresent();
     }
 
-    @WhenCondition
-    public boolean fileAttributeByLabelEquals(@Argument(ArgumentType.FILE_ATTRIBUTE) String label,
-                                              @Argument(ArgumentType.STRING) String value) {
+    public boolean fileAttributeByLabelEquals(String label, String value){
         return fileAttributes != null && fileAttributes.stream().filter(attribute -> label.equals(attribute.getLabel()) && value.equals(attribute.getValue())).findFirst().isPresent();
     }
 
-    @WhenCondition
-    public boolean fileAttributeByIdEqualsIgnoreCase(@Argument(ArgumentType.FILE_ATTRIBUTE) String id,
-                                                     @Argument(ArgumentType.STRING) String value) {
+
+    public boolean fileAttributeByIdEqualsIgnoreCase(String id, String value){
         return fileAttributes != null && fileAttributes.stream().filter(attribute -> id.equals(attribute.getId()) && value.equalsIgnoreCase(attribute.getValue())).findFirst().isPresent();
     }
 
-    @WhenCondition
-    public boolean fileAttributeByPlaceholderEqualsIgnoreCase(@Argument(ArgumentType.FILE_ATTRIBUTE) String placeholder,
-                                                              @Argument(ArgumentType.STRING) String value) {
+    public boolean fileAttributeByPlaceholderEqualsIgnoreCase(String placeholder, String value){
         return fileAttributes != null && fileAttributes.stream().filter(attribute -> placeholder.equals(attribute.getPlaceholder()) && value.equalsIgnoreCase(attribute.getValue())).findFirst().isPresent();
     }
 
-    @WhenCondition
-    public boolean fileAttributeByLabelEqualsIgnoreCase(@Argument(ArgumentType.FILE_ATTRIBUTE) String label,
-                                                        @Argument(ArgumentType.STRING) String value) {
+    public boolean fileAttributeByLabelEqualsIgnoreCase(String label, String value){
         return fileAttributes != null && fileAttributes.stream().filter(attribute -> label.equals(attribute.getLabel()) && value.equalsIgnoreCase(attribute.getValue())).findFirst().isPresent();
     }
 
-    @WhenCondition
-    public boolean rowEquals(@Argument(ArgumentType.STRING) String headerName,
-                             @Argument(ArgumentType.STRING) String value) {
+
+    public boolean rowEquals(String headerName, String value) {
 
         String cleanHeaderName = headerName.replaceAll("\n", "").replaceAll(" ", "").replaceAll("-", "");
 
@@ -106,36 +94,33 @@ public class Section {
                 .equals(value);
     }
 
-    @WhenCondition
-    public boolean hasTableHeader(@Argument(ArgumentType.STRING) String headerName) {
+
+    public boolean hasTableHeader(String headerName) {
 
         String cleanHeaderName = headerName.replaceAll("\n", "").replaceAll(" ", "").replaceAll("-", "");
         return tabularData != null && tabularData.containsKey(cleanHeaderName);
     }
 
-    @WhenCondition
-    public boolean matchesType(@Argument(ArgumentType.TYPE) String type) {
+
+    public boolean matchesType(String type) {
 
         return entities.stream().anyMatch(entity -> entity.getType().equals(type));
     }
 
-    @WhenCondition
-    public boolean matchesImageType(@Argument(ArgumentType.TYPE) String type) {
+
+    public boolean matchesImageType(String type) {
 
         return images.stream().anyMatch(image -> image.getType().equals(type));
     }
 
-    @WhenCondition
-    public boolean headlineContainsWord(@Argument(ArgumentType.STRING) String word) {
+
+    public boolean headlineContainsWord(String word) {
 
         return StringUtils.containsIgnoreCase(headline, word);
     }
 
-    @ThenAction
-    public void expandByRegEx(@Argument(ArgumentType.TYPE) String type,
-                              @Argument(ArgumentType.REGEX) String pattern,
-                              @Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive,
-                              @Argument(ArgumentType.INTEGER) int group) {
+
+    public void expandByRegEx(String type, String pattern, boolean patternCaseInsensitive, int group) {
 
         Pattern compiledPattern = Patterns.getCompiledPattern(pattern, patternCaseInsensitive);
 
@@ -162,11 +147,8 @@ public class Section {
         EntitySearchUtils.removeEntitiesContainedInLarger(entities);
     }
 
-    @ThenAction
-    public void redactImage(@Argument(ArgumentType.TYPE) String type,
-                            @Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
-                            @Argument(ArgumentType.STRING) String reason,
-                            @Argument(ArgumentType.LEGAL_BASIS) String legalBasis) {
+
+    public void redactImage(String type, int ruleNumber, String reason, String legalBasis) {
 
         images.forEach(image -> {
             if (image.getType().equals(type)) {
@@ -178,11 +160,8 @@ public class Section {
         });
     }
 
-    @ThenAction
-    public void redact(@Argument(ArgumentType.TYPE) String type,
-                       @Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
-                       @Argument(ArgumentType.STRING) String reason,
-                       @Argument(ArgumentType.LEGAL_BASIS) String legalBasis) {
+
+    public void redact(String type, int ruleNumber, String reason, String legalBasis) {
 
         boolean hasRecommendationDictionary = dictionaryTypes.contains(RECOMMENDATION_PREFIX + type);
 
@@ -197,10 +176,8 @@ public class Section {
         });
     }
 
-    @ThenAction
-    public void redactNotImage(@Argument(ArgumentType.TYPE) String type,
-                               @Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
-                               @Argument(ArgumentType.STRING) String reason) {
+
+    public void redactNotImage(String type, int ruleNumber, String reason) {
 
         images.forEach(image -> {
             if (image.getType().equals(type)) {
@@ -211,10 +188,8 @@ public class Section {
         });
     }
 
-    @ThenAction
-    public void redactNot(@Argument(ArgumentType.TYPE) String type,
-                          @Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
-                          @Argument(ArgumentType.STRING) String reason) {
+
+    public void redactNot(String type, int ruleNumber, String reason) {
 
         boolean hasRecommendationDictionary = dictionaryTypes.contains(RECOMMENDATION_PREFIX + type);
 
@@ -229,35 +204,8 @@ public class Section {
     }
 
 
-    @ThenAction
-    public void redactNotAndReference(@Argument(ArgumentType.TYPE) String type,
-                                      @Argument(ArgumentType.REFERENCE_TYPE) String referenceType,
-                          @Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
-                          @Argument(ArgumentType.STRING) String reason) {
-
-        boolean hasRecommendationDictionary = dictionaryTypes.contains(RECOMMENDATION_PREFIX + type);
-
-        Set<Entity> references = entities.stream().filter(entity -> entity.getType().equals(referenceType)).collect(Collectors.toSet());
-
-        entities.forEach(entity -> {
-            if (entity.getType().equals(type) || hasRecommendationDictionary && entity.getType()
-                    .equals(RECOMMENDATION_PREFIX + type)) {
-                entity.setRedaction(false);
-                entity.setMatchedRule(ruleNumber);
-                entity.setRedactionReason(reason);
-                entity.setReferences(references);
-            }
-        });
-    }
-
-
-
-    @ThenAction
-    public void expandToHintAnnotationByRegEx(@Argument(ArgumentType.TYPE) String type,
-                                              @Argument(ArgumentType.STRING) String pattern,
-                                              @Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive,
-                                              @Argument(ArgumentType.INTEGER) int group,
-                                              @Argument(ArgumentType.TYPE) String asType) {
+    public void expandToHintAnnotationByRegEx(String type, String pattern, boolean patternCaseInsensitive, int group,
+                                              String asType) {
 
         Pattern compiledPattern = Patterns.getCompiledPattern(pattern, patternCaseInsensitive);
 
@@ -282,11 +230,8 @@ public class Section {
         EntitySearchUtils.removeEntitiesContainedInLarger(entities);
     }
 
-    @ThenAction
-    public void addHintAnnotationByRegEx(@Argument(ArgumentType.REGEX) String pattern,
-                                         @Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive,
-                                         @Argument(ArgumentType.INTEGER) int group,
-                                         @Argument(ArgumentType.TYPE) String asType) {
+
+    public void addHintAnnotationByRegEx(String pattern, boolean patternCaseInsensitive, int group, String asType) {
 
         Pattern compiledPattern = Patterns.getCompiledPattern(pattern, patternCaseInsensitive);
 
@@ -301,12 +246,8 @@ public class Section {
         }
     }
 
-    @ThenAction
-    public void redactIfPrecededBy(@Argument(ArgumentType.STRING) String prefix,
-                                   @Argument(ArgumentType.TYPE) String type,
-                                   @Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
-                                   @Argument(ArgumentType.STRING) String reason,
-                                   @Argument(ArgumentType.LEGAL_BASIS) String legalBasis) {
+
+    public void redactIfPrecededBy(String prefix, String type, int ruleNumber, String reason, String legalBasis) {
 
         entities.forEach(entity -> {
             if (entity.getType().equals(type) && searchText.indexOf(prefix + entity.getWord()) != 1) {
@@ -318,32 +259,23 @@ public class Section {
         });
     }
 
-    @ThenAction
-    public void addHintAnnotation(@Argument(ArgumentType.STRING) String value,
-                                  @Argument(ArgumentType.TYPE) String asType) {
+
+    public void addHintAnnotation(String value, String asType) {
 
         Set<Entity> found = findEntities(value.trim(), asType, true, false, 0, null, null);
         EntitySearchUtils.addEntitiesIgnoreRank(entities, found);
     }
 
-    @ThenAction
-    public void addRedaction(@Argument(ArgumentType.STRING) String value,
-                             @Argument(ArgumentType.TYPE) String asType,
-                             @Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
-                             @Argument(ArgumentType.STRING) String reason,
-                             @Argument(ArgumentType.LEGAL_BASIS) String legalBasis) {
+
+    public void addRedaction(String value, String asType, int ruleNumber, String reason, String legalBasis) {
 
         Set<Entity> found = findEntities(value.trim(), asType, true, true, ruleNumber, reason, legalBasis);
         EntitySearchUtils.addEntitiesIgnoreRank(entities, found);
     }
 
-    @ThenAction
-    public void redactLineAfter(@Argument(ArgumentType.STRING) String start,
-                                @Argument(ArgumentType.TYPE) String asType,
-                                @Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
-                                @Argument(ArgumentType.BOOLEAN) boolean redactEverywhere,
-                                @Argument(ArgumentType.STRING) String reason,
-                                @Argument(ArgumentType.LEGAL_BASIS) String legalBasis) {
+
+    public void redactLineAfter(String start, String asType, int ruleNumber, boolean redactEverywhere, String reason,
+                                String legalBasis) {
 
         String[] values = StringUtils.substringsBetween(text, start, "\n");
 
@@ -361,9 +293,8 @@ public class Section {
         }
     }
 
-    @ThenAction
-    public void recommendLineAfter(@Argument(ArgumentType.STRING) String start,
-                                   @Argument(ArgumentType.TYPE) String asType) {
+
+    public void recommendLineAfter(String start, String asType) {
 
         String[] values = StringUtils.substringsBetween(text, start, "\n");
 
@@ -386,14 +317,9 @@ public class Section {
         }
     }
 
-    @ThenAction
-    public void redactByRegEx(@Argument(ArgumentType.REGEX) String pattern,
-                              @Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive,
-                              @Argument(ArgumentType.INTEGER) int group,
-                              @Argument(ArgumentType.TYPE) String asType,
-                              @Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
-                              @Argument(ArgumentType.STRING) String reason,
-                              @Argument(ArgumentType.LEGAL_BASIS) String legalBasis) {
+
+    public void redactByRegEx(String pattern, boolean patternCaseInsensitive, int group, String asType, int ruleNumber,
+                              String reason, String legalBasis) {
 
         Pattern compiledPattern = Patterns.getCompiledPattern(pattern, patternCaseInsensitive);
 
@@ -408,11 +334,8 @@ public class Section {
         }
     }
 
-    @ThenAction
-    public void addRecommendationByRegEx(@Argument(ArgumentType.REGEX) String pattern,
-                                         @Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive,
-                                         @Argument(ArgumentType.INTEGER) int group,
-                                         @Argument(ArgumentType.TYPE) String asType) {
+
+    public void addRecommendationByRegEx(String pattern, boolean patternCaseInsensitive, int group, String asType) {
 
         Pattern compiledPattern = Patterns.getCompiledPattern(pattern, patternCaseInsensitive);
 
@@ -426,14 +349,9 @@ public class Section {
         }
     }
 
-    @ThenAction
-    public void redactAndRecommendByRegEx(@Argument(ArgumentType.REGEX) String pattern,
-                                          @Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive,
-                                          @Argument(ArgumentType.INTEGER) int group,
-                                          @Argument(ArgumentType.TYPE) String asType,
-                                          @Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
-                                          @Argument(ArgumentType.STRING) String reason,
-                                          @Argument(ArgumentType.LEGAL_BASIS) String legalBasis) {
+
+    public void redactAndRecommendByRegEx(String pattern, boolean patternCaseInsensitive, int group, String asType,
+                                          int ruleNumber, String reason, String legalBasis) {
 
         Pattern compiledPattern = Patterns.getCompiledPattern(pattern, patternCaseInsensitive);
 
@@ -448,14 +366,9 @@ public class Section {
         }
     }
 
-    @ThenAction
-    public void redactBetween(@Argument(ArgumentType.STRING) String start,
-                              @Argument(ArgumentType.STRING) String stop,
-                              @Argument(ArgumentType.TYPE) String asType,
-                              @Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
-                              @Argument(ArgumentType.BOOLEAN) boolean redactEverywhere,
-                              @Argument(ArgumentType.STRING) String reason,
-                              @Argument(ArgumentType.LEGAL_BASIS) String legalBasis) {
+
+    public void redactBetween(String start, String stop, String asType, int ruleNumber, boolean redactEverywhere,
+                              String reason, String legalBasis) {
 
         String[] values = StringUtils.substringsBetween(searchText, start, stop);
 
@@ -474,14 +387,9 @@ public class Section {
         }
     }
 
-    @ThenAction
-    public void redactLinesBetween(@Argument(ArgumentType.STRING) String start,
-                                   @Argument(ArgumentType.STRING) String stop,
-                                   @Argument(ArgumentType.TYPE) String asType,
-                                   @Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
-                                   @Argument(ArgumentType.BOOLEAN) boolean redactEverywhere,
-                                   @Argument(ArgumentType.STRING) String reason,
-                                   @Argument(ArgumentType.LEGAL_BASIS) String legalBasis) {
+
+    public void redactLinesBetween(String start, String stop, String asType, int ruleNumber, boolean redactEverywhere,
+                                   String reason, String legalBasis) {
 
         String[] values = StringUtils.substringsBetween(text, start, stop);
 
@@ -508,48 +416,34 @@ public class Section {
         }
     }
 
-    @ThenAction
-    public void highlightCell(@Argument(ArgumentType.STRING) String cellHeader,
-                              @Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
-                              @Argument(ArgumentType.TYPE) String type) {
+
+    public void highlightCell(String cellHeader, int ruleNumber, String type) {
 
         annotateCell(cellHeader, ruleNumber, type, false, false, null, null);
     }
 
-    @ThenAction
-    public void redactCell(@Argument(ArgumentType.STRING) String cellHeader,
-                           @Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
-                           @Argument(ArgumentType.TYPE) String type,
-                           @Argument(ArgumentType.BOOLEAN) boolean addAsRecommendations,
-                           @Argument(ArgumentType.STRING) String reason,
-                           @Argument(ArgumentType.LEGAL_BASIS) String legalBasis) {
+
+    public void redactCell(String cellHeader, int ruleNumber, String type, boolean addAsRecommendations, String reason,
+                           String legalBasis) {
 
         annotateCell(cellHeader, ruleNumber, type, true, addAsRecommendations, reason, legalBasis);
     }
 
-    @ThenAction
-    public void redactNotCell(@Argument(ArgumentType.STRING) String cellHeader,
-                              @Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
-                              @Argument(ArgumentType.TYPE) String type,
-                              @Argument(ArgumentType.BOOLEAN) boolean addAsRecommendations,
-                              @Argument(ArgumentType.STRING) String reason) {
+
+    public void redactNotCell(String cellHeader, int ruleNumber, String type, boolean addAsRecommendations,
+                              String reason) {
 
         annotateCell(cellHeader, ruleNumber, type, false, addAsRecommendations, reason, null);
     }
 
 
-    private Set<Entity> findEntities(@Argument(ArgumentType.STRING) String value,
-                                     @Argument(ArgumentType.TYPE) String asType,
-                                     @Argument(ArgumentType.BOOLEAN) boolean caseInsensitive,
-                                     @Argument(ArgumentType.BOOLEAN) boolean redacted,
-                                     @Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
-                                     @Argument(ArgumentType.STRING) String reason,
-                                     @Argument(ArgumentType.LEGAL_BASIS) String legalBasis) {
+    private Set<Entity> findEntities(String value, String asType, boolean caseInsensitive, boolean redacted,
+                                     int ruleNumber, String reason, String legalBasis) {
 
         String text = caseInsensitive ? searchText.toLowerCase() : searchText;
         String searchValue = caseInsensitive ? value.toLowerCase() : value;
 
-        Set<Entity> found = EntitySearchUtils.find(text, Set.of(searchValue), asType, headline, sectionNumber, false, false, Engine.RULE);
+        Set<Entity> found = EntitySearchUtils.find(text, Set.of(searchValue), asType, headline, sectionNumber, true, false);
 
         found.forEach(entity -> {
             if (redacted) {
@@ -575,7 +469,7 @@ public class Section {
         } else {
             String word = value.toString();
 
-            Entity entity = new Entity(word, type, value.getRowSpanStart(), value.getRowSpanStart() + word.length(), headline, sectionNumber, false, false, Engine.RULE);
+            Entity entity = new Entity(word, type, value.getRowSpanStart(), value.getRowSpanStart() + word.length(), headline, sectionNumber, false, false);
             entity.setRedaction(redact);
             entity.setMatchedRule(ruleNumber);
             entity.setRedactionReason(reason);
@@ -613,25 +507,6 @@ public class Section {
         }
     }
 
-    @Retention(RetentionPolicy.RUNTIME)
-    @Target(ElementType.METHOD)
-    public @interface WhenCondition {
-
-    }
-
-    @Retention(RetentionPolicy.RUNTIME)
-    @Target(ElementType.METHOD)
-    public @interface ThenAction {
-
-    }
-
-    @Retention(RetentionPolicy.RUNTIME)
-    @Target(ElementType.PARAMETER)
-    public @interface Argument {
-
-        ArgumentType value() default ArgumentType.STRING;
-    }
-
 }
 
 

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/rulebuilder/RuleBuilderModelService.java

@@ -1,36 +0,0 @@
-package com.iqser.red.service.redaction.v1.server.redaction.rulebuilder;
-
-import com.iqser.red.service.redaction.v1.model.Argument;
-import com.iqser.red.service.redaction.v1.model.RuleBuilderModel;
-import com.iqser.red.service.redaction.v1.model.RuleElement;
-import com.iqser.red.service.redaction.v1.server.redaction.model.Section;
-import org.springframework.stereotype.Service;
-
-import java.lang.reflect.Method;
-import java.util.Arrays;
-import java.util.List;
-import java.util.stream.Collectors;
-
-@Service
-public class RuleBuilderModelService {
-
-    public RuleBuilderModel getRuleBuilderModel() {
-
-        var whenConditions = Arrays.stream(Section.class.getDeclaredMethods()).filter(m -> m.isAnnotationPresent(Section.WhenCondition.class)).collect(Collectors.toList());
-        var thenActions = Arrays.stream(Section.class.getDeclaredMethods()).filter(m -> m.isAnnotationPresent(Section.ThenAction.class)).collect(Collectors.toList());
-
-        RuleBuilderModel ruleBuilderModel = new RuleBuilderModel();
-
-
-        ruleBuilderModel.setWhenClauses(whenConditions.stream().map(c -> new RuleElement(c.getName(), toArguments(c))).collect(Collectors.toList()));
-        ruleBuilderModel.setThenConditions(thenActions.stream().map(c -> new RuleElement(c.getName(), toArguments(c))).collect(Collectors.toList()));
-
-        return ruleBuilderModel;
-    }
-
-    private List<Argument> toArguments(Method c) {
-        return Arrays.stream(c.getParameters())
-                .map(parameter -> new Argument(parameter.getName(), parameter.getAnnotation(Section.Argument.class).value()))
-                .collect(Collectors.toList());
-    }
-}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/service/AnalyzeResponseService.java

@@ -0,0 +1,43 @@
+package com.iqser.red.service.redaction.v1.server.redaction.service;
+
+import com.iqser.red.service.redaction.v1.model.AnalyzeResult;
+import com.iqser.red.service.redaction.v1.model.RedactionChangeLog;
+import com.iqser.red.service.redaction.v1.model.RedactionLog;
+import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
+
+import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
+import lombok.NoArgsConstructor;
+import lombok.RequiredArgsConstructor;
+import org.springframework.stereotype.Service;
+
+@Service
+@RequiredArgsConstructor
+public class AnalyzeResponseService {
+
+    private final RedactionServiceSettings redactionServiceSettings;
+
+    public AnalyzeResult createAnalyzeResponse(String dossierId, String fileId, long duration, int pageCount,
+                                               RedactionLog redactionLog, RedactionChangeLog redactionChangeLog) {
+
+
+        boolean hasUpdates = redactionChangeLog != null && redactionChangeLog.getRedactionLogEntry() != null && !redactionChangeLog
+                .getRedactionLogEntry()
+                .isEmpty() && redactionChangeLog.getRedactionLogEntry()
+                .stream()
+                .anyMatch(entry -> !entry.getType().equals("false_positive"));
+
+        return AnalyzeResult.builder()
+                .dossierId(dossierId)
+                .fileId(fileId)
+                .duration(duration)
+                .numberOfPages(pageCount)
+                .hasUpdates(hasUpdates)
+                .analysisVersion(redactionServiceSettings.getAnalysisVersion())
+                .rulesVersion(redactionLog.getRulesVersion())
+                .dictionaryVersion(redactionLog.getDictionaryVersion())
+                .legalBasisVersion(redactionLog.getLegalBasisVersion())
+                .dossierDictionaryVersion(redactionLog.getDossierDictionaryVersion())
+                .build();
+    }
+
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/service/AnalyzeService.java

