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113 Commits
Author SHA1 Message Date
Timo Bejan 78de7371a0 Pull request #385: RED-3946 - quotation-mark fix
Merge in RED/redaction-service from RED-3946-qf to master

* commit 'df2fcd2e5e48298131ebf7a00bf2ed80a9fc2d96':
  RED-3946 - quotation-mark fix
2022-05-09 14:47:03 +02:00
Dominique Eiflaender 924f791e4d Pull request #386: RED-3959: Do not remove entities on larger false_recommendactions
Merge in RED/redaction-service from RED-3959 to master

* commit '542bbb294a27bf2eb2832a144d239b820bbc0b5f':
  RED-3959: Do not remove entities on larger false_recommendactions
2022-05-09 12:34:13 +02:00
deiflaender 542bbb294a RED-3959: Do not remove entities on larger false_recommendactions 2022-05-09 12:27:36 +02:00
Timo Bejan df2fcd2e5e RED-3946 - quotation-mark fix 2022-05-09 12:14:09 +03:00
Timo Bejan 8e819a0d26 Pull request #384: RED-3992
Merge in RED/redaction-service from RED-3992 to master

* commit '01e7115d301d8706962390b76af0769eab67c1fe':
  RED-3992 - Fixed PMD
  RED-3992 - Replaced naive approach with aho corassick string search. Cleaned up code. reduced ammount of unnecesary conversions/invocations
  RED-3992 - Replaced naive approach with aho corassick string search. Cleaned up code. reduced ammount of unnecesary conversions/invocations
  RED-3800 Exception handling for processed files
2022-05-09 10:05:50 +02:00
Timo Bejan 01e7115d30 RED-3992 - Fixed PMD 2022-05-09 09:02:11 +03:00
Timo Bejan 747323f882 RED-3992 - Replaced naive approach with aho corassick string search. Cleaned up code. reduced ammount of unnecesary conversions/invocations 2022-05-09 08:44:42 +03:00
Timo Bejan 729a7334d9 Merge branch 'release/3.107.x' into test-performance 2022-05-06 10:28:47 +03:00
Timo Bejan 36967cab2c RED-3992 - Replaced naive approach with aho corassick string search. Cleaned up code. reduced ammount of unnecesary conversions/invocations 2022-05-06 10:28:12 +03:00
Timo Bejan b820463fff RED-3800 Exception handling for processed files 2022-05-04 12:09:46 +03:00
Timo Bejan cfd9d7665b Pull request #383: RED-3946 - added alternative quatation marks as separators
Merge in RED/redaction-service from RED-3946 to master

* commit '23d84980cd1528b1276e28aab81bb5bf0a682256':
  RED-3946 - added alternative quatation marks as separators
2022-05-03 17:15:12 +02:00
Timo Bejan 23d84980cd RED-3946 - added alternative quatation marks as separators 2022-05-03 18:12:07 +03:00
Timo Bejan 314f7ebdd9 Pull request #382: Pdftron api cleanup
Merge in RED/redaction-service from pdftron-api-cleanup to master

* commit 'f666a0330161daed8d3f59189bbe258327926995':
  RED-3800 code cleanup
  RED-3800 code cleanup
2022-05-03 12:26:22 +02:00
Timo Bejan f666a03301 RED-3800 code cleanup 2022-05-03 13:23:10 +03:00
Timo Bejan 313ec32d30 RED-3800 code cleanup 2022-05-03 13:04:00 +03:00
Timo Bejan 76dca41299 Pull request #381: RED-3915 - source id
Merge in RED/redaction-service from RED-3915 to master

* commit 'f21e48e3d75c78e0ce5cf92a614e92e9c721eede':
  RED-3915 - source id
2022-04-25 15:03:29 +02:00
Timo Bejan f21e48e3d7 RED-3915 - source id 2022-04-25 15:46:12 +03:00
Dominique Eiflaender bbd60e4bf4 Pull request #379: RED-3774: Always prefer entities over recommendactions
Merge in RED/redaction-service from RED-3774 to master

* commit 'ecf794ff37ae5cdeb8aa63f69d6e5205c6da1271':
  RED-3774: Always prefer entities over recommendactions
2022-04-20 12:20:01 +02:00
deiflaender ecf794ff37 RED-3774: Always prefer entities over recommendactions 2022-04-20 12:07:31 +02:00
Dominique Eiflaender 5d8f44d55d Pull request #378: RED-3658: Fixed annotation positions for document with rotation = 180 and text direction = 180
Merge in RED/redaction-service from RED-3658 to master

* commit '513fbbb38d2b9efff6b58489c518db53961e9464':
  RED-3658: Fixed annotation positions for document with rotation = 180 and text direction = 180
2022-04-20 10:17:34 +02:00
deiflaender 513fbbb38d RED-3658: Fixed annotation positions for document with rotation = 180 and text direction = 180 2022-04-20 09:58:26 +02:00
Timo Bejan 6178efb7ef Pull request #376: soft delete types RED-3880
Merge in RED/redaction-service from RED-3880 to master

* commit '7a9bb45b6dbfde2ef68c4ac19d4a144a272e5571':
  soft delete types RED-3880
  soft delete types RED-3880
2022-04-19 14:01:31 +02:00
Timo Bejan 7a9bb45b6d soft delete types RED-3880 2022-04-19 14:54:44 +03:00
Timo Bejan 00f2a0cb82 soft delete types RED-3880 2022-04-19 14:32:23 +03:00
Timo Bejan 1eb0485dca Pull request #375: RED-3800 java-18 support
Merge in RED/redaction-service from JAVA-18-support to master

* commit 'be15d38065fc6915f815a586d468235b38362e93':
  RED-3800 java-18 support
2022-04-14 10:52:02 +02:00
Timo Bejan be15d38065 RED-3800 java-18 support 2022-04-14 11:44:47 +03:00
deiflaender f154065824 RED-3877: Fixed missing images after migration 2022-04-14 10:38:30 +02:00
Dominique Eiflaender d4b0de9184 Pull request #374: RED-3616: Fixed removing not redaction images that intersects imported redactions
Merge in RED/redaction-service from RED-3616-11 to master

* commit 'fbd9bc71a80ba7788992c6213fd88ce649e127e2':
  RED-3616: Fixed removing not redaction images that intersects imported redactions
2022-04-12 11:18:53 +02:00
deiflaender fbd9bc71a8 RED-3616: Fixed removing not redaction images that intersects imported redactions 2022-04-12 11:09:25 +02:00
Dominique Eiflaender c963c7ac32 Pull request #373: RED-3666: Added rule function Section containsRegEx
Merge in RED/redaction-service from RED-3666 to master

* commit '404fd25be0e8ee20528c1f9491f85d8b695a2433':
  RED-3666: Added rule function Section containsRegEx
2022-04-11 13:02:02 +02:00
deiflaender 404fd25be0 RED-3666: Added rule function Section containsRegEx 2022-04-11 12:57:57 +02:00
Kresnadi Budisantoso efd53066c4 Pull request #371: RED-3761 Fix expandByRegEx and expandByPrefixRegEx
Merge in RED/redaction-service from kbudisantoso/RED-3761-fix-filter-expanded to master

* commit '5b5d898b933c3ae79fb7cb07a6105b15d2952f8e':
  RED-3761 Fix expandByRegEx and expandByPrefixRegEx
2022-04-11 12:51:57 +02:00
Kresnadi Budisantoso 5b5d898b93 RED-3761 Fix expandByRegEx and expandByPrefixRegEx
Adjusted the overlap test to ignore if the compared entities are subsets
of each other (start or end position is equal). The `removeEntitiesContainedInLarger`
instruction will remove the subset entity.
2022-04-11 11:54:30 +02:00
Dominique Eiflaender cf75ac56cc Pull request #372: RED-3802: Fixed prefer redactions over recommendations
Merge in RED/redaction-service from RED-3802 to master

* commit '1a6a1a008f76897f01f10dd40ea0307c2c84175c':
  RED-3802: Fixed prefer redactions over recommendations
2022-04-11 11:04:55 +02:00
deiflaender 1a6a1a008f RED-3802: Fixed prefer redactions over recommendations 2022-04-11 11:00:07 +02:00
Ali Oezyetimoglu e19b4573bb Pull request #370: RED-3809: Upgrade to latest spring version
Merge in RED/redaction-service from RED-3809-rs1 to master

* commit '150ee92c1e63de2145a1a093e6c6fe7820b7256d':
  RED-3809: Upgrade to latest spring version
2022-04-08 11:40:40 +02:00
aoezyetimoglu 150ee92c1e RED-3809: Upgrade to latest spring version 2022-04-08 11:19:53 +02:00
Kresnadi Budisantoso 7988a8de66 Pull request #369: RED-3761 prevent compiledPrefixPattern to be nullable by testing prefixPattern parameter
Merge in RED/redaction-service from kbudisantoso/RED-3761-prevent-nullable to master

* commit '0014d7725ab3f82d2fba4f0677c3966324504876':
  RED-3761 prevent compiledPrefixPattern to be nullable by testing prefixPattern parameter
2022-04-06 12:52:24 +02:00
Kresnadi Budisantoso 0014d7725a RED-3761 prevent compiledPrefixPattern to be nullable by testing prefixPattern parameter 2022-04-06 11:38:20 +02:00
Christoph Schabert 55f608cf99 Pull request #368: verify version finding
Merge in RED/redaction-service from autoRelease to master

* commit '52e5c58d6e2a30744b3c9b5220edb102b457c8b0':
  verify version finding
2022-04-06 11:03:54 +02:00
cschabert f3ad0749b8 add build version output 2022-04-05 11:15:37 +02:00
Dominique Eiflaender 0f0aee9480 Pull request #367: RED-3616: Do not remove annotation that intersects with skipped imported redactions
Merge in RED/redaction-service from RED-3616 to master

* commit '941448492bfe294634a8c3c309f237034245e842':
  RED-3616: Do not remove annotation that intersects with skipped imported redactions
2022-04-05 10:22:08 +02:00
cschabert ff22dd1a49 verify version check 2022-04-05 09:26:05 +02:00
cschabert 52e5c58d6e verify version finding 2022-04-05 09:22:31 +02:00
deiflaender 941448492b RED-3616: Do not remove annotation that intersects with skipped imported redactions 2022-04-05 08:59:18 +02:00
Christoph Schabert 49d47a0682 Pull request #365: Change Major Version to 3.x
Merge in RED/redaction-service from cschabert/pomxml-1649055501527 to master

* commit '9bab1205b711d94888a6b3364a41a89d07d310b6':
  Change Major Version to 3.x
2022-04-04 09:21:17 +02:00
Christoph Schabert 9bab1205b7 Change Major Version to 3.x 2022-04-04 08:58:35 +02:00
Kresnadi Budisantoso 7963c57552 Pull request #364: RED-3761 add possibility to expand dictionary match with a prefix regex pattern
Merge in RED/redaction-service from kbudisantoso/RED-3761-expandByPrefixRegEx to master

* commit '1427087d8fa29a218b8b378f83c345c497a26b77':
  RED-3761 add possibility to expand dictionary match with a prefix regex pattern
2022-04-01 15:35:45 +02:00
Kresnadi Budisantoso 1427087d8f RED-3761 add possibility to expand dictionary match with a prefix regex pattern 2022-04-01 14:21:47 +02:00
Christoph Schabert b83400ffa3 Pull request #362: automate releases
Merge in RED/redaction-service from autoRelease to master

* commit 'f05f2b21a46b8a4f15bd933570d5a107351aa7b7':
  automate releases
2022-04-01 14:12:09 +02:00
cschabert f05f2b21a4 automate releases 2022-04-01 13:47:26 +02:00
Philipp Schramm 02d9ebc24c Pull request #360: RED-3568: Do not ignore textblocks if only rotated pages are in the document
Merge in RED/redaction-service from RED-3568 to master

* commit 'ae3e4570c15dbc2c46373ce68d55cec760e7da6b':
  RED-3568: Do not ignore textblocks if only rotated pages are in the document
2022-03-29 14:00:20 +02:00
deiflaender ae3e4570c1 RED-3568: Do not ignore textblocks if only rotated pages are in the document 2022-03-29 13:54:23 +02:00
Dominique Eiflaender a975596446 Pull request #359: RED-3699 master
Merge in RED/redaction-service from RED-3699-master to master

* commit 'a5b96f148950e28618028daef1e91aecdadc89e3':
  Fixed unknown type for manual type
  Fixed bug in getColors
  RED-3699:  Do not call updateDictionary on merge RedactionLog
2022-03-25 09:20:52 +01:00
deiflaender a5b96f1489 Fixed unknown type for manual type 2022-03-25 09:12:32 +01:00
deiflaender 4814ce3650 Fixed bug in getColors 2022-03-25 09:12:21 +01:00
deiflaender 7fccdb32c5 RED-3699: Do not call updateDictionary on merge RedactionLog 2022-03-25 09:12:00 +01:00
Timo Bejan 1d389b78fd Pull request #357: processed date fix
Merge in RED/redaction-service from processed-date-fix-3.3.x to master

* commit 'b4916b65b661c80f0924c163b8795205b9c8e6c3':
  processed date fix
2022-03-24 11:52:29 +01:00
Timo Bejan b4916b65b6 processed date fix 2022-03-24 10:16:49 +02:00
Dominique Eiflaender e1db383463 Pull request #356: RED-2836: Fixed calculating dictionary increments with false_positive and false_recommendation
Merge in RED/redaction-service from RED-2836-3 to master

* commit '4d2a7d454d916e7eee65f7cc155323924c2cb229':
  RED-2836: Fixed calculating dictionary increments with false_positive and false_recommendation
2022-03-22 10:31:05 +01:00
deiflaender 4d2a7d454d RED-2836: Fixed calculating dictionary increments with false_positive and false_recommendation 2022-03-22 10:24:26 +01:00
Dominique Eiflaender 3758720683 Pull request #355: Renamed result field in research services to data
Merge in RED/redaction-service from ResearchRename to master

* commit '22bb0b44db7a22f8088512570d4b2be6e742a887':
  Renamed result field in research services to data
2022-03-21 16:02:45 +01:00
deiflaender 22bb0b44db Renamed result field in research services to data 2022-03-21 15:54:37 +01:00
Dominique Eiflaender e93f5d147f Pull request #354: RED-2836: Enabled false positives per dictionary
Merge in RED/redaction-service from RED-2836 to master

* commit '88e6ac3d2291ced8bb2229c3e7daeb8d78d6da93':
  RED-2836: Enabled false positives per dictionary
2022-03-21 12:54:48 +01:00
deiflaender 88e6ac3d22 RED-2836: Enabled false positives per dictionary 2022-03-21 12:47:27 +01:00
Timo Bejan 17b885d901 Pull request #353: pending add to dict
Merge in RED/redaction-service from pending-master-fix to master

* commit '50d9f4fec22768310232988ee01f9e9aa3ba9dc8':
  pending add to dict
2022-03-21 11:49:16 +01:00
Timo Bejan 50d9f4fec2 pending add to dict 2022-03-21 11:19:26 +02:00
Philipp Schramm 1bcf0a3f07 Pull request #351: RED-3553 If image overlaps entity and the entity will be removed
Merge in RED/redaction-service from RED-3553 to master

* commit '1f6a9aa14deb7ec65fee03e28758f8e3157dbd5f':
  RED-3553 If image overlaps entity and the entity will be removed
2022-03-17 14:17:16 +01:00
Philipp Schramm 1f6a9aa14d RED-3553 If image overlaps entity and the entity will be removed 2022-03-17 14:04:59 +01:00
Dominique Eiflaender c8cf0078eb Pull request #352: PortsFrom3.2.x
Merge in RED/redaction-service from portsFrom3.2.x to master

* commit 'b13a695c64280a97ece198a18605c0f1b5cf753f':
  RED-3611: Added priority mode that only listens to priority queue
  RED-3620: Fixed remove from dictionary
2022-03-17 11:16:03 +01:00
deiflaender b13a695c64 RED-3611: Added priority mode that only listens to priority queue 2022-03-17 10:50:48 +01:00
deiflaender 32a907f697 RED-3620: Fixed remove from dictionary 2022-03-17 10:49:01 +01:00
Timo Bejan 1d1de6caba Pull request #350: Removed processed date filter for add to dictionary entries
Merge in RED/redaction-service from RED-3538 to master

* commit '7b2295393c1c2dcbcecbb11c64929517cb13a6de':
  Removed processed date filter for add to dictionary entries
2022-03-16 15:46:13 +01:00
Timo Bejan 7b2295393c Removed processed date filter for add to dictionary entries 2022-03-16 16:29:30 +02:00
Timo Bejan d0ba3f51c1 Pull request #347: From version master
Merge in RED/redaction-service from from-version-master to master

* commit 'c432c56a05ce58d711286bbbcc636ff1445c652d':
  Updated Persistence Service Version
  Release 3.80.x branch creation + incremental entry loading based on version for dictionaries
2022-03-14 16:36:14 +01:00
Timo Bejan c432c56a05 Updated Persistence Service Version 2022-03-14 17:29:04 +02:00
Timo Bejan e73da002d5 Release 3.80.x branch creation + incremental entry loading based on version for dictionaries 2022-03-14 17:27:52 +02:00
Philipp Schramm 0ceb8ae266 Pull request #346: RED-3403 Extended Section with negated Methods
Merge in RED/redaction-service from RED-3403 to master

* commit '97fe7383cd9737f25d22903a6124dfe8361f7a84':
  RED-3403 Extended Section with negated Methods
2022-02-28 14:51:21 +01:00
Philipp Schramm 97fe7383cd RED-3403 Extended Section with negated Methods 2022-02-28 14:40:40 +01:00
Dominique Eiflaender 7d132cbb88 Pull request #345: Fixed aws s3 config
Merge in RED/redaction-service from s3FixConf to master

* commit 'd18b5dfd138595f0cbf7cc2a99dc708994141425':
  Fixed aws s3 config
2022-02-25 13:04:36 +01:00
deiflaender d18b5dfd13 Fixed aws s3 config 2022-02-25 12:58:09 +01:00
Dominique Eiflaender e2451a08f4 Pull request #344: RED-3282: Do not add overlapping ai recommendactions
Merge in RED/redaction-service from RED-3282 to master

* commit '537ccb83d799cef0eb437a6bbe1b78da661b2b6b':
  RED-3282: Do not add overlapping ai recommendactions
2022-02-25 09:37:15 +01:00
deiflaender 537ccb83d7 RED-3282: Do not add overlapping ai recommendactions 2022-02-25 09:29:08 +01:00
Ali Oezyetimoglu fd027efa5c Pull request #343: RED-3407: Remove obsolete recommendation dictionaries
Merge in RED/redaction-service from RED-3407-rs1 to master

* commit 'c3984e054482acab3acde740b8dce437d97e9ffb':
  RED-3407: Remove obsolete recommendation dictionaries
2022-02-23 14:59:53 +01:00
aoezyetimoglu c3984e0544 RED-3407: Remove obsolete recommendation dictionaries 2022-02-23 14:29:01 +01:00
Timo Bejan 77feedcc8e Pull request #342: added imported flag
Merge in RED/redaction-service from imported-redaction to master

* commit 'de92117b35fcc2f3979450027acf1f7edf04befa':
  added imported flag
2022-02-11 11:41:32 +01:00
Timo Bejan de92117b35 added imported flag 2022-02-11 11:33:34 +02:00
Philipp Schramm 143f4cfb0d Pull request #341: RED-3350 Communication with entity recognition via queues
Merge in RED/redaction-service from feature/RED-3350 to master

* commit '68727178e79224b7ca7f9f293e48ca21b4ce2f91':
  RED-3350 Communication with entity recognition via queues
2022-02-09 15:24:47 +01:00
Philipp Schramm 68727178e7 RED-3350 Communication with entity recognition via queues 2022-02-09 15:19:55 +01:00
Dominique Eiflaender 90fe282313 Pull request #339: RED-3327: Ignore recommendations if touches other type
Merge in RED/redaction-service from RED-3327-master to master

* commit '8689125ed9b09f73781d3babfd65537c0b1f4afe':
  RED-3327: Ignore recommendations if touches other type
2022-02-01 11:19:26 +01:00
deiflaender 8689125ed9 RED-3327: Ignore recommendations if touches other type 2022-02-01 11:06:32 +01:00
Dominique Eiflaender e68c6798be Pull request #337: RED-3243: Improved imported redactions logic
Merge in RED/redaction-service from RED-3243-8 to master

* commit '58b1db66cc2cc67b3b4e26295478824e5052d6a3':
  RED-3243: Improved imported redactions logic
2022-01-31 14:47:54 +01:00
deiflaender 58b1db66cc RED-3243: Improved imported redactions logic 2022-01-31 14:42:49 +01:00
deiflaender 0072d38d68 Use base image to speedup build 2022-01-31 12:05:10 +01:00
deiflaender 25a409d3a5 RED-3243: Added ImportedRedaction model classes 2022-01-31 11:11:32 +01:00
Timo Bejan ca1da20ba3 Pull request #335: immutable field fix
Merge in RED/redaction-service from RED-3242 to master

* commit '3c691a1afc9ce67845aad5d15bbc99a0113f6a6b':
  immutable field fix
2022-01-28 10:57:04 +01:00
Timo Bejan 3c691a1afc immutable field fix 2022-01-28 11:29:43 +02:00
Timo Bejan 6813fbc3cb Pull request #333: since no more manual changes are fields of redactionLog, we can safely always merge, even legacy ones
Merge in RED/redaction-service from RED-3242 to master

* commit 'c9a75152fb9b4e02b3421dd16ae54056889b0aa9':
  since no more manual changes are fields of redactionLog, we can safely always merge, even legacy ones
2022-01-27 15:59:39 +01:00
Dominique Eiflaender a8a6fef07a Pull request #334: RED-3239: Protoyped logic for imported redactions
Merge in RED/redaction-service from RED-3239 to master

* commit '26661fa87beeb20b32f2be5a8b1b025e8d2d29fd':
  RED-3239: Protoyped logic for imported redactions
2022-01-27 15:31:16 +01:00
deiflaender 26661fa87b RED-3239: Protoyped logic for imported redactions 2022-01-27 15:21:33 +01:00
Timo Bejan c9a75152fb since no more manual changes are fields of redactionLog, we can safely always merge, even legacy ones 2022-01-27 15:30:43 +02:00
Timo Bejan 0da2a1ab26 Pull request #332: RED-3242 - excluded from automatic analysis - reworked redactionLog architecture
Merge in RED/redaction-service from RED-3242 to master

* commit 'd92a723fea21280d7bf482c3d74c7b177dbaa030':
  RED-3242 - excluded from automatic analysis - reworked redactionLog architecture
2022-01-27 14:06:35 +01:00
Timo Bejan d92a723fea RED-3242 - excluded from automatic analysis - reworked redactionLog architecture 2022-01-27 14:58:14 +02:00
Dominique Eiflaender 3109e3e4f0 Pull request #331: RED-3133: Ignore min length for values from ai
Merge in RED/redaction-service from RED-3133-Fix4 to master

* commit 'a1544588e8a3cfa0479d5d31d82463c5434674a1':
  RED-3133: Ignore min length for values from ai
2022-01-26 16:32:23 +01:00
deiflaender a1544588e8 RED-3133: Ignore min length for values from ai 2022-01-26 16:18:41 +01:00
Dominique Eiflaender 8ba2bd776d Pull request #330: RED-3133: Fixed wrong ai entries again
Merge in RED/redaction-service from RED-3133-Fix2 to master

* commit '8ac7c309d981c8899eca40872a49198284d15944':
  RED-3133: Fixed wrong ai entries again
2022-01-26 15:42:13 +01:00
deiflaender 8ac7c309d9 RED-3133: Fixed wrong ai entries again 2022-01-26 15:31:13 +01:00
Dominique Eiflaender b8f7be28e7 Pull request #329: RED-3133: Fixed wrong ai entries
Merge in RED/redaction-service from RED-3133-Fix to master

* commit '921ae1839cb424a4d82afd88401fddc9cf855f8c':
  RED-3133: Fixed wrong ai entries
2022-01-26 15:09:04 +01:00
deiflaender 921ae1839c RED-3133: Fixed wrong ai entries 2022-01-26 14:43:54 +01:00
Dominique Eiflaender 38a386bc87 Pull request #328: RED-3133: Fixed bug in address combination rule
Merge in RED/redaction-service from RED-3133-4 to master

* commit 'c21cf3dd5cdf70dfb838bb18f78a7c32715f8db8':
  RED-3133: Fixed bug in address combination rule
2022-01-26 13:09:13 +01:00
deiflaender c21cf3dd5c RED-3133: Fixed bug in address combination rule 2022-01-26 12:57:02 +01:00
Dominique Eiflaender 29ad27dea6 Pull request #326: RED-3243: Fixed bug in combining address parts
Merge in RED/redaction-service from RED-3243 to master