@@ -1,283 +0,0 @@
-package com.iqser.red.service.redaction.v1.server.redaction.service;
-
-import java.util.HashMap;
-import java.util.HashSet;
-import java.util.List;
-import java.util.Map;
-import java.util.Set;
-import java.util.stream.Collectors;
-import java.util.stream.Stream;
-
-import org.kie.api.runtime.KieContainer;
-import org.springframework.stereotype.Service;
-import org.springframework.web.bind.annotation.RequestBody;
-
-import com.iqser.red.service.file.management.v1.api.model.FileType;
-import com.iqser.red.service.redaction.v1.model.AnalyzeRequest;
-import com.iqser.red.service.redaction.v1.model.AnalyzeResult;
-import com.iqser.red.service.redaction.v1.model.IdRemoval;
-import com.iqser.red.service.redaction.v1.model.ManualForceRedact;
-import com.iqser.red.service.redaction.v1.model.ManualImageRecategorization;
-import com.iqser.red.service.redaction.v1.model.ManualLegalBasisChange;
-import com.iqser.red.service.redaction.v1.model.ManualRedactions;
-import com.iqser.red.service.redaction.v1.model.Rectangle;
-import com.iqser.red.service.redaction.v1.model.RedactionLog;
-import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
-import com.iqser.red.service.redaction.v1.model.StructureAnalyzeRequest;
-import com.iqser.red.service.redaction.v1.server.classification.model.Document;
-import com.iqser.red.service.redaction.v1.server.classification.model.SectionText;
-import com.iqser.red.service.redaction.v1.server.classification.model.Text;
-import com.iqser.red.service.redaction.v1.server.client.LegalBasisClient;
-import com.iqser.red.service.redaction.v1.server.exception.RedactionException;
-import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
-import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryIncrement;
-import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryVersion;
-import com.iqser.red.service.redaction.v1.server.redaction.model.Image;
-import com.iqser.red.service.redaction.v1.server.redaction.model.PageEntities;
-import com.iqser.red.service.redaction.v1.server.redaction.model.RedRectangle2D;
-import com.iqser.red.service.redaction.v1.server.redaction.utils.EntitySearchUtils;
-import com.iqser.red.service.redaction.v1.server.segmentation.PdfSegmentationService;
-import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
-import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
-
-import lombok.RequiredArgsConstructor;
-import lombok.SneakyThrows;
-import lombok.extern.slf4j.Slf4j;
-
-@Slf4j
-@Service
-@RequiredArgsConstructor
-public class AnalyzeService {
-
-    private final DictionaryService dictionaryService;
-    private final DroolsExecutionService droolsExecutionService;
-    private final EntityRedactionService entityRedactionService;
-    private final RedactionLogCreatorService redactionLogCreatorService;
-    private final RedactionStorageService redactionStorageService;
-    private final PdfSegmentationService pdfSegmentationService;
-    private final RedactionChangeLogService redactionChangeLogService;
-    private final LegalBasisClient legalBasisClient;
-    private final RedactionServiceSettings redactionServiceSettings;
-    private final SectionTextBuilderService sectionTextBuilderService;
-    private final SectionGridCreatorService sectionGridCreatorService;
-    private final NerAnalyserService nerAnalyserService;
-
-
-    public void analyzeDocumentStructure(StructureAnalyzeRequest analyzeRequest) {
-
-        long startTime = System.currentTimeMillis();
-
-        var pageCount = 0;
-        Document classifiedDoc;
-
-        try {
-            var storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(analyzeRequest
-                    .getDossierId(), analyzeRequest.getFileId(), FileType.ORIGIN));
-            classifiedDoc = pdfSegmentationService.parseDocument(storedObjectStream);
-            pageCount = classifiedDoc.getPages().size();
-        } catch (Exception e) {
-            throw new RedactionException(e);
-        }
-
-        List<SectionText> sectionTexts = sectionTextBuilderService.buildSectionText(classifiedDoc);
-        sectionGridCreatorService.createSectionGrid(classifiedDoc, pageCount);
-
-        Text text = new Text(pageCount, sectionTexts);
-        redactionStorageService.storeObject(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), FileType.TEXT, text);
-        redactionStorageService.storeObject(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), FileType.SECTION_GRID, classifiedDoc
-                .getSectionGrid());
-
-        log.info("Document structure analysis successful, took: {}", System.currentTimeMillis() - startTime);
-    }
-
-
-    public AnalyzeResult analyze(AnalyzeRequest analyzeRequest) {
-
-        long startTime = System.currentTimeMillis();
-
-        var text = redactionStorageService.getText(analyzeRequest.getDossierId(), analyzeRequest.getFileId());
-        var nerEntities = redactionStorageService.getNerEntities(analyzeRequest.getDossierId(), analyzeRequest.getFileId());
-        if(redactionServiceSettings.isEnableEntityRecognition() && nerEntities == null){
-            nerAnalyserService.computeNerEntities(analyzeRequest.getDossierId(), analyzeRequest.getFileId());
-            nerEntities = redactionStorageService.getNerEntities(analyzeRequest.getDossierId(), analyzeRequest.getFileId());
-        }
-
-        dictionaryService.updateDictionary(analyzeRequest.getDossierTemplateId(), analyzeRequest.getDossierId());
-        KieContainer kieContainer = droolsExecutionService.updateRules(analyzeRequest.getDossierTemplateId());
-        long rulesVersion = droolsExecutionService.getRulesVersion(analyzeRequest.getDossierTemplateId());
-        Dictionary dictionary = dictionaryService.getDeepCopyDictionary(analyzeRequest.getDossierTemplateId(), analyzeRequest
-                .getDossierId());
-
-        PageEntities pageEntities = entityRedactionService.findEntities(dictionary, text.getSectionTexts(), kieContainer, analyzeRequest, nerEntities);
-
-        dictionaryService.updateExternalDictionary(dictionary, analyzeRequest.getDossierTemplateId());
-
-        List<RedactionLogEntry> redactionLogEntries = redactionLogCreatorService.createRedactionLog(pageEntities, text.getNumberOfPages(), analyzeRequest
-                .getDossierTemplateId());
-
-        var legalBasis = legalBasisClient.getLegalBasisMapping(analyzeRequest.getDossierTemplateId());
-        var redactionLog = new RedactionLog(redactionServiceSettings.getAnalysisVersion(), redactionLogEntries, legalBasis, dictionary
-                .getVersion()
-                .getDossierTemplateVersion(), dictionary.getVersion()
-                .getDossierVersion(), rulesVersion, legalBasisClient.getVersion(analyzeRequest.getDossierTemplateId()));
-
-        return finalizeAnalysis(analyzeRequest, startTime, redactionLog, text, dictionary.getVersion(), false);
-    }
-
-
-    @SneakyThrows
-    public AnalyzeResult reanalyze(@RequestBody AnalyzeRequest analyzeRequest) {
-
-        long startTime = System.currentTimeMillis();
-
-        var redactionLog = redactionStorageService.getRedactionLog(analyzeRequest.getDossierId(), analyzeRequest.getFileId());
-        var text = redactionStorageService.getText(analyzeRequest.getDossierId(), analyzeRequest.getFileId());
-
-        // not yet ready for reanalysis
-        if (redactionLog == null || text == null || text.getNumberOfPages() == 0) {
-            return analyze(analyzeRequest);
-        }
-
-        DictionaryIncrement dictionaryIncrement = dictionaryService.getDictionaryIncrements(analyzeRequest.getDossierTemplateId(), new DictionaryVersion(redactionLog
-                .getDictionaryVersion(), redactionLog.getDossierDictionaryVersion()), analyzeRequest.getDossierId());
-
-        Set<Integer> sectionsToReanalyse = !analyzeRequest.getSectionsToReanalyse()
-                .isEmpty() ? analyzeRequest.getSectionsToReanalyse() : findSectionsToReanalyse(dictionaryIncrement, redactionLog, text, analyzeRequest);
-
-        if (sectionsToReanalyse.isEmpty()) {
-            return finalizeAnalysis(analyzeRequest, startTime, redactionLog, text, dictionaryIncrement.getDictionaryVersion(), true);
-        }
-
-        var nerEntities = redactionStorageService.getNerEntities(analyzeRequest.getDossierId(), analyzeRequest.getFileId());
-        if(redactionServiceSettings.isEnableEntityRecognition() && nerEntities == null){
-            nerAnalyserService.computeNerEntities(analyzeRequest.getDossierId(), analyzeRequest.getFileId());
-            nerEntities = redactionStorageService.getNerEntities(analyzeRequest.getDossierId(), analyzeRequest.getFileId());
-        }
-
-        List<SectionText> reanalysisSections = text.getSectionTexts()
-                .stream()
-                .filter(sectionText -> sectionsToReanalyse.contains(sectionText.getSectionNumber()))
-                .collect(Collectors.toList());
-
-        KieContainer kieContainer = droolsExecutionService.updateRules(analyzeRequest.getDossierTemplateId());
-
-        Dictionary dictionary = dictionaryService.getDeepCopyDictionary(analyzeRequest.getDossierTemplateId(), analyzeRequest
-                .getDossierId());
-
-        PageEntities pageEntities = entityRedactionService.findEntities(dictionary, reanalysisSections, kieContainer, analyzeRequest, nerEntities);
-        var newRedactionLogEntries = redactionLogCreatorService.createRedactionLog(pageEntities, text.getNumberOfPages(), analyzeRequest
-                .getDossierTemplateId());
-
-        redactionLog.getRedactionLogEntry().removeIf(entry -> sectionsToReanalyse.contains(entry.getSectionNumber()));
-        redactionLog.getRedactionLogEntry().addAll(newRedactionLogEntries);
-        return finalizeAnalysis(analyzeRequest, startTime, redactionLog, text, dictionaryIncrement.getDictionaryVersion(), true);
-    }
-
-
-    private Set<Integer> findSectionsToReanalyse(DictionaryIncrement dictionaryIncrement, RedactionLog redactionLog,
-                                                 Text text, AnalyzeRequest analyzeRequest) {
-
-        long start = System.currentTimeMillis();
-        Set<String> relevantManuallyModifiedAnnotationIds = getRelevantManuallyModifiedAnnotationIds(analyzeRequest.getManualRedactions());
-
-        Set<Integer> sectionsToReanalyse = new HashSet<>();
-        Map<Integer, Set<Image>> imageEntries = new HashMap<>();
-        for (RedactionLogEntry entry : redactionLog.getRedactionLogEntry()) {
-            if (entry.isManual() || relevantManuallyModifiedAnnotationIds.contains(entry.getId())) {
-                sectionsToReanalyse.add(entry.getSectionNumber());
-            }
-            if (entry.isImage() || entry.getType().equals("image")) {
-                imageEntries.computeIfAbsent(entry.getSectionNumber(), x -> new HashSet<>()).add(convert(entry));
-            }
-        }
-
-        for (SectionText sectionText : text.getSectionTexts()) {
-
-            if (EntitySearchUtils.sectionContainsAny(sectionText.getText(), dictionaryIncrement.getValues())) {
-                sectionsToReanalyse.add(sectionText.getSectionNumber());
-            }
-
-        }
-
-        log.info("Should reanalyze {} sections for request: {}, took: {}", sectionsToReanalyse.size(), analyzeRequest, System.currentTimeMillis() - start);
-
-        return sectionsToReanalyse;
-    }
-
-
-    private AnalyzeResult finalizeAnalysis(@RequestBody AnalyzeRequest analyzeRequest, long startTime,
-                                           RedactionLog redactionLog, Text text, DictionaryVersion dictionaryVersion,
-                                           boolean isReanalysis) {
-
-        redactionLog.setDictionaryVersion(dictionaryVersion.getDossierTemplateVersion());
-        redactionLog.setDossierDictionaryVersion(dictionaryVersion.getDossierVersion());
-
-        excludeExcludedPages(redactionLog, analyzeRequest.getExcludedPages());
-
-        var redactionLogChange = redactionChangeLogService.computeChanges(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), redactionLog);
-        redactionStorageService.storeObject(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), FileType.REDACTION_LOG, redactionLogChange
-                .getRedactionLog());
-
-        long duration = System.currentTimeMillis() - startTime;
-
-        return AnalyzeResult.builder()
-                .dossierId(analyzeRequest.getDossierId())
-                .fileId(analyzeRequest.getFileId())
-                .duration(duration)
-                .numberOfPages(text.getNumberOfPages())
-                .hasUpdates(redactionLogChange.isHasChanges())
-                .analysisVersion(redactionServiceSettings.getAnalysisVersion())
-                .rulesVersion(redactionLog.getRulesVersion())
-                .dictionaryVersion(redactionLog.getDictionaryVersion())
-                .legalBasisVersion(redactionLog.getLegalBasisVersion())
-                .dossierDictionaryVersion(redactionLog.getDossierDictionaryVersion())
-                .wasReanalyzed(isReanalysis)
-                .build();
-    }
-
-
-    private Set<String> getRelevantManuallyModifiedAnnotationIds(ManualRedactions manualRedactions) {
-
-        if (manualRedactions == null) {
-            return new HashSet<>();
-        }
-
-        return Stream.concat(manualRedactions.getManualLegalBasisChanges()
-                .stream()
-                .map(ManualLegalBasisChange::getId), Stream.concat(manualRedactions.getImageRecategorizations()
-                .stream()
-                .map(ManualImageRecategorization::getId), Stream.concat(manualRedactions.getIdsToRemove()
-                .stream()
-                .map(IdRemoval::getId), manualRedactions.getForceRedacts().stream().map(ManualForceRedact::getId))))
-                .collect(Collectors.toSet());
-    }
-
-
-    public Image convert(RedactionLogEntry entry) {
-
-        Rectangle position = entry.getPositions().get(0);
-
-        return Image.builder()
-                .type(entry.getType())
-                .position(new RedRectangle2D(position.getTopLeft().getX(), position.getTopLeft()
-                        .getY(), position.getWidth(), position.getHeight()))
-                .sectionNumber(entry.getSectionNumber())
-                .section(entry.getSection())
-                .page(position.getPage())
-                .hasTransparency(entry.isImageHasTransparency())
-                .build();
-    }
-
-
-    private void excludeExcludedPages(RedactionLog redactionLog, Set<Integer> excludedPages) {
-
-        if (excludedPages != null && !excludedPages.isEmpty()) {
-            redactionLog.getRedactionLogEntry().forEach(entry -> entry.getPositions().forEach(pos -> {
-                if (excludedPages.contains(pos.getPage())) {
-                    entry.setExcluded(true);
-                }
-            }));
-        }
-    }
-
-}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/service/DictionaryService.java

@@ -33,7 +33,7 @@ public class DictionaryService {
 
     public DictionaryVersion updateDictionary(String dossierTemplateId, String dossierId) {
 
-        log.info("Updating dictionary data for dossierTemplate {} and dossier {}", dossierTemplateId, dossierId);
+        log.info("Updating dictionary data for: {} / {}", dossierTemplateId, dossierId);
         long dossierTemplateDictionaryVersion = dictionaryClient.getVersion(dossierTemplateId, GLOBAL_DOSSIER);
         var dossierTemplateDictionary = dictionariesByDossierTemplate.get(dossierTemplateId);
         if (dossierTemplateDictionary == null || dossierTemplateDictionaryVersion > dossierTemplateDictionary.getDictionaryVersion()) {
@@ -164,6 +164,7 @@ public class DictionaryService {
 
     public float[] getColor(String type, String dossierTemplateId) {
 
+        log.info("requested : {} / {}",type,dossierTemplateId);
         DictionaryModel model = dictionariesByDossierTemplate.get(dossierTemplateId).getLocalAccessMap().get(type);
         if (model != null) {
             return model.getColor();

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/service/EntityRedactionService.java

@@ -1,141 +1,64 @@
 package com.iqser.red.service.redaction.v1.server.redaction.service;
 
-import java.util.ArrayList;
-import java.util.HashMap;
-import java.util.HashSet;
-import java.util.List;
-import java.util.Map;
-import java.util.Set;
-import java.util.stream.Collectors;
-import java.util.stream.Stream;
-
-import org.apache.commons.codec.binary.Base64;
+import com.iqser.red.service.redaction.v1.model.*;
+import com.iqser.red.service.redaction.v1.server.classification.model.*;
+import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
+import com.iqser.red.service.redaction.v1.server.redaction.model.*;
+import com.iqser.red.service.redaction.v1.server.redaction.utils.EntitySearchUtils;
+import com.iqser.red.service.redaction.v1.server.redaction.utils.IdBuilder;
+import com.iqser.red.service.redaction.v1.server.tableextraction.model.Cell;
+import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
+import lombok.RequiredArgsConstructor;
+import lombok.extern.slf4j.Slf4j;
+import org.apache.commons.collections4.CollectionUtils;
 import org.apache.commons.lang3.StringUtils;
 import org.kie.api.runtime.KieContainer;
 import org.springframework.stereotype.Service;
 
-import com.iqser.red.service.redaction.v1.model.AnalyzeRequest;
-import com.iqser.red.service.redaction.v1.model.Engine;
-import com.iqser.red.service.redaction.v1.model.ManualImageRecategorization;
-import com.iqser.red.service.redaction.v1.model.Status;
-import com.iqser.red.service.redaction.v1.server.classification.model.SectionText;
-import com.iqser.red.service.redaction.v1.server.client.model.NerEntities;
-import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
-import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryModel;
-import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
-import com.iqser.red.service.redaction.v1.server.redaction.model.EntityPositionSequence;
-import com.iqser.red.service.redaction.v1.server.redaction.model.Image;
-import com.iqser.red.service.redaction.v1.server.redaction.model.PageEntities;
-import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
-import com.iqser.red.service.redaction.v1.server.redaction.model.Section;
-import com.iqser.red.service.redaction.v1.server.redaction.model.SectionSearchableTextPair;
-import com.iqser.red.service.redaction.v1.server.redaction.utils.EntitySearchUtils;
-import com.iqser.red.service.redaction.v1.server.redaction.utils.IdBuilder;
-import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
-
-import lombok.RequiredArgsConstructor;
-import lombok.extern.slf4j.Slf4j;
+import java.util.*;
+import java.util.concurrent.atomic.AtomicInteger;
+import java.util.stream.Collectors;
+import java.util.stream.Stream;
 
 @Slf4j
 @Service
 @RequiredArgsConstructor
 public class EntityRedactionService {
 
-    private final RedactionServiceSettings redactionServiceSettings;
+    private final DictionaryService dictionaryService;
     private final DroolsExecutionService droolsExecutionService;
     private final SurroundingWordsService surroundingWordsService;
 
 
-    public PageEntities findEntities(Dictionary dictionary, List<SectionText> sectionTexts, KieContainer kieContainer,
-                                     AnalyzeRequest analyzeRequest, NerEntities nerEntities) {
+    public void processDocument(Document classifiedDoc, String dossierTemplateId, ManualRedactions manualRedactions,
+                                String dossierId, List<FileAttribute> fileAttributes) {
 
-        Map<Integer, Set<Image>> imagesPerPage = new HashMap<>();
-        Set<Entity> entities = findEntities(sectionTexts, dictionary, kieContainer, analyzeRequest, false, null, imagesPerPage, nerEntities);
+        dictionaryService.updateDictionary(dossierTemplateId, dossierId);
+        KieContainer container = droolsExecutionService.updateRules(dossierTemplateId);
+        long rulesVersion = droolsExecutionService.getRulesVersion(dossierTemplateId);
+
+        Dictionary dictionary = dictionaryService.getDeepCopyDictionary(dossierTemplateId, dossierId);
+
+        Set<Entity> documentEntities = new HashSet<>(findEntities(classifiedDoc, container, manualRedactions, dictionary, false, null, fileAttributes));
 
         if (dictionary.hasLocalEntries()) {
-            Map<Integer, Set<Entity>> hintsPerSectionNumber = getHintsPerSection(entities, dictionary);
-            Set<Entity> foundByLocal = findEntities(sectionTexts, dictionary, kieContainer, analyzeRequest, true, hintsPerSectionNumber, imagesPerPage, nerEntities);
-            EntitySearchUtils.addEntitiesWithHigherRank(entities, foundByLocal, dictionary);
-            EntitySearchUtils.removeEntitiesContainedInLarger(entities);
+
+            Map<Integer, Set<Entity>> hintsPerSectionNumber = getHintsPerSection(documentEntities, dictionary);
+            Set<Entity> foundByLocal = findEntities(classifiedDoc, container, manualRedactions, dictionary, true, hintsPerSectionNumber, fileAttributes);
+            EntitySearchUtils.addEntitiesWithHigherRank(documentEntities, foundByLocal, dictionary);
+            EntitySearchUtils.removeEntitiesContainedInLarger(documentEntities);
         }
 
-        Map<Integer, List<Entity>> entitiesPerPage = convertToEnititesPerPage(entities);
-        return new PageEntities(entitiesPerPage, imagesPerPage);
+        classifiedDoc.setEntities(convertToEnititesPerPage(documentEntities));
+
+        dictionaryService.updateExternalDictionary(dictionary, dossierTemplateId);
+
+        classifiedDoc.setDictionaryVersion(dictionary.getVersion());
+        classifiedDoc.setRulesVersion(rulesVersion);
     }
 
 
-    public Set<Entity> findEntities(List<SectionText> reanalysisSections, Dictionary dictionary,
-                                    KieContainer kieContainer, AnalyzeRequest analyzeRequest, boolean local,
-                                    Map<Integer, Set<Entity>> hintsPerSectionNumber,
-                                    Map<Integer, Set<Image>> imagesPerPage, NerEntities nerEntities) {
-
-        List<SectionSearchableTextPair> sectionSearchableTextPairs = new ArrayList<>();
-        for (SectionText reanalysisSection : reanalysisSections) {
-
-            Set<Entity> entities = findEntities(reanalysisSection.getSearchableText(), reanalysisSection.getHeadline(), reanalysisSection
-                    .getSectionNumber(), dictionary, local, nerEntities, reanalysisSection.getCellStarts());
-
-            if (reanalysisSection.getCellStarts() != null && !reanalysisSection.getCellStarts().isEmpty()) {
-                surroundingWordsService.addSurroundingText(entities, reanalysisSection.getSearchableText(), dictionary, reanalysisSection
-                        .getCellStarts());
-            } else {
-                surroundingWordsService.addSurroundingText(entities, reanalysisSection.getSearchableText(), dictionary);
-            }
-
-            if (!local && reanalysisSection.getImages() != null && !reanalysisSection.getImages()
-                    .isEmpty() && analyzeRequest.getManualRedactions() != null && analyzeRequest.getManualRedactions()
-                    .getImageRecategorizations() != null) {
-                for (Image image : reanalysisSection.getImages()) {
-                    String imageId = IdBuilder.buildId(image.getPosition(), image.getPage());
-                    for (ManualImageRecategorization imageRecategorization : analyzeRequest.getManualRedactions()
-                            .getImageRecategorizations()) {
-                        if (imageRecategorization.getStatus().equals(Status.APPROVED) && imageRecategorization.getId()
-                                .equals(imageId)) {
-                            image.setType(imageRecategorization.getType());
-                        }
-                    }
-                }
-            }
-
-            sectionSearchableTextPairs.add(new SectionSearchableTextPair(Section.builder()
-                    .isLocal(false)
-                    .dictionaryTypes(dictionary.getTypes())
-                    .entities(hintsPerSectionNumber != null && hintsPerSectionNumber.containsKey(reanalysisSection.getSectionNumber()) ? Stream
-                            .concat(entities.stream(), hintsPerSectionNumber.get(reanalysisSection.getSectionNumber())
-                                    .stream())
-                            .collect(Collectors.toSet()) : entities)
-                    .text(reanalysisSection.getSearchableText().getAsStringWithLinebreaks())
-                    .searchText(reanalysisSection.getSearchableText().toString())
-                    .headline(reanalysisSection.getHeadline())
-                    .sectionNumber(reanalysisSection.getSectionNumber())
-                    .tabularData(reanalysisSection.getTabularData())
-                    .searchableText(reanalysisSection.getSearchableText())
-                    .dictionary(dictionary)
-                    .images(reanalysisSection.getImages())
-                    .fileAttributes(analyzeRequest.getFileAttributes())
-                    .build(), reanalysisSection.getSearchableText()));
-        }
-
-        Set<Entity> entities = new HashSet<>();
-        sectionSearchableTextPairs.forEach(sectionSearchableTextPair -> {
-            Section analysedSection = droolsExecutionService.executeRules(kieContainer, sectionSearchableTextPair.getSection());
-            EntitySearchUtils.removeEntitiesContainedInLarger(analysedSection.getEntities());
-            entities.addAll(analysedSection.getEntities());
-
-            if (!local) {
-                for (Image image : analysedSection.getImages()) {
-                    imagesPerPage.computeIfAbsent(image.getPage(), (a) -> new HashSet<>()).add(image);
-                }
-                addLocalValuesToDictionary(analysedSection, dictionary);
-            }
-        });
-
-        return entities;
-    }
-
-
-    private Map<Integer, List<Entity>> convertToEnititesPerPage(Set<Entity> entities) {
-
+    public Map<Integer, List<Entity>> convertToEnititesPerPage(Set<Entity> entities){
         Map<Integer, List<Entity>> entitiesPerPage = new HashMap<>();
         for (Entity entity : entities) {
             Map<Integer, List<EntityPositionSequence>> sequenceOnPage = new HashMap<>();
@@ -145,31 +68,87 @@ public class EntityRedactionService {
             }
 
             for (Map.Entry<Integer, List<EntityPositionSequence>> entry : sequenceOnPage.entrySet()) {
-                entitiesPerPage.computeIfAbsent(entry.getKey(), (x) -> new ArrayList<>())
+                entitiesPerPage
+                        .computeIfAbsent(entry.getKey(), (x) -> new ArrayList<>())
                         .add(new Entity(entity.getWord(), entity.getType(), entity.isRedaction(), entity.getRedactionReason(), entry
                                 .getValue(), entity.getHeadline(), entity.getMatchedRule(), entity.getSectionNumber(), entity
                                 .getLegalBasis(), entity.isDictionaryEntry(), entity.getTextBefore(), entity.getTextAfter(), entity
-                                .getStart(), entity.getEnd(), entity.isDossierDictionaryEntry(), entity.getEngines(), entity.getReferences()));
+                                .getStart(), entity.getEnd(), entity.isDossierDictionaryEntry()));
             }
         }
         return entitiesPerPage;
     }
 
 
-    private Map<Integer, Set<Entity>> getHintsPerSection(Set<Entity> entities, Dictionary dictionary) {
-
+    public Map<Integer, Set<Entity>> getHintsPerSection(Set<Entity> entities, Dictionary dictionary){
         Map<Integer, Set<Entity>> hintsPerSectionNumber = new HashMap<>();
         entities.stream().forEach(entity -> {
             if (dictionary.isHint(entity.getType()) && entity.isDictionaryEntry()) {
-                hintsPerSectionNumber.computeIfAbsent(entity.getSectionNumber(), (x) -> new HashSet<>()).add(entity);
+                hintsPerSectionNumber.computeIfAbsent(entity.getSectionNumber(), (x) -> new HashSet<>())
+                        .add(entity);
             }
         });
         return hintsPerSectionNumber;
     }
 
+    private Set<Entity> findEntities(Document classifiedDoc, KieContainer kieContainer,
+                                     ManualRedactions manualRedactions, Dictionary dictionary, boolean local,
+                                     Map<Integer, Set<Entity>> hintsPerSectionNumber,
+                                     List<FileAttribute> fileAttributes) {
 
-    private void addLocalValuesToDictionary(Section analysedSection, Dictionary dictionary) {
+        Set<Entity> documentEntities = new HashSet<>();
 
+        AtomicInteger sectionNumber = new AtomicInteger(1);
+        List<SectionSearchableTextPair> sectionSearchableTextPairs = new ArrayList<>();
+        for (Paragraph paragraph : classifiedDoc.getParagraphs()) {
+
+            List<Table> tables = paragraph.getTables();
+            for (Table table : tables) {
+                if (table.getColCount() == 2) {
+                    sectionSearchableTextPairs.addAll(processTableAsOneText(classifiedDoc, table, sectionNumber, dictionary, local, hintsPerSectionNumber, fileAttributes));
+                } else {
+                    sectionSearchableTextPairs.addAll(processTablePerRow(classifiedDoc, table, sectionNumber, dictionary, local, hintsPerSectionNumber, fileAttributes));
+                }
+                sectionNumber.incrementAndGet();
+            }
+            sectionSearchableTextPairs.add(processText(classifiedDoc, paragraph.getSearchableText(), paragraph.getTextBlocks(), paragraph
+                    .getHeadline(), manualRedactions, sectionNumber, dictionary, local, hintsPerSectionNumber, paragraph
+                    .getImages(), fileAttributes));
+            sectionNumber.incrementAndGet();
+        }
+
+        for (Header header : classifiedDoc.getHeaders()) {
+            sectionSearchableTextPairs.add(processText(classifiedDoc, header.getSearchableText(), header.getTextBlocks(), "Header", manualRedactions, sectionNumber, dictionary, local, hintsPerSectionNumber, new ArrayList<>(), fileAttributes));
+            sectionNumber.incrementAndGet();
+        }
+
+        for (Footer footer : classifiedDoc.getFooters()) {
+            sectionSearchableTextPairs.add(processText(classifiedDoc, footer.getSearchableText(), footer.getTextBlocks(), "Footer", manualRedactions, sectionNumber, dictionary, local, hintsPerSectionNumber, new ArrayList<>(), fileAttributes));
+            sectionNumber.incrementAndGet();
+        }
+
+        for (UnclassifiedText unclassifiedText : classifiedDoc.getUnclassifiedTexts()) {
+            sectionSearchableTextPairs.add(processText(classifiedDoc, unclassifiedText.getSearchableText(), unclassifiedText
+                    .getTextBlocks(), "", manualRedactions, sectionNumber, dictionary, local, hintsPerSectionNumber, new ArrayList<>(), fileAttributes));
+            sectionNumber.incrementAndGet();
+        }
+
+        sectionSearchableTextPairs.forEach(sectionSearchableTextPair -> {
+            Section analysedSection = droolsExecutionService.executeRules(kieContainer, sectionSearchableTextPair.getSection());
+            documentEntities.addAll(analysedSection.getEntities());
+
+            for (Image image : analysedSection.getImages()) {
+                classifiedDoc.getImages().computeIfAbsent(image.getPage(), (a) -> new HashSet<>()).add(image);
+            }
+
+            addLocalValuesToDictionary(analysedSection, dictionary);
+        });
+
+        return documentEntities;
+    }
+
+
+    public void addLocalValuesToDictionary(Section analysedSection, Dictionary dictionary){
         analysedSection.getLocalDictionaryAdds().keySet().forEach(key -> {
             if (dictionary.isRecommendation(key)) {
                 analysedSection.getLocalDictionaryAdds().get(key).forEach(value -> {
@@ -195,9 +174,207 @@ public class EntityRedactionService {
     }
 
 
-    private Set<Entity> findEntities(SearchableText searchableText, String headline, int sectionNumber,
-                                     Dictionary dictionary, boolean local, NerEntities nerEntities,
-                                     List<Integer> cellstarts) {
+    private List<SectionSearchableTextPair> processTablePerRow(Document classifiedDoc, Table table,
+                                                               AtomicInteger sectionNumber, Dictionary dictionary,
+                                                               boolean local,
+                                                               Map<Integer, Set<Entity>> hintsPerSectionNumber,
+                                                               List<FileAttribute> fileAttributes) {
+
+        List<SectionSearchableTextPair> sectionSearchableTextPairs = new ArrayList<>();
+
+        for (List<Cell> row : table.getRows()) {
+            SearchableText searchableRow = new SearchableText();
+            Map<String, CellValue> tabularData = new HashMap<>();
+            int start = 0;
+            List<Integer> cellStarts = new ArrayList<>();
+            SectionText sectionText = new SectionText();
+            for (Cell cell : row) {
+
+                if (CollectionUtils.isEmpty(cell.getTextBlocks())) {
+                    continue;
+                }
+
+                SectionArea sectionArea = new SectionArea(new Point((float) cell.getX(), (float) cell.getY()), (float) cell
+                        .getWidth(), (float) cell.getHeight(), cell.getTextBlocks()
+                        .get(0)
+                        .getSequences()
+                        .get(0)
+                        .getPage());
+                sectionText.getSectionAreas().add(sectionArea);
+                sectionText.getTextBlocks().addAll(cell.getTextBlocks());
+
+                int cellStart = start;
+
+                if (!cell.isHeaderCell()) {
+                    cell.getHeaderCells().forEach(headerCell -> {
+                        StringBuilder headerBuilder = new StringBuilder();
+                        headerCell.getTextBlocks().forEach(textBlock -> headerBuilder.append(textBlock.getText()));
+                        String headerName = headerBuilder.toString()
+                                .replaceAll("\n", "")
+                                .replaceAll(" ", "")
+                                .replaceAll("-", "");
+                        sectionArea.setHeader(headerName);
+                        tabularData.put(headerName, new CellValue(cell.getTextBlocks(), cellStart));
+                    });
+                }
+
+                for (TextBlock textBlock : cell.getTextBlocks()) {
+                    // TODO avoid cell overlap merging.
+                    searchableRow.addAll(textBlock.getSequences());
+                }
+                cellStarts.add(cellStart);
+                start = start + cell.toString().trim().length() + 1;
+
+            }
+            Set<Entity> rowEntities = findEntities(searchableRow, table.getHeadline(), sectionNumber.intValue(), dictionary, local);
+            surroundingWordsService.addSurroundingText(rowEntities, searchableRow, dictionary, cellStarts);
+
+            sectionSearchableTextPairs.add(new SectionSearchableTextPair(Section.builder()
+                    .isLocal(local)
+                    .dictionaryTypes(dictionary.getTypes())
+                    .entities(hintsPerSectionNumber != null && hintsPerSectionNumber.containsKey(sectionNumber.intValue()) ? Stream
+                            .concat(rowEntities.stream(), hintsPerSectionNumber.get(sectionNumber.intValue()).stream())
+                            .collect(Collectors.toSet()) : rowEntities)
+                    .text(searchableRow.getAsStringWithLinebreaks())
+                    .searchText(searchableRow.toString())
+                    .headline(table.getHeadline())
+                    .sectionNumber(sectionNumber.intValue())
+                    .tabularData(tabularData)
+                    .searchableText(searchableRow)
+                    .dictionary(dictionary)
+                    .fileAttributes(fileAttributes)
+                    .build(), searchableRow));
+
+            if (!local) {
+                sectionText.setText(searchableRow.toString());
+                sectionText.setHeadline(table.getHeadline());
+                sectionText.setSectionNumber(sectionNumber.intValue());
+                sectionText.setTable(true);
+                sectionText.setTabularData(tabularData);
+                sectionText.setCellStarts(cellStarts);
+                classifiedDoc.getSectionText().add(sectionText);
+            }
+
+            sectionNumber.incrementAndGet();
+        }
+
+        return sectionSearchableTextPairs;
+    }
+
+
+    private List<SectionSearchableTextPair> processTableAsOneText(Document classifiedDoc, Table table,
+                                                                  AtomicInteger sectionNumber, Dictionary dictionary,
+                                                                  boolean local,
+                                                                  Map<Integer, Set<Entity>> hintsPerSectionNumber,
+                                                                  List<FileAttribute> fileAttributes) {
+
+        List<SectionSearchableTextPair> sectionSearchableTextPairs = new ArrayList<>();
+        SearchableText entireTableText = new SearchableText();
+        SectionText sectionText = new SectionText();
+        for (List<Cell> row : table.getRows()) {
+            for (Cell cell : row) {
+                if (CollectionUtils.isEmpty(cell.getTextBlocks())) {
+                    continue;
+                }
+
+                if (!local) {
+                    SectionArea sectionArea = new SectionArea(new Point((float) cell.getX(), (float) cell.getY()), (float) cell
+                            .getWidth(), (float) cell.getHeight(), cell.getTextBlocks()
+                            .get(0)
+                            .getSequences()
+                            .get(0)
+                            .getPage());
+                    sectionText.getTextBlocks().addAll(cell.getTextBlocks());
+                    sectionText.getSectionAreas().add(sectionArea);
+                }
+
+                for (TextBlock textBlock : cell.getTextBlocks()) {
+                    entireTableText.addAll(textBlock.getSequences());
+                }
+            }
+        }
+
+        Set<Entity> rowEntities = findEntities(entireTableText, table.getHeadline(), sectionNumber.intValue(), dictionary, local);
+        surroundingWordsService.addSurroundingText(rowEntities, entireTableText, dictionary);
+
+        sectionSearchableTextPairs.add(new SectionSearchableTextPair(Section.builder()
+                .isLocal(local)
+                .dictionaryTypes(dictionary.getTypes())
+                .entities(hintsPerSectionNumber != null && hintsPerSectionNumber.containsKey(sectionNumber.intValue()) ? Stream
+                        .concat(rowEntities.stream(), hintsPerSectionNumber.get(sectionNumber.intValue()).stream())
+                        .collect(Collectors.toSet()) : rowEntities)
+                .text(entireTableText.getAsStringWithLinebreaks())
+                .searchText(entireTableText.toString())
+                .headline(table.getHeadline())
+                .sectionNumber(sectionNumber.intValue())
+                .searchableText(entireTableText)
+                .dictionary(dictionary)
+                .fileAttributes(fileAttributes)
+                .build(), entireTableText));
+
+        if (!local) {
+            sectionText.setText(entireTableText.toString());
+            sectionText.setHeadline(table.getHeadline());
+            sectionText.setSectionNumber(sectionNumber.intValue());
+            sectionText.setTable(true);
+            classifiedDoc.getSectionText().add(sectionText);
+        }
+
+        return sectionSearchableTextPairs;
+    }
+
+
+    private SectionSearchableTextPair processText(Document classifiedDoc, SearchableText searchableText,
+                                                  List<TextBlock> paragraphTextBlocks, String headline,
+                                                  ManualRedactions manualRedactions, AtomicInteger sectionNumber,
+                                                  Dictionary dictionary, boolean local,
+                                                  Map<Integer, Set<Entity>> hintsPerSectionNumber,
+                                                  List<PdfImage> images, List<FileAttribute> fileAttributes) {
+
+        if (!local) {
+            SectionText sectionText = new SectionText();
+            for (TextBlock paragraphTextBlock : paragraphTextBlocks) {
+                SectionArea sectionArea = new SectionArea(new Point(paragraphTextBlock.getMinX(), paragraphTextBlock.getMinY()), paragraphTextBlock
+                        .getWidth(), paragraphTextBlock.getHeight(), paragraphTextBlock.getPage());
+                sectionText.getSectionAreas().add(sectionArea);
+            }
+
+            sectionText.setText(searchableText.toString());
+            sectionText.setHeadline(headline);
+            sectionText.setSectionNumber(sectionNumber.intValue());
+            sectionText.setTable(false);
+            sectionText.setImages(images.stream()
+                    .map(image -> convertAndRecategorize(image, sectionNumber.intValue(), headline, manualRedactions))
+                    .collect(Collectors.toSet()));
+            sectionText.setTextBlocks(paragraphTextBlocks);
+            classifiedDoc.getSectionText().add(sectionText);
+        }
+
+        Set<Entity> entities = findEntities(searchableText, headline, sectionNumber.intValue(), dictionary, local);
+        surroundingWordsService.addSurroundingText(entities, searchableText, dictionary);
+
+        return new SectionSearchableTextPair(Section.builder()
+                .isLocal(local)
+                .dictionaryTypes(dictionary.getTypes())
+                .entities(hintsPerSectionNumber != null && hintsPerSectionNumber.containsKey(sectionNumber.intValue()) ? Stream
+                        .concat(entities.stream(), hintsPerSectionNumber.get(sectionNumber.intValue()).stream())
+                        .collect(Collectors.toSet()) : entities)
+                .text(searchableText.getAsStringWithLinebreaks())
+                .searchText(searchableText.toString())
+                .headline(headline)
+                .sectionNumber(sectionNumber.intValue())
+                .searchableText(searchableText)
+                .dictionary(dictionary)
+                .images(images.stream()
+                        .map(image -> convertAndRecategorize(image, sectionNumber.intValue(), headline, manualRedactions))
+                        .collect(Collectors.toSet()))
+                .fileAttributes(fileAttributes)
+                .build(), searchableText);
+    }
+
+
+    public Set<Entity> findEntities(SearchableText searchableText, String headline, int sectionNumber,
+                                    Dictionary dictionary, boolean local) {
 
         Set<Entity> found = new HashSet<>();
         String searchableString = searchableText.toString();
@@ -208,52 +385,42 @@ public class EntityRedactionService {
         String lowercaseInputString = searchableString.toLowerCase();
         for (DictionaryModel model : dictionary.getDictionaryModels()) {
             if (model.isCaseInsensitive()) {
-                EntitySearchUtils.addOrAddEngine(found, EntitySearchUtils.find(lowercaseInputString, model.getValues(local), model
-                        .getType(), headline, sectionNumber, !local, model.isDossierDictionary(), Engine.DICTIONARY));
+                found.addAll(EntitySearchUtils.find(lowercaseInputString, model.getValues(local), model.getType(), headline, sectionNumber, local, model
+                        .isDossierDictionary()));
             } else {
-                EntitySearchUtils.addOrAddEngine(found, EntitySearchUtils.find(searchableString, model.getValues(local), model
-                        .getType(), headline, sectionNumber, !local, model.isDossierDictionary(), Engine.DICTIONARY));
+                found.addAll(EntitySearchUtils.find(searchableString, model.getValues(local), model.getType(), headline, sectionNumber, local, model
+                        .isDossierDictionary()));
             }
         }
 
-        if (!local) {
-            Map<String, Set<String>> nerValuesPerType = getNerValues(sectionNumber, nerEntities, cellstarts);
-            nerValuesPerType.entrySet().forEach(entry -> {
-                EntitySearchUtils.addOrAddEngine(found, EntitySearchUtils.find(searchableString, entry.getValue(), entry
-                        .getKey(), headline, sectionNumber, false, false, Engine.NER));
-            });
-        }
-
         return EntitySearchUtils.clearAndFindPositions(found, searchableText, dictionary);
     }
 
 
-    private Map<String, Set<String>> getNerValues(int sectionNumber, NerEntities nerEntities,
-                                                  List<Integer> cellstarts) {
+    private Image convertAndRecategorize(PdfImage pdfImage, int sectionNumber, String headline, ManualRedactions manualRedactions) {
 
-        Map<String, Set<String>> nerValuesPerType = new HashMap<>();
+        Image image = Image.builder()
+                .type(pdfImage.getImageType().equals(ImageType.OTHER) ? "image" : pdfImage.getImageType()
+                        .name()
+                        .toLowerCase(Locale.ROOT))
+                .position(pdfImage.getPosition())
+                .sectionNumber(sectionNumber)
+                .section(headline)
+                .page(pdfImage.getPage())
+                .hasTransparency(pdfImage.isHasTransparency())
+                .build();
 
-        if (redactionServiceSettings.isEnableEntityRecognition() && nerEntities.getResult()
-                .containsKey(sectionNumber)) {
-            nerEntities.getResult().get(sectionNumber).forEach(res -> {
-                if (cellstarts == null || cellstarts.isEmpty()) {
-                    nerValuesPerType.computeIfAbsent(res.getType(), (a) -> new HashSet<>())
-                            .add(new String(Base64.decodeBase64(res.getValue().getBytes())));
-                } else {
-                    boolean intersectsCellStart = false;
-                    for (Integer cellStart : cellstarts) {
-                        if (res.getStartOffset() < cellStart && cellStart < res.getEndOffset()) {
-                            intersectsCellStart = true;
-                        }
-                    }
-                    if (!intersectsCellStart) {
-                        nerValuesPerType.computeIfAbsent(res.getType(), (a) -> new HashSet<>())
-                                .add(new String(Base64.decodeBase64(res.getValue().getBytes())));
-                    }
+        String imageId = IdBuilder.buildId(image.getPosition(), image.getPage());
+        if (manualRedactions != null && manualRedactions.getImageRecategorizations() != null) {
+            for (ManualImageRecategorization imageRecategorization : manualRedactions.getImageRecategorizations()) {
+                if (imageRecategorization.getStatus().equals(Status.APPROVED) && imageRecategorization.getId()
+                        .equals(imageId)) {
+                    image.setType(imageRecategorization.getType());
                 }
-            });
+            }
         }
-        return nerValuesPerType;
+
+        return image;
     }
 