* commit '6a78d798912afd4d625455d62d2ec416a311873b':
  RED-3243: Fixed bug in combining address parts
2022-01-24 12:53:40 +01:00
deiflaender 6a78d79891 RED-3243: Fixed bug in combining address parts 2022-01-24 12:35:38 +01:00
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<parent>
<groupId>com.atlassian.bamboo</groupId>
<artifactId>bamboo-specs-parent</artifactId>
<version>8.0.3</version>
<version>8.1.3</version>
<relativePath/>
</parent>
@@ -17,6 +17,7 @@ import com.atlassian.bamboo.specs.api.builders.plan.branches.BranchCleanup;
import com.atlassian.bamboo.specs.api.builders.plan.branches.PlanBranchManagement;
import com.atlassian.bamboo.specs.api.builders.project.Project;
import com.atlassian.bamboo.specs.builders.task.CheckoutItem;
import com.atlassian.bamboo.specs.api.builders.Variable;
import com.atlassian.bamboo.specs.builders.task.InjectVariablesTask;
import com.atlassian.bamboo.specs.builders.task.ScriptTask;
import com.atlassian.bamboo.specs.builders.task.VcsCheckoutTask;
@@ -83,6 +84,7 @@ public class PlanSpec {
project(),
SERVICE_NAME, new BambooKey(SERVICE_KEY))
.description("Plan created from (enter repository url of your plan)")
.variables(new Variable("maven_add_param", ""))
.stages(new Stage("Default Stage")
.jobs(new Job("Default Job",
new BambooKey("JOB1"))
@@ -94,6 +96,7 @@ public class PlanSpec {
"rm -rf ./*"),
new VcsCheckoutTask()
.description("Checkout Default Repository")
.cleanCheckout(true)
.checkoutItems(new CheckoutItem().defaultRepository()),
new ScriptTask()
.description("Build")
@@ -115,7 +118,7 @@ public class PlanSpec {
.defaultRepository())
.dockerConfiguration(
new DockerConfiguration()
.image("nexus.iqser.com:5001/infra/maven:3.6.2-jdk-13-3.0.0")
.image("nexus.iqser.com:5001/infra/maven:3.8.4-openjdk-17-slim")
.volume("/etc/maven/settings.xml", "/usr/share/maven/ref/settings.xml")
.volume("/var/run/docker.sock", "/var/run/docker.sock")
)
@@ -147,6 +150,7 @@ public class PlanSpec {
"rm -rf ./*"),
new VcsCheckoutTask()
.description("Checkout Default Repository")
.cleanCheckout(true)
.checkoutItems(new CheckoutItem().defaultRepository()),
new ScriptTask()
.description("Sonar")
@@ -155,9 +159,9 @@ public class PlanSpec {
.argument(SERVICE_NAME))
.dockerConfiguration(
new DockerConfiguration()
.image("nexus.iqser.com:5001/infra/maven:3.6.2-jdk-13-3.0.0")
.image("nexus.iqser.com:5001/infra/maven:3.8.4-openjdk-17-slim")
.dockerRunArguments("--net=host")
.volume("/etc/maven/settings.xml", "/usr/share/maven/ref/settings.xml")
.volume("/etc/maven/settings.xml", "/usr/share/maven/conf/settings.xml")
.volume("/var/run/docker.sock", "/var/run/docker.sock")
)
)
@@ -165,8 +169,7 @@ public class PlanSpec {
.linkedRepositories("RED / " + SERVICE_NAME)
.triggers(
new ScheduledTrigger()
.scheduleOnceDaily(LocalTime.of(12, 00)),
new BitbucketServerTrigger())
.scheduleOnceDaily(LocalTime.of(23, 00)))
.planBranchManagement(new PlanBranchManagement()
.createForVcsBranchMatching("release.*")
.notificationForCommitters());
@@ -3,49 +3,62 @@ set -e
SERVICE_NAME=$1
if [[ "${bamboo_version_tag}" = "dev" ]]
then
${bamboo_capability_system_builder_mvn3_Maven_3}/bin/mvn \
-f ${bamboo_build_working_directory}/$SERVICE_NAME-v1/pom.xml \
if [[ "$bamboo_planRepository_branchName" == "master" ]]
then
branchVersion=$(cat pom.xml | grep -Eo " <version>.*-SNAPSHOT</version>" | sed -s 's|<version>\(.*\)\..*\(-*.*\)</version>|\1|' | tr -d ' ')
latestVersion=$( semver $(git tag -l "${branchVersion}.*" ) | tail -n1 )
newVersion="$(semver $latestVersion -p -i minor)"
echo "new release on master with version $newVersion"
elif [[ "$bamboo_planRepository_branchName" == release* ]]
then
branchVersion=$(echo $bamboo_planRepository_branchName | sed -s 's|release\/\([0-9]\+\.[0-9]\+\)\.x|\1|')
latestVersion=$( semver $(git tag -l "${branchVersion}.*" ) | tail -n1 )
newVersion="$(semver $latestVersion -p -i patch)"
echo "new release on $bamboo_planRepository_branchName with version $newVersion"
elif [[ "${bamboo_version_tag}" != "dev" ]]
then
newVersion="${bamboo_version_tag}"
echo "new special version bild with $newVersion"
else
mvn -f ${bamboo_build_working_directory}/$SERVICE_NAME-v1/pom.xml \
--no-transfer-progress \
${bamboo_maven_add_param} \
clean install \
-Djava.security.egd=file:/dev/./urandomelse
else
${bamboo_capability_system_builder_mvn3_Maven_3}/bin/mvn \
--no-transfer-progress \
-f ${bamboo_build_working_directory}/$SERVICE_NAME-v1/pom.xml \
versions:set \
-DnewVersion=${bamboo_version_tag}
${bamboo_capability_system_builder_mvn3_Maven_3}/bin/mvn \
--no-transfer-progress \
-f ${bamboo_build_working_directory}/$SERVICE_NAME-image-v1/pom.xml \
versions:set \
-DnewVersion=${bamboo_version_tag}
${bamboo_capability_system_builder_mvn3_Maven_3}/bin/mvn \
-f ${bamboo_build_working_directory}/$SERVICE_NAME-v1/pom.xml \
--no-transfer-progress \
clean deploy \
-e \
-DdeployAtEnd=true \
-Dmaven.wagon.http.ssl.insecure=true \
-Dmaven.wagon.http.ssl.allowall=true \
-Dmaven.wagon.http.ssl.ignore.validity.dates=true \
-DaltDeploymentRepository=iqser_release::default::https://nexus.iqser.com/repository/red-platform-releases
echo "dev build with tag ${bamboo_planRepository_1_branch}_${bamboo_buildNumber}"
echo "gitTag=${bamboo_planRepository_1_branch}_${bamboo_buildNumber}" > git.tag
exit 0
fi
${bamboo_capability_system_builder_mvn3_Maven_3}/bin/mvn \
echo "gitTag=${newVersion}" > git.tag
mvn --no-transfer-progress \
-f ${bamboo_build_working_directory}/$SERVICE_NAME-v1/pom.xml \
${bamboo_maven_add_param} \
versions:set \
-DnewVersion=${newVersion}
mvn --no-transfer-progress \
-f ${bamboo_build_working_directory}/$SERVICE_NAME-image-v1/pom.xml \
${bamboo_maven_add_param} \
versions:set \
-DnewVersion=${newVersion}
mvn -f ${bamboo_build_working_directory}/$SERVICE_NAME-v1/pom.xml \
--no-transfer-progress \
clean deploy \
${bamboo_maven_add_param} \
-e \
-DdeployAtEnd=true \
-Dmaven.wagon.http.ssl.insecure=true \
-Dmaven.wagon.http.ssl.allowall=true \
-Dmaven.wagon.http.ssl.ignore.validity.dates=true \
-DaltDeploymentRepository=iqser_release::default::https://nexus.iqser.com/repository/red-platform-releases
mvn --no-transfer-progress \
-f ${bamboo_build_working_directory}/$SERVICE_NAME-image-v1/pom.xml \
package
${bamboo_capability_system_builder_mvn3_Maven_3}/bin/mvn \
--no-transfer-progress \
mvn --no-transfer-progress \
-f ${bamboo_build_working_directory}/$SERVICE_NAME-image-v1/pom.xml \
docker:push
if [[ "${bamboo_version_tag}" = "dev" ]]
then
echo "gitTag=${bamboo_planRepository_1_branch}_${bamboo_buildNumber}" > git.tag
else
echo "gitTag=${bamboo_version_tag}" > git.tag
fi
@@ -3,46 +3,42 @@ set -e
SERVICE_NAME=$1
${bamboo_capability_system_builder_mvn3_Maven_3}/bin/mvn \
-f ${bamboo_build_working_directory}/$SERVICE_NAME-v1/pom.xml \
echo "build jar binaries"
mvn -f ${bamboo_build_working_directory}/$SERVICE_NAME-v1/pom.xml \
--no-transfer-progress \
clean install \
-Djava.security.egd=file:/dev/./urandomelse
echo "dependency-check:aggregate"
${bamboo_capability_system_builder_mvn3_Maven_3}/bin/mvn \
--no-transfer-progress \
mvn --no-transfer-progress \
-f ${bamboo_build_working_directory}/$SERVICE_NAME-v1/pom.xml \
org.owasp:dependency-check-maven:aggregate
if [[ -z "${bamboo_repository_pr_key}" ]]
then
echo "Sonar Scan for branch: ${bamboo_planRepository_1_branch}"
${bamboo_capability_system_builder_mvn3_Maven_3}/bin/mvn \
--no-transfer-progress \
-f ${bamboo_build_working_directory}/$SERVICE_NAME-v1/pom.xml \
sonar:sonar \
-Dsonar.projectKey=RED_$SERVICE_NAME \
-Dsonar.host.url=https://sonarqube.iqser.com \
-Dsonar.login=${bamboo_sonarqube_api_token_secret} \
-Dsonar.branch.name=${bamboo_planRepository_1_branch} \
-Dsonar.dependencyCheck.jsonReportPath=target/dependency-check-report.json \
-Dsonar.dependencyCheck.xmlReportPath=target/dependency-check-report.xml \
-Dsonar.dependencyCheck.htmlReportPath=target/dependency-check-report.html
mvn --no-transfer-progress \
-f ${bamboo_build_working_directory}/$SERVICE_NAME-v1/pom.xml \
sonar:sonar \
-Dsonar.projectKey=RED_$SERVICE_NAME \
-Dsonar.host.url=https://sonarqube.iqser.com \
-Dsonar.login=${bamboo_sonarqube_api_token_secret} \
-Dsonar.branch.name=${bamboo_planRepository_1_branch} \
-Dsonar.dependencyCheck.jsonReportPath=target/dependency-check-report.json \
-Dsonar.dependencyCheck.xmlReportPath=target/dependency-check-report.xml \
-Dsonar.dependencyCheck.htmlReportPath=target/dependency-check-report.html
else
echo "Sonar Scan for PR with key1: ${bamboo_repository_pr_key}"
${bamboo_capability_system_builder_mvn3_Maven_3}/bin/mvn \
--no-transfer-progress \
-f ${bamboo_build_working_directory}/$SERVICE_NAME-v1/pom.xml \
sonar:sonar \
-Dsonar.projectKey=RED_$SERVICE_NAME \
-Dsonar.host.url=https://sonarqube.iqser.com \
-Dsonar.login=${bamboo_sonarqube_api_token_secret} \
-Dsonar.pullrequest.key=${bamboo_repository_pr_key} \
-Dsonar.pullrequest.branch=${bamboo_repository_pr_sourceBranch} \
-Dsonar.pullrequest.base=${bamboo_repository_pr_targetBranch} \
-Dsonar.dependencyCheck.jsonReportPath=target/dependency-check-report.json \
-Dsonar.dependencyCheck.xmlReportPath=target/dependency-check-report.xml \
-Dsonar.dependencyCheck.htmlReportPath=target/dependency-check-report.html
fi
mvn --no-transfer-progress \
-f ${bamboo_build_working_directory}/$SERVICE_NAME-v1/pom.xml \
sonar:sonar \
-Dsonar.projectKey=RED_$SERVICE_NAME \
-Dsonar.host.url=https://sonarqube.iqser.com \
-Dsonar.login=${bamboo_sonarqube_api_token_secret} \
-Dsonar.pullrequest.key=${bamboo_repository_pr_key} \
-Dsonar.pullrequest.branch=${bamboo_repository_pr_sourceBranch} \
-Dsonar.pullrequest.base=${bamboo_repository_pr_targetBranch} \
-Dsonar.dependencyCheck.jsonReportPath=target/dependency-check-report.json \
-Dsonar.dependencyCheck.xmlReportPath=target/dependency-check-report.xml \
-Dsonar.dependencyCheck.htmlReportPath=target/dependency-check-report.html
fi
+2 -2
View File
@@ -7,7 +7,7 @@
<artifactId>redaction-service</artifactId>
<groupId>com.iqser.red.service</groupId>
<version>1.0-SNAPSHOT</version>
<version>3.0-SNAPSHOT</version>
<packaging>pom</packaging>
@@ -18,4 +18,4 @@
<module>redaction-service-image-v1</module>
</modules>
</project>
</project>
+3 -3
View File
@@ -5,7 +5,7 @@
<parent>
<groupId>com.iqser.red</groupId>
<artifactId>platform-docker-dependency</artifactId>
<version>1.1.0</version>
<version>1.2.0</version>
<relativePath />
</parent>
<modelVersion>4.0.0</modelVersion>
@@ -42,7 +42,7 @@
<artifactId>docker-maven-plugin</artifactId>
</plugin>
</plugins>
<pluginManagement>
<plugins>
<plugin>
@@ -95,4 +95,4 @@
</plugins>
</pluginManagement>
</build>
</project>
</project>
@@ -1,4 +1,4 @@
FROM red/base-image:1.0.0
FROM red/redaction-service-base-v1:1.0.0
ARG PLATFORM_JAR
@@ -7,12 +7,3 @@ ENV PLATFORM_JAR ${PLATFORM_JAR}
ENV USES_ELASTICSEARCH false
COPY ["${PLATFORM_JAR}", "/"]
RUN apt-get update \
&& DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends \
wget cabextract xfonts-utils fonts-liberation \
&& rm -rf /var/lib/apt/lists/*
RUN curl http://ftp.debian.org/debian/pool/contrib/m/msttcorefonts/ttf-mscorefonts-installer_3.8_all.deb -o /tmp/ttf-mscorefonts-installer_3.8_all.deb \
&& dpkg -i /tmp/ttf-mscorefonts-installer_3.8_all.deb \
&& rm /tmp/ttf-mscorefonts-installer_3.8_all.deb \
+4 -4
View File
@@ -5,7 +5,7 @@
<parent>
<artifactId>platform-dependency</artifactId>
<groupId>com.iqser.red</groupId>
<version>1.6.0</version>
<version>1.10.0</version>
<relativePath />
</parent>
<modelVersion>4.0.0</modelVersion>
@@ -32,7 +32,7 @@
<dependency>
<groupId>com.iqser.red</groupId>
<artifactId>platform-commons-dependency</artifactId>
<version>1.7.0</version>
<version>1.11.0</version>
<scope>import</scope>
<type>pom</type>
</dependency>
@@ -59,7 +59,7 @@
<groupId>org.sonarsource.scanner.maven</groupId>
<artifactId>sonar-maven-plugin</artifactId>
<version>3.9.0.2155</version>
</plugin>
</plugin>
<plugin>
<groupId>org.owasp</groupId>
<artifactId>dependency-check-maven</artifactId>
@@ -92,7 +92,7 @@
<plugin>
<groupId>org.jacoco</groupId>
<artifactId>jacoco-maven-plugin</artifactId>
<version>0.8.7</version>
<version>0.8.8</version>
<executions>
<execution>
<id>prepare-agent</id>
@@ -12,7 +12,7 @@
<artifactId>redaction-service-api-v1</artifactId>
<properties>
<persistence-service.version>0.151.0</persistence-service.version>
<persistence-service.version>1.166.0</persistence-service.version>
</properties>
<dependencies>
@@ -25,6 +25,12 @@
<groupId>com.iqser.red.service</groupId>
<artifactId>persistence-service-api-v1</artifactId>
<version>${persistence-service.version}</version>
<exclusions>
<exclusion>
<groupId>com.iqser.red.service</groupId>
<artifactId>redaction-service-api-v1</artifactId>
</exclusion>
</exclusions>
</dependency>
</dependencies>
</project>
@@ -1,17 +1,17 @@
package com.iqser.red.service.redaction.v1.model;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactions;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
import java.time.OffsetDateTime;
import java.util.ArrayList;
import java.util.HashSet;
import java.util.List;
import java.util.Set;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactions;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@Builder
@@ -0,0 +1,21 @@
package com.iqser.red.service.redaction.v1.model;
import java.util.ArrayList;
import java.util.List;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@Builder
@NoArgsConstructor
@AllArgsConstructor
public class ImportedRedaction {
private String id;
@Builder.Default
private List<Rectangle> positions = new ArrayList<>();
}
@@ -0,0 +1,20 @@
package com.iqser.red.service.redaction.v1.model;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@Builder
@NoArgsConstructor
@AllArgsConstructor
public class ImportedRedactions {
@Builder.Default
private Map<Integer, List<ImportedRedaction>> importedRedactions = new HashMap<>();
}
@@ -0,0 +1,50 @@
package com.iqser.red.service.redaction.v1.model;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.AnnotationStatus;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.BaseAnnotation;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
import java.time.OffsetDateTime;
import java.util.HashMap;
import java.util.Map;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class ManualChange {
private AnnotationStatus annotationStatus;
private ManualRedactionType manualRedactionType;
private OffsetDateTime processedDate;
private OffsetDateTime requestedDate;
private String userId;
private Map<String, Object> propertyChanges = new HashMap<>();
public boolean isProcessed() {
return processedDate != null;
}
public static ManualChange from(BaseAnnotation baseAnnotation) {
ManualChange manualChange = new ManualChange();
manualChange.annotationStatus = baseAnnotation.getStatus();
manualChange.processedDate = baseAnnotation.getProcessedDate();
manualChange.requestedDate = baseAnnotation.getRequestDate();
manualChange.userId = baseAnnotation.getUser();
return manualChange;
}
public ManualChange withManualRedactionType(ManualRedactionType manualRedactionType) {
this.manualRedactionType = manualRedactionType;
return this;
}
public ManualChange withChange(String property, Object value) {
this.propertyChanges.put(property, value);
return this;
}
}
@@ -1,5 +1,13 @@
package com.iqser.red.service.redaction.v1.model;
public enum ManualRedactionType {
ADD, REMOVE, FORCE_REDACT, RECATEGORIZE, LEGAL_BASIS_CHANGE, RESIZE
ADD_LOCALLY,
ADD_TO_DICTIONARY,
REMOVE_LOCALLY,
REMOVE_FROM_DICTIONARY,
FORCE_REDACT,
FORCE_HINT,
RECATEGORIZE,
LEGAL_BASIS_CHANGE,
RESIZE
}
@@ -2,6 +2,6 @@ package com.iqser.red.service.redaction.v1.model;
public enum MessageType {
FULL_ANALYSE, REANALYSE, SURROUNDING_TEXT
ANALYSE, REANALYSE, STRUCTURE_ANALYSE, SURROUNDING_TEXT
}
@@ -2,16 +2,9 @@ package com.iqser.red.service.redaction.v1.model;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.AnnotationStatus;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.Comment;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.EqualsAndHashCode;
import lombok.NoArgsConstructor;
import lombok.*;
import java.util.ArrayList;
import java.util.HashSet;
import java.util.List;
import java.util.Set;
import java.util.*;
@Data
@@ -28,15 +21,13 @@ public class RedactionLogEntry {
private int matchedRule;
private boolean rectangle;
private String legalBasis;
private boolean imported;
private boolean redacted;
private boolean isHint;
private boolean isRecommendation;
private boolean hasBeenResized;
private boolean hasBeenRecategorized;
private boolean hasLegalBasisChanged;
private boolean hasBeenForced;
private boolean hasBeenRemovedByManualOverride;
private boolean isFalsePositive;
private String section;
private float[] color;
@@ -44,11 +35,7 @@ public class RedactionLogEntry {
@Builder.Default
private List<Rectangle> positions = new ArrayList<>();
private int sectionNumber;
private boolean manual;
private AnnotationStatus status;
private ManualRedactionType manualRedactionType;
private String manualRedactionUserId;
private boolean isDictionaryEntry;
private String textBefore;
private String textAfter;
@@ -62,21 +49,44 @@ public class RedactionLogEntry {
private boolean isImage;
private boolean imageHasTransparency;
private boolean isDictionaryEntry;
private boolean isDossierDictionaryEntry;
private boolean excluded;
private String recategorizationType;
private String legalBasisChangeValue;
private String sourceId;
@EqualsAndHashCode.Exclude
@Builder.Default
private List<Change> changes = new ArrayList<>();
private Set<Engine> engines= new HashSet<>();
@EqualsAndHashCode.Exclude
@Builder.Default
private List<ManualChange> manualChanges = new ArrayList<>();
private Set<Engine> engines = new HashSet<>();
private Set<String> reference = new HashSet<>();
@Builder.Default
private Set<String> importedRedactionIntersections = new HashSet<>();
public boolean lastChangeIsRemoved() {
return last(changes).map(c -> c.getType() == ChangeType.REMOVED).orElse(false);
}
public boolean isLocalManualRedaction() {
return manualChanges.stream().anyMatch(mc -> mc.getManualRedactionType() == ManualRedactionType.ADD_LOCALLY &&
mc.getAnnotationStatus() == AnnotationStatus.APPROVED);
}
public boolean isManuallyRemoved() {
return manualChanges.stream().anyMatch(mc -> mc.getManualRedactionType() == ManualRedactionType.REMOVE_LOCALLY &&
mc.getAnnotationStatus() == AnnotationStatus.APPROVED);
}
private <T> Optional<T> last(List<T> list) {
return list.isEmpty() ? Optional.empty() : Optional.of(list.get(list.size() - 1));
}
}
@@ -1,10 +1,15 @@
package com.iqser.red.service.redaction.v1.model;
import java.util.HashSet;
import java.util.List;
import java.util.Set;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactions;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.configuration.Colors;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.type.Type;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
@@ -22,4 +27,9 @@ public class RedactionRequest {
private ManualRedactions manualRedactions;
@Builder.Default
private Set<Integer> excludedPages = new HashSet<>();
private Colors colors;
private List<Type> types;
private boolean includeFalsePositives;
}
@@ -11,10 +11,6 @@ import org.springframework.web.bind.annotation.RequestParam;
public interface RedactionResource {
@PostMapping(value = "/annotate", produces = MediaType.APPLICATION_JSON_VALUE, consumes = MediaType.APPLICATION_JSON_VALUE)
AnnotateResponse annotate(@RequestBody AnnotateRequest annotateRequest);
@PostMapping(value = "/debug/classifications", produces = MediaType.APPLICATION_JSON_VALUE, consumes = MediaType.APPLICATION_JSON_VALUE)
RedactionResult classify(@RequestBody RedactionRequest redactionRequest);
@@ -24,6 +24,19 @@
<groupId>com.iqser.red.commons</groupId>
<artifactId>storage-commons</artifactId>
</dependency>
<dependency>
<groupId>org.ahocorasick</groupId>
<artifactId>ahocorasick</artifactId>
<version>0.6.3</version>
</dependency>
<dependency>
<groupId>org.openjdk.jol</groupId>
<artifactId>jol-core</artifactId>
<version>0.10</version>
</dependency>
<dependency>
<groupId>com.iqser.red.service</groupId>
<artifactId>redaction-service-api-v1</artifactId>
@@ -52,7 +52,7 @@ public class ClassificationService {
List<Float> headlineFontSizes) {
if (document.getFontSizeCounter().getMostPopular() == null) {
// TODO Figure out why this happens.
textBlock.setClassification("Other");
return;
}
if (PositionUtils.isOverBodyTextFrame(bodyTextFrame, textBlock, page.isRotated()) && (document.getFontSizeCounter()
@@ -16,6 +16,6 @@ import lombok.NoArgsConstructor;
public class NerEntities {
@Builder.Default
private Map<Integer, List<EntityRecogintionEntity>> result = new HashMap<>();
private Map<Integer, List<EntityRecogintionEntity>> data = new HashMap<>();
}
@@ -1,42 +1,29 @@
package com.iqser.red.service.redaction.v1.server.controller;
import java.io.ByteArrayOutputStream;
import java.io.IOException;
import java.util.stream.Collectors;
import org.apache.pdfbox.io.MemoryUsageSetting;
import org.apache.pdfbox.pdmodel.PDDocument;
import org.springframework.web.bind.annotation.PathVariable;
import org.springframework.web.bind.annotation.RequestBody;
import org.springframework.web.bind.annotation.RestController;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactions;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.dossier.file.FileType;
import com.iqser.red.service.redaction.v1.model.AnnotateRequest;
import com.iqser.red.service.redaction.v1.model.AnnotateResponse;
import com.iqser.red.service.redaction.v1.model.RedactionLog;
import com.iqser.red.service.redaction.v1.model.RedactionRequest;
import com.iqser.red.service.redaction.v1.model.RedactionResult;
import com.iqser.red.service.redaction.v1.model.SectionArea;
import com.iqser.red.service.redaction.v1.model.SectionGrid;
import com.iqser.red.service.redaction.v1.model.*;
import com.iqser.red.service.redaction.v1.resources.RedactionResource;
import com.iqser.red.service.redaction.v1.server.classification.model.Document;
import com.iqser.red.service.redaction.v1.server.classification.model.Page;
import com.iqser.red.service.redaction.v1.server.exception.NotFoundException;
import com.iqser.red.service.redaction.v1.server.exception.RedactionException;
import com.iqser.red.service.redaction.v1.server.redaction.service.AnnotationService;
import com.iqser.red.service.redaction.v1.server.redaction.service.DictionaryService;
import com.iqser.red.service.redaction.v1.server.redaction.service.DroolsExecutionService;
import com.iqser.red.service.redaction.v1.server.redaction.service.ManualRedactionSurroundingTextService;
import com.iqser.red.service.redaction.v1.server.redaction.service.RedactionLogMergeService;
import com.iqser.red.service.redaction.v1.server.redaction.service.*;
import com.iqser.red.service.redaction.v1.server.segmentation.PdfSegmentationService;
import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
import com.iqser.red.service.redaction.v1.server.visualization.service.PdfVisualisationService;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
import org.apache.pdfbox.pdmodel.PDDocument;
import org.springframework.web.bind.annotation.PathVariable;
import org.springframework.web.bind.annotation.RequestBody;
import org.springframework.web.bind.annotation.RestController;
import java.io.ByteArrayOutputStream;
import java.io.IOException;
import java.util.stream.Collectors;
@Slf4j
@RestController
@@ -45,53 +32,19 @@ public class RedactionController implements RedactionResource {
private final PdfVisualisationService pdfVisualisationService;
private final DroolsExecutionService droolsExecutionService;
private final DictionaryService dictionaryService;
private final AnnotationService annotationService;
private final PdfSegmentationService pdfSegmentationService;
private final RedactionStorageService redactionStorageService;
private final RedactionLogMergeService redactionLogMergeService;
private final ManualRedactionSurroundingTextService manualRedactionSurroundingTextService;
public AnnotateResponse annotate(@RequestBody AnnotateRequest annotateRequest) {
var storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(annotateRequest
.getDossierId(), annotateRequest.getFileId(), FileType.ORIGIN));
var mergedRedactionLog = getRedactionLog(RedactionRequest.builder()
.fileId(annotateRequest.getFileId())