 }

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/service/NerAnalyserService.java

@@ -1,51 +0,0 @@
-package com.iqser.red.service.redaction.v1.server.redaction.service;
-
-import java.util.stream.Collectors;
-
-import org.apache.commons.codec.binary.Base64;
-import org.springframework.stereotype.Service;
-
-import com.iqser.red.service.file.management.v1.api.model.FileType;
-import com.iqser.red.service.redaction.v1.server.client.EntityRecognitionClient;
-import com.iqser.red.service.redaction.v1.server.client.model.EntityRecognitionRequest;
-import com.iqser.red.service.redaction.v1.server.client.model.EntityRecognitionSection;
-import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
-import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
-
-import lombok.RequiredArgsConstructor;
-import lombok.extern.slf4j.Slf4j;
-
-@Slf4j
-@Service
-@RequiredArgsConstructor
-public class NerAnalyserService {
-
-    private final RedactionStorageService redactionStorageService;
-    private final EntityRecognitionClient entityRecognitionClient;
-    private final RedactionServiceSettings redactionServiceSettings;
-
-    public void computeNerEntities(String dossierId, String fileId) {
-
-        if (redactionServiceSettings.isEnableEntityRecognition()) {
-            var text = redactionStorageService.getText(dossierId, fileId);
-
-            long start = System.currentTimeMillis();
-
-            var nerRequest = EntityRecognitionRequest.builder()
-                    .data(text.getSectionTexts()
-                            .stream()
-                            .map(sectionText -> new EntityRecognitionSection(sectionText.getSectionNumber(), new String(Base64
-                                    .encodeBase64(sectionText
-                                    .getText().getBytes()))))
-                            .collect(Collectors.toList()))
-                    .build();
-
-            var nerResponse = entityRecognitionClient.findAuthors(nerRequest);
-
-            log.info("Computing NER entities took: {} ms for dossierId {} and fileId {}", System.currentTimeMillis() - start, dossierId, fileId);
-
-            redactionStorageService.storeObject(dossierId, fileId, FileType.NER_ENTITIES, nerResponse);
-        }
-    }
-
-}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/service/ReanalyzeService.java

@@ -0,0 +1,330 @@
+package com.iqser.red.service.redaction.v1.server.redaction.service;
+
+import com.iqser.red.service.file.management.v1.api.model.FileType;
+import com.iqser.red.service.redaction.v1.model.*;
+import com.iqser.red.service.redaction.v1.server.classification.model.Document;
+import com.iqser.red.service.redaction.v1.server.classification.model.SectionText;
+import com.iqser.red.service.redaction.v1.server.classification.model.Text;
+import com.iqser.red.service.redaction.v1.server.client.LegalBasisClient;
+import com.iqser.red.service.redaction.v1.server.exception.RedactionException;
+import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
+import com.iqser.red.service.redaction.v1.server.redaction.model.*;
+import com.iqser.red.service.redaction.v1.server.redaction.utils.EntitySearchUtils;
+import com.iqser.red.service.redaction.v1.server.redaction.utils.IdBuilder;
+import com.iqser.red.service.redaction.v1.server.segmentation.PdfSegmentationService;
+import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
+import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
+import lombok.RequiredArgsConstructor;
+import lombok.SneakyThrows;
+import lombok.extern.slf4j.Slf4j;
+import org.kie.api.runtime.KieContainer;
+import org.springframework.stereotype.Service;
+import org.springframework.web.bind.annotation.RequestBody;
+
+import java.util.*;
+import java.util.stream.Collectors;
+import java.util.stream.Stream;
+
+@Slf4j
+@Service
+@RequiredArgsConstructor
+public class ReanalyzeService {
+
+    private final DictionaryService dictionaryService;
+    private final DroolsExecutionService droolsExecutionService;
+    private final SurroundingWordsService surroundingWordsService;
+    private final EntityRedactionService entityRedactionService;
+    private final RedactionLogCreatorService redactionLogCreatorService;
+    private final RedactionStorageService redactionStorageService;
+    private final PdfSegmentationService pdfSegmentationService;
+    private final RedactionChangeLogService redactionChangeLogService;
+    private final AnalyzeResponseService analyzeResponseService;
+    private final LegalBasisClient legalBasisClient;
+    private final RedactionServiceSettings redactionServiceSettings;
+
+
+    public AnalyzeResult analyze(AnalyzeRequest analyzeRequest) {
+
+        long startTime = System.currentTimeMillis();
+
+        var pageCount = 0;
+        Document classifiedDoc;
+
+        try {
+            var storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(analyzeRequest
+                    .getDossierId(), analyzeRequest.getFileId(), FileType.ORIGIN));
+            classifiedDoc = pdfSegmentationService.parseDocument(storedObjectStream);
+            pageCount = classifiedDoc.getPages().size();
+        } catch (Exception e) {
+            throw new RedactionException(e);
+        }
+        log.info("Document structure analysis successful, starting redaction analysis...");
+
+        entityRedactionService.processDocument(classifiedDoc, analyzeRequest.getDossierTemplateId(), analyzeRequest.getManualRedactions(), analyzeRequest
+                .getDossierId(), analyzeRequest.getFileAttributes());
+        redactionLogCreatorService.createRedactionLog(classifiedDoc, pageCount, analyzeRequest.getDossierTemplateId());
+
+        log.info("Redaction analysis successful...");
+
+        var legalBasis = legalBasisClient.getLegalBasisMapping(analyzeRequest.getDossierTemplateId());
+        var redactionLog = new RedactionLog(redactionServiceSettings.getAnalysisVersion(), classifiedDoc.getRedactionLogEntities(), legalBasis, classifiedDoc.getDictionaryVersion()
+                .getDossierTemplateVersion(), classifiedDoc.getDictionaryVersion()
+                .getDossierVersion(), classifiedDoc.getRulesVersion(), legalBasisClient.getVersion(analyzeRequest.getDossierTemplateId()));
+
+        excludeExcludedPages(redactionLog, analyzeRequest.getExcludedPages());
+
+        log.info("Analyzed with rules {} and dictionary {} for dossierTemplate: {}", classifiedDoc.getRulesVersion(), classifiedDoc
+                .getDictionaryVersion(), analyzeRequest.getDossierTemplateId());
+
+        // first create changelog - this only happens when we migrate files analyzed via the old process and we don't want to loose changeLog data
+        var changeLog = redactionChangeLogService.createAndStoreChangeLog(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), redactionLog);
+        // store redactionLog
+        redactionStorageService.storeObject(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), FileType.REDACTION_LOG, redactionLog);
+        redactionStorageService.storeObject(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), FileType.TEXT, new Text(pageCount, classifiedDoc
+                .getSectionText()));
+
+        // enhance section grid with headline data
+        classifiedDoc.getSectionText().forEach(sectionText -> {
+            classifiedDoc
+                    .getSectionGrid().getSections().add(new SectionGrid.SectionGridSection(sectionText.getSectionNumber(),
+                            sectionText.getHeadline(),
+                            sectionText.getSectionAreas().stream().map(SectionArea::getPage).collect(Collectors.toSet()),
+                            sectionText.getSectionAreas()));
+        });
+        redactionStorageService.storeObject(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), FileType.SECTION_GRID, classifiedDoc
+                .getSectionGrid());
+
+        long duration = System.currentTimeMillis() - startTime;
+        return analyzeResponseService.createAnalyzeResponse(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), duration, pageCount, redactionLog, changeLog);
+    }
+
+
+    @SneakyThrows
+    public AnalyzeResult reanalyze(@RequestBody AnalyzeRequest analyzeRequest) {
+
+        long startTime = System.currentTimeMillis();
+
+        var redactionLog = redactionStorageService.getRedactionLog(analyzeRequest.getDossierId(), analyzeRequest.getFileId());
+        var text = redactionStorageService.getText(analyzeRequest.getDossierId(), analyzeRequest.getFileId());
+
+        // not yet ready for reanalysis
+        if (redactionLog == null || text == null || text.getNumberOfPages() == 0) {
+            return analyze(analyzeRequest);
+        }
+
+        DictionaryIncrement dictionaryIncrement = dictionaryService.getDictionaryIncrements(analyzeRequest.getDossierTemplateId(), new DictionaryVersion(redactionLog
+                .getDictionaryVersion(), redactionLog.getDossierDictionaryVersion()), analyzeRequest.getDossierId());
+
+        Set<Integer> sectionsToReanalyse = !analyzeRequest.getSectionsToReanalyse().isEmpty() ? analyzeRequest.getSectionsToReanalyse() :
+                findSectionsToReanalyse(dictionaryIncrement, redactionLog, text, analyzeRequest);
+
+        if (sectionsToReanalyse.isEmpty()) {
+            return finalizeAnalysis(analyzeRequest, startTime, redactionLog, text, dictionaryIncrement);
+        }
+
+        List<SectionText> reanalysisSections = text.getSectionTexts()
+                .stream()
+                .filter(sectionText -> sectionsToReanalyse.contains(sectionText.getSectionNumber()))
+                .collect(Collectors.toList());
+
+        KieContainer kieContainer = droolsExecutionService.updateRules(analyzeRequest.getDossierTemplateId());
+
+        Dictionary dictionary = dictionaryService.getDeepCopyDictionary(analyzeRequest.getDossierTemplateId(), analyzeRequest
+                .getDossierId());
+
+        Map<Integer, Set<Image>> imagesPerPage = new HashMap<>();
+        Set<Entity> entities = findEntities(reanalysisSections, dictionary, kieContainer, analyzeRequest, false, null, imagesPerPage);
+
+        if (dictionary.hasLocalEntries()) {
+            Map<Integer, Set<Entity>> hintsPerSectionNumber = entityRedactionService.getHintsPerSection(entities, dictionary);
+            Set<Entity> foundByLocal = findEntities(reanalysisSections, dictionary, kieContainer, analyzeRequest, true, hintsPerSectionNumber, imagesPerPage);
+            EntitySearchUtils.addEntitiesWithHigherRank(entities, foundByLocal, dictionary);
+            EntitySearchUtils.removeEntitiesContainedInLarger(entities);
+        }
+
+        Map<Integer, List<Entity>> entitiesPerPage = entityRedactionService.convertToEnititesPerPage(entities);
+
+        List<RedactionLogEntry> newRedactionLogEntries = new ArrayList<>();
+        for (int page = 1; page <= text.getNumberOfPages(); page++) {
+            if (entitiesPerPage.get(page) != null) {
+                newRedactionLogEntries.addAll(redactionLogCreatorService.addEntries(entitiesPerPage, page, analyzeRequest
+                        .getDossierTemplateId()));
+            }
+
+            if (imagesPerPage.get(page) != null) {
+                newRedactionLogEntries.addAll(redactionLogCreatorService.addImageEntries(imagesPerPage, page, analyzeRequest
+                        .getDossierTemplateId()));
+            }
+
+        }
+
+        redactionLog.getRedactionLogEntry().removeIf(entry -> sectionsToReanalyse.contains(entry.getSectionNumber()));
+        redactionLog.getRedactionLogEntry().addAll(newRedactionLogEntries);
+        AnalyzeResult analyzeResult = finalizeAnalysis(analyzeRequest, startTime, redactionLog, text, dictionaryIncrement);
+        analyzeResult.setWasReanalyzed(true);
+        return analyzeResult;
+    }
+
+
+    private Set<Integer> findSectionsToReanalyse(DictionaryIncrement dictionaryIncrement, RedactionLog redactionLog,
+                                                 Text text, AnalyzeRequest analyzeRequest) {
+
+        Set<String> relevantManuallyModifiedAnnotationIds = getRelevantManuallyModifiedAnnotationIds(analyzeRequest.getManualRedactions());
+
+        Set<Integer> sectionsToReanalyse = new HashSet<>();
+        Map<Integer, Set<Image>> imageEntries = new HashMap<>();
+        for (RedactionLogEntry entry : redactionLog.getRedactionLogEntry()) {
+            if (entry.isManual() || relevantManuallyModifiedAnnotationIds.contains(entry.getId())) {
+                sectionsToReanalyse.add(entry.getSectionNumber());
+            }
+            if (entry.isImage() || entry.getType().equals("image")) {
+                imageEntries.computeIfAbsent(entry.getSectionNumber(), x -> new HashSet<>()).add(convert(entry));
+            }
+        }
+
+        for (SectionText sectionText : text.getSectionTexts()) {
+
+            if (EntitySearchUtils.sectionContainsAny(sectionText.getText(), dictionaryIncrement.getValues())) {
+                sectionsToReanalyse.add(sectionText.getSectionNumber());
+            }
+
+        }
+
+        log.info("Should reanalyze {} sections for request: {}", sectionsToReanalyse.size(), analyzeRequest);
+
+        return sectionsToReanalyse;
+    }
+
+
+    private Set<Entity> findEntities(List<SectionText> reanalysisSections, Dictionary dictionary,
+                                     KieContainer kieContainer, AnalyzeRequest analyzeRequest, boolean local,
+                                     Map<Integer, Set<Entity>> hintsPerSectionNumber,
+                                     Map<Integer, Set<Image>> imagesPerPage) {
+
+        List<SectionSearchableTextPair> sectionSearchableTextPairs = new ArrayList<>();
+        for (SectionText reanalysisSection : reanalysisSections) {
+
+            Set<Entity> entities = entityRedactionService.findEntities(reanalysisSection.getSearchableText(), reanalysisSection
+                    .getHeadline(), reanalysisSection.getSectionNumber(), dictionary, local);
+            if (reanalysisSection.getCellStarts() != null && !reanalysisSection.getCellStarts().isEmpty()) {
+                surroundingWordsService.addSurroundingText(entities, reanalysisSection.getSearchableText(), dictionary, reanalysisSection
+                        .getCellStarts());
+            } else {
+                surroundingWordsService.addSurroundingText(entities, reanalysisSection.getSearchableText(), dictionary);
+            }
+
+            if (!local && reanalysisSection.getImages() != null && !reanalysisSection.getImages()
+                    .isEmpty() && analyzeRequest.getManualRedactions() != null && analyzeRequest.getManualRedactions()
+                    .getImageRecategorizations() != null) {
+                for (Image image : reanalysisSection.getImages()) {
+                    String imageId = IdBuilder.buildId(image.getPosition(), image.getPage());
+                    for (ManualImageRecategorization imageRecategorization : analyzeRequest.getManualRedactions()
+                            .getImageRecategorizations()) {
+                        if (imageRecategorization.getStatus().equals(Status.APPROVED) && imageRecategorization.getId()
+                                .equals(imageId)) {
+                            image.setType(imageRecategorization.getType());
+                        }
+                    }
+                }
+            }
+
+            sectionSearchableTextPairs.add(new SectionSearchableTextPair(Section.builder()
+                    .isLocal(false)
+                    .dictionaryTypes(dictionary.getTypes())
+                    .entities(hintsPerSectionNumber != null && hintsPerSectionNumber.containsKey(reanalysisSection.getSectionNumber()) ? Stream
+                            .concat(entities.stream(), hintsPerSectionNumber.get(reanalysisSection.getSectionNumber())
+                                    .stream())
+                            .collect(Collectors.toSet()) : entities)
+                    .text(reanalysisSection.getSearchableText().getAsStringWithLinebreaks())
+                    .searchText(reanalysisSection.getSearchableText().toString())
+                    .headline(reanalysisSection.getHeadline())
+                    .sectionNumber(reanalysisSection.getSectionNumber())
+                    .tabularData(reanalysisSection.getTabularData())
+                    .searchableText(reanalysisSection.getSearchableText())
+                    .dictionary(dictionary)
+                    .images(reanalysisSection.getImages())
+                    .fileAttributes(analyzeRequest.getFileAttributes())
+                    .build(), reanalysisSection.getSearchableText()));
+        }
+
+        Set<Entity> entities = new HashSet<>();
+        sectionSearchableTextPairs.forEach(sectionSearchableTextPair -> {
+            Section analysedSection = droolsExecutionService.executeRules(kieContainer, sectionSearchableTextPair.getSection());
+            entities.addAll(analysedSection.getEntities());
+            EntitySearchUtils.removeEntitiesContainedInLarger(entities);
+
+            for (Image image : analysedSection.getImages()) {
+                imagesPerPage.computeIfAbsent(image.getPage(), (a) -> new HashSet<>()).add(image);
+            }
+
+            entityRedactionService.addLocalValuesToDictionary(analysedSection, dictionary);
+        });
+
+        return entities;
+    }
+
+
+    private AnalyzeResult finalizeAnalysis(@RequestBody AnalyzeRequest analyzeRequest, long startTime,
+                                           RedactionLog redactionLog, Text text,
+                                           DictionaryIncrement dictionaryIncrement) {
+
+        redactionLog.setDictionaryVersion(dictionaryIncrement.getDictionaryVersion().getDossierTemplateVersion());
+        redactionLog.setDossierDictionaryVersion(dictionaryIncrement.getDictionaryVersion().getDossierVersion());
+
+        excludeExcludedPages(redactionLog, analyzeRequest.getExcludedPages());
+
+        var changeLog = redactionChangeLogService.createAndStoreChangeLog(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), redactionLog);
+        redactionStorageService.storeObject(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), FileType.REDACTION_LOG, redactionLog);
+
+        long duration = System.currentTimeMillis() - startTime;
+
+        return analyzeResponseService.createAnalyzeResponse(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), duration, text
+                .getNumberOfPages(), redactionLog, changeLog);
+    }
+
+
+    private Set<String> getRelevantManuallyModifiedAnnotationIds(ManualRedactions manualRedactions) {
+
+        if (manualRedactions == null) {
+            return new HashSet<>();
+        }
+
+        return Stream.concat(manualRedactions.getManualLegalBasisChanges()
+                        .stream()
+                        .map(ManualLegalBasisChange::getId), Stream.concat(manualRedactions.getImageRecategorizations()
+                        .stream()
+                        .map(ManualImageRecategorization::getId), Stream.concat(manualRedactions.getIdsToRemove()
+                        .stream()
+                        .map(IdRemoval::getId), manualRedactions.getForceRedacts().stream().map(ManualForceRedact::getId))))
+                .collect(Collectors.toSet());
+    }
+
+
+    public Image convert(RedactionLogEntry entry) {
+
+        Rectangle position = entry.getPositions().get(0);
+
+        return Image.builder()
+                .type(entry.getType())
+                .position(new RedRectangle2D(position.getTopLeft().getX(), position.getTopLeft()
+                        .getY(), position.getWidth(), position.getHeight()))
+                .sectionNumber(entry.getSectionNumber())
+                .section(entry.getSection())
+                .page(position.getPage())
+                .hasTransparency(entry.isImageHasTransparency())
+                .build();
+    }
+
+
+    private void excludeExcludedPages(RedactionLog redactionLog, Set<Integer> excludedPages) {
+
+        if (excludedPages != null && !excludedPages.isEmpty()) {
+            redactionLog.getRedactionLogEntry().forEach(entry -> entry.getPositions().forEach(pos -> {
+                if (excludedPages.contains(pos.getPage())) {
+                    entry.setExcluded(true);
+                }
+            }));
+        }
+    }
+
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/service/RedactionChangeLogService.java

@@ -1,25 +1,19 @@
 package com.iqser.red.service.redaction.v1.server.redaction.service;
 
-import java.time.OffsetDateTime;
-import java.util.ArrayList;
-import java.util.HashMap;
-import java.util.HashSet;
-import java.util.List;
-import java.util.Map;
-import java.util.Set;
-import java.util.stream.Collectors;
-
-import org.springframework.stereotype.Service;
-
-import com.iqser.red.service.redaction.v1.model.Change;
+import com.iqser.red.service.file.management.v1.api.model.FileType;
 import com.iqser.red.service.redaction.v1.model.ChangeType;
+import com.iqser.red.service.redaction.v1.model.RedactionChangeLog;
+import com.iqser.red.service.redaction.v1.model.RedactionChangeLogEntry;
 import com.iqser.red.service.redaction.v1.model.RedactionLog;
-import com.iqser.red.service.redaction.v1.model.RedactionLogChanges;
 import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
 import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
-
 import lombok.RequiredArgsConstructor;
 import lombok.extern.slf4j.Slf4j;
+import org.springframework.stereotype.Service;
+
+import java.util.ArrayList;
+import java.util.List;
+import java.util.stream.Collectors;
 
 @Slf4j
 @Service
@@ -28,80 +22,76 @@ public class RedactionChangeLogService {
 
     private final RedactionStorageService redactionStorageService;
 
+    public RedactionChangeLog createAndStoreChangeLog(String dossierId, String fileId, RedactionLog currentRedactionLog) {
 
-    public RedactionLogChanges computeChanges(String dossierId, String fileId, RedactionLog currentRedactionLog) {
-
-        long start = System.currentTimeMillis();
-
-        RedactionLog previousRedactionLog = redactionStorageService.getRedactionLog(dossierId, fileId);
-
-        if (previousRedactionLog == null) {
-            currentRedactionLog.getRedactionLogEntry().forEach(entry -> {
-                entry.getChanges().add(new Change(ChangeType.ADDED, OffsetDateTime.now()));
-            });
-            return new RedactionLogChanges(currentRedactionLog, false);
+        try {
+            RedactionLog previousRedactionLog = redactionStorageService.getRedactionLog(dossierId, fileId);
+            var changeLog = createChangeLog(currentRedactionLog, previousRedactionLog);
+            redactionStorageService.storeObject(dossierId, fileId, FileType.REDACTION_CHANGELOG, changeLog);
+            return changeLog;
+        } catch (Exception e) {
+            log.debug("Previous redaction log not available");
+            return null;
         }
 
-        List<RedactionLogEntry> notRemovedPreviousEntries = previousRedactionLog.getRedactionLogEntry()
-                .stream()
-                .filter(entry -> !entry.getChanges()
-                        .get(entry.getChanges().size() - 1)
-                        .getType()
-                        .equals(ChangeType.REMOVED))
-                .collect(Collectors.toList());
+    }
 