.manualRedactions(annotateRequest.getManualRedactions())
.dossierId(annotateRequest.getDossierId())
.dossierTemplateId(annotateRequest.getDossierTemplateId())
.build());
var sectionsGrid = redactionStorageService.getSectionGrid(annotateRequest.getDossierId(), annotateRequest.getFileId());
try (PDDocument pdDocument = PDDocument.load(storedObjectStream, MemoryUsageSetting.setupTempFileOnly())) {
pdDocument.setAllSecurityToBeRemoved(true);
dictionaryService.updateDictionary(annotateRequest.getDossierTemplateId(), annotateRequest.getDossierId());
annotationService.annotate(pdDocument, mergedRedactionLog, sectionsGrid);
try (ByteArrayOutputStream byteArrayOutputStream = new ByteArrayOutputStream()) {
pdDocument.save(byteArrayOutputStream);
return AnnotateResponse.builder().document(byteArrayOutputStream.toByteArray()).build();
}
} catch (Exception e) {
throw new RedactionException(e);
}
}
@Override
public RedactionResult classify(@RequestBody RedactionRequest redactionRequest) {
var storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(redactionRequest
.getDossierId(), redactionRequest.getFileId(), FileType.ORIGIN));
var storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(redactionRequest.getDossierId(), redactionRequest.getFileId(), FileType.ORIGIN));
try {
Document classifiedDoc = pdfSegmentationService.parseDocument(storedObjectStream, null);
storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(redactionRequest
.getDossierId(), redactionRequest.getFileId(), FileType.ORIGIN));
storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(redactionRequest.getDossierId(), redactionRequest.getFileId(), FileType.ORIGIN));
try (PDDocument pdDocument = PDDocument.load(storedObjectStream)) {
pdDocument.setAllSecurityToBeRemoved(true);
@@ -113,13 +66,11 @@ public class RedactionController implements RedactionResource {
@Override
public RedactionResult sections(@RequestBody RedactionRequest redactionRequest) {
var storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(redactionRequest
.getDossierId(), redactionRequest.getFileId(), FileType.ORIGIN));
var storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(redactionRequest.getDossierId(), redactionRequest.getFileId(), FileType.ORIGIN));
try {
Document classifiedDoc = pdfSegmentationService.parseDocument(storedObjectStream, null);
storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(redactionRequest
.getDossierId(), redactionRequest.getFileId(), FileType.ORIGIN));
storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(redactionRequest.getDossierId(), redactionRequest.getFileId(), FileType.ORIGIN));
try (PDDocument pdDocument = PDDocument.load(storedObjectStream)) {
pdDocument.setAllSecurityToBeRemoved(true);
@@ -143,8 +94,7 @@ public class RedactionController implements RedactionResource {
Document classifiedDoc;
try {
var storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(redactionRequest
.getDossierId(), redactionRequest.getFileId(), FileType.ORIGIN));
var storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(redactionRequest.getDossierId(), redactionRequest.getFileId(), FileType.ORIGIN));
classifiedDoc = pdfSegmentationService.parseDocument(storedObjectStream, null);
} catch (Exception e) {
throw new RedactionException(e);
@@ -175,44 +125,8 @@ public class RedactionController implements RedactionResource {
@Override
public RedactionLog getRedactionLog(RedactionRequest redactionRequest) {
log.info("Requested preview for: {}", redactionRequest);
dictionaryService.updateDictionary(redactionRequest.getDossierTemplateId(), redactionRequest.getDossierId());
var redactionLog = redactionStorageService.getRedactionLog(redactionRequest.getDossierId(), redactionRequest.getFileId());
if (redactionLog == null) {
throw new NotFoundException("RedactionLog not present");
}
log.info("Loaded redaction log with computationalVersion: {}", redactionLog.getAnalysisVersion());
SectionGrid sectionGrid = redactionStorageService.getSectionGrid(redactionRequest.getDossierId(), redactionRequest
.getFileId());
if (sectionGrid.getSections().isEmpty()) {
log.info("SectionGrid does not have headlines set. Computing headlines now!");
var text = redactionStorageService.getText(redactionRequest.getDossierId(), redactionRequest.getFileId());
// enhance section grid with headline data
for (var sectionText : text.getSectionTexts()) {
sectionGrid.getSections()
.add(new SectionGrid.SectionGridSection(sectionText.getSectionNumber(), sectionText.getHeadline(), sectionText
.getSectionAreas()
.stream()
.map(SectionArea::getPage)
.collect(Collectors.toSet()), sectionText.getSectionAreas()));
}
redactionStorageService.storeObject(redactionRequest.getDossierId(), redactionRequest.getFileId(), FileType.SECTION_GRID, sectionGrid);
}
log.info("Loaded redaction log with computationalVersion: {}", redactionLog.getAnalysisVersion());
if (redactionLog.getAnalysisVersion() == 0) {
// old redaction logs are returned directly
return redactionLog;
} else {
return redactionLogMergeService.mergeRedactionLogData(redactionLog, sectionGrid, redactionRequest.getDossierTemplateId(), redactionRequest
.getManualRedactions(), redactionRequest.getExcludedPages());
}
return redactionLogMergeService.provideRedactionLog(redactionRequest);
}
@@ -234,11 +148,9 @@ public class RedactionController implements RedactionResource {
@PathVariable("fileId") String fileId,
@RequestBody ManualRedactions manualRedactions) {
long start = System.currentTimeMillis();
var result = manualRedactionSurroundingTextService.addSurroundingText(dossierId, fileId, manualRedactions);
log.info("add surrounding text for manual redaction in dossierId {} and fileId {} took: {}", dossierId, fileId, System
.currentTimeMillis() - start);
return result;
log.info("Added surrounding text for manual redaction in dossierId {} and fileId {} took: {}", dossierId, fileId, result.getDuration());
return result.getManualRedactions();
}
}
@@ -240,7 +240,7 @@ public class TextPositionSequence implements CharSequence {
@JsonIgnore
public Rectangle getRectangle() {
log.debug("Page: '{}', Word: '{}', Rotation: '{}'", page, toString(), textPositions.get(0).getRotation());
log.debug("Page: '{}', Word: '{}', Rotation: '{}', textRotation {}", page, toString(), textPositions.get(0).getRotation(), textPositions.get(0).getDir());
float height = getTextHeight();
@@ -291,6 +291,14 @@ public class TextPositionSequence implements CharSequence {
posXInit = textPositions.get(0).getYDirAdj() + 2;
posXEnd = textPositions.get(textPositions.size() - 1).getYDirAdj() - height;
} else if (textPositions.get(0).getRotation() == 180 && textPositions.get(0).getDir() == 180f) {
posXInit = textPositions.get(0).getPageWidth() - getX1() +1;
posXEnd = textPositions.get(0).getPageWidth() - getX2() + textPositions.get(0).getWidthDirAdj() - textPositions.get(textPositions.size() - 1)
.getWidthDirAdj() - 3;
posYInit = textPositions.get(0).getYDirAdj() - height + 2;
posYEnd = textPositions.get(textPositions.size() - 1)
.getYDirAdj() - height + 2;
} else {
posXEnd = textPositions.get(textPositions.size() - 1)
.getXDirAdj() + textPositions.get(textPositions.size() - 1).getWidthDirAdj() + 1;
@@ -0,0 +1,25 @@
package com.iqser.red.service.redaction.v1.server.queue;
import static com.iqser.red.service.redaction.v1.server.queue.MessagingConfiguration.REDACTION_QUEUE;
import org.springframework.amqp.rabbit.annotation.RabbitHandler;
import org.springframework.amqp.rabbit.annotation.RabbitListener;
import com.fasterxml.jackson.core.JsonProcessingException;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
@Slf4j
@RequiredArgsConstructor
public class MessageReceiver {
private final RedactionMessageReceiver redactionMessageReceiver;
@RabbitHandler
@RabbitListener(queues = REDACTION_QUEUE)
public void receiveAnalyzeRequest(String in) throws JsonProcessingException {
redactionMessageReceiver.receiveAnalyzeRequest(in, false);
}
}
@@ -1,8 +1,10 @@
package com.iqser.red.service.redaction.v1.server.queue;
import lombok.RequiredArgsConstructor;
import org.springframework.amqp.core.Queue;
import org.springframework.amqp.core.QueueBuilder;
import org.springframework.boot.autoconfigure.condition.ConditionalOnProperty;
import org.springframework.context.annotation.Bean;
import org.springframework.context.annotation.Configuration;
@@ -10,11 +12,24 @@ import org.springframework.context.annotation.Configuration;
@RequiredArgsConstructor
public class MessagingConfiguration {
public static final String REDACTION_QUEUE = "redactionQueue";
public static final String REDACTION_DQL = "redactionDQL";
public static final String REDACTION_PRIORITY_QUEUE = "redactionPriorityQueue";
@Bean
@ConditionalOnProperty(prefix = "redaction-service", name = "priorityMode", havingValue = "false")
public MessageReceiver messageReceiver(RedactionMessageReceiver redactionMessageReceiver){
return new MessageReceiver(redactionMessageReceiver);
}
@Bean
@ConditionalOnProperty(prefix = "redaction-service", name = "priorityMode", havingValue = "true")
public PriorityMessageReceiver priorityMessageReceiver(RedactionMessageReceiver redactionMessageReceiver){
return new PriorityMessageReceiver(redactionMessageReceiver);
}
@Bean
public Queue redactionQueue() {
@@ -27,9 +42,21 @@ public class MessagingConfiguration {
}
@Bean
public Queue redactionPriorityQueue() {
return QueueBuilder.durable(REDACTION_PRIORITY_QUEUE)
.withArgument("x-dead-letter-exchange", "")
.withArgument("x-dead-letter-routing-key", REDACTION_DQL)
.maxPriority(2)
.build();
}
@Bean
public Queue redactionDeadLetterQueue() {
return QueueBuilder.durable(REDACTION_DQL).build();
}
}
@@ -0,0 +1,27 @@
package com.iqser.red.service.redaction.v1.server.queue;
import static com.iqser.red.service.redaction.v1.server.queue.MessagingConfiguration.REDACTION_PRIORITY_QUEUE;
import org.springframework.amqp.rabbit.annotation.RabbitHandler;
import org.springframework.amqp.rabbit.annotation.RabbitListener;
import com.fasterxml.jackson.core.JsonProcessingException;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
@Slf4j
@RequiredArgsConstructor
public class PriorityMessageReceiver {
private final RedactionMessageReceiver redactionMessageReceiver;
@RabbitHandler
@RabbitListener(queues = REDACTION_PRIORITY_QUEUE)
public void receiveAnalyzeRequest(String in) throws JsonProcessingException {
redactionMessageReceiver.receiveAnalyzeRequest(in, true);
}
}
@@ -8,17 +8,13 @@ import com.iqser.red.service.redaction.v1.model.StructureAnalyzeRequest;
import com.iqser.red.service.redaction.v1.server.client.FileStatusProcessingUpdateClient;
import com.iqser.red.service.redaction.v1.server.redaction.service.AnalyzeService;
import com.iqser.red.service.redaction.v1.server.redaction.service.ManualRedactionSurroundingTextService;
import com.iqser.red.service.redaction.v1.server.redaction.service.NerAnalyserService;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
import org.springframework.amqp.rabbit.annotation.RabbitHandler;
import org.springframework.amqp.rabbit.annotation.RabbitListener;
import org.springframework.stereotype.Service;
import static com.iqser.red.service.redaction.v1.server.queue.MessagingConfiguration.REDACTION_DQL;
import static com.iqser.red.service.redaction.v1.server.queue.MessagingConfiguration.REDACTION_QUEUE;
@Slf4j
@Service
@@ -28,48 +24,46 @@ public class RedactionMessageReceiver {
private final ObjectMapper objectMapper;
private final AnalyzeService analyzeService;
private final FileStatusProcessingUpdateClient fileStatusProcessingUpdateClient;
private final NerAnalyserService nerAnalyserService;
private final ManualRedactionSurroundingTextService manualRedactionSurroundingTextService;
@RabbitHandler
@RabbitListener(queues = REDACTION_QUEUE)
public void receiveAnalyzeRequest(String in) throws JsonProcessingException {
public void receiveAnalyzeRequest(String in, boolean priority) throws JsonProcessingException {
var analyzeRequest = objectMapper.readValue(in, AnalyzeRequest.class);
log.info("Processing analyze request for file: {}", analyzeRequest.getFileId());
log.info("Processing priority: {} analyze request for file: {}", priority, analyzeRequest.getFileId());
AnalyzeResult result = null;
switch (analyzeRequest.getMessageType()){
try {
switch (analyzeRequest.getMessageType()) {
case REANALYSE:
result = analyzeService.reanalyze(analyzeRequest);
log.info("Successfully reanalyzed dossier {} file {} took: {}", analyzeRequest.getDossierId(), analyzeRequest.getFileId(), result.getDuration());
break;
case FULL_ANALYSE:
// TODO Seperate stucture analysis by other queue
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(analyzeRequest.getDossierId(), analyzeRequest.getFileId()));
case REANALYSE:
result = analyzeService.reanalyze(analyzeRequest);
log.info("Successfully reanalyzed dossier {} file {} took: {}", analyzeRequest.getDossierId(), analyzeRequest.getFileId(), result.getDuration());
break;
// TODO NerEntities should be computed and stored in entity-recognition-service, should be triggered by a seperate queue after structure analysis
nerAnalyserService.computeNerEntities(analyzeRequest.getDossierId(), analyzeRequest.getFileId());
case STRUCTURE_ANALYSE:
result = analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(analyzeRequest.getDossierId(), analyzeRequest.getFileId()));
log.info("Successfully analyzed structure dossier {} file {} took: {}", analyzeRequest.getDossierId(), analyzeRequest.getFileId(), result.getDuration());
break;
result = analyzeService.analyze(analyzeRequest);
log.info("Successfully analyzed dossier {} file {} took: {}", analyzeRequest.getDossierId(), analyzeRequest.getFileId(), result
.getDuration());
case ANALYSE:
result = analyzeService.analyze(analyzeRequest);
log.info("Successfully analyzed dossier {} file {} took: {}", analyzeRequest.getDossierId(), analyzeRequest.getFileId(), result.getDuration());
break;
break;
case SURROUNDING_TEXT:
var manualRedactions = manualRedactionSurroundingTextService.addSurroundingText(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), analyzeRequest.getManualRedactions());
result = AnalyzeResult.builder()
.dossierId(analyzeRequest.getDossierId())
.fileId(analyzeRequest.getFileId())
.manualRedactions(manualRedactions)
.build();
break;
case SURROUNDING_TEXT:
result = manualRedactionSurroundingTextService.addSurroundingText(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), analyzeRequest.getManualRedactions());
log.info("Successfully added surrounding text for manual redaction in dossierId {} and fileId {} took: {}", analyzeRequest.getDossierId(), analyzeRequest.getFileId(), result.getDuration());
break;
}
result.setMessageType(analyzeRequest.getMessageType());
fileStatusProcessingUpdateClient.analysisSuccessful(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), result);
} catch (Exception e) {
log.warn("Failed to process analyze request: {}", analyzeRequest, e);
fileStatusProcessingUpdateClient.analysisFailed(analyzeRequest.getDossierId(), analyzeRequest.getFileId());
}
result.setMessageType(analyzeRequest.getMessageType());
fileStatusProcessingUpdateClient.analysisSuccessful(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), result);
}
@@ -1,22 +1,16 @@
package com.iqser.red.service.redaction.v1.server.redaction.model;
import static java.util.stream.Collectors.toSet;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.type.DictionaryEntry;
import lombok.Data;
import lombok.Getter;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.Set;
import lombok.Data;
import lombok.Getter;
@Data
public class Dictionary {
public static final String RECOMMENDATION_PREFIX = "recommendation_";
@Getter
private List<DictionaryModel> dictionaryModels;
private Map<String, DictionaryModel> localAccessMap = new HashMap<>();
@@ -26,6 +20,7 @@ public class Dictionary {
public Dictionary(List<DictionaryModel> dictionaryModels, DictionaryVersion version) {
this.dictionaryModels = dictionaryModels;
this.dictionaryModels.forEach(dm -> localAccessMap.put(dm.getType(), dm));
this.version = version;
@@ -33,6 +28,7 @@ public class Dictionary {
public int getDictionaryRank(String type) {
if (!localAccessMap.containsKey(type)) {
return 0;
}
@@ -40,16 +36,6 @@ public class Dictionary {
}
public boolean isRecommendation(String type) {
DictionaryModel model = localAccessMap.get(type);
if (model != null) {
return model.isRecommendation();
}
return false;
}
public boolean hasLocalEntries() {
return dictionaryModels.stream().anyMatch(dm -> !dm.getLocalEntries().isEmpty());
@@ -62,17 +48,9 @@ public class Dictionary {
}
public boolean containsValue(String type, String value) {
public DictionaryModel getType(String type) {
return localAccessMap.containsKey(type) && localAccessMap.get(type)
.getValues(false)
.contains(value) || localAccessMap.containsKey(type) && localAccessMap.get(type)
.getValues(true)
.contains(value) || localAccessMap.containsKey(RECOMMENDATION_PREFIX + type) && localAccessMap.get(RECOMMENDATION_PREFIX + type)
.getValues(false)
.contains(value) || localAccessMap.containsKey(RECOMMENDATION_PREFIX + type) && localAccessMap.get(RECOMMENDATION_PREFIX + type)
.getValues(true)
.contains(value);
return localAccessMap.get(type);
}
@@ -85,6 +63,7 @@ public class Dictionary {
return false;
}
public boolean isCaseInsensitiveDictionary(String type) {
DictionaryModel dictionaryModel = localAccessMap.get(type);
@@ -0,0 +1,26 @@
package com.iqser.red.service.redaction.v1.server.redaction.model;
import java.util.HashSet;
import java.util.Set;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.type.DictionaryEntry;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@Builder
@NoArgsConstructor
@AllArgsConstructor
public class DictionaryEntries {
@Builder.Default
Set<DictionaryEntry> entries = new HashSet<>();
@Builder.Default
Set<DictionaryEntry> falsePositives = new HashSet<>();
@Builder.Default
Set<DictionaryEntry> falseRecommendations = new HashSet<>();
}
@@ -2,10 +2,12 @@ package com.iqser.red.service.redaction.v1.server.redaction.model;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.type.DictionaryEntry;
import com.iqser.red.service.redaction.v1.server.redaction.utils.SearchImplementation;
import lombok.AllArgsConstructor;
import lombok.Data;
import java.io.Serializable;
import java.util.HashSet;
import java.util.Set;
import java.util.stream.Collectors;
@@ -14,19 +16,76 @@ import java.util.stream.Collectors;
@AllArgsConstructor
public class DictionaryModel implements Serializable {
private String type;
private int rank;
private float[] color;
private boolean caseInsensitive;
private boolean hint;
private boolean recommendation;
private Set<DictionaryEntry> entries;
private Set<String> localEntries;
private boolean isDossierDictionary;
private final String type;
private final int rank;
private final float[] color;
private final boolean caseInsensitive;
private final boolean hint;
private final boolean isDossierDictionary;
private final Set<DictionaryEntry> entries;
private final Set<DictionaryEntry> falsePositives;
private final Set<DictionaryEntry> falseRecommendations;
private transient SearchImplementation entriesSearch;
private transient SearchImplementation falsePositiveSearch;
private transient SearchImplementation falseRecommendationsSearch;
private transient SearchImplementation localSearch;
private final Set<String> localEntries = new HashSet<>();
public DictionaryModel(String type,
int rank,
float[] color,
boolean caseInsensitive,
boolean hint,
Set<DictionaryEntry> entries,
Set<DictionaryEntry> falsePositives,
Set<DictionaryEntry> falseRecommendations,
boolean isDossierDictionary) {
this.type = type;
this.rank = rank;
this.color = color;
this.caseInsensitive = caseInsensitive;
this.hint = hint;
this.isDossierDictionary = isDossierDictionary;
this.entries = entries;
this.falsePositives = falsePositives;
this.falseRecommendations = falseRecommendations;
this.entriesSearch = new SearchImplementation(this.entries.stream().filter(e -> !e.isDeleted()).map(DictionaryEntry::getValue).collect(Collectors.toList()), caseInsensitive);
this.falsePositiveSearch = new SearchImplementation(this.falsePositives.stream().filter(e -> !e.isDeleted()).map(DictionaryEntry::getValue).collect(Collectors.toList()), caseInsensitive);
this.falseRecommendationsSearch = new SearchImplementation(this.falseRecommendations.stream().filter(e -> !e.isDeleted()).map(DictionaryEntry::getValue).collect(Collectors.toList()), caseInsensitive);
public Set<String> getValues(boolean local) {
return local ? localEntries : entries.stream().filter(e -> !e.isDeleted()).map(e -> e.getValue()).collect(Collectors
.toSet());
}
public SearchImplementation getLocalSearch() {
if (this.localSearch == null) {
this.localSearch = new SearchImplementation(this.localEntries, caseInsensitive);
}
return this.localSearch;
}
public SearchImplementation getEntriesSearch() {
if (entriesSearch == null) {
this.entriesSearch = new SearchImplementation(this.entries.stream().filter(e -> !e.isDeleted()).map(DictionaryEntry::getValue).collect(Collectors.toList()), caseInsensitive);
}
return entriesSearch;
}
public SearchImplementation getFalsePositiveSearch() {
if (falsePositiveSearch == null) {
this.falsePositiveSearch = new SearchImplementation(this.falsePositives.stream().filter(e -> !e.isDeleted()).map(DictionaryEntry::getValue).collect(Collectors.toList()), caseInsensitive);
}
return falsePositiveSearch;
}
public SearchImplementation getFalseRecommendationsSearch() {
if (falseRecommendationsSearch == null) {
this.falseRecommendationsSearch = new SearchImplementation(this.falseRecommendations.stream().filter(e -> !e.isDeleted()).map(DictionaryEntry::getValue).collect(Collectors.toList()), caseInsensitive);
}
return falseRecommendationsSearch;
}
}
@@ -48,11 +48,13 @@ public class Entity implements ReasonHolder {
private Set<Entity> references = new HashSet<>();
private EntityType entityType;
public Entity(String word, String type, boolean redaction, String redactionReason,
List<EntityPositionSequence> positionSequences, String headline, int matchedRule, int sectionNumber,
String legalBasis, boolean isDictionaryEntry, String textBefore, String textAfter, Integer start,
Integer end, boolean isDossierDictionaryEntry, Set<Engine> engines, Set<Entity> references) {
Integer end, boolean isDossierDictionaryEntry, Set<Engine> engines, Set<Entity> references, EntityType entityType) {
this.word = word;
this.type = type;
@@ -71,11 +73,12 @@ public class Entity implements ReasonHolder {
this.isDossierDictionaryEntry = isDossierDictionaryEntry;
this.engines = engines;
this.references = references;
this.entityType = entityType;
}
public Entity(String word, String type, Integer start, Integer end, String headline, int sectionNumber,
boolean isDictionaryEntry, boolean isDossierDictionaryEntry, Engine engine) {
boolean isDictionaryEntry, boolean isDossierDictionaryEntry, Engine engine, EntityType entityType) {
this.word = word;
this.type = type;
@@ -86,6 +89,7 @@ public class Entity implements ReasonHolder {
this.isDictionaryEntry = isDictionaryEntry;
this.isDossierDictionaryEntry = isDossierDictionaryEntry;
this.engines.add(engine);
this.entityType = entityType;
}
@@ -0,0 +1,5 @@
package com.iqser.red.service.redaction.v1.server.redaction.model;
public enum EntityType {
ENTITY, RECOMMENDATION, FALSE_POSITIVE, FALSE_RECOMMENDATION
}
@@ -1,7 +1,9 @@
package com.iqser.red.service.redaction.v1.server.redaction.model;
import com.fasterxml.jackson.annotation.JsonIgnore;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.utils.IdBuilder;
import com.iqser.red.service.redaction.v1.server.redaction.utils.SeparatorUtils;
import com.iqser.red.service.redaction.v1.server.redaction.utils.TextNormalizationUtilities;
import java.util.ArrayList;
@@ -11,6 +13,9 @@ import java.util.regex.Pattern;
public class SearchableText {
@JsonIgnore
private transient String stringRepresentation;
private final List<TextPositionSequence> sequences = new ArrayList<>();
@@ -88,8 +93,8 @@ public class SearchableText {
.get(i)
.charAt(j, caseInsensitive) == '-') {
if (counter != 0 || i == 0 && j == 0 || j != 0 && isSeparator(searchSpace.get(i)
.charAt(j - 1, caseInsensitive)) || j == 0 && i != 0 && isSeparator(searchSpace.get(i - 1)
if (counter != 0 || i == 0 && j == 0 || j != 0 && SeparatorUtils.isSeparator(searchSpace.get(i)
.charAt(j - 1, caseInsensitive)) || j == 0 && i != 0 && SeparatorUtils.isSeparator(searchSpace.get(i - 1)
.charAt(searchSpace.get(i - 1)
.length() - 1, caseInsensitive)) || j == 0 && i != 0 && searchSpace.get(i - 1)
.charAt(searchSpace.get(i - 1).length() - 1, caseInsensitive) != ' ' && searchSpace.get(i)
@@ -105,9 +110,9 @@ public class SearchableText {
crossSequenceParts.add(partMatch);
if (i == searchSpace.size() - 1 && j == searchSpace.get(i)
.length() - 1 || j != searchSpace.get(i).length() - 1 && isSeparator(searchSpace.get(i)
.length() - 1 || j != searchSpace.get(i).length() - 1 && SeparatorUtils.isSeparator(searchSpace.get(i)
.charAt(j + 1, caseInsensitive)) || j == searchSpace.get(i)
.length() - 1 && isSeparator(searchSpace.get(i + 1)
.length() - 1 && SeparatorUtils.isSeparator(searchSpace.get(i + 1)
.charAt(0, caseInsensitive)) || j == searchSpace.get(i)
.length() - 1 && searchSpace.get(i)
.charAt(j, caseInsensitive) != ' ' && searchSpace.get(i + 1)
@@ -175,18 +180,18 @@ public class SearchableText {
}
private boolean isSeparator(char c) {
return Character.isWhitespace(c) || Pattern.matches("\\p{Punct}", String.valueOf(c)) || c == '\"' || c == '‘' || c == '’';
}
@Override
public String toString() {
return buildString(sequences);
}
public String asString() {
if (stringRepresentation == null) {
stringRepresentation = buildString(sequences);
}
return stringRepresentation;
}
public String buildString(List<TextPositionSequence> sequences) {
@@ -3,6 +3,9 @@ package com.iqser.red.service.redaction.v1.server.redaction.model.image;
import java.util.ArrayList;
import java.util.List;
import com.fasterxml.jackson.annotation.JsonAlias;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.Data;
@Data
@@ -10,6 +13,9 @@ public class ImageServiceResponse {
private String dossierId;
private String fileId;
private List<ImageMetadata> imageMetadata = new ArrayList<>();
@JsonProperty(value = "imageMetadata")
@JsonAlias("data")
private List<ImageMetadata> data = new ArrayList<>();
}
@@ -1,17 +1,22 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.*;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactions;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.IdRemoval;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.ManualForceRedaction;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.ManualImageRecategorization;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.ManualLegalBasisChange;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.dossier.file.FileType;
import com.iqser.red.service.redaction.v1.model.Rectangle;
import com.iqser.red.service.redaction.v1.model.*;
import com.iqser.red.service.redaction.v1.server.classification.model.Document;
import com.iqser.red.service.redaction.v1.server.classification.model.SectionText;
import com.iqser.red.service.redaction.v1.server.classification.model.Text;
import com.iqser.red.service.redaction.v1.server.client.LegalBasisClient;
import com.iqser.red.service.redaction.v1.server.client.model.NerEntities;
import com.iqser.red.service.redaction.v1.server.exception.RedactionException;
import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
import com.iqser.red.service.redaction.v1.server.redaction.model.*;
import com.iqser.red.service.redaction.v1.server.redaction.utils.EntitySearchUtils;
import com.iqser.red.service.redaction.v1.server.redaction.utils.SearchImplementation;
import com.iqser.red.service.redaction.v1.server.segmentation.ImageService;
import com.iqser.red.service.redaction.v1.server.segmentation.PdfSegmentationService;
import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
@@ -27,6 +32,8 @@ import java.util.*;
import java.util.stream.Collectors;
import java.util.stream.Stream;
import static com.iqser.red.service.redaction.v1.server.redaction.service.ImportedRedactionService.IMPORTED_REDACTION_TYPE;
@Slf4j
@Service
@RequiredArgsConstructor
@@ -43,11 +50,11 @@ public class AnalyzeService {
private final RedactionServiceSettings redactionServiceSettings;
private final SectionTextBuilderService sectionTextBuilderService;
private final SectionGridCreatorService sectionGridCreatorService;
private final NerAnalyserService nerAnalyserService;
private final ImageService imageService;
private final ImportedRedactionService importedRedactionService;
public void analyzeDocumentStructure(StructureAnalyzeRequest analyzeRequest) {
public AnalyzeResult analyzeDocumentStructure(StructureAnalyzeRequest analyzeRequest) {
long startTime = System.currentTimeMillis();
@@ -55,9 +62,7 @@ public class AnalyzeService {
Document classifiedDoc;
try {
var storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(analyzeRequest
.getDossierId(), analyzeRequest.getFileId(), FileType.ORIGIN));
var storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), FileType.ORIGIN));
Map<Integer, List<PdfImage>> pdfImages = null;
if (redactionServiceSettings.isEnableImageClassification()) {
@@ -75,50 +80,24 @@ public class AnalyzeService {
Text text = new Text(pageCount, sectionTexts);
// enhance section grid with headline data
sectionTexts.forEach(sectionText -> classifiedDoc
.getSectionGrid().getSections().add(new SectionGrid.SectionGridSection(sectionText.getSectionNumber(),
sectionText.getHeadline(),
sectionText.getSectionAreas().stream().map(SectionArea::getPage).collect(Collectors.toSet()),
sectionText.getSectionAreas())));
sectionTexts.forEach(sectionText -> classifiedDoc.getSectionGrid()
.getSections()
.add(new SectionGrid.SectionGridSection(sectionText.getSectionNumber(), sectionText.getHeadline(), sectionText.getSectionAreas()
.stream()
.map(SectionArea::getPage)
.collect(Collectors.toSet()), sectionText.getSectionAreas())));
log.info("Store text and section grid for file {} in dossier {}", analyzeRequest.getFileId(), analyzeRequest.getDossierId());
redactionStorageService.storeObject(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), FileType.TEXT, text);
redactionStorageService.storeObject(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), FileType.SECTION_GRID, classifiedDoc
.getSectionGrid());
redactionStorageService.storeObject(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), FileType.SECTION_GRID, classifiedDoc.getSectionGrid());
log.info("Document structure analysis successful, took: {}", System.currentTimeMillis() - startTime);
}
public AnalyzeResult analyze(AnalyzeRequest analyzeRequest) {
long startTime = System.currentTimeMillis();
var text = redactionStorageService.getText(analyzeRequest.getDossierId(), analyzeRequest.getFileId());
var nerEntities = redactionStorageService.getNerEntities(analyzeRequest.getDossierId(), analyzeRequest.getFileId());
if (redactionServiceSettings.isEnableEntityRecognition() && nerEntities == null) {
nerAnalyserService.computeNerEntities(analyzeRequest.getDossierId(), analyzeRequest.getFileId());
nerEntities = redactionStorageService.getNerEntities(analyzeRequest.getDossierId(), analyzeRequest.getFileId());
}
dictionaryService.updateDictionary(analyzeRequest.getDossierTemplateId(), analyzeRequest.getDossierId());
KieContainer kieContainer = droolsExecutionService.updateRules(analyzeRequest.getDossierTemplateId());
long rulesVersion = droolsExecutionService.getRulesVersion(analyzeRequest.getDossierTemplateId());
Dictionary dictionary = dictionaryService.getDeepCopyDictionary(analyzeRequest.getDossierTemplateId(), analyzeRequest
.getDossierId());
PageEntities pageEntities = entityRedactionService.findEntities(dictionary, text.getSectionTexts(), kieContainer, analyzeRequest, nerEntities);
dictionaryService.updateExternalDictionary(dictionary, analyzeRequest.getDossierTemplateId(), analyzeRequest.getDossierId());
List<RedactionLogEntry> redactionLogEntries = redactionLogCreatorService.createRedactionLog(pageEntities, text.getNumberOfPages(), analyzeRequest
.getDossierTemplateId());
var legalBasis = legalBasisClient.getLegalBasisMapping(analyzeRequest.getDossierTemplateId());
var redactionLog = new RedactionLog(redactionServiceSettings.getAnalysisVersion(), analyzeRequest.getAnalysisNumber(),
redactionLogEntries, legalBasis, dictionary.getVersion().getDossierTemplateVersion(), dictionary.getVersion().getDossierVersion(),
rulesVersion, legalBasisClient.getVersion(analyzeRequest.getDossierTemplateId()));
return finalizeAnalysis(analyzeRequest, startTime, redactionLog, text, dictionary.getVersion(), false);
return AnalyzeResult.builder()
.dossierId(analyzeRequest.getDossierId())
.fileId(analyzeRequest.getFileId())
.duration(System.currentTimeMillis() - startTime)
.numberOfPages(text.getNumberOfPages())
.analysisVersion(redactionServiceSettings.getAnalysisVersion())
.build();
}
@@ -135,20 +114,24 @@ public class AnalyzeService {
return analyze(analyzeRequest);
}
DictionaryIncrement dictionaryIncrement = dictionaryService.getDictionaryIncrements(analyzeRequest.getDossierTemplateId(), new DictionaryVersion(redactionLog
.getDictionaryVersion(), redactionLog.getDossierDictionaryVersion()), analyzeRequest.getDossierId());
// var dis = System.currentTimeMillis();
DictionaryIncrement dictionaryIncrement = dictionaryService.getDictionaryIncrements(analyzeRequest.getDossierTemplateId(), new DictionaryVersion(redactionLog.getDictionaryVersion(), redactionLog.getDossierDictionaryVersion()), analyzeRequest.getDossierId());
// log.info("Dictionary Increment time time: {} ms", (System.currentTimeMillis() - dis));
// var fis = System.currentTimeMillis();
Set<Integer> sectionsToReanalyse = !analyzeRequest.getSectionsToReanalyse()
.isEmpty() ? analyzeRequest.getSectionsToReanalyse() : findSectionsToReanalyse(dictionaryIncrement, redactionLog, text, analyzeRequest);
// log.info("Find sections time: {} ms", (System.currentTimeMillis() - fis));
if (sectionsToReanalyse.isEmpty()) {
return finalizeAnalysis(analyzeRequest, startTime, redactionLog, text, dictionaryIncrement.getDictionaryVersion(), true);
}
var nerEntities = redactionStorageService.getNerEntities(analyzeRequest.getDossierId(), analyzeRequest.getFileId());
if (redactionServiceSettings.isEnableEntityRecognition() && nerEntities == null) {
nerAnalyserService.computeNerEntities(analyzeRequest.getDossierId(), analyzeRequest.getFileId());
NerEntities nerEntities;
if (redactionServiceSettings.isNerServiceEnabled()) {
nerEntities = redactionStorageService.getNerEntities(analyzeRequest.getDossierId(), analyzeRequest.getFileId());
} else {
nerEntities = NerEntities.builder().build();
}
List<SectionText> reanalysisSections = text.getSectionTexts()
@@ -156,21 +139,67 @@ public class AnalyzeService {
.filter(sectionText -> sectionsToReanalyse.contains(sectionText.getSectionNumber()))
.collect(Collectors.toList());
// long kis = System.currentTimeMillis();
KieContainer kieContainer = droolsExecutionService.updateRules(analyzeRequest.getDossierTemplateId());
// log.info("Kie time: {} ms", (System.currentTimeMillis() - kis));
Dictionary dictionary = dictionaryService.getDeepCopyDictionary(analyzeRequest.getDossierTemplateId(), analyzeRequest
.getDossierId());
// long dds = System.currentTimeMillis();
Dictionary dictionary = dictionaryService.getDeepCopyDictionary(analyzeRequest.getDossierTemplateId(), analyzeRequest.getDossierId());
// log.info("Dict Time time: {} ms", (System.currentTimeMillis() - dds));
// long pis = System.currentTimeMillis();
PageEntities pageEntities = entityRedactionService.findEntities(dictionary, reanalysisSections, kieContainer, analyzeRequest, nerEntities);
var newRedactionLogEntries = redactionLogCreatorService.createRedactionLog(pageEntities, text.getNumberOfPages(), analyzeRequest
.getDossierTemplateId());
// log.info("Find Entities time: {}", (System.currentTimeMillis() - pis));
redactionLog.getRedactionLogEntry().removeIf(entry -> sectionsToReanalyse.contains(entry.getSectionNumber()));
redactionLog.getRedactionLogEntry().addAll(newRedactionLogEntries);
// long crs = System.currentTimeMillis();
var newRedactionLogEntries = redactionLogCreatorService.createRedactionLog(pageEntities, text.getNumberOfPages(), analyzeRequest.getDossierTemplateId());
// log.info("Create Redaction-log time: {} ms", (System.currentTimeMillis() - crs));
// long prs = System.currentTimeMillis();
var importedRedactionFilteredEntries = importedRedactionService.processImportedRedactions(analyzeRequest.getDossierTemplateId(), analyzeRequest.getDossierId(), analyzeRequest.getFileId(), newRedactionLogEntries, false);
// log.info("Process imports time: {} ms", (System.currentTimeMillis() - prs));
redactionLog.getRedactionLogEntry()
.removeIf(entry -> sectionsToReanalyse.contains(entry.getSectionNumber()) && !entry.getType()
.equals(IMPORTED_REDACTION_TYPE));
redactionLog.getRedactionLogEntry().addAll(importedRedactionFilteredEntries);
// var fls = System.currentTimeMillis();
// log.info("Finalize time: {} ms", (System.currentTimeMillis() - fls));
return finalizeAnalysis(analyzeRequest, startTime, redactionLog, text, dictionaryIncrement.getDictionaryVersion(), true);
}
public AnalyzeResult analyze(AnalyzeRequest analyzeRequest) {
long startTime = System.currentTimeMillis();
var text = redactionStorageService.getText(analyzeRequest.getDossierId(), analyzeRequest.getFileId());
NerEntities nerEntities;
if (redactionServiceSettings.isNerServiceEnabled()) {
nerEntities = redactionStorageService.getNerEntities(analyzeRequest.getDossierId(), analyzeRequest.getFileId());
} else {
nerEntities = NerEntities.builder().build();
}
dictionaryService.updateDictionary(analyzeRequest.getDossierTemplateId(), analyzeRequest.getDossierId());
KieContainer kieContainer = droolsExecutionService.updateRules(analyzeRequest.getDossierTemplateId());
long rulesVersion = droolsExecutionService.getRulesVersion(analyzeRequest.getDossierTemplateId());
Dictionary dictionary = dictionaryService.getDeepCopyDictionary(analyzeRequest.getDossierTemplateId(), analyzeRequest.getDossierId());
PageEntities pageEntities = entityRedactionService.findEntities(dictionary, text.getSectionTexts(), kieContainer, analyzeRequest, nerEntities);
List<RedactionLogEntry> redactionLogEntries = redactionLogCreatorService.createRedactionLog(pageEntities, text.getNumberOfPages(), analyzeRequest.getDossierTemplateId());
var legalBasis = legalBasisClient.getLegalBasisMapping(analyzeRequest.getDossierTemplateId());
var redactionLog = new RedactionLog(redactionServiceSettings.getAnalysisVersion(), analyzeRequest.getAnalysisNumber(), redactionLogEntries, legalBasis, dictionary.getVersion()
.getDossierTemplateVersion(), dictionary.getVersion()
.getDossierVersion(), rulesVersion, legalBasisClient.getVersion(analyzeRequest.getDossierTemplateId()));
var importedRedactionFilteredEntries = importedRedactionService.processImportedRedactions(analyzeRequest.getDossierTemplateId(), analyzeRequest.getDossierId(), analyzeRequest.getFileId(), redactionLog.getRedactionLogEntry(), true);
redactionLog.setRedactionLogEntry(importedRedactionFilteredEntries);
return finalizeAnalysis(analyzeRequest, startTime, redactionLog, text, dictionary.getVersion(), false);
}
private Set<Integer> findSectionsToReanalyse(DictionaryIncrement dictionaryIncrement, RedactionLog redactionLog,
Text text, AnalyzeRequest analyzeRequest) {
@@ -180,7 +209,7 @@ public class AnalyzeService {
Set<Integer> sectionsToReanalyse = new HashSet<>();
Map<Integer, Set<Image>> imageEntries = new HashMap<>();
for (RedactionLogEntry entry : redactionLog.getRedactionLogEntry()) {
if (entry.isManual() || relevantManuallyModifiedAnnotationIds.contains(entry.getId())) {
if (entry.isLocalManualRedaction() || relevantManuallyModifiedAnnotationIds.contains(entry.getId())) {
sectionsToReanalyse.add(entry.getSectionNumber());
}
if (entry.isImage()) {
@@ -188,13 +217,19 @@ public class AnalyzeService {
}
}
// long ss = System.currentTimeMillis();
var dictionaryIncrementsSearch = new SearchImplementation(dictionaryIncrement.getValues().stream()
.map(DictionaryIncrementValue::getValue).collect(Collectors.toList()), true);
for (SectionText sectionText : text.getSectionTexts()) {
if (EntitySearchUtils.sectionContainsAny(sectionText.getText(), dictionaryIncrement.getValues())) {
if (EntitySearchUtils.sectionContainsAny(sectionText.getText(), dictionaryIncrementsSearch)) {
sectionsToReanalyse.add(sectionText.getSectionNumber());
}
}
// log.info("Section Find time: {}", (System.currentTimeMillis() - ss));
log.info("Should reanalyze {} sections for request: {}, took: {}", sectionsToReanalyse.size(), analyzeRequest, System.currentTimeMillis() - start);
@@ -211,10 +246,8 @@ public class AnalyzeService {
excludeExcludedPages(redactionLog, analyzeRequest.getExcludedPages());
var redactionLogChange = redactionChangeLogService.computeChanges(analyzeRequest.getDossierId(), analyzeRequest.getFileId(),
redactionLog, analyzeRequest.getAnalysisNumber());
redactionStorageService.storeObject(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), FileType.REDACTION_LOG, redactionLogChange
.getRedactionLog());
var redactionLogChange = redactionChangeLogService.computeChanges(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), redactionLog, analyzeRequest.getAnalysisNumber());
redactionStorageService.storeObject(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), FileType.REDACTION_LOG, redactionLogChange.getRedactionLog());
long duration = System.currentTimeMillis() - startTime;
@@ -231,6 +264,7 @@ public class AnalyzeService {
.legalBasisVersion(redactionLog.getLegalBasisVersion())
.dossierDictionaryVersion(redactionLog.getDossierDictionaryVersion())
.wasReanalyzed(isReanalysis)
.manualRedactions(analyzeRequest.getManualRedactions())
.build();
}
@@ -242,13 +276,14 @@ public class AnalyzeService {
}
return Stream.concat(manualRedactions.getLegalBasisChanges()
.stream()
.map(ManualLegalBasisChange::getAnnotationId), Stream.concat(manualRedactions.getImageRecategorization()
.stream()
.map(ManualImageRecategorization::getAnnotationId), Stream.concat(manualRedactions.getIdsToRemove()
.stream()
.map(IdRemoval::getAnnotationId), manualRedactions.getForceRedactions().stream().map(ManualForceRedaction::getAnnotationId))))
.collect(Collectors.toSet());
.stream()
.map(ManualLegalBasisChange::getAnnotationId), Stream.concat(manualRedactions.getImageRecategorization()
.stream()
.map(ManualImageRecategorization::getAnnotationId), Stream.concat(manualRedactions.getIdsToRemove()
.stream()
.map(IdRemoval::getAnnotationId), manualRedactions.getForceRedactions()
.stream()
.map(ManualForceRedaction::getAnnotationId)))).collect(Collectors.toSet());
}
@@ -5,8 +5,6 @@ import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.ty
import com.iqser.red.service.redaction.v1.server.client.DictionaryClient;
import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
import com.iqser.red.service.redaction.v1.server.redaction.model.*;
import com.iqser.red.service.redaction.v1.server.redaction.utils.IdBuilder;
import feign.FeignException;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
@@ -14,7 +12,8 @@ import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.lang3.SerializationUtils;
import org.springframework.stereotype.Service;
import java.awt.Color;
import java.awt.*;
import java.util.List;
import java.util.*;
import java.util.stream.Collectors;
@@ -36,13 +35,13 @@ public class DictionaryService {
long dossierTemplateDictionaryVersion = dictionaryClient.getVersion(dossierTemplateId);
var dossierTemplateDictionary = dictionariesByDossierTemplate.get(dossierTemplateId);
if (dossierTemplateDictionary == null || dossierTemplateDictionaryVersion > dossierTemplateDictionary.getDictionaryVersion()) {
updateDictionaryEntry(dossierTemplateId, dossierTemplateDictionaryVersion, null);
updateDictionaryEntry(dossierTemplateId, dossierTemplateDictionaryVersion, getVersion(dossierTemplateDictionary), null);
}
long dossierDictionaryVersion = dictionaryClient.getVersionForDossier(dossierId);
var dossierDictionary = dictionariesByDossier.get(dossierId);
if (dossierDictionary == null || dossierDictionaryVersion > dossierDictionary.getDictionaryVersion()) {
updateDictionaryEntry(dossierTemplateId, dossierDictionaryVersion, dossierId);
updateDictionaryEntry(dossierTemplateId, dossierDictionaryVersion, getVersion(dossierDictionary), dossierId);
}
return DictionaryVersion.builder().dossierTemplateVersion(dossierTemplateDictionaryVersion).dossierVersion(dossierDictionaryVersion).build();
@@ -61,9 +60,19 @@ public class DictionaryService {
newValues.add(new DictionaryIncrementValue(dictionaryEntry.getValue(), dictionaryModel.isCaseInsensitive()));
}
});
dictionaryModel.getFalsePositives().forEach(dictionaryEntry -> {
if (dictionaryEntry.getVersion() > fromVersion.getDossierTemplateVersion()) {
newValues.add(new DictionaryIncrementValue(dictionaryEntry.getValue(), dictionaryModel.isCaseInsensitive()));
}
});
dictionaryModel.getFalseRecommendations().forEach(dictionaryEntry -> {
if (dictionaryEntry.getVersion() > fromVersion.getDossierTemplateVersion()) {
newValues.add(new DictionaryIncrementValue(dictionaryEntry.getValue(), dictionaryModel.isCaseInsensitive()));
}
});
});
if(dictionariesByDossier.containsKey(dossierId)) {
if (dictionariesByDossier.containsKey(dossierId)) {
dictionaryModels = dictionariesByDossier.get(dossierId).getDictionary();
dictionaryModels.forEach(dictionaryModel -> {
dictionaryModel.getEntries().forEach(dictionaryEntry -> {
@@ -71,6 +80,16 @@ public class DictionaryService {
newValues.add(new DictionaryIncrementValue(dictionaryEntry.getValue(), dictionaryModel.isCaseInsensitive()));
}
});
dictionaryModel.getFalsePositives().forEach(dictionaryEntry -> {
if (dictionaryEntry.getVersion() > fromVersion.getDossierVersion()) {
newValues.add(new DictionaryIncrementValue(dictionaryEntry.getValue(), dictionaryModel.isCaseInsensitive()));
}
});
dictionaryModel.getFalseRecommendations().forEach(dictionaryEntry -> {
if (dictionaryEntry.getVersion() > fromVersion.getDossierVersion()) {
newValues.add(new DictionaryIncrementValue(dictionaryEntry.getValue(), dictionaryModel.isCaseInsensitive()));
}
});
});
}
@@ -78,18 +97,61 @@ public class DictionaryService {
}
private void updateDictionaryEntry(String dossierTemplateId, long version, String dossierId) {
private void updateDictionaryEntry(String dossierTemplateId, long version, Long currentVersion, String dossierId) {
try {
DictionaryRepresentation dictionaryRepresentation = new DictionaryRepresentation();
var typeResponse = dossierId == null ? dictionaryClient.getAllTypesForDossierTemplate(dossierTemplateId) : dictionaryClient.getAllTypesForDossier(dossierId);
var typeResponse = dossierId == null ? dictionaryClient.getAllTypesForDossierTemplate(dossierTemplateId, false)
: dictionaryClient.getAllTypesForDossier(dossierId, false);
if (CollectionUtils.isNotEmpty(typeResponse)) {
List<DictionaryModel> dictionary = typeResponse
.stream()
.map(t -> new DictionaryModel(t.getType(), t.getRank(), convertColor(t.getHexColor()), t.isCaseInsensitive(), t
.isHint(), t.isRecommendation(), convertEntries(t.getId()), new HashSet<>(), dossierId != null))
.map(t -> {
Optional<DictionaryModel> oldModel;
if (dossierId == null) {
var representation = dictionariesByDossierTemplate.get(dossierTemplateId);
oldModel = representation != null ? representation.getDictionary().stream().filter(f -> f.getType().equals(t.getType())).findAny() : Optional.empty();
} else {
var representation = dictionariesByDossier.get(dossierId);
oldModel = representation != null ? representation.getDictionary().stream().filter(f -> f.getType().equals(t.getType())).findAny() : Optional.empty();
}
Set<DictionaryEntry> entries = new HashSet<>();
Set<DictionaryEntry> falsePositives = new HashSet<>();
Set<DictionaryEntry> falseRecommendations = new HashSet<>();
DictionaryEntries newEntries = getEntries(t.getId(), currentVersion);
var newValues = newEntries.getEntries().stream().map(DictionaryEntry::getValue).collect(Collectors.toSet());
var newFalsePositivesValues = newEntries.getFalsePositives().stream().map(DictionaryEntry::getValue).collect(Collectors.toSet());
var newFalseRecommendationsValues = newEntries.getFalseRecommendations().stream().map(DictionaryEntry::getValue).collect(Collectors.toSet());
oldModel.ifPresent(oldDictionaryModel -> {
});
// add old entries from existing DictionaryModel