-        Set<RedactionLogEntry> added = new HashSet<>(currentRedactionLog.getRedactionLogEntry());
-        added.removeAll(notRemovedPreviousEntries);
 
-        Set<RedactionLogEntry> removed = new HashSet<>(notRemovedPreviousEntries);
+    private RedactionChangeLog createChangeLog(RedactionLog currentRedactionLog, RedactionLog previousRedactionLog) {
+
+
+        if (previousRedactionLog == null) {
+            return null;
+        }
+
+        List<RedactionLogEntry> added = new ArrayList<>(currentRedactionLog.getRedactionLogEntry());
+        added.removeAll(previousRedactionLog.getRedactionLogEntry());
+
+        List<RedactionLogEntry> removed = new ArrayList<>(previousRedactionLog.getRedactionLogEntry());
         removed.removeAll(currentRedactionLog.getRedactionLogEntry());
 
-        Map<String, RedactionLogEntry> addedIds = new HashMap<>();
-        added.forEach(entry -> {
-            addedIds.put(entry.getId(), entry);
-        });
+        List<RedactionChangeLogEntry> changeLogEntries = added.stream()
+                .map(entry -> convert(entry, ChangeType.ADDED))
+                .collect(Collectors.toList());
+        changeLogEntries.addAll(removed.stream()
+                .map(entry -> convert(entry, ChangeType.REMOVED))
+                .collect(Collectors.toList()));
 
-        Set<String> removedIds = new HashSet<>();
-        removed.forEach(entry -> {
-            removedIds.add(entry.getId());
-        });
+        return new RedactionChangeLog(changeLogEntries,
+                currentRedactionLog.getDictionaryVersion(),
+                currentRedactionLog.getDossierDictionaryVersion(),
+                currentRedactionLog.getRulesVersion(),
+                currentRedactionLog.getLegalBasisVersion());
+    }
 
-        List<RedactionLogEntry> newRedactionLogEntries = previousRedactionLog.getRedactionLogEntry();
 
-        List<RedactionLogEntry> toRemove = new ArrayList<>();
-        newRedactionLogEntries.forEach(entry -> {
-            if (removedIds.contains(entry.getId()) && addedIds.containsKey(entry.getId())) {
-                List<Change> changes = entry.getChanges();
-                changes.add(new Change(ChangeType.CHANGED, OffsetDateTime.now()));
-                var newEntry = addedIds.get(entry.getId());
-                newEntry.setChanges(changes);
-                addedIds.put(entry.getId(), newEntry);
-                toRemove.add(entry);
-            } else if (removedIds.contains(entry.getId())) {
-                entry.getChanges().add(new Change(ChangeType.REMOVED, OffsetDateTime.now()));
-            } else if (addedIds.containsKey(entry.getId())) {
-                List<Change> changes = entry.getChanges();
-                changes.add(new Change(ChangeType.ADDED, OffsetDateTime.now()));
-                var newEntry = addedIds.get(entry.getId());
-                newEntry.setChanges(changes);
-                addedIds.put(entry.getId(), newEntry);
-                toRemove.add(entry);
-            }
-        });
+    private RedactionChangeLogEntry convert(RedactionLogEntry entry, ChangeType changeType) {
 
-        newRedactionLogEntries.removeAll(toRemove);
-
-        addedIds.forEach((k, v) -> {
-            if(v.getChanges().isEmpty()) {
-                v.getChanges().add(new Change(ChangeType.ADDED, OffsetDateTime.now()));
-            }
-            newRedactionLogEntries.add(v);
-        });
-
-        currentRedactionLog.setRedactionLogEntry(newRedactionLogEntries);
-
-        log.info("Change computation took: {}", System.currentTimeMillis() - start);
-        return new RedactionLogChanges(currentRedactionLog, !addedIds.isEmpty() || !removedIds.isEmpty());
+        return RedactionChangeLogEntry.builder()
+                .id(entry.getId())
+                .type(entry.getType())
+                .value(entry.getValue())
+                .reason(entry.getReason())
+                .matchedRule(entry.getMatchedRule())
+                .legalBasis(entry.getLegalBasis())
+                .redacted(entry.isRedacted())
+                .isHint(entry.isHint())
+                .isRecommendation(entry.isRecommendation())
+                .section(entry.getSection())
+                .color(entry.getColor())
+                .positions(entry.getPositions())
+                .sectionNumber(entry.getSectionNumber())
+                .manual(entry.isManual())
+                .status(entry.getStatus())
+                .manualRedactionType(entry.getManualRedactionType())
+                .isDictionaryEntry(entry.isDictionaryEntry())
+                .textBefore(entry.getTextBefore())
+                .textAfter(entry.getTextAfter())
+                .comments(entry.getComments())
+                .changeType(changeType)
+                .isDossierDictionaryEntry(entry.isDossierDictionaryEntry())
+                .excluded(entry.isExcluded())
+                .build();
     }
 
 }

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/service/RedactionLogCreatorService.java

@@ -1,5 +1,26 @@
 package com.iqser.red.service.redaction.v1.server.redaction.service;
 
+import com.iqser.red.service.redaction.v1.model.CellRectangle;
+import com.iqser.red.service.redaction.v1.model.Point;
+import com.iqser.red.service.redaction.v1.model.Rectangle;
+import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
+import com.iqser.red.service.redaction.v1.model.SectionRectangle;
+import com.iqser.red.service.redaction.v1.server.classification.model.Document;
+import com.iqser.red.service.redaction.v1.server.classification.model.Paragraph;
+import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
+import com.iqser.red.service.redaction.v1.server.parsing.model.RedTextPosition;
+import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
+import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
+import com.iqser.red.service.redaction.v1.server.redaction.model.EntityPositionSequence;
+import com.iqser.red.service.redaction.v1.server.redaction.model.Image;
+import com.iqser.red.service.redaction.v1.server.redaction.utils.IdBuilder;
+import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
+import com.iqser.red.service.redaction.v1.server.tableextraction.model.Cell;
+import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
+import lombok.RequiredArgsConstructor;
+import org.apache.commons.collections4.CollectionUtils;
+import org.springframework.stereotype.Service;
+
 import java.util.ArrayList;
 import java.util.HashSet;
 import java.util.List;
@@ -7,22 +28,6 @@ import java.util.Map;
 import java.util.Set;
 import java.util.stream.Collectors;
 
-import org.apache.commons.collections4.CollectionUtils;
-import org.springframework.stereotype.Service;
-
-import com.iqser.red.service.redaction.v1.model.Point;
-import com.iqser.red.service.redaction.v1.model.Rectangle;
-import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
-import com.iqser.red.service.redaction.v1.server.parsing.model.RedTextPosition;
-import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
-import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
-import com.iqser.red.service.redaction.v1.server.redaction.model.EntityPositionSequence;
-import com.iqser.red.service.redaction.v1.server.redaction.model.Image;
-import com.iqser.red.service.redaction.v1.server.redaction.model.PageEntities;
-import com.iqser.red.service.redaction.v1.server.redaction.utils.IdBuilder;
-
-import lombok.RequiredArgsConstructor;
-
 @Service
 @RequiredArgsConstructor
 public class RedactionLogCreatorService {
@@ -30,27 +35,26 @@ public class RedactionLogCreatorService {
     private final DictionaryService dictionaryService;
 
 
-    public List<RedactionLogEntry> createRedactionLog(PageEntities pageEntities, int numberOfPages,
-                                                      String dossierTemplateId) {
-
-        List<RedactionLogEntry> entries = new ArrayList<>();
+    public void createRedactionLog(Document classifiedDoc, int numberOfPages, String dossierTemplateId) {
 
         for (int page = 1; page <= numberOfPages; page++) {
-            if (pageEntities.getEntitiesPerPage().get(page) != null) {
-                entries.addAll(addEntries(pageEntities.getEntitiesPerPage(), page, dossierTemplateId));
+
+            addSectionGrid(classifiedDoc, page);
+
+            if (classifiedDoc.getEntities().get(page) != null) {
+                classifiedDoc.getRedactionLogEntities()
+                        .addAll(addEntries(classifiedDoc.getEntities(), page, dossierTemplateId));
             }
 
-            if (pageEntities.getImagesPerPage().get(page) != null) {
-                entries.addAll(addImageEntries(pageEntities.getImagesPerPage(), page, dossierTemplateId));
+            if (classifiedDoc.getImages().get(page) != null && !classifiedDoc.getImages().get(page).isEmpty()) {
+                classifiedDoc.getRedactionLogEntities()
+                        .addAll(addImageEntries(classifiedDoc.getImages(), page, dossierTemplateId));
             }
         }
-
-        return entries;
     }
 
 
-    public List<RedactionLogEntry> addImageEntries(Map<Integer, Set<Image>> images, int pageNumber,
-                                                   String dossierTemplateId) {
+    public List<RedactionLogEntry> addImageEntries(Map<Integer, Set<Image>> images, int pageNumber, String dossierTemplateId) {
 
         List<RedactionLogEntry> redactionLogEntities = new ArrayList<>();
 
@@ -75,10 +79,13 @@ public class RedactionLogCreatorService {
                             .getX(), (float) image.getPosition().getY()), (float) image.getPosition()
                             .getWidth(), (float) image.getPosition().getHeight(), pageNumber)))
                     .sectionNumber(image.getSectionNumber())
-                    .section(image.getSection())
+                    //.section(image.getSection())
+                    // RED-2622
+                    .section("Image:"+image.getType())
                     .imageHasTransparency(image.isHasTransparency())
                     .build();
 
+
             redactionLogEntities.add(redactionLogEntry);
         }
 
@@ -96,6 +103,7 @@ public class RedactionLogCreatorService {
         entityLoop:
         for (Entity entity : entities.get(page)) {
 
+
             for (EntityPositionSequence entityPositionSequence : entity.getPositionSequences()) {
 
                 RedactionLogEntry redactionLogEntry = createRedactionLogEntry(entity, dossierTemplateId);
@@ -115,10 +123,12 @@ public class RedactionLogCreatorService {
                             .flatMap(seq -> seq.getTextPositions().stream())
                             .collect(Collectors.toList()), page);
 
+
                     redactionLogEntry.getPositions().addAll(rectanglesPerLine);
 
                 }
 
+
                 // FIXME ids should never be null. Figure out why this happens.
                 if (redactionLogEntry.getId() != null) {
                     redactionLogEntities.add(redactionLogEntry);
@@ -140,7 +150,7 @@ public class RedactionLogCreatorService {
             int startIndex = 0;
             for (int i = 1; i < textPositions.size(); i++) {
                 float yDirAdj = textPositions.get(i).getYDirAdj();
-                if (yDirAdj != y) {
+                if (round(yDirAdj,3) != round(y, 3)) {
                     rectangles.add(TextPositionSequence.fromData(textPositions.subList(startIndex, i), page)
                             .getRectangle());
                     y = yDirAdj;
@@ -156,12 +166,14 @@ public class RedactionLogCreatorService {
         return rectangles;
     }
 
+    private double round(float value, int decimalPoints) {
+        var d = Math.pow(10, decimalPoints);
+        return Math.round(value * d) / d;
+    }
+
 
     private RedactionLogEntry createRedactionLogEntry(Entity entity, String dossierTemplateId) {
 
-        Set<String> referenceIds = new HashSet<>();
-        entity.getReferences().forEach(ref -> ref.getPositionSequences().forEach(pos -> referenceIds.add(pos.getId())));
-
         return RedactionLogEntry.builder()
                 .color(getColor(entity.getType(), dossierTemplateId, entity.isRedaction()))
                 .reason(entity.getRedactionReason())
@@ -180,12 +192,54 @@ public class RedactionLogCreatorService {
                 .startOffset(entity.getStart())
                 .endOffset(entity.getEnd())
                 .isDossierDictionaryEntry(entity.isDossierDictionaryEntry())
-                .engines(entity.getEngines())
-                .reference(referenceIds)
                 .build();
     }
 
 
+    private void addSectionGrid(Document classifiedDoc, int page) {
+
+        for (Paragraph paragraph : classifiedDoc.getParagraphs()) {
+
+            for (int i = 0; i <= paragraph.getPageBlocks().size() - 1; i++) {
+
+                AbstractTextContainer textBlock = paragraph.getPageBlocks().get(i);
+
+                if (textBlock.getPage() != page) {
+                    continue;
+                }
+
+                if (textBlock instanceof TextBlock) {
+
+                    classifiedDoc.getSectionGrid()
+                            .getRectanglesPerPage()
+                            .computeIfAbsent(page, (x) -> new ArrayList<>())
+                            .add(new SectionRectangle(new Point(textBlock.getMinX(), textBlock.getMinY()), textBlock.getWidth(), textBlock
+                                    .getHeight(), i + 1, paragraph.getPageBlocks().size()));
+
+                } else if (textBlock instanceof Table) {
+
+                    List<CellRectangle> cellRectangles = new ArrayList<>();
+                    for (List<Cell> row : ((Table) textBlock).getRows()) {
+                        for (Cell cell : row) {
+                            if (cell != null) {
+                                cellRectangles.add(new CellRectangle(new Point((float) cell.getX(), (float) cell.getY()), (float) cell
+                                        .getWidth(), (float) cell.getHeight()));
+                            }
+                        }
+                    }
+
+                    classifiedDoc.getSectionGrid()
+                            .getRectanglesPerPage()
+                            .computeIfAbsent(page, (x) -> new ArrayList<>())
+                            .add(new SectionRectangle(new Point(textBlock.getMinX(), textBlock.getMinY()), textBlock.getWidth(), textBlock
+                                    .getHeight(), i + 1, paragraph.getPageBlocks().size(), cellRectangles));
+
+                }
+            }
+        }
+    }
+
+
     private float[] getColor(String type, String dossierTemplateId, boolean isRedaction) {
 
         if (!isRedaction && !isHint(type, dossierTemplateId)) {
@@ -206,4 +260,5 @@ public class RedactionLogCreatorService {
         return dictionaryService.isRecommendation(type, dossierTemplateId);
     }
 
+
 }

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/service/RedactionLogMergeService.java

@@ -1,31 +1,15 @@
 package com.iqser.red.service.redaction.v1.server.redaction.service;
 
-import java.time.OffsetDateTime;
-import java.util.ArrayList;
-import java.util.Collections;
-import java.util.List;
-import java.util.Map;
-import java.util.Set;
-import java.util.stream.Collectors;
-
-import org.springframework.stereotype.Service;
-
-import com.iqser.red.service.redaction.v1.model.Comment;
-import com.iqser.red.service.redaction.v1.model.IdRemoval;
-import com.iqser.red.service.redaction.v1.model.ManualForceRedact;
-import com.iqser.red.service.redaction.v1.model.ManualImageRecategorization;
-import com.iqser.red.service.redaction.v1.model.ManualLegalBasisChange;
-import com.iqser.red.service.redaction.v1.model.ManualRedactionEntry;
-import com.iqser.red.service.redaction.v1.model.ManualRedactionType;
-import com.iqser.red.service.redaction.v1.model.ManualRedactions;
-import com.iqser.red.service.redaction.v1.model.RedactionLog;
-import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
-import com.iqser.red.service.redaction.v1.model.Status;
-
+import com.iqser.red.service.redaction.v1.model.*;
 import lombok.AllArgsConstructor;
 import lombok.Data;
 import lombok.RequiredArgsConstructor;
 import lombok.extern.slf4j.Slf4j;
+import org.springframework.stereotype.Service;
+
+import java.time.OffsetDateTime;
+import java.util.*;
+import java.util.stream.Collectors;
 
 @Slf4j
 @Service
@@ -33,15 +17,15 @@ import lombok.extern.slf4j.Slf4j;
 public class RedactionLogMergeService {
 
     private final DictionaryService dictionaryService;
+    private final SectionTextService sectionTextService;
 
-
-    public RedactionLog mergeRedactionLogData(RedactionLog redactionLog, String dossierTemplateId,
+    public RedactionLog mergeRedactionLogData(RedactionLog redactionLog, SectionGrid sectionGrid, String dossierTemplateId,
                                               ManualRedactions manualRedactions, Set<Integer> excludedPages) {
 
         log.info("Merging Redaction log with manual redactions {}", manualRedactions);
         if (manualRedactions != null) {
 
-            var manualRedactionLogEntries = addManualAddEntries(manualRedactions.getEntriesToAdd(), manualRedactions.getComments(), dossierTemplateId);
+            var manualRedactionLogEntries = addManualAddEntries(sectionGrid, manualRedactions.getEntriesToAdd(), manualRedactions.getComments(), dossierTemplateId);
 
             redactionLog.getRedactionLogEntry().addAll(manualRedactionLogEntries);
 
@@ -66,6 +50,14 @@ public class RedactionLogMergeService {
 
         }
 
+        Set<String> processedIds = new HashSet<>();
+        redactionLog.getRedactionLogEntry().removeIf(entry -> {
+            if(processedIds.contains(entry.getId())){
+                return true;
+            }
+            processedIds.add(entry.getId());
+            return false;
+        });
         return redactionLog;
     }
 
@@ -115,6 +107,8 @@ public class RedactionLogMergeService {
                 if (imageRecategorization.getStatus().equals(Status.APPROVED)) {
                     redactionLogEntry.setStatus(Status.APPROVED);
                     redactionLogEntry.setType(imageRecategorization.getType());
+                    // RED-2622
+                    redactionLogEntry.setSection("Image:" + redactionLogEntry.getType());
                     manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", recategorized by manual override");
                 } else if (imageRecategorization.getStatus().equals(Status.REQUESTED)) {
                     manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", requested to recategorize");
@@ -190,8 +184,12 @@ public class RedactionLogMergeService {
                 String manualOverrideReason = null;
                 if (manualLegalBasisChange.getStatus().equals(Status.APPROVED)) {
                     redactionLogEntry.setStatus(Status.APPROVED);
+                    redactionLogEntry.setRedacted(true);
                     manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", legal basis was manually changed");
                     redactionLogEntry.setLegalBasis(manualLegalBasisChange.getLegalBasis());
+                    if (manualLegalBasisChange.getSection() != null) {
+                        redactionLogEntry.setSection(manualLegalBasisChange.getSection());
+                    }
                 } else if (manualLegalBasisChange.getStatus().equals(Status.REQUESTED)) {
                     manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", legal basis change requested");
                     redactionLogEntry.setStatus(Status.REQUESTED);
@@ -202,6 +200,7 @@ public class RedactionLogMergeService {
                     redactionLogEntry.setStatus(Status.DECLINED);
                 }
 
+
                 redactionLogEntry.setManualRedactionUserId(manualLegalBasisChange.getUser());
                 redactionLogEntry.setReason(manualOverrideReason);
                 redactionLogEntry.setManual(true);
@@ -226,7 +225,8 @@ public class RedactionLogMergeService {
     }
 
 
-    public List<RedactionLogEntry> addManualAddEntries(Set<ManualRedactionEntry> manualAdds,
+    private List<RedactionLogEntry> addManualAddEntries(SectionGrid sectionGrid,
+                                                       Set<ManualRedactionEntry> manualAdds,
                                                        Map<String, List<Comment>> comments, String dossierTemplateId) {
 
         List<RedactionLogEntry> redactionLogEntries = new ArrayList<>();
@@ -234,11 +234,15 @@ public class RedactionLogMergeService {
         for (ManualRedactionEntry manualRedactionEntry : manualAdds) {
 
             if (!approvedAndShouldBeInDictionary(manualRedactionEntry)) {
+
                 RedactionLogEntry redactionLogEntry = createRedactionLogEntry(manualRedactionEntry, manualRedactionEntry
                         .getId(), dossierTemplateId);
-                redactionLogEntry.setPositions(manualRedactionEntry.getPositions());
                 redactionLogEntry.setComments(comments.get(manualRedactionEntry.getId()));
+
+                sectionTextService.handleSectionText(sectionGrid, redactionLogEntry);
+
                 redactionLogEntries.add(redactionLogEntry);
+
             }
         }
 
@@ -264,14 +268,15 @@ public class RedactionLogMergeService {
                 .isDossierDictionaryEntry(manualRedactionEntry.isAddToDossierDictionary())
                 .legalBasis(manualRedactionEntry.getLegalBasis())
                 .value(manualRedactionEntry.getValue())
+                .section(manualRedactionEntry.getSection())
                 .type(manualRedactionEntry.getType())
                 .redacted(true)
                 .isHint(false)
-                .section(null)
                 .sectionNumber(-1)
                 .manual(true)
                 .status(manualRedactionEntry.getStatus())
                 .manualRedactionType(ManualRedactionType.ADD)
+                .positions(manualRedactionEntry.getPositions())
                 .manualRedactionUserId(manualRedactionEntry.getUser())
                 .build();
     }

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/service/SectionGridCreatorService.java