oldModel.ifPresent(dictionaryModel -> entries.addAll(dictionaryModel.getEntries().stream().filter(
f -> !newValues.contains(f.getValue())).collect(Collectors.toList())
));
oldModel.ifPresent(dictionaryModel -> falsePositives.addAll(dictionaryModel.getFalsePositives().stream().filter(
f -> !newFalsePositivesValues.contains(f.getValue())).collect(Collectors.toList())
));
oldModel.ifPresent(dictionaryModel -> falseRecommendations.addAll(dictionaryModel.getFalseRecommendations().stream().filter(
f -> !newFalseRecommendationsValues.contains(f.getValue())).collect(Collectors.toList())
));
// Add Increments
entries.addAll(newEntries.getEntries());
falsePositives.addAll(newEntries.getFalsePositives());
falseRecommendations.addAll(newEntries.getFalseRecommendations());
return new DictionaryModel(t.getType(), t.getRank(), convertColor(t.getHexColor()), t.isCaseInsensitive(), t
.isHint(), entries, falsePositives, falseRecommendations, dossierId != null);
})
.sorted(Comparator.comparingInt(DictionaryModel::getRank).reversed())
.collect(Collectors.toList());
@@ -105,7 +167,7 @@ public class DictionaryService {
dictionaryRepresentation.setDictionaryVersion(version);
dictionaryRepresentation.setDictionary(dictionary);
if(dossierId == null) {
if (dossierId == null) {
dictionariesByDossierTemplate.put(dossierTemplateId, dictionaryRepresentation);
} else {
dictionariesByDossier.put(dossierId, dictionaryRepresentation);
@@ -118,34 +180,24 @@ public class DictionaryService {
}
public void updateExternalDictionary(Dictionary dictionary, String dossierTemplateId, String dossierId) {
private DictionaryEntries getEntries(String typeId, Long fromVersion) {
dictionary.getDictionaryModels().forEach(dm -> {
if (dm.isRecommendation() && !dm.getLocalEntries().isEmpty()) {
dictionaryClient.addEntries(IdBuilder.getTypeId(dm.getType(), dossierTemplateId, dm.isDossierDictionary() ? dossierId : null), new ArrayList<>(dm.getLocalEntries()), false, true);
long externalVersion = dictionaryClient.getVersion(dossierTemplateId);
if (externalVersion == dictionary.getVersion().getDossierTemplateVersion() + 1) {
dictionary.getVersion().setDossierTemplateVersion(externalVersion);
}
}
});
}
var type = dictionaryClient.getDictionaryForType(typeId, fromVersion);
private Set<DictionaryEntry> convertEntries(String typeId) {
var type = dictionaryClient.getDictionaryForType(typeId);
Set<DictionaryEntry> entries = new HashSet<>(type
.getEntries());
Set<DictionaryEntry> entries = type.getEntries() != null ? new HashSet<>(type.getEntries()) : new HashSet<>();
Set<DictionaryEntry> falsePositives = type.getFalsePositiveEntries() != null ? new HashSet<>(type.getFalsePositiveEntries()) : new HashSet<>();
Set<DictionaryEntry> falseRecommendations = type.getFalseRecommendationEntries() != null ? new HashSet<>(type.getFalseRecommendationEntries()) : new HashSet<>();
if (type.isCaseInsensitive()) {
entries.forEach(entry -> entry.setValue(entry.getValue().toLowerCase(Locale.ROOT)));
falsePositives.forEach(entry -> entry.setValue(entry.getValue().toLowerCase(Locale.ROOT)));
falseRecommendations.forEach(entry -> entry.setValue(entry.getValue().toLowerCase(Locale.ROOT)));
}
return entries;
return new DictionaryEntries(entries, falsePositives, falseRecommendations);
}
private float[] convertColor(String hex) {
Color color = Color.decode(hex);
@@ -153,16 +205,6 @@ public class DictionaryService {
}
public boolean isCaseInsensitiveDictionary(String type, String dossierTemplateId) {
DictionaryModel dictionaryModel = dictionariesByDossierTemplate.get(dossierTemplateId).getLocalAccessMap().get(type);
if (dictionaryModel != null) {
return dictionaryModel.isCaseInsensitive();
}
return false;
}
public float[] getColor(String type, String dossierTemplateId) {
DictionaryModel model = dictionariesByDossierTemplate.get(dossierTemplateId).getLocalAccessMap().get(type);
@@ -183,16 +225,6 @@ public class DictionaryService {
}
public boolean isRecommendation(String type, String dossierTemplateId) {
DictionaryModel model = dictionariesByDossierTemplate.get(dossierTemplateId).getLocalAccessMap().get(type);
if (model != null) {
return model.isRecommendation();
}
return false;
}
public Dictionary getDeepCopyDictionary(String dossierTemplateId, String dossierId) {
List<DictionaryModel> copy = new ArrayList<>();
@@ -204,7 +236,7 @@ public class DictionaryService {
//TODO merge dictionaries if they have same names
long dossierDictionaryVersion = -1;
if(dictionariesByDossier.containsKey(dossierId)) {
if (dictionariesByDossier.containsKey(dossierId)) {
var dossierRepresentation = dictionariesByDossier.get(dossierId);
dossierRepresentation.getDictionary().forEach(dm -> {
copy.add(SerializationUtils.clone(dm));
@@ -216,21 +248,17 @@ public class DictionaryService {
}
public float[] getRequestRemoveColor(String dossierTemplateId) {
return dictionariesByDossierTemplate.get(dossierTemplateId).getRequestRemoveColor();
}
public float[] getNotRedactedColor(String dossierTemplateId) {
return dictionariesByDossierTemplate.get(dossierTemplateId).getNotRedactedColor();
}
public float[] getRequestAddColor(String dossierTemplateId) {
return dictionariesByDossierTemplate.get(dossierTemplateId).getRequestAddColor();
private Long getVersion(DictionaryRepresentation dictionaryRepresentation) {
if (dictionaryRepresentation == null) {
return null;
} else {
return dictionaryRepresentation.getDictionaryVersion();
}
}
}
@@ -1,43 +1,27 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.stream.Collectors;
import java.util.stream.Stream;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.AnnotationStatus;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.IdRemoval;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualImageRecategorization;
import org.apache.commons.codec.binary.Base64;
import org.apache.commons.lang3.StringUtils;
import org.kie.api.runtime.KieContainer;
import org.springframework.stereotype.Service;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.IdRemoval;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.ManualImageRecategorization;
import com.iqser.red.service.redaction.v1.model.AnalyzeRequest;
import com.iqser.red.service.redaction.v1.model.Engine;
import com.iqser.red.service.redaction.v1.server.classification.model.SectionText;
import com.iqser.red.service.redaction.v1.server.client.model.NerEntities;
import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryModel;
import com.iqser.red.service.redaction.v1.server.redaction.model.Entities;
import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
import com.iqser.red.service.redaction.v1.server.redaction.model.EntityPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.model.Image;
import com.iqser.red.service.redaction.v1.server.redaction.model.PageEntities;
import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
import com.iqser.red.service.redaction.v1.server.redaction.model.Section;
import com.iqser.red.service.redaction.v1.server.redaction.model.SectionSearchableTextPair;
import com.iqser.red.service.redaction.v1.server.redaction.model.*;
import com.iqser.red.service.redaction.v1.server.redaction.utils.EntitySearchUtils;
import com.iqser.red.service.redaction.v1.server.redaction.utils.FindEntityDetails;
import com.iqser.red.service.redaction.v1.server.redaction.utils.IdBuilder;
import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
import org.apache.commons.lang3.StringUtils;
import org.kie.api.runtime.KieContainer;
import org.springframework.stereotype.Service;
import java.util.*;
import java.util.stream.Collectors;
import java.util.stream.Stream;
@Slf4j
@Service
@@ -62,7 +46,9 @@ public class EntityRedactionService {
EntitySearchUtils.removeEntitiesContainedInLarger(entities);
}
Map<Integer, List<Entity>> entitiesPerPage = convertToEnititesPerPage(entities);
Map<Integer, List<Entity>> entitiesPerPage = convertToEntitiesPerPage(entities);
EntitySearchUtils.removeEntitiesContainedInRedactedLogos(imagesPerPage, entitiesPerPage);
return new PageEntities(entitiesPerPage, imagesPerPage);
}
@@ -85,6 +71,7 @@ public class EntityRedactionService {
surroundingWordsService.addSurroundingText(entities.getEntities(), reanalysisSection.getSearchableText(), dictionary);
}
if (!local && analyzeRequest.getManualRedactions() != null) {
var approvedForceRedactions = analyzeRequest.getManualRedactions().getForceRedactions().stream()
@@ -123,6 +110,7 @@ public class EntityRedactionService {
}));
}
sectionSearchableTextPairs.add(new SectionSearchableTextPair(Section.builder()
.isLocal(false)
.dictionaryTypes(dictionary.getTypes())
@@ -141,6 +129,7 @@ public class EntityRedactionService {
.images(reanalysisSection.getImages())
.fileAttributes(analyzeRequest.getFileAttributes())
.build(), reanalysisSection.getSearchableText()));
}
Set<Entity> entities = new HashSet<>();
@@ -161,7 +150,7 @@ public class EntityRedactionService {
}
private Map<Integer, List<Entity>> convertToEnititesPerPage(Set<Entity> entities) {
private Map<Integer, List<Entity>> convertToEntitiesPerPage(Set<Entity> entities) {
Map<Integer, List<Entity>> entitiesPerPage = new HashMap<>();
for (Entity entity : entities) {
@@ -177,7 +166,7 @@ public class EntityRedactionService {
.getValue(), entity.getHeadline(), entity.getMatchedRule(), entity.getSectionNumber(), entity
.getLegalBasis(), entity.isDictionaryEntry(), entity.getTextBefore(), entity.getTextAfter(), entity
.getStart(), entity.getEnd(), entity.isDossierDictionaryEntry(), entity.getEngines(), entity
.getReferences()));
.getReferences(), entity.getEntityType()));
}
}
return entitiesPerPage;
@@ -199,90 +188,76 @@ public class EntityRedactionService {
private void addLocalValuesToDictionary(Section analysedSection, Dictionary dictionary) {
analysedSection.getLocalDictionaryAdds().keySet().forEach(key -> {
if (dictionary.isRecommendation(key)) {
analysedSection.getLocalDictionaryAdds().get(key).forEach(value -> {
if (!dictionary.containsValue(key, value)) {
dictionary.getLocalAccessMap().get(key).getLocalEntries().add(value);
}
});
} else {
analysedSection.getLocalDictionaryAdds().get(key).forEach(value -> {
analysedSection.getLocalDictionaryAdds().get(key).forEach(value -> {
if (dictionary.getLocalAccessMap().get(key) == null) {
log.warn("Dictionary {} is null", key);
}
if (dictionary.getLocalAccessMap().get(key) == null) {
log.warn("Dictionary {} is null", key);
}
if (dictionary.getLocalAccessMap().get(key).getLocalEntries() == null) {
log.warn("Dictionary {} localEntries is null", key);
}
if (dictionary.getLocalAccessMap().get(key).getLocalEntries() == null) {
log.warn("Dictionary {} localEntries is null", key);
}
dictionary.getLocalAccessMap().get(key).getLocalEntries().add(value);
});
}
dictionary.getLocalAccessMap().get(key).getLocalEntries().add(value);
});
});
}
private Entities findEntities(SearchableText searchableText, String headline, int sectionNumber,
Dictionary dictionary, boolean local, NerEntities nerEntities,
List<Integer> cellstarts) {
List<Integer> cellStarts) {
Set<Entity> found = new HashSet<>();
String searchableString = searchableText.toString();
String searchableString = searchableText.asString();
if (StringUtils.isEmpty(searchableString)) {
return new Entities(new HashSet<>(), new HashSet<>());
}
String lowercaseInputString = searchableString.toLowerCase();
for (DictionaryModel model : dictionary.getDictionaryModels()) {
if (model.isCaseInsensitive()) {
EntitySearchUtils.addOrAddEngine(found, EntitySearchUtils.find(lowercaseInputString, model.getValues(local), model
.getType(), headline, sectionNumber, !local, model.isDossierDictionary(), local ? Engine.RULE : Engine.DICTIONARY));
} else {
EntitySearchUtils.addOrAddEngine(found, EntitySearchUtils.find(searchableString, model.getValues(local), model
.getType(), headline, sectionNumber, !local, model.isDossierDictionary(), local ? Engine.RULE : Engine.DICTIONARY));
}
var searchImplementation = local ? model.getLocalSearch() : model.getEntriesSearch();
var entities = EntitySearchUtils.findEntities(model.isCaseInsensitive() ? lowercaseInputString : searchableString,
searchImplementation, model, new FindEntityDetails(model.getType(),headline, sectionNumber, !local, model.isDossierDictionary(), local ? Engine.RULE : Engine.DICTIONARY, local? EntityType.RECOMMENDATION: EntityType.ENTITY));
EntitySearchUtils.addOrAddEngine(found, entities);
}
Set<Entity> nerFound = new HashSet<>();
if (!local) {
Map<String, Set<String>> nerValuesPerType = getNerValues(sectionNumber, nerEntities, cellstarts);
nerValuesPerType.entrySet().forEach(entry -> {
EntitySearchUtils.addEntitiesWithHigherRank(nerFound, EntitySearchUtils.find(searchableString, entry.getValue(), entry
.getKey(), headline, sectionNumber, false, false, Engine.NER), dictionary);
});
nerFound.addAll(getNerValues(sectionNumber, nerEntities, cellStarts, headline));
}
return new Entities(EntitySearchUtils.clearAndFindPositions(found, searchableText, dictionary), nerFound) ;
return new Entities(EntitySearchUtils.clearAndFindPositions(found, searchableText, dictionary), nerFound);
}
private Map<String, Set<String>> getNerValues(int sectionNumber, NerEntities nerEntities,
List<Integer> cellstarts) {
private Set<Entity> getNerValues(int sectionNumber, NerEntities nerEntities, List<Integer> cellStarts,
String headline) {
Map<String, Set<String>> nerValuesPerType = new HashMap<>();
Set<Entity> entities = new HashSet<>();
if (redactionServiceSettings.isEnableEntityRecognition() && nerEntities.getResult()
.containsKey(sectionNumber)) {
nerEntities.getResult().get(sectionNumber).forEach(res -> {
if (cellstarts == null || cellstarts.isEmpty()) {
nerValuesPerType.computeIfAbsent(res.getType(), (a) -> new HashSet<>())
.add(new String(Base64.decodeBase64(res.getValue().getBytes())));
if (redactionServiceSettings.isNerServiceEnabled() && nerEntities.getData().containsKey(sectionNumber)) {
nerEntities.getData().get(sectionNumber).forEach(res -> {
if (cellStarts == null || cellStarts.isEmpty()) {
entities.add(new Entity(res.getValue(), res.getType(), res.getStartOffset(), res.getEndOffset(), headline, sectionNumber, false, false, Engine.NER, EntityType.RECOMMENDATION));
} else {
boolean intersectsCellStart = false;
for (Integer cellStart : cellstarts) {
for (Integer cellStart : cellStarts) {
if (res.getStartOffset() < cellStart && cellStart < res.getEndOffset()) {
intersectsCellStart = true;
break;
}
}
if (!intersectsCellStart) {
nerValuesPerType.computeIfAbsent(res.getType(), (a) -> new HashSet<>())
.add(new String(Base64.decodeBase64(res.getValue().getBytes())));
entities.add(new Entity(res.getValue(), res.getType(), res.getStartOffset(), res.getEndOffset(), headline, sectionNumber, false, false, Engine.NER, EntityType.RECOMMENDATION));
}
}
});
}
return nerValuesPerType;
return entities;
}
}
@@ -0,0 +1,105 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import java.util.HashSet;
import java.util.List;
import org.springframework.stereotype.Service;
import com.iqser.red.service.redaction.v1.model.ImportedRedaction;
import com.iqser.red.service.redaction.v1.model.ImportedRedactions;
import com.iqser.red.service.redaction.v1.model.Rectangle;
import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
import lombok.RequiredArgsConstructor;
@Service
@RequiredArgsConstructor
public class ImportedRedactionService {
public static final String IMPORTED_REDACTION_TYPE = "imported_redaction";
private final DictionaryService dictionaryService;
private final RedactionStorageService redactionStorageService;
public List<RedactionLogEntry> processImportedRedactions(String dossierTemplateId, String dossierId, String fileId,
List<RedactionLogEntry> redactionLogEntries,
boolean addImportedRedactions) {
var importedRedactions = redactionStorageService.getImportedRedactions(dossierId, fileId);
if (importedRedactions == null) {
return redactionLogEntries;
}
redactionLogEntries.forEach(redactionLogEntry -> addIntersections(redactionLogEntry, importedRedactions));
if (addImportedRedactions) {
return addImportedRedactionsRedactionLogEntries(dossierTemplateId, redactionLogEntries, importedRedactions);
}
return redactionLogEntries;
}
private List<RedactionLogEntry> addImportedRedactionsRedactionLogEntries(String dossierTemplateId,
List<RedactionLogEntry> redactionLogEntries,
ImportedRedactions importedRedactions) {
for (List<ImportedRedaction> importedRedactionsValues : importedRedactions.getImportedRedactions().values()) {
for (ImportedRedaction importedRedaction : importedRedactionsValues) {
RedactionLogEntry redactionLogEntry = RedactionLogEntry.builder()
.id(importedRedaction.getId())
.type(IMPORTED_REDACTION_TYPE)
.imported(true)
.redacted(true)
.positions(importedRedaction.getPositions())
.color(getColor(IMPORTED_REDACTION_TYPE, dossierTemplateId))
.build();
redactionLogEntries.add(redactionLogEntry);
}
}
return redactionLogEntries;
}
private void addIntersections(RedactionLogEntry redactionLogEntry, ImportedRedactions importedRedactions) {
for (Rectangle rectangle : redactionLogEntry.getPositions()) {
if (importedRedactions.getImportedRedactions().containsKey(rectangle.getPage())) {
var importedRedactionsOnPage = importedRedactions.getImportedRedactions().get(rectangle.getPage());
for (ImportedRedaction importedRedaction : importedRedactionsOnPage) {
for (Rectangle importedRedactionPosition : importedRedaction.getPositions()) {
if (intersects(importedRedactionPosition, rectangle)) {
if(redactionLogEntry.getImportedRedactionIntersections() == null){
redactionLogEntry.setImportedRedactionIntersections(new HashSet<>());
}
redactionLogEntry.getImportedRedactionIntersections().add(importedRedaction.getId());
}
}
}
}
}
}
private boolean intersects(Rectangle importedPosition, Rectangle redactionLogPosition) {
return redactionLogPosition.getTopLeft()
.getX() + redactionLogPosition.getWidth() > importedPosition.getTopLeft()
.getX() && redactionLogPosition.getTopLeft()
.getY() + redactionLogPosition.getHeight() > importedPosition.getTopLeft()
.getY() && redactionLogPosition.getTopLeft().getX() < importedPosition.getTopLeft()
.getX() + importedPosition.getWidth() && redactionLogPosition.getTopLeft()
.getY() < importedPosition.getTopLeft().getY() + importedPosition.getHeight();
}
private float[] getColor(String type, String dossierTemplateId) {
return dictionaryService.getColor(type, dossierTemplateId);
}
}
@@ -1,16 +1,10 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import java.util.ArrayList;
import java.util.List;
import java.util.Set;
import org.apache.commons.lang3.tuple.Pair;
import org.springframework.stereotype.Service;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactionEntry;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactions;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualResizeRedaction;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.Rectangle;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.ManualRedactionEntry;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.ManualResizeRedaction;
import com.iqser.red.service.redaction.v1.model.AnalyzeResult;
import com.iqser.red.service.redaction.v1.model.Engine;
import com.iqser.red.service.redaction.v1.model.SectionArea;
import com.iqser.red.service.redaction.v1.server.classification.model.SectionText;
@@ -18,11 +12,19 @@ import com.iqser.red.service.redaction.v1.server.classification.model.Text;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
import com.iqser.red.service.redaction.v1.server.redaction.model.EntityPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.model.EntityType;
import com.iqser.red.service.redaction.v1.server.redaction.utils.EntitySearchUtils;
import com.iqser.red.service.redaction.v1.server.redaction.utils.FindEntityDetails;
import com.iqser.red.service.redaction.v1.server.redaction.utils.SearchImplementation;
import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
import org.apache.commons.lang3.tuple.Pair;
import org.springframework.stereotype.Service;
import java.util.ArrayList;
import java.util.List;
import java.util.Set;
@Slf4j
@Service
@@ -33,8 +35,9 @@ public class ManualRedactionSurroundingTextService {
private final SurroundingWordsService surroundingWordsService;
public ManualRedactions addSurroundingText(String dossierId, String fileId, ManualRedactions manualRedactions) {
public AnalyzeResult addSurroundingText(String dossierId, String fileId, ManualRedactions manualRedactions) {
long startTime = System.currentTimeMillis();
Text text = redactionStorageService.getText(dossierId, fileId);
List<ManualRedactionEntry> processedAddRedactions = new ArrayList<>();
List<ManualResizeRedaction> processedResizeRedactions = new ArrayList<>();
@@ -51,8 +54,7 @@ public class ManualRedactionSurroundingTextService {
while (addItty.hasNext()) {
var manualAddRedaction = addItty.next();
if (sectionContainsEntry(sectionArea, manualAddRedaction.getPositions())) {
var surroundingText = findSurroundingText(sectionText, manualAddRedaction.getValue(), manualAddRedaction
.getPositions());
var surroundingText = findSurroundingText(sectionText, manualAddRedaction.getValue(), manualAddRedaction.getPositions());
manualAddRedaction.setTextBefore(surroundingText.getLeft());
manualAddRedaction.setTextAfter(surroundingText.getRight());
processedAddRedactions.add(manualAddRedaction);
@@ -64,8 +66,7 @@ public class ManualRedactionSurroundingTextService {
while (resizeItty.hasNext()) {
var manualResizeRedaction = resizeItty.next();
if (sectionContainsEntry(sectionArea, manualResizeRedaction.getPositions())) {
var surroundingText = findSurroundingText(sectionText, manualResizeRedaction.getValue(), manualResizeRedaction
.getPositions());
var surroundingText = findSurroundingText(sectionText, manualResizeRedaction.getValue(), manualResizeRedaction.getPositions());
manualResizeRedaction.setTextBefore(surroundingText.getLeft());
manualResizeRedaction.setTextAfter(surroundingText.getRight());
processedResizeRedactions.add(manualResizeRedaction);
@@ -77,27 +78,31 @@ public class ManualRedactionSurroundingTextService {
manualRedactions.getEntriesToAdd().addAll(processedAddRedactions);
manualRedactions.getResizeRedactions().addAll(processedResizeRedactions);
return manualRedactions;
return AnalyzeResult.builder()
.dossierId(dossierId)
.fileId(fileId)
.manualRedactions(manualRedactions)
.duration(System.currentTimeMillis() - startTime)
.build();
}
private Pair<String, String> findSurroundingText(SectionText sectionText, String value,
List<Rectangle> toFindPositions) {
private Pair<String, String> findSurroundingText(SectionText sectionText, String value, List<Rectangle> toFindPositions) {
Set<Entity> entities = EntitySearchUtils.find(sectionText.getText(), Set.of(value), "dummy", sectionText.getHeadline(), sectionText
.getSectionNumber(), false, false, Engine.DICTIONARY);
Set<Entity> entities = EntitySearchUtils.find(sectionText.getText(), new SearchImplementation(value, false),
new FindEntityDetails("dummy", sectionText.getHeadline(), sectionText.getSectionNumber(), false, false, Engine.DICTIONARY, EntityType.ENTITY));
Set<Entity> entitiesWithPositions = EntitySearchUtils.clearAndFindPositions(entities, sectionText.getSearchableText(), null);
Entity correctEntity = getEntityOnCorrectPosition(entitiesWithPositions, toFindPositions);
if(correctEntity == null){
if (correctEntity == null) {
log.warn("Could not calculate surrounding text");
return Pair.of("","");
return Pair.of("", "");
}
if (sectionText.getCellStarts() != null && !sectionText.getCellStarts().isEmpty()) {
surroundingWordsService.addSurroundingText(Set.of(correctEntity), sectionText.getSearchableText(), null, sectionText
.getCellStarts());
surroundingWordsService.addSurroundingText(Set.of(correctEntity), sectionText.getSearchableText(), null, sectionText.getCellStarts());
} else {
surroundingWordsService.addSurroundingText(Set.of(correctEntity), sectionText.getSearchableText(), null);
}
@@ -1,53 +0,0 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.dossier.file.FileType;
import com.iqser.red.service.redaction.v1.server.client.EntityRecognitionClient;
import com.iqser.red.service.redaction.v1.server.client.model.EntityRecognitionRequest;
import com.iqser.red.service.redaction.v1.server.client.model.EntityRecognitionSection;
import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
import org.apache.commons.codec.binary.Base64;
import org.springframework.stereotype.Service;
import java.util.stream.Collectors;
@Slf4j
@Service
@RequiredArgsConstructor
public class NerAnalyserService {
private final RedactionStorageService redactionStorageService;
private final EntityRecognitionClient entityRecognitionClient;
private final RedactionServiceSettings redactionServiceSettings;
public void computeNerEntities(String dossierId, String fileId) {
if (redactionServiceSettings.isEnableEntityRecognition()) {
var text = redactionStorageService.getText(dossierId, fileId);
long start = System.currentTimeMillis();
if (text != null) {
var nerRequest = EntityRecognitionRequest.builder()
.data(text.getSectionTexts()
.stream()
.map(sectionText -> new EntityRecognitionSection(sectionText.getSectionNumber(), new String(Base64
.encodeBase64(sectionText
.getText().getBytes()))))
.collect(Collectors.toList()))
.build();
var nerResponse = entityRecognitionClient.findAuthors(nerRequest);
log.info("Computing NER entities took: {} ms for dossierId {} and fileId {}", System.currentTimeMillis() - start, dossierId, fileId);
redactionStorageService.storeObject(dossierId, fileId, FileType.NER_ENTITIES, nerResponse);
} else {
log.warn("Warning, text for file: {} in dossier: {} is null", fileId, dossierId);
}
}
}
}
@@ -33,17 +33,11 @@ public class RedactionChangeLogService {
List<RedactionLogEntry> notRemovedPreviousEntries = previousRedactionLog.getRedactionLogEntry()
.stream()
.filter(entry -> !entry.getChanges()
.get(entry.getChanges().size() - 1)
.getType()
.equals(ChangeType.REMOVED))
.filter(entry -> !entry.lastChangeIsRemoved())
.collect(Collectors.toList());
Set<RedactionLogEntry> added = currentRedactionLog.getRedactionLogEntry().stream()
.filter(entry -> entry.getChanges().isEmpty() || !entry.getChanges()
.get(entry.getChanges().size() - 1)
.getType()
.equals(ChangeType.REMOVED)).collect(Collectors.toSet());
.filter(entry -> entry.getChanges().isEmpty() || !entry.lastChangeIsRemoved()).collect(Collectors.toSet());
notRemovedPreviousEntries.forEach(added::remove);
@@ -87,7 +81,7 @@ public class RedactionChangeLogService {
addedIds.forEach((k, v) -> {
if (v.getChanges().isEmpty()) {
v.getChanges().add(new Change(analysisNumber,ChangeType.ADDED, OffsetDateTime.now()));
v.getChanges().add(new Change(analysisNumber, ChangeType.ADDED, OffsetDateTime.now()));
}
newRedactionLogEntries.add(v);
});
@@ -17,6 +17,7 @@ import com.iqser.red.service.redaction.v1.server.parsing.model.RedTextPosition;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
import com.iqser.red.service.redaction.v1.server.redaction.model.EntityPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.model.EntityType;
import com.iqser.red.service.redaction.v1.server.redaction.model.Image;
import com.iqser.red.service.redaction.v1.server.redaction.model.PageEntities;
import com.iqser.red.service.redaction.v1.server.redaction.utils.IdBuilder;
@@ -70,7 +71,6 @@ public class RedactionLogCreatorService {
.legalBasis(image.getLegalBasis())
.matchedRule(image.getMatchedRule())
.isHint(dictionaryService.isHint(image.getType(), dossierTemplateId))
.manual(false)
.isDictionaryEntry(false)
.isRecommendation(false)
.positions(List.of(new Rectangle(new Point((float) image.getPosition()
@@ -92,7 +92,7 @@ public class RedactionLogCreatorService {
List<RedactionLogEntry> redactionLogEntities = new ArrayList<>();
// Duplicates can exist due table extraction colums over multiple rows.
// Duplicates can exist due table extraction columns over multiple rows.
Set<String> processedIds = new HashSet<>();
entityLoop:
@@ -173,10 +173,7 @@ public class RedactionLogCreatorService {
private boolean isCharClose(float x, float xDirAdj, float width) {
float max = x + (5 * width);
if (xDirAdj < max) {
return true;
}
return false;
return xDirAdj < max;
}
@@ -190,11 +187,7 @@ public class RedactionLogCreatorService {
float minY = y - offsetY;
float maxY = y + offsetY;
if (yCompare > minY && yCompare < maxY && heightCompare > minHeight && heightCompare < maxHeight) {
return true;
}
return false;
return yCompare > minY && yCompare < maxY && heightCompare > minHeight && heightCompare < maxHeight;
}
@@ -211,7 +204,8 @@ public class RedactionLogCreatorService {
.type(entity.getType())
.redacted(entity.isRedaction())
.isHint(isHint(entity.getType(), dossierTemplateId))
.isRecommendation(isRecommendation(entity.getType(), dossierTemplateId))
.isRecommendation(entity.getEntityType().equals(EntityType.RECOMMENDATION))
.isFalsePositive(entity.getEntityType().equals(EntityType.FALSE_POSITIVE) || entity.getEntityType().equals(EntityType.FALSE_RECOMMENDATION))
.section(entity.getHeadline())
.sectionNumber(entity.getSectionNumber())
.matchedRule(entity.getMatchedRule())
@@ -241,10 +235,4 @@ public class RedactionLogCreatorService {
return dictionaryService.isHint(type, dossierTemplateId);
}
private boolean isRecommendation(String type, String dossierTemplateId) {
return dictionaryService.isRecommendation(type, dossierTemplateId);
}
}
@@ -1,15 +1,26 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.*;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.AnnotationStatus;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.Comment;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactions;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.*;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.configuration.Colors;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.dossier.file.FileType;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.type.Type;
import com.iqser.red.service.redaction.v1.model.Point;
import com.iqser.red.service.redaction.v1.model.Rectangle;
import com.iqser.red.service.redaction.v1.model.*;
import com.iqser.red.service.redaction.v1.server.exception.NotFoundException;
import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
import lombok.AllArgsConstructor;
import lombok.Data;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
import org.springframework.stereotype.Service;
import java.awt.*;
import java.time.OffsetDateTime;
import java.util.List;
import java.util.*;
import java.util.stream.Collectors;
@@ -18,19 +29,55 @@ import java.util.stream.Collectors;
@RequiredArgsConstructor
public class RedactionLogMergeService {
private final DictionaryService dictionaryService;
private final SectionTextService sectionTextService;
private final RedactionStorageService redactionStorageService;
public RedactionLog mergeRedactionLogData(RedactionLog redactionLog, SectionGrid sectionGrid,
String dossierTemplateId, ManualRedactions manualRedactions,
Set<Integer> excludedPages) {
public RedactionLog provideRedactionLog(RedactionRequest redactionRequest) {
log.debug("Requested preview for: {}", redactionRequest);
var redactionLog = redactionStorageService.getRedactionLog(redactionRequest.getDossierId(), redactionRequest.getFileId());
if (redactionLog == null) {
throw new NotFoundException("RedactionLog not present");
}
SectionGrid sectionGrid = redactionStorageService.getSectionGrid(redactionRequest.getDossierId(), redactionRequest.getFileId());
if (sectionGrid.getSections().isEmpty()) {
log.info("SectionGrid does not have headlines set. Computing headlines now!");
var text = redactionStorageService.getText(redactionRequest.getDossierId(), redactionRequest.getFileId());
// enhance section grid with headline data
for (var sectionText : text.getSectionTexts()) {
sectionGrid.getSections()
.add(new SectionGrid.SectionGridSection(sectionText.getSectionNumber(), sectionText.getHeadline(), sectionText.getSectionAreas()
.stream()
.map(SectionArea::getPage)
.collect(Collectors.toSet()), sectionText.getSectionAreas()));
}
redactionStorageService.storeObject(redactionRequest.getDossierId(), redactionRequest.getFileId(), FileType.SECTION_GRID, sectionGrid);
}
log.debug("Loaded redaction log with computationalVersion: {}", redactionLog.getAnalysisVersion());
var merged = mergeRedactionLogData(redactionLog, sectionGrid, redactionRequest.getManualRedactions(), redactionRequest.getExcludedPages(), redactionRequest.getTypes(), redactionRequest.getColors());
merged.getRedactionLogEntry().removeIf(e -> e.isFalsePositive() && !redactionRequest.isIncludeFalsePositives());
return merged;
}
private RedactionLog mergeRedactionLogData(RedactionLog redactionLog, SectionGrid sectionGrid, ManualRedactions manualRedactions,
Set<Integer> excludedPages, List<Type> types, Colors colors) {
var skippedImportedRedactions = new HashSet<>();
log.info("Merging Redaction log with manual redactions");
if (manualRedactions != null) {
var manualRedactionLogEntries = addManualAddEntries(sectionGrid, manualRedactions.getEntriesToAdd(), manualRedactions.getComments(), dossierTemplateId);
var manualRedactionLogEntries = addManualAddEntries(sectionGrid, manualRedactions.getEntriesToAdd(), manualRedactions.getComments(), colors, types);
redactionLog.getRedactionLogEntry().addAll(manualRedactionLogEntries);
@@ -40,13 +87,17 @@ public class RedactionLogMergeService {
processRedactionLogEntry(manualRedactionWrappers.stream()
.filter(mr -> entry.getId().equals(mr.getId()))
.collect(Collectors.toList()), dossierTemplateId, entry);
.collect(Collectors.toList()), entry, types, colors);
if (entry.isImported() && !entry.isRedacted()) {
skippedImportedRedactions.add(entry.getId());
}
entry.setComments(manualRedactions.getComments().get(entry.getId()));
if (excludedPages != null && !excludedPages.isEmpty()) {
entry.getPositions().forEach(pos -> {
if (!entry.isManual() && excludedPages.contains(pos.getPage())) {
if (!entry.isLocalManualRedaction() && excludedPages.contains(pos.getPage())) {
entry.setExcluded(true);
}
});
@@ -57,6 +108,12 @@ public class RedactionLogMergeService {
Set<String> processedIds = new HashSet<>();
redactionLog.getRedactionLogEntry().removeIf(entry -> {
if (entry.getImportedRedactionIntersections() != null) {
entry.getImportedRedactionIntersections().removeAll(skippedImportedRedactions);
if (!entry.getImportedRedactionIntersections().isEmpty() && (!entry.isImage() || entry.isImage() && !(entry.getType().equals("image") || entry.getType().equals("ocr")))) {
return true;
}
}
if (processedIds.contains(entry.getId())) {
log.info("Duplicate annotation found with id {}", entry.getId());
return true;
@@ -109,7 +166,7 @@ public class RedactionLogMergeService {
private void processRedactionLogEntry(List<ManualRedactionWrapper> manualRedactionWrappers,
String dossierTemplateId, RedactionLogEntry redactionLogEntry) {
RedactionLogEntry redactionLogEntry, List<Type> types, Colors colors) {
manualRedactionWrappers.forEach(mrw -> {
@@ -117,12 +174,12 @@ public class RedactionLogMergeService {
var imageRecategorization = (ManualImageRecategorization) mrw.getItem();
String manualOverrideReason = null;
if (imageRecategorization.getStatus().equals(AnnotationStatus.APPROVED)) {
redactionLogEntry.setStatus(AnnotationStatus.APPROVED);
redactionLogEntry.setType(imageRecategorization.getType());
redactionLogEntry.setHasBeenRecategorized(true);
redactionLogEntry.setSection("Image:" + redactionLogEntry.getType());
if (dictionaryService.isHint(imageRecategorization.getType(), dossierTemplateId)) {
if (isHint(types, imageRecategorization.getType())) {
redactionLogEntry.setRedacted(false);
redactionLogEntry.setHint(true);
} else {
@@ -132,77 +189,65 @@ public class RedactionLogMergeService {
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", recategorized by manual override");
} else if (imageRecategorization.getStatus().equals(AnnotationStatus.REQUESTED)) {
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", requested to recategorize");
redactionLogEntry.setStatus(AnnotationStatus.REQUESTED);
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), dossierTemplateId, false, redactionLogEntry.isRedacted(), false));
redactionLogEntry.setRecategorizationType(imageRecategorization.getType());
} else {
redactionLogEntry.setStatus(AnnotationStatus.DECLINED);
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), colors, false, redactionLogEntry.isRedacted(), false, types));
}
redactionLogEntry.setManualRedactionUserId(imageRecategorization.getUser());
redactionLogEntry.setReason(manualOverrideReason);
redactionLogEntry.setManual(true);
redactionLogEntry.setManualRedactionType(ManualRedactionType.RECATEGORIZE);
redactionLogEntry.getManualChanges().add(ManualChange.from(imageRecategorization)
.withManualRedactionType(ManualRedactionType.RECATEGORIZE)
.withChange("type", imageRecategorization.getType()));
}
if (mrw.getItem() instanceof IdRemoval) {
var manualRemoval = (IdRemoval) mrw.getItem();
if (manualRemoval.getStatus().equals(AnnotationStatus.APPROVED) && manualRemoval.isRemoveFromDictionary()) {
log.info("Skipping merge for dictionary-modifying entry");
log.debug("Skipping merge for dictionary-modifying entry");
} else {
String manualOverrideReason = null;
if (manualRemoval.getStatus().equals(AnnotationStatus.APPROVED)) {
redactionLogEntry.setRedacted(false);
redactionLogEntry.setStatus(AnnotationStatus.APPROVED);
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", removed by manual override");
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), dossierTemplateId, false, redactionLogEntry.isRedacted(), true));
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), colors, false, redactionLogEntry.isRedacted(), true, types));
redactionLogEntry.setHint(false);
redactionLogEntry.setHasBeenRemovedByManualOverride(true);
} else if (manualRemoval.getStatus().equals(AnnotationStatus.REQUESTED)) {
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", requested to remove");
redactionLogEntry.setStatus(AnnotationStatus.REQUESTED);
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), dossierTemplateId, true, redactionLogEntry.isRedacted(), false));
} else {
redactionLogEntry.setStatus(AnnotationStatus.DECLINED);
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), colors, true, redactionLogEntry.isRedacted(), false, types));
}
redactionLogEntry.setReason(manualOverrideReason);
redactionLogEntry.setManual(true);
redactionLogEntry.setManualRedactionUserId(manualRemoval.getUser());
redactionLogEntry.setManualRedactionType(ManualRedactionType.REMOVE);
redactionLogEntry.setDictionaryEntry(manualRemoval.isRemoveFromDictionary());
redactionLogEntry.setDossierDictionaryEntry(manualRemoval.isRemoveFromDictionary());
redactionLogEntry.getManualChanges().add(ManualChange.from(manualRemoval)
.withManualRedactionType(manualRemoval.isRemoveFromDictionary() ?
ManualRedactionType.REMOVE_FROM_DICTIONARY : ManualRedactionType.REMOVE_LOCALLY));
}
}
if (mrw.getItem() instanceof ManualForceRedaction) {
var manualForceRedact = (ManualForceRedaction) mrw.getItem();
String manualOverrideReason = null;
var dictionaryIsHint = isHint(types, redactionLogEntry.getType());
if (manualForceRedact.getStatus().equals(AnnotationStatus.APPROVED)) {
// Forcing a skipped hint should result in a hint
if (dictionaryService.isHint(redactionLogEntry.getType(), dossierTemplateId)) {
if (dictionaryIsHint) {
redactionLogEntry.setHint(true);
} else {
redactionLogEntry.setRedacted(true);
}
redactionLogEntry.setStatus(AnnotationStatus.APPROVED);
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), dossierTemplateId, false, redactionLogEntry.isRedacted(), false));
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), colors, false, redactionLogEntry.isRedacted(), false, types));
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", forced by manual override");
redactionLogEntry.setHasBeenForced(true);
redactionLogEntry.setLegalBasis(manualForceRedact.getLegalBasis());
} else if (manualForceRedact.getStatus().equals(AnnotationStatus.REQUESTED)) {
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", requested to force redact");
redactionLogEntry.setStatus(AnnotationStatus.REQUESTED);
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), dossierTemplateId, true, redactionLogEntry.isRedacted(), false));
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", requested to force " + (dictionaryIsHint ? "hint" : "redact"));
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), colors, true, redactionLogEntry.isRedacted(), false, types));
redactionLogEntry.setLegalBasis(manualForceRedact.getLegalBasis());
} else {
redactionLogEntry.setStatus(AnnotationStatus.DECLINED);
}
redactionLogEntry.setManualRedactionUserId(manualForceRedact.getUser());
redactionLogEntry.setReason(manualOverrideReason);
redactionLogEntry.setManual(true);
redactionLogEntry.setManualRedactionType(ManualRedactionType.FORCE_REDACT);
var manualChange = ManualChange.from(manualForceRedact)
.withManualRedactionType(dictionaryIsHint ? ManualRedactionType.FORCE_HINT : ManualRedactionType.FORCE_REDACT);
redactionLogEntry.getManualChanges().add(manualChange);
}
@@ -210,11 +255,9 @@ public class RedactionLogMergeService {
var manualLegalBasisChange = (ManualLegalBasisChange) mrw.getItem();
String manualOverrideReason = null;
if (manualLegalBasisChange.getStatus().equals(AnnotationStatus.APPROVED)) {
redactionLogEntry.setStatus(AnnotationStatus.APPROVED);
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", legal basis was manually changed");
redactionLogEntry.setLegalBasis(manualLegalBasisChange.getLegalBasis());
redactionLogEntry.setRedacted(true);
redactionLogEntry.setHasLegalBasisChanged(true);
if (manualLegalBasisChange.getSection() != null) {
redactionLogEntry.setSection(manualLegalBasisChange.getSection());
}
@@ -223,47 +266,45 @@ public class RedactionLogMergeService {
}
} else if (manualLegalBasisChange.getStatus().equals(AnnotationStatus.REQUESTED)) {
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", legal basis change requested");
redactionLogEntry.setStatus(AnnotationStatus.REQUESTED);
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), dossierTemplateId, true, redactionLogEntry.isRedacted(), false));
redactionLogEntry.setLegalBasisChangeValue(manualLegalBasisChange.getLegalBasis());
} else {
redactionLogEntry.setStatus(AnnotationStatus.DECLINED);
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), colors, true, redactionLogEntry.isRedacted(), false, types));
}
redactionLogEntry.setManualRedactionUserId(manualLegalBasisChange.getUser());
redactionLogEntry.setReason(manualOverrideReason);
redactionLogEntry.setManual(true);
redactionLogEntry.setManualRedactionType(ManualRedactionType.LEGAL_BASIS_CHANGE);
var manualChange = ManualChange.from(manualLegalBasisChange)
.withManualRedactionType(ManualRedactionType.LEGAL_BASIS_CHANGE);
manualChange.withChange("legalBasis", manualLegalBasisChange.getLegalBasis());
if (manualLegalBasisChange.getSection() != null) {
manualChange.withChange("section", manualLegalBasisChange.getSection());
}
if (redactionLogEntry.isRectangle() && manualLegalBasisChange.getValue() != null) {
manualChange.withChange("value", manualLegalBasisChange.getValue());
}
redactionLogEntry.getManualChanges().add(manualChange);
}
if (mrw.getItem() instanceof ManualResizeRedaction) {
var manualResizeRedact = (ManualResizeRedaction) mrw.getItem();
String manualOverrideReason = null;
if (manualResizeRedact.getStatus().equals(AnnotationStatus.APPROVED)) {
redactionLogEntry.setStatus(AnnotationStatus.APPROVED);
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), dossierTemplateId, false, redactionLogEntry.isRedacted(), false));
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), colors, false, redactionLogEntry.isRedacted(), false, types));
redactionLogEntry.setPositions(convertPositions(manualResizeRedact.getPositions()));
redactionLogEntry.setValue(manualResizeRedact.getValue());
redactionLogEntry.setHasBeenResized(true);
redactionLogEntry.setTextBefore(manualResizeRedact.getTextBefore());
redactionLogEntry.setTextAfter(manualResizeRedact.getTextAfter());
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", resized by manual override");
} else if (manualResizeRedact.getStatus().equals(AnnotationStatus.REQUESTED)) {
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", requested to resize redact");
redactionLogEntry.setStatus(AnnotationStatus.REQUESTED);
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), dossierTemplateId, true, redactionLogEntry.isRedacted(), false));
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), colors, true, redactionLogEntry.isRedacted(), false, types));
redactionLogEntry.setPositions(convertPositions(manualResizeRedact.getPositions()));
redactionLogEntry.setTextBefore(manualResizeRedact.getTextBefore());
redactionLogEntry.setTextAfter(manualResizeRedact.getTextAfter());
} else {
redactionLogEntry.setStatus(AnnotationStatus.DECLINED);
}
redactionLogEntry.setManualRedactionUserId(manualResizeRedact.getUser());
redactionLogEntry.setReason(manualOverrideReason);
redactionLogEntry.setManual(true);
redactionLogEntry.setManualRedactionType(ManualRedactionType.RESIZE);
redactionLogEntry.getManualChanges().add(ManualChange.from(manualResizeRedact)
.withManualRedactionType(ManualRedactionType.RESIZE)
.withChange("value", manualResizeRedact.getValue()));
}
});
@@ -285,14 +326,14 @@ public class RedactionLogMergeService {
public List<RedactionLogEntry> addManualAddEntries(SectionGrid sectionGrid, Set<ManualRedactionEntry> manualAdds,
Map<String, List<Comment>> comments, String dossierTemplateId) {
Map<String, List<Comment>> comments, Colors colors, List<Type> types) {
List<RedactionLogEntry> redactionLogEntries = new ArrayList<>();
for (ManualRedactionEntry manualRedactionEntry : manualAdds) {
if (!approvedAndShouldBeInDictionary(manualRedactionEntry)) {
RedactionLogEntry redactionLogEntry = createRedactionLogEntry(manualRedactionEntry, manualRedactionEntry.getAnnotationId(), dossierTemplateId);
if (shouldCreateManualEntry(manualRedactionEntry)) {
RedactionLogEntry redactionLogEntry = createRedactionLogEntry(manualRedactionEntry, manualRedactionEntry.getAnnotationId(), colors, types);
redactionLogEntry.setPositions(convertPositions(manualRedactionEntry.getPositions()));
redactionLogEntry.setComments(comments.get(manualRedactionEntry.getAnnotationId()));
redactionLogEntry.setTextBefore(manualRedactionEntry.getTextBefore());
@@ -317,65 +358,103 @@ public class RedactionLogMergeService {
}
private boolean approvedAndShouldBeInDictionary(ManualRedactionEntry manualRedactionEntry) {
return manualRedactionEntry.getStatus()
.equals(AnnotationStatus.APPROVED) && (manualRedactionEntry.isAddToDictionary() || manualRedactionEntry.isAddToDossierDictionary());
@SuppressWarnings("PMD.UselessParentheses")
private boolean shouldCreateManualEntry(ManualRedactionEntry manualRedactionEntry) {
return (!manualRedactionEntry.isAddToDictionary() && !manualRedactionEntry.isAddToDossierDictionary())
|| ((manualRedactionEntry.isAddToDictionary() || manualRedactionEntry.isAddToDictionary()) && manualRedactionEntry.getProcessedDate() == null);
}
private RedactionLogEntry createRedactionLogEntry(ManualRedactionEntry manualRedactionEntry, String id,
String dossierTemplateId) {
Colors colors, List<Type> types) {
var addToDictionary = manualRedactionEntry.isAddToDictionary() || manualRedactionEntry.isAddToDossierDictionary();
var change = ManualChange.from(manualRedactionEntry)
.withManualRedactionType(addToDictionary ? ManualRedactionType.ADD_TO_DICTIONARY : ManualRedactionType.ADD_LOCALLY);
List<ManualChange> changeList = new ArrayList<>();
changeList.add(change);
return RedactionLogEntry.builder()
.id(id)
.color(getColorForManualAdd(manualRedactionEntry.getType(), dossierTemplateId, manualRedactionEntry.getStatus()))
.color(getColorForManualAdd(manualRedactionEntry.getType(), colors, manualRedactionEntry.getStatus(), types))
.reason(manualRedactionEntry.getReason())
.isDictionaryEntry(manualRedactionEntry.isAddToDictionary())
.isDossierDictionaryEntry(manualRedactionEntry.isAddToDossierDictionary())
.legalBasis(manualRedactionEntry.getLegalBasis())
.value(manualRedactionEntry.getValue())
.sourceId(manualRedactionEntry.getSourceId())
.section(manualRedactionEntry.getSection())
.type(manualRedactionEntry.getType())
.redacted(true)
.isHint(false)
.sectionNumber(-1)
.manual(true)
.status(manualRedactionEntry.getStatus())
.manualRedactionType(ManualRedactionType.ADD)
.manualRedactionUserId(manualRedactionEntry.getUser())