@@ -1,76 +0,0 @@
-package com.iqser.red.service.redaction.v1.server.redaction.service;
-
-import java.util.ArrayList;
-import java.util.List;
-
-import org.springframework.stereotype.Service;
-
-import com.iqser.red.service.redaction.v1.model.CellRectangle;
-import com.iqser.red.service.redaction.v1.model.Point;
-import com.iqser.red.service.redaction.v1.model.SectionRectangle;
-import com.iqser.red.service.redaction.v1.server.classification.model.Document;
-import com.iqser.red.service.redaction.v1.server.classification.model.Paragraph;
-import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
-import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
-import com.iqser.red.service.redaction.v1.server.tableextraction.model.Cell;
-import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
-
-import lombok.RequiredArgsConstructor;
-
-@Service
-@RequiredArgsConstructor
-public class SectionGridCreatorService {
-
-
-    public void createSectionGrid(Document classifiedDoc, int numberOfPages) {
-
-        for (int page = 1; page <= numberOfPages; page++) {
-            addSectionGrid(classifiedDoc, page);
-        }
-    }
-
-
-    private void addSectionGrid(Document classifiedDoc, int page) {
-
-        for (Paragraph paragraph : classifiedDoc.getParagraphs()) {
-
-            for (int i = 0; i <= paragraph.getPageBlocks().size() - 1; i++) {
-
-                AbstractTextContainer textBlock = paragraph.getPageBlocks().get(i);
-
-                if (textBlock.getPage() != page) {
-                    continue;
-                }
-
-                if (textBlock instanceof TextBlock) {
-
-                    classifiedDoc.getSectionGrid()
-                            .getRectanglesPerPage()
-                            .computeIfAbsent(page, (x) -> new ArrayList<>())
-                            .add(new SectionRectangle(new Point(textBlock.getMinX(), textBlock.getMinY()), textBlock.getWidth(), textBlock
-                                    .getHeight(), i + 1, paragraph.getPageBlocks().size()));
-
-                } else if (textBlock instanceof Table) {
-
-                    List<CellRectangle> cellRectangles = new ArrayList<>();
-                    for (List<Cell> row : ((Table) textBlock).getRows()) {
-                        for (Cell cell : row) {
-                            if (cell != null) {
-                                cellRectangles.add(new CellRectangle(new Point((float) cell.getX(), (float) cell.getY()), (float) cell
-                                        .getWidth(), (float) cell.getHeight()));
-                            }
-                        }
-                    }
-
-                    classifiedDoc.getSectionGrid()
-                            .getRectanglesPerPage()
-                            .computeIfAbsent(page, (x) -> new ArrayList<>())
-                            .add(new SectionRectangle(new Point(textBlock.getMinX(), textBlock.getMinY()), textBlock.getWidth(), textBlock
-                                    .getHeight(), i + 1, paragraph.getPageBlocks().size(), cellRectangles));
-
-                }
-            }
-        }
-    }
-
-}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/service/SectionTextBuilderService.java

@@ -1,220 +0,0 @@
-package com.iqser.red.service.redaction.v1.server.redaction.service;
-
-import java.util.ArrayList;
-import java.util.HashMap;
-import java.util.List;
-import java.util.Locale;
-import java.util.Map;
-import java.util.concurrent.atomic.AtomicInteger;
-import java.util.stream.Collectors;
-
-import org.apache.commons.collections4.CollectionUtils;
-import org.springframework.stereotype.Service;
-
-import com.iqser.red.service.redaction.v1.model.Point;
-import com.iqser.red.service.redaction.v1.model.SectionArea;
-import com.iqser.red.service.redaction.v1.server.classification.model.Document;
-import com.iqser.red.service.redaction.v1.server.classification.model.Footer;
-import com.iqser.red.service.redaction.v1.server.classification.model.Header;
-import com.iqser.red.service.redaction.v1.server.classification.model.Paragraph;
-import com.iqser.red.service.redaction.v1.server.classification.model.SectionText;
-import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
-import com.iqser.red.service.redaction.v1.server.classification.model.UnclassifiedText;
-import com.iqser.red.service.redaction.v1.server.redaction.model.CellValue;
-import com.iqser.red.service.redaction.v1.server.redaction.model.Image;
-import com.iqser.red.service.redaction.v1.server.redaction.model.ImageType;
-import com.iqser.red.service.redaction.v1.server.redaction.model.PdfImage;
-import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
-import com.iqser.red.service.redaction.v1.server.tableextraction.model.Cell;
-import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
-
-import lombok.RequiredArgsConstructor;
-import lombok.extern.slf4j.Slf4j;
-
-@Slf4j
-@Service
-@RequiredArgsConstructor
-public class SectionTextBuilderService {
-
-    public List<SectionText> buildSectionText(Document classifiedDoc) {
-
-        List<SectionText> sectionTexts = new ArrayList<>();
-        AtomicInteger sectionNumber = new AtomicInteger(1);
-        for (Paragraph paragraph : classifiedDoc.getParagraphs()) {
-
-            List<Table> tables = paragraph.getTables();
-            for (Table table : tables) {
-                if (table.getColCount() == 2) {
-                    sectionTexts.add(processTableAsOneText(table, sectionNumber));
-                } else {
-                    sectionTexts.addAll(processTablePerRow(table, sectionNumber));
-                }
-                sectionNumber.incrementAndGet();
-            }
-            sectionTexts.add(processText(paragraph.getSearchableText(), paragraph.getTextBlocks(), paragraph.getHeadline(), sectionNumber, paragraph
-                    .getImages()));
-            sectionNumber.incrementAndGet();
-        }
-
-        for (Header header : classifiedDoc.getHeaders()) {
-            sectionTexts.add(processText(header.getSearchableText(), header.getTextBlocks(), "Header", sectionNumber, new ArrayList<>()));
-            sectionNumber.incrementAndGet();
-        }
-
-        for (Footer footer : classifiedDoc.getFooters()) {
-            sectionTexts.add(processText(footer.getSearchableText(), footer.getTextBlocks(), "Footer", sectionNumber, new ArrayList<>()));
-            sectionNumber.incrementAndGet();
-        }
-
-        for (UnclassifiedText unclassifiedText : classifiedDoc.getUnclassifiedTexts()) {
-            sectionTexts.add(processText(unclassifiedText.getSearchableText(), unclassifiedText.getTextBlocks(), "", sectionNumber, new ArrayList<>()));
-            sectionNumber.incrementAndGet();
-        }
-
-        return sectionTexts;
-    }
-
-
-    private List<SectionText> processTablePerRow(Table table, AtomicInteger sectionNumber) {
-
-        List<SectionText> sectionTexts = new ArrayList<>();
-        for (List<Cell> row : table.getRows()) {
-            SearchableText searchableRow = new SearchableText();
-            Map<String, CellValue> tabularData = new HashMap<>();
-            int start = 0;
-            List<Integer> cellStarts = new ArrayList<>();
-            SectionText sectionText = new SectionText();
-            for (Cell cell : row) {
-
-                if (CollectionUtils.isEmpty(cell.getTextBlocks())) {
-                    continue;
-                }
-
-                SectionArea sectionArea = new SectionArea(new Point((float) cell.getX(), (float) cell.getY()), (float) cell
-                        .getWidth(), (float) cell.getHeight(), cell.getTextBlocks()
-                        .get(0)
-                        .getSequences()
-                        .get(0)
-                        .getPage());
-                sectionText.getSectionAreas().add(sectionArea);
-                sectionText.getTextBlocks().addAll(cell.getTextBlocks());
-
-                int cellStart = start;
-
-                if (!cell.isHeaderCell()) {
-                    cell.getHeaderCells().forEach(headerCell -> {
-                        StringBuilder headerBuilder = new StringBuilder();
-                        headerCell.getTextBlocks().forEach(textBlock -> headerBuilder.append(textBlock.getText()));
-                        String headerName = headerBuilder.toString()
-                                .replaceAll("\n", "")
-                                .replaceAll(" ", "")
-                                .replaceAll("-", "");
-                        sectionArea.setHeader(headerName);
-                        tabularData.put(headerName, new CellValue(cell.getTextBlocks(), cellStart));
-                    });
-                }
-
-                for (TextBlock textBlock : cell.getTextBlocks()) {
-                    // TODO avoid cell overlap merging.
-                    searchableRow.addAll(textBlock.getSequences());
-                }
-                cellStarts.add(cellStart);
-                start = start + cell.toString().trim().length() + 1;
-
-            }
-
-            sectionText.setText(searchableRow.toString());
-            sectionText.setHeadline(table.getHeadline());
-            sectionText.setSectionNumber(sectionNumber.intValue());
-            sectionText.setTable(true);
-            sectionText.setTabularData(tabularData);
-            sectionText.setCellStarts(cellStarts);
-            sectionTexts.add(sectionText);
-
-            sectionNumber.incrementAndGet();
-        }
-
-        return sectionTexts;
-    }
-
-
-    private SectionText processTableAsOneText(Table table, AtomicInteger sectionNumber) {
-
-        SearchableText entireTableText = new SearchableText();
-        SectionText sectionText = new SectionText();
-        int start = 0;
-        List<Integer> cellStarts = new ArrayList<>();
-        for (List<Cell> row : table.getRows()) {
-
-
-            for (Cell cell : row) {
-                if (CollectionUtils.isEmpty(cell.getTextBlocks())) {
-                    continue;
-                }
-
-                SectionArea sectionArea = new SectionArea(new Point((float) cell.getX(), (float) cell.getY()), (float) cell
-                        .getWidth(), (float) cell.getHeight(), cell.getTextBlocks()
-                        .get(0)
-                        .getSequences()
-                        .get(0)
-                        .getPage());
-                sectionText.getTextBlocks().addAll(cell.getTextBlocks());
-                sectionText.getSectionAreas().add(sectionArea);
-
-                for (TextBlock textBlock : cell.getTextBlocks()) {
-                    entireTableText.addAll(textBlock.getSequences());
-                }
-
-
-                cellStarts.add(start);
-                start = start + cell.toString().trim().length() + 1;
-            }
-
-        }
-        sectionText.setCellStarts(cellStarts);
-
-        sectionText.setText(entireTableText.toString());
-        sectionText.setHeadline(table.getHeadline());
-        sectionText.setSectionNumber(sectionNumber.intValue());
-        sectionText.setTable(true);
-        return sectionText;
-    }
-
-
-    private SectionText processText(SearchableText searchableText, List<TextBlock> paragraphTextBlocks, String headline,
-                                    AtomicInteger sectionNumber, List<PdfImage> images) {
-
-        SectionText sectionText = new SectionText();
-        for (TextBlock paragraphTextBlock : paragraphTextBlocks) {
-            SectionArea sectionArea = new SectionArea(new Point(paragraphTextBlock.getMinX(), paragraphTextBlock.getMinY()), paragraphTextBlock
-                    .getWidth(), paragraphTextBlock.getHeight(), paragraphTextBlock.getPage());
-            sectionText.getSectionAreas().add(sectionArea);
-        }
-
-        sectionText.setText(searchableText.toString());
-        sectionText.setHeadline(headline);
-        sectionText.setSectionNumber(sectionNumber.intValue());
-        sectionText.setTable(false);
-        sectionText.setImages(images.stream()
-                .map(image -> convertImage(image, sectionNumber.intValue(), headline))
-                .collect(Collectors.toSet()));
-        sectionText.setTextBlocks(paragraphTextBlocks);
-        return sectionText;
-    }
-
-
-    private Image convertImage(PdfImage pdfImage, int sectionNumber, String headline) {
-
-        return Image.builder()
-                .type(pdfImage.getImageType().equals(ImageType.OTHER) ? "image" : pdfImage.getImageType()
-                        .name()
-                        .toLowerCase(Locale.ROOT))
-                .position(pdfImage.getPosition())
-                .sectionNumber(sectionNumber)
-                .section(headline)
-                .page(pdfImage.getPage())
-                .hasTransparency(pdfImage.isHasTransparency())
-                .build();
-    }
-
-}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/service/SectionTextService.java

@@ -0,0 +1,42 @@
+package com.iqser.red.service.redaction.v1.server.redaction.service;
+
+import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
+import com.iqser.red.service.redaction.v1.model.SectionGrid;
+import lombok.extern.slf4j.Slf4j;
+import org.springframework.stereotype.Service;
+
+@Slf4j
+@Service
+public class SectionTextService {
+
+
+    public void handleSectionText(SectionGrid sectionGrid, RedactionLogEntry redactionLogEntry) {
+
+        log.info("Handling manual redaction match for sections: {} and entry section: {}, positions: {}",
+                sectionGrid != null ? sectionGrid.getSections().size() : "null", redactionLogEntry.getSection(), redactionLogEntry.getPositions());
+
+        if (redactionLogEntry.getSection() != null) {
+            // set by UI
+            return;
+        }
+
+        if (sectionGrid != null) {
+            var firstPosition = !redactionLogEntry.getPositions().isEmpty() ? redactionLogEntry.getPositions().iterator().next() : null;
+
+            if (firstPosition != null) {
+
+                for (var section : sectionGrid.getSections()) {
+                    if (section.getPages().contains(firstPosition.getPage())) {
+                        for (var sectionArea : section.getSectionAreas()) {
+                            if (sectionArea.contains(firstPosition)) {
+                                redactionLogEntry.setSection(section.getHeadline());
+                                redactionLogEntry.setSectionNumber(section.getSectionNumber());
+                                return;
+                            }
+                        }
+                    }
+                }
+            }
+        }
+    }
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/utils/EntitySearchUtils.java

@@ -1,6 +1,5 @@
 package com.iqser.red.service.redaction.v1.server.redaction.utils;
 
-import com.iqser.red.service.redaction.v1.model.Engine;
 import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
 import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryIncrementValue;
 import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
@@ -48,7 +47,7 @@ public class EntitySearchUtils {
 
 
     public Set<Entity> find(String inputString, Set<String> values, String type, String headline, int sectionNumber,
-                            boolean isDictionaryEntry, boolean isDossierDictionary, Engine engine) {
+                            boolean local, boolean isDossierDictionary) {
 
         Set<Entity> found = new HashSet<>();
 
@@ -68,7 +67,7 @@ public class EntitySearchUtils {
 
                 if (startIndex > -1 && (startIndex == 0 || Character.isWhitespace(inputString.charAt(startIndex - 1)) || isSeparator(inputString
                         .charAt(startIndex - 1))) && (stopIndex == inputString.length() || isSeparator(inputString.charAt(stopIndex)))) {
-                    found.add(new Entity(inputString.substring(startIndex, stopIndex), type, startIndex, stopIndex, headline, sectionNumber, isDictionaryEntry, isDossierDictionary, engine));
+                    found.add(new Entity(inputString.substring(startIndex, stopIndex), type, startIndex, stopIndex, headline, sectionNumber, !local, isDossierDictionary));
                 }
             } while (startIndex > -1);
         }
@@ -143,13 +142,9 @@ public class EntitySearchUtils {
             Entity existing = entities.stream().filter(entity -> entity.equals(found)).findFirst().get();
             if (dictionary.getDictionaryRank(existing.getType()) <= dictionary.getDictionaryRank(found.getType())) {
                 entities.remove(found);
-                entities.add(found);
-            } else {
-                existing.getEngines().addAll(found.getEngines());
             }
-        } else {
-            entities.add(found);
         }
+        entities.add(found);
     }
 
 
@@ -159,17 +154,4 @@ public class EntitySearchUtils {
         entities.addAll(found);
     }
 
-
-    public void addOrAddEngine(Set<Entity> existing, Set<Entity> toBeAdded){
-
-        for(Entity toAdd: toBeAdded){
-            if (existing.contains(toAdd)) {
-                Entity existingEntity = existing.stream().filter(entity -> entity.equals(toAdd)).findFirst().get();
-                existingEntity.getEngines().addAll(toAdd.getEngines());
-            } else {
-                existing.add(toAdd);
-            }
-        }
-    }
-
 }

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/settings/RedactionServiceSettings.java

@@ -17,6 +17,4 @@ public class RedactionServiceSettings {
 
     private int analysisVersion = 1;
 
-    private boolean enableEntityRecognition = true;
-
 }

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/storage/RedactionStorageService.java

@@ -5,7 +5,6 @@ import com.iqser.red.service.file.management.v1.api.model.FileType;
 import com.iqser.red.service.redaction.v1.model.RedactionLog;
 import com.iqser.red.service.redaction.v1.model.SectionGrid;
 import com.iqser.red.service.redaction.v1.server.classification.model.Text;
-import com.iqser.red.service.redaction.v1.server.client.model.NerEntities;
 import com.iqser.red.storage.commons.exception.StorageObjectDoesNotExist;
 import com.iqser.red.storage.commons.service.StorageService;
 import lombok.Getter;
@@ -74,25 +73,6 @@ public class RedactionStorageService {
     }
 
 
-    public NerEntities getNerEntities(String dossierId, String fileId) {
-
-        InputStreamResource inputStreamResource;
-        try {
-            inputStreamResource = storageService.getObject(StorageIdUtils.getStorageId(dossierId, fileId, FileType.NER_ENTITIES));
-        } catch (StorageObjectDoesNotExist e) {
-            log.debug("NER Entities not available.");
-            return null;
-        }
-
-        try {
-            return objectMapper.readValue(inputStreamResource.getInputStream(), NerEntities.class);
-        } catch (IOException e) {
-            throw new RuntimeException("Could not convert NerEntities", e);
-        }
-    }
-
-
-
     public SectionGrid getSectionGrid(String dossierId, String fileId) {
 
         var sectionGrid = storageService.getObject(StorageIdUtils.getStorageId(dossierId, fileId, FileType.SECTION_GRID));
@@ -103,7 +83,6 @@ public class RedactionStorageService {
         }
     }
 
-
     @RequiredArgsConstructor
     public enum StorageType {
         PARSED_DOCUMENT(".json");

redaction-service-v1/redaction-service-server-v1/src/main/resources/application.yml

@@ -4,7 +4,6 @@ info:
 configuration-service.url: "http://configuration-service-v1:8080"
 file-management-service.url: "http://file-management-service-v1:8080"
 image-service.url: "http://image-service-v1:8080"
-entity-recognition-service.url: "http://entity-recognition-service-v1:8080"
 
 server:
   port: 8080

redaction-service-v1/redaction-service-server-v1/src/test/java/com/iqser/red/service/redaction/v1/server/RedactionIntegrationTest.java

@@ -13,7 +13,7 @@ import com.iqser.red.service.redaction.v1.server.client.LegalBasisClient;
 import com.iqser.red.service.redaction.v1.server.client.RulesClient;
 import com.iqser.red.service.redaction.v1.server.controller.RedactionController;
 import com.iqser.red.service.redaction.v1.server.memory.MemoryStats;
-import com.iqser.red.service.redaction.v1.server.redaction.service.AnalyzeService;
+import com.iqser.red.service.redaction.v1.server.redaction.service.ReanalyzeService;
 import com.iqser.red.service.redaction.v1.server.redaction.utils.ResourceLoader;
 import com.iqser.red.service.redaction.v1.server.redaction.utils.TextNormalizationUtilities;
 import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
@@ -90,7 +90,7 @@ public class RedactionIntegrationTest {
     private RedactionController redactionController;
 
     @Autowired
-    private AnalyzeService analyzeService;
+    private ReanalyzeService reanalyzeService;
 
     @Autowired
     private ObjectMapper objectMapper;
@@ -176,7 +176,6 @@ public class RedactionIntegrationTest {
 
     @Before
     public void stubClients() {
-        //Testkommentar
 
         when(rulesClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(0L);
         when(rulesClient.getRules(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(new RulesResponse(RULES));
@@ -525,8 +524,7 @@ public class RedactionIntegrationTest {
 
         AnalyzeRequest request = prepareStorage("files/Minimal Examples/270Rotated.pdf");
         MemoryStats.printMemoryStats();
-        analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
-        AnalyzeResult result = analyzeService.analyze(request);
+        AnalyzeResult result = reanalyzeService.analyze(request);
         assertThat(result).isNotNull();
     }
 
@@ -537,8 +535,7 @@ public class RedactionIntegrationTest {
 
         AnalyzeRequest request = prepareStorage("scanned/VV-377031.pdf");
         MemoryStats.printMemoryStats();
-        analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
-        AnalyzeResult result = analyzeService.analyze(request);
+        AnalyzeResult result = reanalyzeService.analyze(request);
         assertThat(result).isNotNull();
     }
 
@@ -550,8 +547,7 @@ public class RedactionIntegrationTest {
         ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/merge_images.pdf");
 
         AnalyzeRequest request = prepareStorage(pdfFileResource.getInputStream());
-        analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
-        AnalyzeResult result = analyzeService.analyze(request);
+        AnalyzeResult result = reanalyzeService.analyze(request);
 
         Map<String, List<RedactionLogEntry>> duplicates = new HashMap<>();
 
@@ -577,7 +573,7 @@ public class RedactionIntegrationTest {
             fileOutputStream.write(annotateResponse.getDocument());
         }
         long rstart = System.currentTimeMillis();
-        analyzeService.reanalyze(request);
+        reanalyzeService.reanalyze(request);
 
         long rend = System.currentTimeMillis();
         System.out.println("reanalysis analysis duration: " + (rend - rstart));
@@ -606,11 +602,7 @@ public class RedactionIntegrationTest {
 
             AnalyzeRequest request = prepareStorage(new FileInputStream((path)));
             System.out.println("Redacting file : " + path.getName());
-            analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
-
-            long fstart = System.currentTimeMillis();
-            AnalyzeResult result = analyzeService.analyze(request);
-            System.out.println("analysis analysis duration: " + (System.currentTimeMillis() - fstart));
+            AnalyzeResult result = reanalyzeService.analyze(request);
 
             Map<String, List<RedactionLogEntry>> duplicates = new HashMap<>();
 
@@ -628,7 +620,7 @@ public class RedactionIntegrationTest {
             when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(1L);
 
             long rstart = System.currentTimeMillis();
-            analyzeService.reanalyze(request);
+            reanalyzeService.reanalyze(request);
 
             long rend = System.currentTimeMillis();
             System.out.println("reanalysis analysis duration: " + (rend - rstart));
@@ -664,7 +656,7 @@ public class RedactionIntegrationTest {
     public void redactionTest() throws IOException {
 
         long start = System.currentTimeMillis();
-        ClassPathResource pdfFileResource = new ClassPathResource("files/S11.pdf");
+        ClassPathResource pdfFileResource = new ClassPathResource("files/new/VV-919901.pdf");
         AnalyzeRequest request = prepareStorage(pdfFileResource.getInputStream());
         request.setExcludedPages(Set.of(1));
 
@@ -675,8 +667,7 @@ public class RedactionIntegrationTest {
                 .value("true")
                 .build()));
 
-        analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
-        AnalyzeResult result = analyzeService.analyze(request);
+        AnalyzeResult result = reanalyzeService.analyze(request);
 
         var redactionLog = redactionStorageService.getRedactionLog(TEST_DOSSIER_ID, TEST_FILE_ID);
         var text = redactionStorageService.getText(TEST_DOSSIER_ID, TEST_FILE_ID);
@@ -723,13 +714,10 @@ public class RedactionIntegrationTest {
         reanlysisVersions.put("physical", 2L);
 
         deleted.add("David Chubb");
-        deleted.add("mouse");
 
         dictionary.get(FALSE_POSITIVE).add("David Chubb");
         reanlysisVersions.put("David Chubb", 3L);
 
-        reanlysisVersions.put("mouse", 3L);
-
         when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(3L);
 
         when(dictionaryClient.getDictionaryForType(VERTEBRATE, TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER))
@@ -750,7 +738,7 @@ public class RedactionIntegrationTest {
 
         request.setManualRedactions(manualRedactions);
 
-        AnalyzeResult reanalyzeResult = analyzeService.reanalyze(request);
+        AnalyzeResult reanalyzeResult = reanalyzeService.reanalyze(request);
 
         redactionLog = redactionStorageService.getRedactionLog(TEST_DOSSIER_ID, TEST_FILE_ID);
 
@@ -766,20 +754,6 @@ public class RedactionIntegrationTest {
             fileOutputStream.write(annotateResponse.getDocument());
         }
 
-
-        deleted.remove("mouse");
-        reanlysisVersions.put("mouse", 4L);
-
-        when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(4L);
-
-        when(dictionaryClient.getDictionaryForType(VERTEBRATE, TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER))
-                .thenReturn(getDictionaryResponse(VERTEBRATE, false));
-
-        analyzeService.reanalyze(request);
-
-        redactionLog = redactionStorageService.getRedactionLog(TEST_DOSSIER_ID, TEST_FILE_ID);
-
-        System.out.println("hi");
     }
 
 
@@ -790,8 +764,7 @@ public class RedactionIntegrationTest {
         long start = System.currentTimeMillis();
 
         AnalyzeRequest request = prepareStorage("files/Metolachlor/S-Metolachlor_RAR_02_Volume_2_2018-09-06.pdf");
-        analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
-        AnalyzeResult result = analyzeService.analyze(request);
+        AnalyzeResult result = reanalyzeService.analyze(request);
 
         AnnotateResponse annotateResponse = redactionController.annotate(AnnotateRequest.builder()
                 .dossierId(TEST_DOSSIER_ID)
@@ -852,8 +825,7 @@ public class RedactionIntegrationTest {
 
         AnalyzeRequest request = prepareStorage(pdfFileResource.getInputStream());
         request.setManualRedactions(manualRedactions);
-        analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
-        AnalyzeResult result = analyzeService.analyze(request);
+        AnalyzeResult result = reanalyzeService.analyze(request);
 
         manualRedactions.getEntriesToAdd().add(manualRedactionEntry);
         manualRedactions.setIdsToRemove(Set.of(IdRemoval.builder()
@@ -866,7 +838,7 @@ public class RedactionIntegrationTest {
                 .status(Status.APPROVED)
                 .build()));
 
-        analyzeService.reanalyze(request);
+        reanalyzeService.reanalyze(request);
 
         var redactionLog = redactionStorageService.getRedactionLog(TEST_DOSSIER_ID, TEST_FILE_ID);
 
@@ -889,7 +861,7 @@ public class RedactionIntegrationTest {
     public void classificationTest() throws IOException {
 
         System.out.println("classificationTest");
-        ClassPathResource pdfFileResource = new ClassPathResource("files/S11.pdf");
+        ClassPathResource pdfFileResource = new ClassPathResource("files/new/Single Study - Oral (Gavage) Mouse.pdf");
 
         AnalyzeRequest request = prepareStorage(pdfFileResource.getInputStream());
 
@@ -911,7 +883,7 @@ public class RedactionIntegrationTest {
     public void sectionsTest() throws IOException {
 
         System.out.println("sectionsTest");
-        ClassPathResource pdfFileResource = new ClassPathResource("files/S11.pdf");
+        ClassPathResource pdfFileResource = new ClassPathResource("files/Fludioxonil/51 " + "Fludioxonil_RAR_02_Volume_2_2018-02-21.pdf");
 
         AnalyzeRequest request = prepareStorage(pdfFileResource.getInputStream());
 
@@ -933,7 +905,7 @@ public class RedactionIntegrationTest {
     public void htmlTablesTest() throws IOException {
 
         System.out.println("htmlTablesTest");
-        ClassPathResource pdfFileResource = new ClassPathResource("files/S11.pdf");
+        ClassPathResource pdfFileResource = new ClassPathResource("files/Metolachlor/S-Metolachlor_RAR_02_Volume_2_2018-09-06.pdf");
 
         AnalyzeRequest request = prepareStorage(pdfFileResource.getInputStream());
 
@@ -980,8 +952,7 @@ public class RedactionIntegrationTest {
 
         AnalyzeRequest request = prepareStorage(pdfFileResource.getInputStream());
 
-        analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
-        AnalyzeResult result = analyzeService.analyze(request);
+        AnalyzeResult result = reanalyzeService.analyze(request);
 
         var redactionLog = redactionStorageService.getRedactionLog(TEST_DOSSIER_ID, TEST_FILE_ID);
 
@@ -1029,8 +1000,7 @@ public class RedactionIntegrationTest {
 
         AnalyzeRequest request = prepareStorage(pdfFileResource.getInputStream());
 
-        analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
-        AnalyzeResult result = analyzeService.analyze(request);
+        AnalyzeResult result = reanalyzeService.analyze(request);
 
         AnnotateResponse annotateResponse = redactionController.annotate(AnnotateRequest.builder()
                 .dossierId(TEST_DOSSIER_ID)

redaction-service-v1/redaction-service-server-v1/src/test/java/com/iqser/red/service/redaction/v1/server/redaction/rulebuilder/RuleBuilderModelServiceTest.java

@@ -1,18 +0,0 @@
-package com.iqser.red.service.redaction.v1.server.redaction.rulebuilder;
-
-import com.iqser.red.service.redaction.v1.model.RuleBuilderModel;
-import org.junit.Test;
-
-import static org.assertj.core.api.AssertionsForClassTypes.assertThat;
-
-public class RuleBuilderModelServiceTest {
-
-    @Test
-    public void testRuleBuilderModelProvider() {
-
-        RuleBuilderModel model = new RuleBuilderModelService().getRuleBuilderModel();
-
-        assertThat(model.getWhenClauses().size()).isGreaterThan(1);
-        assertThat(model.getThenConditions().size()).isGreaterThan(1);
-    }
-}

redaction-service-v1/redaction-service-server-v1/src/test/java/com/iqser/red/service/redaction/v1/server/redaction/service/EntityRedactionServiceTest.java

@@ -0,0 +1,511 @@
+package com.iqser.red.service.redaction.v1.server.redaction.service;
+
+import com.amazonaws.services.s3.AmazonS3;
+import com.iqser.red.service.configuration.v1.api.model.*;
+import com.iqser.red.service.configuration.v1.api.resource.DictionaryResource;
+import com.iqser.red.service.redaction.v1.server.Application;
+import com.iqser.red.service.redaction.v1.server.FileSystemBackedStorageService;
+import com.iqser.red.service.redaction.v1.server.classification.model.Document;
+import com.iqser.red.service.redaction.v1.server.client.DictionaryClient;
+import com.iqser.red.service.redaction.v1.server.client.LegalBasisClient;
+import com.iqser.red.service.redaction.v1.server.client.RulesClient;
+import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
+import com.iqser.red.service.redaction.v1.server.redaction.utils.EntitySearchUtils;
+import com.iqser.red.service.redaction.v1.server.redaction.utils.ResourceLoader;
+import com.iqser.red.service.redaction.v1.server.segmentation.PdfSegmentationService;
+import com.iqser.red.storage.commons.service.StorageService;
+import org.junit.Before;
+import org.junit.Ignore;
+import org.junit.Test;
+import org.junit.runner.RunWith;
+import org.kie.api.KieServices;
+import org.kie.api.builder.KieBuilder;
+import org.kie.api.builder.KieFileSystem;
+import org.kie.api.builder.KieModule;
+import org.kie.api.runtime.KieContainer;
+import org.springframework.beans.factory.annotation.Autowired;
+import org.springframework.boot.autoconfigure.EnableAutoConfiguration;
+import org.springframework.boot.autoconfigure.amqp.RabbitAutoConfiguration;
+import org.springframework.boot.test.context.SpringBootTest;
+import org.springframework.boot.test.mock.mockito.MockBean;
+import org.springframework.context.annotation.Bean;
+import org.springframework.context.annotation.Configuration;
+import org.springframework.context.annotation.Import;
+import org.springframework.context.annotation.Primary;
+import org.springframework.core.io.ClassPathResource;
+import org.springframework.test.context.junit4.SpringRunner;
+
+import java.io.BufferedReader;
+import java.io.ByteArrayInputStream;
+import java.io.IOException;
+import java.io.InputStream;
+import java.io.InputStreamReader;
+import java.net.URL;
+import java.nio.charset.StandardCharsets;
+import java.util.*;
+import java.util.concurrent.atomic.AtomicLong;
+
+import static org.assertj.core.api.Assertions.assertThat;
+import static org.mockito.Mockito.when;
+
+@RunWith(SpringRunner.class)
+@SpringBootTest(classes = Application.class, webEnvironment = SpringBootTest.WebEnvironment.RANDOM_PORT)
+@Import(EntityRedactionServiceTest.RedactionIntegrationTestConfiguration.class)
+public class EntityRedactionServiceTest {
+
+    private static final String DEFAULT_RULES = loadFromClassPath("drools/rules.drl");
+    private static final String AUTHOR_CODE = "author";
+    private static final String ADDRESS_CODE = "address";
+    private static final String SPONSOR_CODE = "sponsor";
+
+    private static final AtomicLong DICTIONARY_VERSION = new AtomicLong();
+    private static final AtomicLong RULES_VERSION = new AtomicLong();
+
+    @MockBean
+    private DictionaryClient dictionaryClient;
+
+    @MockBean
+    private RulesClient rulesClient;
+
+    @Autowired
+    private EntityRedactionService entityRedactionService;
+
+    @Autowired
+    private PdfSegmentationService pdfSegmentationService;
+
+    @Autowired
+    private DroolsExecutionService droolsExecutionService;
+
+    @MockBean
+    private AmazonS3 amazonS3;
+
+    @MockBean
+    private LegalBasisClient legalBasisClient;
+
+    private final static String TEST_DOSSIER_TEMPLATE_ID = "123";
+
+    @Configuration
+    @EnableAutoConfiguration(exclude = {RabbitAutoConfiguration.class})
+    public static class RedactionIntegrationTestConfiguration {
+
+        @Bean
+        public KieContainer kieContainer() {
+
+            KieServices kieServices = KieServices.Factory.get();
+
+            KieFileSystem kieFileSystem = kieServices.newKieFileSystem();
+            InputStream input = new ByteArrayInputStream(DEFAULT_RULES.getBytes(StandardCharsets.UTF_8));
+            kieFileSystem.write("src/test/resources/drools/rules.drl", kieServices.getResources()
+                    .newInputStreamResource(input));
+            KieBuilder kieBuilder = kieServices.newKieBuilder(kieFileSystem);
+            kieBuilder.buildAll();
+            KieModule kieModule = kieBuilder.getKieModule();
+
+            return kieServices.newKieContainer(kieModule.getReleaseId());
+        }
+
+
+        @Bean
+        @Primary
+        public StorageService inmemoryStorage() {
+            return new FileSystemBackedStorageService();
+        }
+
+    }
+
+
+    @Test
+    public void testNestedEntitiesRemoval() {
+
+        Set<Entity> entities = new HashSet<>();
+        Entity nested = new Entity("nested", "fake type", 10, 16, "fake headline", 0, false, false);
+        Entity nesting = new Entity("nesting nested", "fake type", 2, 16, "fake headline", 0, false, false);
+        entities.add(nested);
+        entities.add(nesting);
+        EntitySearchUtils.removeEntitiesContainedInLarger(entities);
+
+        assertThat(entities.size()).isEqualTo(1);
+        assertThat(entities).contains(nesting);
+
+    }
+
+
+    @Test
+    public void testTableRedaction() throws IOException {
+
+        ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Single Table.pdf");
+
+        DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
+                .entries(toDictionaryEntry(Arrays.asList("Casey, H.W.", "O’Loughlin,  C.K.", "Salamon, C.M.", "Smith, S.H.")))
+                .build();
+        when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
+        when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(dictionaryResponse);
+        DictionaryResponse addressResponse = DictionaryResponse.builder()
+                .entries(toDictionaryEntry(Collections.singletonList("Toxigenics, Inc., Decatur, IL 62526, USA")))
+                .build();
+        when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(addressResponse);
+
+        DictionaryResponse sponsorResponse = DictionaryResponse.builder()
+                .entries(Collections.emptyList())
+                .build();
+        when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(sponsorResponse);
+
+        Document classifiedDoc = pdfSegmentationService.parseDocument(pdfFileResource.getInputStream());
+        entityRedactionService.processDocument(classifiedDoc, TEST_DOSSIER_TEMPLATE_ID, null, "dossierId", null);
+        assertThat(classifiedDoc.getEntities()).hasSize(1); // one page
+        assertThat(classifiedDoc.getEntities().get(1)).hasSize(7);// 3 author cells, 1 address, 1 Y and 2 N entities
+    }
+
+
+    @Test
+    public void testNestedRedaction() throws IOException {
+
+        ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/nested_redaction.pdf");
+
+        DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
+                .entries(toDictionaryEntry(Arrays.asList("Casey, H.W.", "O’Loughlin,  C.K.", "Salamon, C.M.", "Smith, S.H.")))
+                .build();
+        when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
+        when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(dictionaryResponse);
+        DictionaryResponse addressResponse = DictionaryResponse.builder()
+                .entries(toDictionaryEntry(Collections.singletonList("Toxigenics, Inc., Decatur, IL 62526, USA")))
+                .build();
+        when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(addressResponse);
+        DictionaryResponse sponsorResponse = DictionaryResponse.builder()
+                .entries(Collections.emptyList())
+                .build();
+        when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(sponsorResponse);
+
+        Document classifiedDoc = pdfSegmentationService.parseDocument(pdfFileResource.getInputStream());
+        entityRedactionService.processDocument(classifiedDoc, TEST_DOSSIER_TEMPLATE_ID, null, "dossierId", null);
+        assertThat(classifiedDoc.getEntities()).hasSize(1); // one page
+        assertThat(classifiedDoc.getEntities().get(1)).hasSize(7);// 3 author cells, 1 address, 1 Y and 2 N entities
+    }
+
+
+    @Test
+    public void testTrueNegativesInTable() throws IOException {
+
+        ClassPathResource pdfFileResource = new ClassPathResource("files/Cyprodinil/40 Cyprodinil - EU AIR3 - LCA Section 1" +
+                " Supplement - Identity of the active substance - Reference list.pdf");
+        when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
+        DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
+                .entries(toDictionaryEntry(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_author.txt"))))
+                .build();
+        when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(dictionaryResponse);
+        DictionaryResponse addressResponse = DictionaryResponse.builder()
+                .entries(toDictionaryEntry(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_address.txt"))))
+                .build();
+        when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(addressResponse);
+        DictionaryResponse sponsorResponse = DictionaryResponse.builder()
+                .entries(Collections.emptyList())
+                .build();
+        when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(sponsorResponse);
+        Document classifiedDoc = pdfSegmentationService.parseDocument(pdfFileResource.getInputStream());
+        entityRedactionService.processDocument(classifiedDoc, TEST_DOSSIER_TEMPLATE_ID, null, "dossierId", null);
+        assertThat(classifiedDoc.getEntities()
+                .entrySet()
+                .stream()
+                .noneMatch(entry -> entry.getValue().stream().anyMatch(e -> e.getMatchedRule() == 9))).isTrue();
+        pdfFileResource = new ClassPathResource("files/Compounds/27 A8637C - EU AIR3 - MCP Section 1 - Identity of " +
+                "the plant protection product.pdf");
+        classifiedDoc = pdfSegmentationService.parseDocument(pdfFileResource.getInputStream());
+        entityRedactionService.processDocument(classifiedDoc, TEST_DOSSIER_TEMPLATE_ID, null, "dossierId", null);
+        assertThat(classifiedDoc.getEntities()
+                .entrySet()
+                .stream()
+                .noneMatch(entry -> entry.getValue().stream().anyMatch(e -> e.getMatchedRule() == 9))).isTrue();
+    }
+
+    @Test
+    public void testFalsePositiveInWrongCell() throws IOException {
+
+        ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Row With Ambiguous Redaction.pdf");
+        when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
+        DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
+                .entries(toDictionaryEntry(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_author.txt"))))
+                .build();
+        when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(dictionaryResponse);
+        DictionaryResponse addressResponse = DictionaryResponse.builder()
+                .entries(toDictionaryEntry(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_address.txt"))))
+                .build();
+        when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(addressResponse);
+        DictionaryResponse sponsorResponse = DictionaryResponse.builder()
+                .entries(toDictionaryEntry(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_sponsor.txt"))))
+                .build();
+        when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(sponsorResponse);
+        Document classifiedDoc = pdfSegmentationService.parseDocument(pdfFileResource.getInputStream());
+        entityRedactionService.processDocument(classifiedDoc, TEST_DOSSIER_TEMPLATE_ID, null, "dossierId", null);
+        assertThat(classifiedDoc.getEntities()).hasSize(1); // one page
+        assertThat(classifiedDoc.getEntities().get(1).stream()
+                .filter(entity -> entity.getMatchedRule() == 9)
+                .count()).isEqualTo(10);
+
+    }
+
+
+    @Test
+    public void testApplicantInTableRedaction() throws IOException {
+
+        String tableRules = "package drools\n" +
+                "\n" +
+                "import com.iqser.red.service.redaction.v1.server.redaction.model.Section\n" +
+                "\n" +
+                "global Section section\n" +
+                "rule \"6: Redact contact information if applicant is found\"\n" +
+                "   when\n" +
+                "       eval(section.headlineContainsWord(\"applicant\") || section.getText().contains(\"Applicant\"));\n" +
+                "   then\n" +
+                "       section.redactLineAfter(\"Name:\", \"address\", 6,true, \"Applicant information was found\", \"Reg" +
+                " (EC) No 1107/2009 Art. 63 (2g)\");\n" +
+                "       section.redactBetween(\"Address:\", \"Contact\", \"address\", 6,true, \"Applicant information was found\", \"Reg (EC) No 1107/2009 Art. 63 (2g)\");\n" +
+                "       section.redactLineAfter(\"Contact point:\",  \"address\", 6,true, \"Applicant information was found\", \"Reg (EC) No 1107/2009 Art. 63 (2g)\");\n" +
+                "       section.redactLineAfter(\"Phone:\", \"address\", 6,true, \"Applicant information was found\", " +
+                "\"Reg (EC) No 1107/2009 Art. 63 (2g)\");\n" +
+                "       section.redactLineAfter(\"Fax:\", \"address\", 6,true, \"Applicant information was found\", \"Reg " +
+                "(EC) No 1107/2009 Art. 63 (2g)\");\n" +
+                "       section.redactLineAfter(\"Tel.:\", \"address\", 6,true, \"Applicant information was found\", \"Reg" +
+                " (EC) No 1107/2009 Art. 63 (2g)\");\n" +
+                "       section.redactLineAfter(\"Tel:\", \"address\", 6,true, \"Applicant information was found\", \"Reg " +
+                "(EC) No 1107/2009 Art. 63 (2g)\");\n" +
+                "       section.redactLineAfter(\"E-mail:\", \"address\", 6,true, \"Applicant information was found\", " +
+                "\"Reg (EC) No 1107/2009 Art. 63 (2g)\");\n" +
+                "       section.redactLineAfter(\"Email:\", \"address\", 6,true, \"Applicant information was found\", " +
+                "\"Reg (EC) No 1107/2009 Art. 63 (2g)\");\n" +
+                "       section.redactLineAfter(\"Contact:\", \"address\", 6,true, \"Applicant information was found\", " +
+                "\"Reg (EC) No 1107/2009 Art. 63 (2g)\");\n" +
+                "       section.redactLineAfter(\"Telephone number:\", \"address\", 6,true, \"Applicant information was found\", \"Reg (EC) No 1107/2009 Art. 63 (2g)\");\n" +
+                "       section.redactLineAfter(\"Fax number:\", \"address\", 6,true, \"Applicant information was found\"," +
+                " \"Reg (EC) No 1107/2009 Art. 63 (2g)\");\n" +
+                "       section.redactLineAfter(\"Telephone:\", \"address\", 6,true, \"Applicant information was found\", " +
+                "\"Reg (EC) No 1107/2009 Art. 63 (2g)\");\n" +
+                "       section.redactBetween(\"No:\", \"Fax\", \"address\", 6,true, \"Applicant information was found\", " +
+                "\"Reg (EC) No 1107/2009 Art. 63 (2g)\");\n" +
+                "       section.redactBetween(\"Contact:\", \"Tel.:\", \"address\", 6,true, \"Applicant information was found\", \"Reg (EC) No 1107/2009 Art. 63 (2g)\");\n" +
+                "   end";
+        when(rulesClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(RULES_VERSION.incrementAndGet());
+        when(rulesClient.getRules(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(new RulesResponse(tableRules));
+        droolsExecutionService.updateRules(TEST_DOSSIER_TEMPLATE_ID);
+
+        ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Applicant Producer Table.pdf");
+        when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
+        DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
+                .entries(toDictionaryEntry(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_author.txt"))))
+                .build();
+        when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(dictionaryResponse);
+        DictionaryResponse addressResponse = DictionaryResponse.builder()
+                .entries(toDictionaryEntry(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_address.txt"))))
+                .build();
+        when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(addressResponse);
+        DictionaryResponse sponsorResponse = DictionaryResponse.builder()
+                .entries(Collections.emptyList())
+                .build();
+        when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(sponsorResponse);
+        Document classifiedDoc = pdfSegmentationService.parseDocument(pdfFileResource.getInputStream());
+        entityRedactionService.processDocument(classifiedDoc, TEST_DOSSIER_TEMPLATE_ID, null, "dossierId", null);
+        assertThat(classifiedDoc.getEntities()).hasSize(1); // one page
+        assertThat(classifiedDoc.getEntities().get(1).stream()
+                .filter(entity -> entity.getMatchedRule() == 6)
+                .count()).isEqualTo(13);
+
+    }
+
+
+    @Test
+    public void testSponsorInCell() throws IOException {
+
+        String tableRules = "package drools\n" +
+                "\n" +
+                "import com.iqser.red.service.redaction.v1.server.redaction.model.Section\n" +
+                "\n" +
+                "global Section section\n" + "rule \"11: Redact sponsor company\"\n" + "    when\n" + "        " +
+                "Section(searchText.toLowerCase().contains(\"batches produced at\"))\n" + "    then\n" + "        section" +
+                ".redactIfPrecededBy(\"batches produced at\", \"sponsor\", 11, \"Redacted because it represents a " +
+                "sponsor company\", \"Reg (EC) No 1107/2009 Art. 63 (2g)\");\n" + "    end";
+        when(rulesClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(RULES_VERSION.incrementAndGet());
+        when(rulesClient.getRules(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(new RulesResponse(tableRules));
+        droolsExecutionService.updateRules(TEST_DOSSIER_TEMPLATE_ID);
+
+        ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/batches_new_line.pdf");
+        when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
+        DictionaryResponse addressResponse = DictionaryResponse.builder()
+                .entries(Collections.emptyList())
+                .build();
+        when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(addressResponse);
+        DictionaryResponse authorResponse = DictionaryResponse.builder()
+                .entries(Collections.emptyList())
+                .build();
+        when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(authorResponse);
+        DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
+                .entries(toDictionaryEntry(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_sponsor.txt"))))
+                .build();
+        when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(dictionaryResponse);
+        Document classifiedDoc = pdfSegmentationService.parseDocument(pdfFileResource.getInputStream());
+        entityRedactionService.processDocument(classifiedDoc, TEST_DOSSIER_TEMPLATE_ID, null, "dossierId", null);
+        assertThat(classifiedDoc.getEntities()).hasSize(1); // one page
+        assertThat(classifiedDoc.getEntities().get(1).stream()
+                .filter(entity -> entity.getMatchedRule() == 11)
+                .count()).isEqualTo(1);
+
+    }
+
+
+    @Test
+    public void headerPropagation() throws IOException {
+
+        ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Header Propagation.pdf");
+
+        DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
+                .entries(toDictionaryEntry(Arrays.asList("Bissig R.", "Thanei P.")))
+                .build();
+
+        when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
+        when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(dictionaryResponse);
+        DictionaryResponse addressResponse = DictionaryResponse.builder()
+                .entries(toDictionaryEntry(Collections.singletonList("Novartis Crop Protection AG, Basel, Switzerland")))
+                .build();
+        when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(addressResponse);
+
+        DictionaryResponse sponsorResponse = DictionaryResponse.builder()
+                .entries(Collections.emptyList())
+                .build();
+        when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(sponsorResponse);
+        Document classifiedDoc = pdfSegmentationService.parseDocument(pdfFileResource.getInputStream());
+        entityRedactionService.processDocument(classifiedDoc, TEST_DOSSIER_TEMPLATE_ID, null, "dossierId", null);
+        assertThat(classifiedDoc.getEntities()).hasSize(2); // two pages
+        assertThat(classifiedDoc.getEntities().get(1).stream().filter(entity -> entity.getMatchedRule() == 9).count()).isEqualTo(8);
+        assertThat(classifiedDoc.getEntities().get(2).stream().filter(entity -> entity.getMatchedRule() == 9).count()).isEqualTo(5); // 2 names, 1 address, 2 Y
+
+        pdfFileResource = new ClassPathResource("files/Minimal Examples/Header Propagation2.pdf");
+
+        dictionaryResponse = DictionaryResponse.builder()
+                .entries(toDictionaryEntry(Arrays.asList("Tribolet, R.", "Muir, G.", "Kühne-Thu, H.", "Close, C.")))
+                .build();
+
+        when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
+        when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(dictionaryResponse);
+        addressResponse = DictionaryResponse.builder()
+                .entries(toDictionaryEntry(Collections.singletonList("Novartis Crop Protection AG, Basel, Switzerland")))
+                .build();
+        when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(addressResponse);
+
+        classifiedDoc = pdfSegmentationService.parseDocument(pdfFileResource.getInputStream());
+        entityRedactionService.processDocument(classifiedDoc, TEST_DOSSIER_TEMPLATE_ID, null, "dossierId", null);
+        assertThat(classifiedDoc.getEntities()).hasSize(1); // one page
+        assertThat(classifiedDoc.getEntities().get(1).stream().filter(entity -> entity.getMatchedRule() == 9).count()).isEqualTo(3);
+        assertThat(classifiedDoc.getEntities().get(1).stream().filter(entity -> entity.getMatchedRule() == 8).count()).isEqualTo(9);
+    }
+
+
+    @Test
+    @Ignore
+    public void testNGuideline() throws IOException {
+
+        ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Empty Tabular Data.pdf");
+
+        DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
+                .entries(toDictionaryEntry(Collections.singletonList("Aldershof S.")))
+                .build();
+
+        when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
+        when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(dictionaryResponse);
+        DictionaryResponse addressResponse = DictionaryResponse.builder()
+                .entries(toDictionaryEntry(Collections.singletonList("Novartis Crop Protection AG, Basel, Switzerland")))
+                .build();
+        when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(addressResponse);
+
+        DictionaryResponse sponsorResponse = DictionaryResponse.builder()
+                .entries(Collections.emptyList())
+                .build();
+        when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(sponsorResponse);
+        Document classifiedDoc = pdfSegmentationService.parseDocument(pdfFileResource.getInputStream());
+        entityRedactionService.processDocument(classifiedDoc, TEST_DOSSIER_TEMPLATE_ID, null, "dossierId", null);
+        assertThat(classifiedDoc.getEntities()).hasSize(1); // one page
+        assertThat(classifiedDoc.getEntities().get(1).stream().filter(entity -> entity.getMatchedRule() == 8).count()).isEqualTo(6);
+    }
+
+
+    @Before
+    public void stubRedaction() {
+        String tableRules = "package drools\n" +
+                "\n" +
+                "import com.iqser.red.service.redaction.v1.server.redaction.model.Section\n" +
+                "\n" +
+                "global Section section\n" +
+                "rule \"8: Not redacted because Vertebrate Study = N\"\n" +
+                "    when\n" +
+                "        Section(rowEquals(\"Vertebrate study Y/N\", \"N\") || rowEquals(\"Vertebrate study Y/N\", \"No\"))\n" +
+                "    then\n" +
+                "        section.redactNotCell(\"Author(s)\", 8,  \"name\", false, \"Not redacted because row is not a vertebrate study\");\n" +
+                "        section.redactNot(\"address\", 8, \"Not redacted because row is not a vertebrate study\");\n" +
+                "        section.highlightCell(\"Vertebrate study Y/N\", 8, \"hint_only\");\n" +
+                "    end\n" +
+                "rule \"9: Redact Authors and Addresses in Reference Table, if it is a Vertebrate study\"\n" +
+                "    when\n" +
+                "        Section(rowEquals(\"Vertebrate study Y/N\", \"Y\") || rowEquals(\"Vertebrate study Y/N\", " +
+                "\"Yes\"))\n" +
+                "    then\n" +
+                "        section.redactCell(\"Author(s)\", 9,  \"name\", false, \"Redacted because row is a vertebrate study\", \"Reg (EC) No 1107/2009 Art. 63 (2g)\");\n" +
+                "        section.redact(\"address\", 9, \"Redacted because row is a vertebrate sgitudy\", \"Reg (EC) No" +
+                " 1107/2009 Art. 63 (2g)\");\n" +
+                "        section.highlightCell(\"Vertebrate study Y/N\", 9, \"must_redact\");\n" +
+                "    end";
+        when(rulesClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(RULES_VERSION.incrementAndGet());
+        when(rulesClient.getRules(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(new RulesResponse(tableRules));
+        TypeResponse typeResponse = TypeResponse.builder()
+                .types(Arrays.asList(
+                        TypeResult.builder().dossierTemplateId(TEST_DOSSIER_TEMPLATE_ID).type(AUTHOR_CODE).hexColor("#ffff00").build(),
+                        TypeResult.builder().dossierTemplateId(TEST_DOSSIER_TEMPLATE_ID).type(ADDRESS_CODE).hexColor("#ff00ff").build(),
+                        TypeResult.builder().dossierTemplateId(TEST_DOSSIER_TEMPLATE_ID).type(SPONSOR_CODE).hexColor("#00ffff").build()))
+                .build();
+        when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
+        when(dictionaryClient.getAllTypes(TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(typeResponse);
+
+        // Default empty return to prevent NPEs
+        DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
+                .build();
+        when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(dictionaryResponse);
+        DictionaryResponse addressResponse = DictionaryResponse.builder()
+                .build();
+        when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(addressResponse);
+        DictionaryResponse sponsorResponse = DictionaryResponse.builder()
+                .build();
+        when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_DOSSIER_TEMPLATE_ID, DictionaryResource.GLOBAL_DOSSIER)).thenReturn(sponsorResponse);
+
+        Colors colors = new Colors();
+        colors.setDefaultColor("#acfc00");
+        colors.setNotRedacted("#cccccc");
+        colors.setRequestAdd("#04b093");
+        colors.setRequestRemove("#04b093");
+
+        when(dictionaryClient.getColors(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(colors);
+    }
+
+
+    private static String loadFromClassPath(String path) {
+
+        URL resource = ResourceLoader.class.getClassLoader().getResource(path);
+        if (resource == null) {
+            throw new IllegalArgumentException("could not load classpath resource: drools/rules.drl");
+        }
+        try (BufferedReader br = new BufferedReader(new InputStreamReader(resource.openStream(), StandardCharsets.UTF_8))) {
+            StringBuilder sb = new StringBuilder();
+            String str;
+            while ((str = br.readLine()) != null) {
+                sb.append(str).append("\n");
+            }
+            return sb.toString();
+        } catch (IOException e) {
+            throw new IllegalArgumentException("could not load classpath resource: " + path, e);
+        }
+    }
+
+    private List<DictionaryEntry> toDictionaryEntry(List<String> entries) {
+        List<DictionaryEntry> dictionaryEntries = new ArrayList<>();
+        entries.forEach(entry -> {
+            dictionaryEntries.add(new DictionaryEntry(entry, 1L, false));
+        });
+        return dictionaryEntries;
+    }
+
+}