.rectangle(manualRedactionEntry.isRectangle())
.manualChanges(changeList)
.build();
}
private float[] getColor(String type, String dossierTemplateId, boolean requested, boolean isRedaction,
boolean skipped) {
private float[] getColor(String type, Colors colors, boolean requested, boolean isRedaction,
boolean skipped, List<Type> types) {
if (requested) {
return dictionaryService.getRequestRemoveColor(dossierTemplateId);
return convertColor(colors.getRequestRemove());
}
if (skipped || !isRedaction && !dictionaryService.isHint(type, dossierTemplateId)) {
return dictionaryService.getNotRedactedColor(dossierTemplateId);
if (skipped || !isRedaction && !isHint(types, type)) {
return convertColor(colors.getNotRedacted());
}
return dictionaryService.getColor(type, dossierTemplateId);
return getColor(types, type);
}
private float[] getColorForManualAdd(String type, String dossierTemplateId, AnnotationStatus status) {
private float[] getColorForManualAdd(String type, Colors colors, AnnotationStatus status, List<Type> types) {
if (status.equals(AnnotationStatus.REQUESTED)) {
return dictionaryService.getRequestAddColor(dossierTemplateId);
return convertColor(colors.getRequestAdd());
} else if (status.equals(AnnotationStatus.DECLINED)) {
return dictionaryService.getNotRedactedColor(dossierTemplateId);
return convertColor(colors.getNotRedacted());
}
return getColor(type, dossierTemplateId);
return getColor(types, type);
}
private float[] getColor(String type, String dossierTemplateId) {
private float[] getColor(List<Type> types, String type) {
return dictionaryService.getColor(type, dossierTemplateId);
var matchingTypes = getMatchingTypes(types, type);
Optional<Type> foundAndNotDeletedType = matchingTypes.stream().filter(t -> !isDeletedType(t)).findFirst();
if (foundAndNotDeletedType.isPresent()) {
return convertColor(foundAndNotDeletedType.get().getHexColor());
}
Optional<Type> firstDeletedType = matchingTypes.stream().findFirst();
return firstDeletedType.map(value -> convertColor(value.getHexColor())).orElseGet(() -> convertColor("#9398a0"));
}
boolean isHint(List<Type> types, String type) {
var matchingTypes = getMatchingTypes(types, type);
Optional<Type> foundAndNotDeletedType = matchingTypes.stream().filter(t -> !isDeletedType(t)).findFirst();
if (foundAndNotDeletedType.isPresent()) {
return foundAndNotDeletedType.get().isHint();
}
Optional<Type> firstDeletedType = matchingTypes.stream().findFirst();
return firstDeletedType.map(Type::isHint).orElse(false);
}
private float[] convertColor(String hex) {
Color color = Color.decode(hex);
return new float[]{color.getRed() / 255f, color.getGreen() / 255f, color.getBlue() / 255f};
}
private List<Type> getMatchingTypes(List<Type> types, String type) {
return types.stream().filter(t -> t.getType().equals(type)).collect(Collectors.toList());
}
private boolean isDeletedType(Type type) {
return type.getSoftDeletedTime() != null;
}
@@ -1,10 +1,5 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import java.util.ArrayList;
import java.util.List;
import org.springframework.stereotype.Service;
import com.iqser.red.service.redaction.v1.model.CellRectangle;
import com.iqser.red.service.redaction.v1.model.Point;
import com.iqser.red.service.redaction.v1.model.SectionRectangle;
@@ -14,8 +9,11 @@ import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Cell;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
import lombok.RequiredArgsConstructor;
import org.springframework.stereotype.Service;
import java.util.ArrayList;
import java.util.List;
@Service
@RequiredArgsConstructor
@@ -1,35 +1,19 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
import java.util.Locale;
import java.util.Map;
import java.util.concurrent.atomic.AtomicInteger;
import java.util.stream.Collectors;
import org.apache.commons.collections4.CollectionUtils;
import org.springframework.stereotype.Service;
import com.iqser.red.service.redaction.v1.model.Point;
import com.iqser.red.service.redaction.v1.model.SectionArea;
import com.iqser.red.service.redaction.v1.server.classification.model.Document;
import com.iqser.red.service.redaction.v1.server.classification.model.Footer;
import com.iqser.red.service.redaction.v1.server.classification.model.Header;
import com.iqser.red.service.redaction.v1.server.classification.model.Paragraph;
import com.iqser.red.service.redaction.v1.server.classification.model.SectionText;
import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
import com.iqser.red.service.redaction.v1.server.classification.model.UnclassifiedText;
import com.iqser.red.service.redaction.v1.server.redaction.model.CellValue;
import com.iqser.red.service.redaction.v1.server.redaction.model.Image;
import com.iqser.red.service.redaction.v1.server.redaction.model.ImageType;
import com.iqser.red.service.redaction.v1.server.redaction.model.PdfImage;
import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
import com.iqser.red.service.redaction.v1.server.classification.model.*;
import com.iqser.red.service.redaction.v1.server.redaction.model.*;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Cell;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
import org.apache.commons.collections4.CollectionUtils;
import org.springframework.stereotype.Service;
import java.util.*;
import java.util.concurrent.atomic.AtomicInteger;
import java.util.stream.Collectors;
@Slf4j
@Service
@@ -191,7 +175,7 @@ public class SectionTextBuilderService {
sectionText.getSectionAreas().add(sectionArea);
}
sectionText.setText(searchableText.toString());
sectionText.setText(searchableText.asString());
sectionText.setHeadline(headline);
sectionText.setSectionNumber(sectionNumber.intValue());
sectionText.setTable(false);
@@ -31,7 +31,7 @@ public class SurroundingWordsService {
if (dictionary != null && dictionary.isHint(entity.getType())) {
continue;
}
findSurroundingWords(entity, searchableText.toString(), entity.getStart(), entity.getEnd());
findSurroundingWords(entity, searchableText.asString(), entity.getStart(), entity.getEnd());
}
} catch (Exception e) {
log.warn("Could not get surrounding text!");
@@ -47,7 +47,7 @@ public class SurroundingWordsService {
}
try {
String searchableString = searchableText.toString();
String searchableString = searchableText.asString();
if (cellstarts != null) {
for (int i = 0; i < cellstarts.size(); i++) {
@@ -1,90 +1,57 @@
package com.iqser.red.service.redaction.v1.server.redaction.utils;
import java.util.ArrayList;
import java.util.Comparator;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Locale;
import java.util.Map;
import java.util.Optional;
import java.util.Set;
import java.util.regex.Pattern;
import java.util.stream.Collectors;
import com.iqser.red.service.redaction.v1.model.Engine;
import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryIncrementValue;
import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
import com.iqser.red.service.redaction.v1.server.redaction.model.EntityPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
import com.iqser.red.service.redaction.v1.server.redaction.model.*;
import lombok.experimental.UtilityClass;
import lombok.extern.slf4j.Slf4j;
import java.util.*;
import java.util.regex.Pattern;
import java.util.stream.Collectors;
@Slf4j
@UtilityClass
@SuppressWarnings("PMD")
public class EntitySearchUtils {
public boolean sectionContainsAny(String sectionText, Set<DictionaryIncrementValue> values) {
String inputString = sectionText.toLowerCase(Locale.ROOT);
for (DictionaryIncrementValue value : values) {
String cleanValue = value.getValue().toLowerCase(Locale.ROOT).trim();
if (cleanValue.length() <= 2) {
continue;
}
int startIndex;
int stopIndex = 0;
do {
startIndex = inputString.indexOf(cleanValue, stopIndex);
stopIndex = startIndex + cleanValue.length();
if (startIndex > -1 && (startIndex == 0 || Character.isWhitespace(inputString.charAt(startIndex - 1)) || isSeparator(inputString.charAt(startIndex - 1))) && (stopIndex == inputString.length() || isSeparator(inputString.charAt(stopIndex)))) {
return true;
}
} while (startIndex > -1);
}
return false;
public boolean sectionContainsAny(String sectionText, SearchImplementation searchImplementation) {
return searchImplementation.atLeastOneMatches(sectionText);
}
public Set<Entity> findEntities(String inputString, SearchImplementation searchImplementation, DictionaryModel type, FindEntityDetails details) {
public Set<Entity> find(String inputString, Set<String> values, String type, String headline, int sectionNumber,
boolean isDictionaryEntry, boolean isDossierDictionary, Engine engine) {
Set<Entity> found = find(inputString, searchImplementation, details);
Set<Entity> found = new HashSet<>();
for (String value : values) {
String cleanValue = value.trim();
if (cleanValue.length() <= 2) {
continue;
}
int startIndex;
int stopIndex = 0;
do {
startIndex = inputString.indexOf(cleanValue, stopIndex);
stopIndex = startIndex + cleanValue.length();
if (startIndex > -1 && (startIndex == 0 || Character.isWhitespace(inputString.charAt(startIndex - 1)) || isSeparator(inputString.charAt(startIndex - 1))) && (stopIndex == inputString.length() || isSeparator(inputString.charAt(stopIndex)))) {
found.add(new Entity(inputString.substring(startIndex, stopIndex), type, startIndex, stopIndex, headline, sectionNumber, isDictionaryEntry, isDossierDictionary, engine));
}
} while (startIndex > -1);
if (details.getEntityType() == EntityType.RECOMMENDATION) {
Set<Entity> falseRecommendations = find(inputString, type.getFalseRecommendationsSearch(), details.withEntityType(EntityType.FALSE_RECOMMENDATION));
removeFalsePositives(found, falseRecommendations);
found.addAll(falseRecommendations);
} else {
Set<Entity> falsePositives = find(inputString, type.getFalsePositiveSearch(), details.withEntityType(EntityType.FALSE_POSITIVE));
removeFalsePositives(found, falsePositives);
found.addAll(falsePositives);
}
return found;
}
public Set<Entity> find(String inputString, SearchImplementation searchImplementation, FindEntityDetails findEntityDetails) {
Set<Entity> entities = new HashSet<>();
private boolean isSeparator(char c) {
searchImplementation.getMatches(inputString).forEach(match -> validateAndAddEntity(entities, findEntityDetails, inputString, match.getStartIndex(), match.getEndIndex()));
return Character.isWhitespace(c) || Pattern.matches("\\p{Punct}", String.valueOf(c)) || c == '\"' || c == '‘' || c == '’';
return entities;
}
private void validateAndAddEntity(Set<Entity> entities, FindEntityDetails findEntityDetails, String inputString, int startIndex, int stopIndex) {
if ((startIndex == 0 || SeparatorUtils.isSeparator(inputString.charAt(startIndex - 1)))
&& (stopIndex == inputString.length() || SeparatorUtils.isSeparator(inputString.charAt(stopIndex)))) {
entities.add(new Entity(inputString.substring(startIndex, stopIndex), findEntityDetails.getType(), startIndex, stopIndex,
findEntityDetails.getHeadline(), findEntityDetails.getSectionNumber(), findEntityDetails.isDictionaryEntry(),
findEntityDetails.isDossierDictionary(), findEntityDetails.getEngine(), findEntityDetails.getEntityType()));
}
}
@@ -98,13 +65,10 @@ public class EntitySearchUtils {
for (String word : entitiesByWord.keySet()) {
List<Entity> orderedEntities = entitiesByWord.get(word)
.stream()
.sorted(Comparator.comparing(Entity::getStart))
.collect(Collectors.toList());
List<Entity> orderedEntities = entitiesByWord.get(word).stream().sorted(Comparator.comparing(Entity::getStart)).collect(Collectors.toList());
Entity firstEntity = orderedEntities.get(0);
List<EntityPositionSequence> positionSequences = text.getSequences(firstEntity.getWord()
.trim(), dictionary == null ? true : dictionary.isCaseInsensitiveDictionary(firstEntity.getType()), firstEntity.getTargetSequences());
.trim(), dictionary == null || dictionary.isCaseInsensitiveDictionary(firstEntity.getType()), firstEntity.getTargetSequences());
for (int i = 0; i <= orderedEntities.size() - 1; i++) {
try {
@@ -121,10 +85,10 @@ public class EntitySearchUtils {
}
public void removeEntitiesContainedInLarger(Set<Entity> entities) {
public void removeFalsePositives(Set<Entity> entities, Set<Entity> falsePositives) {
List<Entity> wordsToRemove = new ArrayList<>();
for (Entity word : entities) {
for (Entity word : falsePositives) {
for (Entity inner : entities) {
if (inner.getWord().length() < word.getWord()
.length() && inner.getStart() >= word.getStart() && inner.getEnd() <= word.getEnd() && word != inner && word.getSectionNumber() == inner.getSectionNumber()) {
@@ -132,7 +96,56 @@ public class EntitySearchUtils {
}
}
}
entities.removeAll(wordsToRemove);
wordsToRemove.forEach(entities::remove);
entities.removeAll(falsePositives);
}
public void removeEntitiesContainedInLarger(Set<Entity> entities) {
List<Entity> wordsToRemove = new ArrayList<>();
for (Entity word : entities) {
for (Entity inner : entities) {
if (inner.getWord().length() < word.getWord()
.length() && inner.getStart() >= word.getStart() && inner.getEnd() <= word.getEnd() && word != inner && word.getSectionNumber() == inner.getSectionNumber()) {
if (word.getEntityType().equals(EntityType.RECOMMENDATION) && inner.getEntityType().equals(EntityType.ENTITY)) {
wordsToRemove.add(word);
} else if(!(inner.getEntityType() == EntityType.FALSE_RECOMMENDATION && word.getEntityType() == EntityType.ENTITY ||
inner.getEntityType() == EntityType.ENTITY && word.getEntityType() == EntityType.FALSE_RECOMMENDATION)) {
wordsToRemove.add(inner);
}
}
}
}
wordsToRemove.stream().filter(e -> !e.getEntityType().equals(EntityType.FALSE_POSITIVE) && !e.getEntityType().equals(EntityType.FALSE_RECOMMENDATION)).forEach(entities::remove);
}
public static void removeEntitiesContainedInRedactedLogos(Map<Integer, Set<Image>> imagesPerPage, Map<Integer, List<Entity>> entitiesPerPage) {
if (entitiesPerPage != null && imagesPerPage != null) {
for (int page : imagesPerPage.keySet()) {
Set<Entity> removeEntitiesFromPage = new HashSet<>();
if (!entitiesPerPage.containsKey(page)) {
continue;
}
imagesPerPage.get(page).forEach(image -> {
if (image.isRedaction()) {
entitiesPerPage.get(page).forEach(entity -> {
if (isImageOverlappingEntity(image, entity)) {
log.info("Logo overlaps entity and entity will be removed");
removeEntitiesFromPage.add(entity);
}
});
}
});
entitiesPerPage.get(page).removeAll(removeEntitiesFromPage);
}
}
}
@@ -146,13 +159,20 @@ public class EntitySearchUtils {
if (entities.contains(found)) {
Optional<Entity> existingOptional = entities.stream().filter(entity -> entity.equals(found)).findFirst();
if (!existingOptional.isPresent()) {
if (existingOptional.isEmpty()) {
return;
}
var existing = existingOptional.get();
if (existing.getType().equals(found.getType())) {
existing.getEngines().addAll(found.getEngines());
if (existing.getEntityType().equals(EntityType.RECOMMENDATION) && found.getEntityType().equals(EntityType.ENTITY)
|| existing.getEntityType().equals(EntityType.ENTITY) && found.getEntityType().equals(EntityType.RECOMMENDATION)) {
existing.setEntityType(EntityType.ENTITY);
if (found.isRedaction()) {
existing.setRedaction(true);
}
}
} else if (dictionary.getDictionaryRank(existing.getType()) <= dictionary.getDictionaryRank(found.getType())) {
entities.remove(found);
entities.add(found);
@@ -170,22 +190,17 @@ public class EntitySearchUtils {
}
public void addOrAddEngine(Set<Entity> existing, Set<Entity> toBeAdded) {
private boolean isImageOverlappingEntity(Image image, Entity entity) {
for (Entity toAdd : toBeAdded) {
if (existing.contains(toAdd)) {
Optional<Entity> existingOptional = existing.stream()
.filter(entity -> entity.equals(toAdd))
.findFirst();
if (!existingOptional.isPresent()) {
return;
}
var existingEntity = existingOptional.get();
existingEntity.getEngines().addAll(toAdd.getEngines());
} else {
existing.add(toAdd);
}
}
return image.getPosition() != null && entity.getPositionSequences() != null && entity.getPositionSequences().get(0) != null && entity.getPositionSequences()
.get(0)
.getSequences() != null && entity.getPositionSequences().get(0).getSequences().get(0) != null && image.getPosition().getX() < entity.getPositionSequences()
.get(0)
.getSequences()
.get(0)
.getX1() && image.getPosition().getX() + image.getPosition().getWidth() > entity.getPositionSequences().get(0).getSequences().get(0).getX2() && image.getPosition()
.getY() < entity.getPositionSequences().get(0).getSequences().get(0).getY1() && image.getPosition().getY() + image.getPosition()
.getHeight() > entity.getPositionSequences().get(0).getSequences().get(0).getY2();
}
@@ -205,11 +220,32 @@ public class EntitySearchUtils {
}
public void addOrAddEngine(Set<Entity> existing, Set<Entity> toBeAdded) {
for (Entity toAdd : toBeAdded) {
if (existing.contains(toAdd)) {
Optional<Entity> existingOptional = existing.stream().filter(entity -> entity.equals(toAdd)).findFirst();
if (existingOptional.isEmpty()) {
return;
}
var existingEntity = existingOptional.get();
existingEntity.getEngines().addAll(toAdd.getEngines());
} else {
existing.add(toAdd);
}
}
}
/*
* returns true if the found entity overlaps with an existing entity in a way
* that neither entity is a subset of the other
*/
private boolean overlaps(Set<Entity> existingEntities, Entity found) {
for (Entity existing : existingEntities) {
if(existing.getStart().equals(found.getStart())){
// skip if either start or end is equal
if (existing.getStart().equals(found.getStart()) || existing.getEnd().equals(found.getEnd())) {
continue;
}
@@ -0,0 +1,24 @@
package com.iqser.red.service.redaction.v1.server.redaction.utils;
import com.iqser.red.service.redaction.v1.model.Engine;
import com.iqser.red.service.redaction.v1.server.redaction.model.EntityType;
import lombok.AllArgsConstructor;
import lombok.Data;
@Data
@AllArgsConstructor
public class FindEntityDetails {
private String type;
private String headline;
private int sectionNumber;
private boolean isDictionaryEntry;
private boolean isDossierDictionary;
private Engine engine;
private EntityType entityType;
public FindEntityDetails withEntityType(EntityType entityType) {
this.entityType = entityType;
return this;
}
}
@@ -0,0 +1,92 @@
package com.iqser.red.service.redaction.v1.server.redaction.utils;
import lombok.AllArgsConstructor;
import lombok.Data;
import org.ahocorasick.trie.Trie;
import java.util.ArrayList;
import java.util.Collection;
import java.util.List;
import java.util.Locale;
import java.util.regex.Pattern;
import java.util.stream.Collectors;
@Data
public class SearchImplementation {
private boolean ignoreCase;
private List<String> values;
private Pattern pattern;
private Trie trie;
public SearchImplementation(String value, boolean ignoreCase) {
this.values = List.of(value);
this.ignoreCase = ignoreCase;
this.createSearchImplementation();
}
public SearchImplementation(Collection<String> values, boolean ignoreCase) {
this.values = new ArrayList<>(values);
this.ignoreCase = ignoreCase;
this.createSearchImplementation();
}
private void createSearchImplementation() {
if (this.values.isEmpty()) {
return;
}
if (this.values.size() == 1) {
var text = this.values.iterator().next();
this.pattern = Pattern.compile(Pattern.quote(ignoreCase ? text.toLowerCase(Locale.ROOT) : text));
} else {
var builder = Trie.builder();
if (this.ignoreCase) {
builder.ignoreCase();
}
builder.addKeywords(this.values);
this.trie = builder.build();
}
}
public boolean atLeastOneMatches(String text) {
String textToCheck = text;
if (this.values.isEmpty()) {
return false;
}
if (this.pattern != null) {
if (ignoreCase) {
textToCheck = textToCheck.toLowerCase(Locale.ROOT);
}
return this.pattern.matcher(textToCheck).results().findAny().isPresent();
} else {
return this.trie.containsMatch(textToCheck);
}
}
public List<MatchPosition> getMatches(String text) {
String textToCheck = text;
if (this.values.isEmpty()) {
return new ArrayList<>();
}
if (this.pattern != null) {
if (ignoreCase) {
textToCheck = textToCheck.toLowerCase(Locale.ROOT);
}
return this.pattern.matcher(textToCheck).results().map(r -> new MatchPosition(r.start(), r.end())).collect(Collectors.toList());
} else {
return this.trie.parseText(textToCheck).stream().map(r -> new MatchPosition(r.getStart(), r.getEnd() + 1)).collect(Collectors.toList());
}
}
@Data
@AllArgsConstructor
public static class MatchPosition {
private int startIndex;
private int endIndex;
}
}
@@ -0,0 +1,15 @@
package com.iqser.red.service.redaction.v1.server.redaction.utils;
import java.util.Set;
import java.util.regex.Pattern;
public class SeparatorUtils {
private final static Set<Character> quotes = Set.of('\'', '\u0022', '\u00AB', '\u00BB', '\u2018', '\u2019', '\u201A', '\u201C', '\u201D', '\u201E'
, '\u2039', '\u203A');
public static boolean isSeparator(char c) {
return Character.isWhitespace(c) || Pattern.matches("\\p{Punct}", String.valueOf(c)) || quotes.contains(c);
}
}
@@ -31,10 +31,12 @@ public class ImageService {
public Map<Integer, List<PdfImage>> convertImages(String dossierId, String fileId){
var imageClassificationStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(dossierId, fileId, FileType.IMAGE_INFO));
ImageServiceResponse imageServiceResponse = objectMapper.readValue(imageClassificationStream, ImageServiceResponse.class);
Map<Integer, List<PdfImage>> images = new HashMap<>();
imageServiceResponse.getImageMetadata().stream().forEach(imageMetadata -> {
imageServiceResponse.getData().stream().forEach(imageMetadata -> {
var classification = imageMetadata.getFilters().isAllPassed() ? ImageType.valueOf(imageMetadata.getClassification().getLabel().toUpperCase(Locale.ROOT)) : ImageType.OTHER;
images.computeIfAbsent(imageMetadata.getPosition().getPageNumber() ,x -> new ArrayList<>())
.add(new PdfImage(new RedRectangle2D(imageMetadata.getPosition().getX1(), imageMetadata.getPosition().getY1(), imageMetadata.getGeometry().getWidth(), imageMetadata.getGeometry().getHeight()), classification, imageMetadata.getPosition().getPageNumber()));
@@ -1,8 +1,9 @@
package com.iqser.red.service.redaction.v1.server.settings;
import lombok.Data;
import org.springframework.boot.context.properties.ConfigurationProperties;
import lombok.Data;
@Data
@ConfigurationProperties("redaction-service")
public class RedactionServiceSettings {
@@ -17,6 +18,8 @@ public class RedactionServiceSettings {
private int analysisVersion = 1;
private boolean enableEntityRecognition = true;
private boolean nerServiceEnabled = true;
private boolean priorityMode;
}
@@ -8,6 +8,7 @@ import org.springframework.stereotype.Service;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.dossier.file.FileType;
import com.iqser.red.service.redaction.v1.model.ImportedRedactions;
import com.iqser.red.service.redaction.v1.model.RedactionLog;
import com.iqser.red.service.redaction.v1.model.SectionGrid;
import com.iqser.red.service.redaction.v1.server.classification.model.Text;
@@ -43,6 +44,30 @@ public class RedactionStorageService {
storageService.storeObject(StorageIdUtils.getStorageId(dossierId, fileId, fileType), objectMapper.writeValueAsBytes(any));
}
@SneakyThrows
public void storeObject(String dossierId, String fileId, FileType fileType, InputStream inputStream){
storageService.storeObject(StorageIdUtils.getStorageId(dossierId, fileId, fileType), inputStream);
}
public ImportedRedactions getImportedRedactions(String dossierId, String fileId) {
InputStreamResource inputStreamResource;
try {
inputStreamResource = storageService.getObject(StorageIdUtils.getStorageId(dossierId, fileId, FileType.IMPORTED_REDACTIONS));
} catch (StorageObjectDoesNotExist e) {
log.debug("Imported redactions not available.");
return null;
}
try {
return objectMapper.readValue(inputStreamResource.getInputStream(), ImportedRedactions.class);
} catch (IOException e) {
throw new RuntimeException("Could not imported redactions", e);
}
}
public RedactionLog getRedactionLog(String dossierId, String fileId) {
@@ -86,14 +111,13 @@ public class RedactionStorageService {
try {
inputStreamResource = storageService.getObject(StorageIdUtils.getStorageId(dossierId, fileId, FileType.NER_ENTITIES));
} catch (StorageObjectDoesNotExist e) {
log.debug("NER Entities not available.");
return null;
throw new NotFoundException("NER Entities are not available.");
}
try {
return objectMapper.readValue(inputStreamResource.getInputStream(), NerEntities.class);