redaction-service-v1/redaction-service-server-v1/src/test/java/com/iqser/red/service/redaction/v1/server/redaction/utils/EntitySearchUtilsTest.java

@@ -1,30 +0,0 @@
-package com.iqser.red.service.redaction.v1.server.redaction.utils;
-
-import static org.assertj.core.api.Assertions.assertThat;
-
-import java.util.HashSet;
-import java.util.Set;
-
-import org.junit.Test;
-
-import com.iqser.red.service.redaction.v1.model.Engine;
-import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
-
-public class EntitySearchUtilsTest {
-
-    @Test
-    public void testNestedEntitiesRemoval() {
-
-        Set<Entity> entities = new HashSet<>();
-        Entity nested = new Entity("nested", "fake type", 10, 16, "fake headline", 0, false, false, Engine.RULE);
-        Entity nesting = new Entity("nesting nested", "fake type", 2, 16, "fake headline", 0, false, false, Engine.RULE);
-        entities.add(nested);
-        entities.add(nesting);
-        EntitySearchUtils.removeEntitiesContainedInLarger(entities);
-
-        assertThat(entities.size()).isEqualTo(1);
-        assertThat(entities).contains(nesting);
-
-    }
-
-}

redaction-service-v1/redaction-service-server-v1/src/test/java/com/iqser/red/service/redaction/v1/server/redaction/utils/SectionTextServiceTest.java

@@ -0,0 +1,80 @@
+package com.iqser.red.service.redaction.v1.server.redaction.utils;
+
+import com.amazonaws.services.s3.AmazonS3;
+import com.fasterxml.jackson.databind.ObjectMapper;
+import com.iqser.red.service.redaction.v1.model.ManualRedactions;
+import com.iqser.red.service.redaction.v1.model.RedactionLog;
+import com.iqser.red.service.redaction.v1.model.SectionGrid;
+import com.iqser.red.service.redaction.v1.server.Application;
+import com.iqser.red.service.redaction.v1.server.redaction.service.DictionaryService;
+import com.iqser.red.service.redaction.v1.server.redaction.service.RedactionLogMergeService;
+import com.iqser.red.service.redaction.v1.server.redaction.service.SectionTextService;
+import lombok.SneakyThrows;
+import org.apache.commons.compress.utils.Lists;
+import org.assertj.core.util.Sets;
+import org.junit.Test;
+import org.junit.runner.RunWith;
+import org.mockito.Mockito;
+import org.springframework.beans.factory.annotation.Autowired;
+import org.springframework.boot.autoconfigure.EnableAutoConfiguration;
+import org.springframework.boot.autoconfigure.amqp.RabbitAutoConfiguration;
+import org.springframework.boot.test.context.SpringBootTest;
+import org.springframework.boot.test.mock.mockito.MockBean;
+import org.springframework.context.annotation.Configuration;
+import org.springframework.context.annotation.Import;
+import org.springframework.core.io.ClassPathResource;
+import org.springframework.test.context.junit4.SpringRunner;
+
+import static org.assertj.core.api.Assertions.assertThat;
+import static org.mockito.Mockito.when;
+
+@RunWith(SpringRunner.class)
+@SpringBootTest(classes = Application.class, webEnvironment = SpringBootTest.WebEnvironment.MOCK)
+@Import(SectionTextServiceTest.TestConfiguration.class)
+public class SectionTextServiceTest {
+
+    @Autowired
+    private ObjectMapper objectMapper;
+
+    @Autowired
+    private SectionTextService service;
+
+    @Autowired
+    private RedactionLogMergeService redactionLogMergeService;
+
+    @MockBean
+    private DictionaryService dictionaryService;
+
+    @MockBean
+    private AmazonS3 amazonS3;
+
+
+    @Configuration
+    @EnableAutoConfiguration(exclude = {RabbitAutoConfiguration.class})
+    public static class TestConfiguration {
+
+    }
+
+
+    @Test
+    @SneakyThrows
+    public void testMerge() {
+
+        when(dictionaryService.getColor(Mockito.anyString(), Mockito.anyString())).thenReturn(new float[]{0, 0, 0});
+
+        ManualRedactions manualRedactions = objectMapper.readValue(new ClassPathResource("contains/manual-redactions.json").getInputStream(), ManualRedactions.class);
+
+        RedactionLog redactionLog = new RedactionLog(1, Lists.newArrayList(), Lists.newArrayList(), 1, 1, 1, 1);
+        SectionGrid sectionGrid = objectMapper.readValue(new ClassPathResource("contains/sections.json").getInputStream(), SectionGrid.class);
+        RedactionLog merged = redactionLogMergeService.mergeRedactionLogData(redactionLog, sectionGrid, "1", manualRedactions, Sets.newHashSet());
+
+        assertThat(merged.getRedactionLogEntry().isEmpty()).isFalse();
+
+        assertThat(merged.getRedactionLogEntry().iterator().next().getSection()).isEqualTo("NOTIFICATION OF AN ACTIVE\n" +
+                "SUBSTANCE UNDER COMMISSION\n" +
+                "REGULATION (EU) 844/2012");
+        assertThat(merged.getRedactionLogEntry().iterator().next().getSectionNumber()).isEqualTo(7);
+    }
+
+
+}

redaction-service-v1/redaction-service-server-v1/src/test/resources/application.yml

@@ -1,7 +1,6 @@
 configuration-service.url: "http://configuration-service-v1:8080"
 image-service.url: "http://image-service-v1:8080"
 file-management-service.url: "http://file-management-service-v1:8080"
-entity-recognition-service.url: "localhost:8080"
 
 ribbon:
   ConnectTimeout: 600000
@@ -18,4 +17,3 @@ platform.multi-tenancy:
 
 redaction-service:
   enable-image-classification: false
-  enable-entity-recognition: false

redaction-service-v1/redaction-service-server-v1/src/test/resources/contains/manual-redactions.json

@@ -0,0 +1,54 @@
+{
+  "idsToRemove": [],
+  "entriesToAdd": [
+    {
+      "id": "d5fd9fd9690557703a22d8ab22832c7f",
+      "user": "7adf30b4-a0d8-4abb-adbb-760b1211098f",
+      "type": "manual",
+      "value": "DOCUMENT M-CA, Section 10\nSupplement",
+      "reason": "names and addresses of persons involved in testing on vertebrate animals",
+      "legalBasis": "[Reg (EC) No 1107/2009 Art. 63 (2g)]",
+      "section": null,
+      "positions": [
+        {
+          "topLeft": {
+            "x": 190.92,
+            "y": 376.7999
+          },
+          "width": 227.49368,
+          "height": 14.974969,
+          "page": 1
+        },
+        {
+          "topLeft": {
+            "x": 258.96,
+            "y": 358.31992
+          },
+          "width": 91.47408,
+          "height": 14.974969,
+          "page": 1
+        }
+      ],
+      "status": "APPROVED",
+      "addToDictionary": false,
+      "addToDossierDictionary": false,
+      "requestDate": "2021-11-03T15:01:45Z",
+      "processedDate": "2021-11-03T15:01:45Z",
+      "softDeletedTime": null
+    }
+  ],
+  "forceRedactions": [],
+  "imageRecategorization": [],
+  "legalBasisChanges": [],
+  "comments": {
+    "d5fd9fd9690557703a22d8ab22832c7f": [
+      {
+        "id": "56c1a675-0d64-4190-b76c-6af9d0b361a9",
+        "date": "2021-11-03T15:01:45Z",
+        "text": "test",
+        "user": "7adf30b4-a0d8-4abb-adbb-760b1211098f",
+        "softDeletedTime": null
+      }
+    ]
+  }
+}

redaction-service-v1/redaction-service-server-v1/src/test/resources/contains/sections.json

@@ -0,0 +1,877 @@
+{
+  "rectanglesPerPage": {
+    "1": [
+      {
+        "topLeft": {
+          "x": 251.4,
+          "y": 550.32
+        },
+        "width": 107.763336,
+        "height": 12.02002,
+        "part": 1,
+        "numberOfParts": 1,
+        "tableCells": null
+      },
+      {
+        "topLeft": {
+          "x": 159.24,
+          "y": 280.92004
+        },
+        "width": 291.92004,
+        "height": 212.29996,
+        "part": 1,
+        "numberOfParts": 3,
+        "tableCells": null
+      }
+    ],
+    "2": [
+      {
+        "topLeft": {
+          "x": 70.92,
+          "y": 735.36
+        },
+        "width": 105.64288,
+        "height": 9.02002,
+        "part": 2,
+        "numberOfParts": 3,
+        "tableCells": null
+      },
+      {
+        "topLeft": {
+          "x": 65.56436,
+          "y": 719.9557
+        },
+        "width": 478.4686,
+        "height": -110.91278,
+        "part": 3,
+        "numberOfParts": 3,
+        "tableCells": [
+          {
+            "topLeft": {
+              "x": 65.56436,
+              "y": 684.47955
+            },
+            "width": 83.35573,
+            "height": 35.476135
+          },
+          {
+            "topLeft": {
+              "x": 148.92009,
+              "y": 684.47955
+            },
+            "width": 255.12016,
+            "height": 35.476135
+          },
+          {
+            "topLeft": {
+              "x": 404.04025,
+              "y": 684.47955
+            },
+            "width": 139.9927,
+            "height": 35.476135
+          },
+          {
+            "topLeft": {
+              "x": 65.56436,
+              "y": 659.27954
+            },
+            "width": 83.35573,
+            "height": 25.200012
+          },
+          {
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+              "y": 659.27954
+            },
+            "width": 255.12016,
+            "height": 25.200012
+          },
+          {
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+              "y": 659.27954
+            },
+            "width": 139.9927,
+            "height": 25.200012
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+    ]
+  },
+  "sections": [
+    {
+      "sectionNumber": 1,
+      "headline": "",
+      "pages": [
+        1
+      ],
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+      "sectionNumber": 2,
+      "headline": "Table in: NOTIFICATION OF AN ACTIVE\nSUBSTANCE UNDER COMMISSION\nREGULATION (EU) 844/2012",
+      "pages": [
+        2
+      ],
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+      "sectionAreas": []
+    },
+    {
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+      "headline": "Table in: NOTIFICATION OF AN ACTIVE\nSUBSTANCE UNDER COMMISSION\nREGULATION (EU) 844/2012",
+      "pages": [],
+      "sectionAreas": []
+    },
+    {
+      "sectionNumber": 5,
+      "headline": "Table in: NOTIFICATION OF AN ACTIVE\nSUBSTANCE UNDER COMMISSION\nREGULATION (EU) 844/2012",
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+          "header": "Date"
+        }
+      ]
+    },
+    {
+      "sectionNumber": 7,
+      "headline": "NOTIFICATION OF AN ACTIVE\nSUBSTANCE UNDER COMMISSION\nREGULATION (EU) 844/2012",
+      "pages": [
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+        2
+      ],
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+    {
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+      "headline": "Table in: Table of Contents",
+      "pages": [
+        4
+      ],
+      "sectionAreas": [
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+      ]
+    },
+    {
+      "sectionNumber": 9,
+      "headline": "Table of Contents",
+      "pages": [
+        3,
+        4
+      ],
+      "sectionAreas": [
+        {
+          "topLeft": {
+            "x": 70.92,
+            "y": 691.2
+          },
+          "width": 468.76624,
+          "height": 53.179993,
+          "page": 3,
+          "header": null
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+          },
+          "width": 461.24002,
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+          "page": 4,
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+      ]
+    },
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+}

redaction-service-v1/redaction-service-server-v1/src/test/resources/dictionaries/PII.txt

@@ -0,0 +1,5 @@
+Amendment 1
+Report Number: 33168
+Page
+Report Number: BFI0714
+Tesh Consultants International

redaction-service-v1/redaction-service-server-v1/src/test/resources/drools/rules.drl

@@ -56,8 +56,8 @@ rule "5: Do not redact Names and Addresses if no redaction Indicator is containe
     when
         Section(matchesType("vertebrate"), matchesType("published_information"))
     then
-        section.redactNotAndReference("CBI_author","published_information", 5, "Vertebrate and Published Information found");
-        section.redactNotAndReference("CBI_address","published_information", 5, "Vertebrate and Published Information found");
+        section.redactNot("CBI_author", 5, "Vertebrate and Published Information found");
+        section.redactNot("CBI_address", 5, "Vertebrate and Published Information found");
     end