} catch (IOException e) {
throw new RuntimeException("Could not convert NerEntities", e);
throw new RuntimeException("Could not convert NER Entities", e);
}
}
@@ -127,8 +151,6 @@ public class RedactionStorageService {
return dossierId + "/" + fileId + "." + fileType.name() + fileType.getExtension();
}
}
}
@@ -9,6 +9,8 @@ server:
port: 8080
spring:
main:
allow-circular-references: true # FIXME
profiles:
active: kubernetes
rabbitmq:
@@ -0,0 +1,115 @@
package com.iqser.red.service.redaction.v1.server;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.configuration.Colors;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.type.DictionaryEntry;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.type.Type;
import com.iqser.red.service.redaction.v1.server.client.DictionaryClient;
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryVersion;
import com.iqser.red.service.redaction.v1.server.redaction.service.DictionaryService;
import com.iqser.red.storage.commons.StorageAutoConfiguration;
import com.iqser.red.storage.commons.service.StorageService;
import org.junit.Test;
import org.junit.runner.RunWith;
import org.kie.api.runtime.KieContainer;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.boot.autoconfigure.EnableAutoConfiguration;
import org.springframework.boot.autoconfigure.amqp.RabbitAutoConfiguration;
import org.springframework.boot.test.context.SpringBootTest;
import org.springframework.boot.test.mock.mockito.MockBean;
import org.springframework.context.annotation.Bean;
import org.springframework.context.annotation.Configuration;
import org.springframework.context.annotation.Import;
import org.springframework.context.annotation.Primary;
import org.springframework.test.context.junit4.SpringRunner;
import java.util.List;
import java.util.stream.Collectors;
import java.util.stream.Stream;
import static org.mockito.ArgumentMatchers.*;
import static org.mockito.Mockito.when;
@RunWith(SpringRunner.class)
@SpringBootTest(classes = Application.class, webEnvironment = SpringBootTest.WebEnvironment.RANDOM_PORT)
@Import(RedactionIntegrationTest.RedactionIntegrationTestConfiguration.class)
public class DictionaryServiceTest {
@MockBean
protected KieContainer kieContainer;
@MockBean
protected DictionaryClient dictionaryClient;
@Autowired
protected DictionaryService dictionaryService;
@Configuration
@EnableAutoConfiguration(exclude = {RabbitAutoConfiguration.class, StorageAutoConfiguration.class})
public static class RedactionIntegrationTestConfiguration {
@Bean
@Primary
public StorageService inmemoryStorage() {
return new FileSystemBackedStorageService();
}
}
@Test
public void testDictionaryServiceConsistency() {
when(dictionaryClient.getVersion(anyString())).thenReturn(0L);
when(dictionaryClient.getColors(anyString())).thenReturn(new Colors("dossierTemplateId", "#cccccc",
"#cccccc", "#cccccc", "#cccccc", "#cccccc", "#cccccc",
"#cccccc", "#cccccc", "#cccccc", "#cccccc"));
var type1 = new Type();
type1.setType("type1");
type1.setId("type1");
type1.setVersion(1L);
type1.setHexColor("#cccccc");
type1.setHasDictionary(true);
type1.setEntries(Stream.of("a", "b", "c").map(t -> new DictionaryEntry(1, t, 1L, false, "type1")).collect(Collectors.toList()));
var type2 = new Type();
type2.setType("type2");
type2.setId("type2");
type2.setVersion(1L);
type2.setHexColor("#cccccc");
type2.setHasDictionary(true);
type2.setEntries(Stream.of("d", "e", "f").map(t -> new DictionaryEntry(1, t, 1L, false, "type2")).collect(Collectors.toList()));
var type1Updated = new Type();
type1Updated.setType("type1");
type1Updated.setId("type1");
type1Updated.setVersion(2L);
type1Updated.setHexColor("#cccccc");
type1Updated.setHasDictionary(true);
type1Updated.setEntries(Stream.of("z", "q", "x").map(t -> new DictionaryEntry(1, t, 2L, false, "type1")).collect(Collectors.toList()));
when(dictionaryClient.getAllTypesForDossierTemplate(anyString(), anyBoolean())).thenReturn(List.of(type1, type2));
when(dictionaryClient.getDictionaryForType("type1", null)).thenReturn(type1);
when(dictionaryClient.getDictionaryForType("type2", null)).thenReturn(type2);
when(dictionaryClient.getDictionaryForType("type1", 0L)).thenReturn(type1);
when(dictionaryClient.getDictionaryForType("type2", 0L)).thenReturn(type2);
dictionaryService.updateDictionary("dossierTemplateId", null);
var increments = dictionaryService.getDictionaryIncrements("dossierTemplateId",
DictionaryVersion.builder().dossierTemplateVersion(0L).build(), null);
when(dictionaryClient.getVersion(any())).thenReturn(1L);
when(dictionaryClient.getAllTypesForDossierTemplate(anyString(), anyBoolean())).thenReturn(List.of(type1Updated));
when(dictionaryClient.getDictionaryForType("type1", 1L)).thenReturn(type1Updated);
dictionaryService.updateDictionary("dossierTemplateId", null);
var updatedIncrements = dictionaryService.getDictionaryIncrements("dossierTemplateId",
DictionaryVersion.builder().dossierTemplateVersion(0L).build(), null);
}
}
@@ -10,15 +10,14 @@ import org.springframework.core.io.InputStreamResource;
import java.io.File;
import java.io.FileInputStream;
import java.io.FileOutputStream;
import java.util.HashMap;
import java.util.Map;
import java.io.InputStream;
import java.util.*;
public class FileSystemBackedStorageService extends S3StorageService {
public class FileSystemBackedStorageService implements StorageService{
private final Map<String, File> dataMap = new HashMap<>();
public FileSystemBackedStorageService() {
super(null, null);
}
@SneakyThrows
@@ -33,16 +32,45 @@ public class FileSystemBackedStorageService extends S3StorageService {
}
@Override
public void deleteObject(String objectId) {
dataMap.remove(objectId);
}
@Override
public boolean objectExists(String objectId) {
return dataMap.containsKey(objectId);
}
@Override
public void init() {
}
public List<String> listPaths(){
return new ArrayList<>(dataMap.keySet());
}
@SneakyThrows
@Override
public void storeObject(String objectId, byte[] data) {
File tempFile = File.createTempFile("test", ".tmp");
File tempFile = File.createTempFile("storage", objectId.replace("/","-"));
IOUtils.write(data, new FileOutputStream(tempFile));
dataMap.put(objectId, tempFile);
}
@Override
@SneakyThrows
public void storeObject(String objectId, InputStream stream) {
File tempFile = File.createTempFile("test", ".tmp");
IOUtils.copy(stream, new FileOutputStream(tempFile));
dataMap.put(objectId, tempFile);
}
public void clearStorage() {
this.dataMap.forEach((k, v) -> {
v.delete();
@@ -1,4 +1,4 @@
package com.iqser.red.service.redaction.v1.model;
package com.iqser.red.service.redaction.v1.server.annotate;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactions;
@@ -1,4 +1,4 @@
package com.iqser.red.service.redaction.v1.model;
package com.iqser.red.service.redaction.v1.server.annotate;
import lombok.AllArgsConstructor;
import lombok.Builder;
@@ -1,8 +1,15 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
package com.iqser.red.service.redaction.v1.server.annotate;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.Comment;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.dossier.file.FileType;
import com.iqser.red.service.redaction.v1.model.Rectangle;
import com.iqser.red.service.redaction.v1.model.*;
import com.iqser.red.service.redaction.v1.server.exception.RedactionException;
import com.iqser.red.service.redaction.v1.server.redaction.service.DictionaryService;
import com.iqser.red.service.redaction.v1.server.redaction.service.RedactionLogMergeService;
import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
import lombok.RequiredArgsConstructor;
import org.apache.pdfbox.io.MemoryUsageSetting;
import org.apache.pdfbox.pdmodel.PDDocument;
import org.apache.pdfbox.pdmodel.PDPage;
import org.apache.pdfbox.pdmodel.PDPageContentStream;
@@ -15,21 +22,50 @@ import org.apache.pdfbox.pdmodel.interactive.annotation.PDAnnotationText;
import org.apache.pdfbox.pdmodel.interactive.annotation.PDAnnotationTextMarkup;
import org.springframework.stereotype.Service;
import java.awt.Color;
import java.awt.*;
import java.io.ByteArrayOutputStream;
import java.io.IOException;
import java.util.ArrayList;
import java.util.GregorianCalendar;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.*;
import java.util.stream.Collectors;
@Service
@RequiredArgsConstructor
public class AnnotationService {
private final RedactionStorageService redactionStorageService;
private final DictionaryService dictionaryService;
public void annotate(PDDocument document, RedactionLog redactionLog, SectionGrid sectionGrid) throws IOException {
private final RedactionLogMergeService redactionLogMergeService;
public AnnotateResponse annotate(AnnotateRequest annotateRequest) {
var storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(annotateRequest.getDossierId(), annotateRequest.getFileId(), FileType.ORIGIN));
var mergedRedactionLog = redactionLogMergeService.provideRedactionLog(RedactionRequest.builder()
.fileId(annotateRequest.getFileId())
.manualRedactions(annotateRequest.getManualRedactions())
.dossierId(annotateRequest.getDossierId())
.dossierTemplateId(annotateRequest.getDossierTemplateId())
.build());
var sectionsGrid = redactionStorageService.getSectionGrid(annotateRequest.getDossierId(), annotateRequest.getFileId());
try (PDDocument pdDocument = PDDocument.load(storedObjectStream, MemoryUsageSetting.setupTempFileOnly())) {
pdDocument.setAllSecurityToBeRemoved(true);
dictionaryService.updateDictionary(annotateRequest.getDossierTemplateId(), annotateRequest.getDossierId());
annotate(pdDocument, mergedRedactionLog, sectionsGrid);
try (ByteArrayOutputStream byteArrayOutputStream = new ByteArrayOutputStream()) {
pdDocument.save(byteArrayOutputStream);
return AnnotateResponse.builder().document(byteArrayOutputStream.toByteArray()).build();
}
} catch (Exception e) {
throw new RedactionException(e);
}
}
private void annotate(PDDocument document, RedactionLog redactionLog, SectionGrid sectionGrid) throws IOException {
Map<Integer, List<RedactionLogEntry>> redactionLogPerPage = convertRedactionLog(redactionLog);
@@ -107,7 +143,7 @@ public class AnnotationService {
private String createAnnotationContent(RedactionLogEntry redactionLogEntry) {
if (redactionLogEntry.isManual()) {
if (redactionLogEntry.isLocalManualRedaction()) {
return "\nManual Redaction\n\nIn Section : \"" + redactionLogEntry.getSection() + "\"";
}
return redactionLogEntry.getType() + " \nRule " + redactionLogEntry.getMatchedRule() + " matched\n\n" + redactionLogEntry.getReason() + "\n\nLegal basis:" + redactionLogEntry
@@ -0,0 +1,87 @@
package com.iqser.red.service.redaction.v1.server.realdata;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.fasterxml.jackson.datatype.jsr310.JavaTimeModule;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.dossier.file.FileType;
import com.iqser.red.service.redaction.v1.model.AnalyzeRequest;
import com.iqser.red.service.redaction.v1.model.MessageType;
import lombok.SneakyThrows;
import lombok.extern.slf4j.Slf4j;
import org.junit.Test;
import org.springframework.core.io.ClassPathResource;
import java.time.OffsetDateTime;
import java.util.List;
import java.util.Set;
@Slf4j
public class AnalyseFileRealDataIntegrationTest extends LiveDataIntegrationTest {
public static final String FILE_NAME = "test-file";
@Test
@SneakyThrows
public void testFile() {
ObjectMapper om = new ObjectMapper();
om.registerModule(new JavaTimeModule());
var file = new ClassPathResource(BASE_DIR + "data/" + FILE_NAME + ".pdf").getInputStream();
redactionStorageService.storeObject("dossierId", "fileId", FileType.ORIGIN, file);
try {
var nerData = new ClassPathResource(BASE_DIR + "data/" + FILE_NAME + ".ner.json").getInputStream();
redactionStorageService.storeObject("dossierId", "fileId", FileType.NER_ENTITIES, nerData);
} catch (Exception e) {
log.warn("No NER File Provided");
redactionServiceSettings.setNerServiceEnabled(false);
}
AnalyzeRequest ar = AnalyzeRequest.builder()
.fileId("fileId")
.dossierId("dossierId")
.analysisNumber(1)
.dossierTemplateId("dossierTemplateId")
.lastProcessed(OffsetDateTime.now())
.excludedPages(Set.of())
.fileAttributes(List.of())
.build();
try {
var text = new ClassPathResource(BASE_DIR + "data/" + FILE_NAME + ".text.json").getInputStream();
var sectionText = new ClassPathResource(BASE_DIR + "data/" + FILE_NAME + ".section-grid.json").getInputStream();
redactionStorageService.storeObject("dossierId", "fileId", FileType.TEXT, text);
redactionStorageService.storeObject("dossierId", "fileId", FileType.SECTION_GRID, sectionText);
} catch (Exception e) {
log.info("No text file provided, Performing Structure analysis");
ar.setMessageType(MessageType.STRUCTURE_ANALYSE);
String in = om.writeValueAsString(ar);
redactionMessageReceiver.receiveAnalyzeRequest(in, false);
}
try {
var redactionLog = new ClassPathResource(BASE_DIR + "data/" + FILE_NAME + ".redaction-log.json").getInputStream();
} catch (Exception e) {
log.info("No redaction log provided, Performing full analysis");
ar.setMessageType(MessageType.ANALYSE);
String in = om.writeValueAsString(ar);
redactionMessageReceiver.receiveAnalyzeRequest(in, false);
}
simulateIncrement(List.of("Desiree"), "PII", 3L);
ar.setMessageType(MessageType.REANALYSE);
String in = om.writeValueAsString(ar);
redactionMessageReceiver.receiveAnalyzeRequest(in, false);
// var log = redactionStorageService.getRedactionLog("dossierId","fileId");
}
}
@@ -0,0 +1,196 @@
package com.iqser.red.service.redaction.v1.server.realdata;
import com.fasterxml.jackson.core.type.TypeReference;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.iqser.red.service.persistence.service.v1.api.model.common.JSONPrimitive;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.configuration.Colors;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.type.DictionaryEntry;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.type.Type;
import com.iqser.red.service.redaction.v1.server.Application;
import com.iqser.red.service.redaction.v1.server.FileSystemBackedStorageService;
import com.iqser.red.service.redaction.v1.server.client.*;
import com.iqser.red.service.redaction.v1.server.queue.RedactionMessageReceiver;
import com.iqser.red.service.redaction.v1.server.redaction.service.DictionaryService;
import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
import com.iqser.red.storage.commons.StorageAutoConfiguration;
import com.iqser.red.storage.commons.service.StorageService;
import lombok.SneakyThrows;
import org.apache.commons.io.IOUtils;
import org.junit.Before;
import org.junit.Test;
import org.junit.runner.RunWith;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.boot.autoconfigure.EnableAutoConfiguration;
import org.springframework.boot.autoconfigure.amqp.RabbitAutoConfiguration;
import org.springframework.boot.test.context.SpringBootTest;
import org.springframework.boot.test.mock.mockito.MockBean;
import org.springframework.context.annotation.Bean;
import org.springframework.context.annotation.Configuration;
import org.springframework.context.annotation.Import;
import org.springframework.context.annotation.Primary;
import org.springframework.core.io.ClassPathResource;
import org.springframework.core.io.Resource;
import org.springframework.core.io.support.ResourcePatternResolver;
import org.springframework.test.context.junit4.SpringRunner;
import java.util.ArrayList;
import java.util.List;
import java.util.stream.Collectors;
import static org.assertj.core.api.AssertionsForClassTypes.assertThat;
import static org.mockito.ArgumentMatchers.*;
import static org.mockito.Mockito.when;
@RunWith(SpringRunner.class)
@SpringBootTest(classes = Application.class, webEnvironment = SpringBootTest.WebEnvironment.RANDOM_PORT)
@Import(LiveDataIntegrationTest.RedactionIntegrationTestConfiguration.class)
public class LiveDataIntegrationTest {
protected static String BASE_DIR = "performance/";
protected static String EFSA_SANITISATION_GFL_V1 = "dictionaries/EFSA_sanitisation_GFL_v1/";
@MockBean
protected DictionaryClient dictionaryClient;
@MockBean
protected EntityRecognitionClient entityRecognitionClient;
@MockBean
private FileStatusProcessingUpdateClient fileStatusProcessingUpdateClient;
@MockBean
private LegalBasisClient legalBasisClient;
@Autowired
private ResourcePatternResolver resourcePatternResolver;
@MockBean
private RulesClient rulesClient;
@Autowired
protected DictionaryService dictionaryService;
@Autowired
protected RedactionStorageService redactionStorageService;
@Autowired
protected RedactionMessageReceiver redactionMessageReceiver;
@Autowired
protected FileSystemBackedStorageService fileSystemBackedStorageService;
@Autowired
protected RedactionServiceSettings redactionServiceSettings;
private List<Type> types;
@Configuration
@EnableAutoConfiguration(exclude = {RabbitAutoConfiguration.class, StorageAutoConfiguration.class})
public static class RedactionIntegrationTestConfiguration {
@Bean
@Primary
public StorageService inmemoryStorage() {
return new FileSystemBackedStorageService();
}
}
@SneakyThrows
@Before
public void prepareTest() {
when(dictionaryClient.getVersion(anyString())).thenReturn(1L);
when(dictionaryClient.getVersionForDossier(anyString())).thenReturn(1L);
var rules = IOUtils.toString(new ClassPathResource(BASE_DIR + EFSA_SANITISATION_GFL_V1 + "rules.drl").getInputStream());
when(rulesClient.getRules(any())).thenReturn(JSONPrimitive.of(rules));
ObjectMapper objectMapper = new ObjectMapper();
var jsonNode = objectMapper.readTree(new ClassPathResource(BASE_DIR + EFSA_SANITISATION_GFL_V1 + "types.json").getInputStream());
types = objectMapper.treeToValue(jsonNode.get("types"), objectMapper.getTypeFactory().constructType(
new TypeReference<List<Type>>() {
}));
types.forEach(t -> {
t.setId(t.getType());
t.setVersion(0L);
});
when(dictionaryClient.getAllTypesForDossierTemplate(anyString(), anyBoolean())).thenReturn(types);
when(dictionaryClient.getAllTypesForDossier(anyString(), anyBoolean())).thenReturn(new ArrayList<>());
when(dictionaryClient.getColors(anyString())).thenReturn(objectMapper.readValue(new ClassPathResource(BASE_DIR + EFSA_SANITISATION_GFL_V1 + "colors.json").getInputStream(), Colors.class));
when(dictionaryClient.getDictionaryForType(anyString(), nullable(Long.class))).then(answer -> {
String typeName = answer.getArgument(0);
var found = types.stream().filter(t -> t.getType().equalsIgnoreCase(typeName)).findFirst();
if(found.isPresent()) {
var type = types.stream().filter(t -> t.getType().equalsIgnoreCase(typeName)).findFirst().get();
type.setEntries(getEntries(typeName, type.getTypeId()));
return type;
}else{
return null;
}
});
dictionaryService.updateDictionary("dossierTemplateId","dossierId");
}
public void simulateIncrement(List<String> values, String deltaTypeName, long version) {
when(dictionaryClient.getVersion(anyString())).thenReturn(version);
when(dictionaryClient.getVersionForDossier(anyString())).thenReturn(version);
when(dictionaryClient.getDictionaryForType(anyString(), nullable(Long.class))).then(answer -> {
String typeName = answer.getArgument(0);
var found = types.stream().filter(t -> t.getType().equalsIgnoreCase(typeName)).findFirst();
if(found.isPresent()) {
var type = types.stream().filter(t -> t.getType().equalsIgnoreCase(typeName)).findFirst().get();
if (deltaTypeName.equalsIgnoreCase(typeName)) {
type.setEntries(values.stream().map(l -> new DictionaryEntry(0, l, version, false, type.getTypeId())).collect(Collectors.toList()));
} else {
type.setEntries(new ArrayList<>());
}
return type;
}else{
return null;
}
});
}
@Test
public void testUpdateDictionary() {
dictionaryService.updateDictionary("dossierTemplateId", "dossierId");
var dict = dictionaryService.getDeepCopyDictionary("dossierTemplateId", "dossierId");
assertThat(dict.getLocalAccessMap().size()).isEqualTo(12);
}
@SneakyThrows
private List<DictionaryEntry> getEntries(String typeName, String typeId) {
Resource[] dictionaryResources = resourcePatternResolver.getResources("classpath:" + BASE_DIR + EFSA_SANITISATION_GFL_V1 + "dictionaries/**");
for (var resource : dictionaryResources) {
if (resource.getFilename().contains(typeName)) {
List<String> lines = IOUtils.readLines(resource.getInputStream());
return lines.stream().map(l -> new DictionaryEntry(0, l, 0L, false, typeId)).collect(Collectors.toList());
}
}
return new ArrayList<>();
}
}
@@ -9,6 +9,7 @@ import org.junit.Test;
import com.iqser.red.service.redaction.v1.model.Engine;
import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
import com.iqser.red.service.redaction.v1.server.redaction.model.EntityType;
public class EntitySearchUtilsTest {
@@ -16,8 +17,8 @@ public class EntitySearchUtilsTest {
public void testNestedEntitiesRemoval() {
Set<Entity> entities = new HashSet<>();
Entity nested = new Entity("nested", "fake type", 10, 16, "fake headline", 0, false, false, Engine.RULE);
Entity nesting = new Entity("nesting nested", "fake type", 2, 16, "fake headline", 0, false, false, Engine.RULE);
Entity nested = new Entity("nested", "fake type", 10, 16, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
Entity nesting = new Entity("nesting nested", "fake type", 2, 16, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
entities.add(nested);
entities.add(nesting);
EntitySearchUtils.removeEntitiesContainedInLarger(entities);
@@ -39,14 +40,14 @@ public class EntitySearchUtilsTest {
// Arrange
Set<Entity> existingEntities = new HashSet<>();
Entity existingEntity1 = new Entity("Batman", "fake type", 0, 5, "fake headline", 0, false, false, Engine.RULE);
Entity existingEntity2 = new Entity("Superman", "fake type", 10, 17, "fake headline", 0, false, false, Engine.RULE);
Entity existingEntity1 = new Entity("Batman", "fake type", 0, 5, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
Entity existingEntity2 = new Entity("Superman", "fake type", 10, 17, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
existingEntities.add(existingEntity1);
existingEntities.add(existingEntity2);
Set<Entity> foundEntities = new HashSet<>();
Entity foundEntities1 = new Entity("Batman X.", "fake type", 0, 8, "fake headline", 0, false, false, Engine.RULE);
Entity foundEntities2 = new Entity("Superman Y.", "fake type", 10, 20, "fake headline", 0, false, false, Engine.RULE);
Entity foundEntities1 = new Entity("Batman X.", "fake type", 0, 8, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
Entity foundEntities2 = new Entity("Superman Y.", "fake type", 10, 20, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
foundEntities.add(foundEntities1);
foundEntities.add(foundEntities2);
@@ -72,14 +73,14 @@ public class EntitySearchUtilsTest {
// Arrange
Set<Entity> existingEntities = new HashSet<>();
Entity existingEntity1 = new Entity("Batman X.", "fake type", 0, 8, "fake headline", 0, false, false, Engine.RULE);
Entity existingEntity2 = new Entity("Superman", "fake type", 10, 17, "fake headline", 0, false, false, Engine.RULE);
Entity existingEntity1 = new Entity("Batman X.", "fake type", 0, 8, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
Entity existingEntity2 = new Entity("Superman", "fake type", 10, 17, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
existingEntities.add(existingEntity1);
existingEntities.add(existingEntity2);
Set<Entity> foundEntities = new HashSet<>();
Entity foundEntities1 = new Entity("Batman X.", "fake type", 0, 8, "fake headline", 0, false, false, Engine.RULE);
Entity foundEntities2 = new Entity("X. Superman Y.", "fake type", 7, 20, "fake headline", 0, false, false, Engine.RULE);
Entity foundEntities1 = new Entity("Batman X.", "fake type", 0, 8, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
Entity foundEntities2 = new Entity("X. Superman Y.", "fake type", 7, 20, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
foundEntities.add(foundEntities1);
foundEntities.add(foundEntities2);
@@ -104,14 +105,14 @@ public class EntitySearchUtilsTest {
// Arrange
Set<Entity> existingEntities = new HashSet<>();
Entity existingEntity1 = new Entity("Batman X.", "fake type", 0, 8, "fake headline", 0, false, false, Engine.RULE);
Entity existingEntity2 = new Entity("Superman", "fake type", 10, 17, "fake headline", 0, false, false, Engine.RULE);
Entity existingEntity1 = new Entity("Batman X.", "fake type", 0, 8, "fake headline", 0, false, false, Engine.RULE,EntityType.ENTITY);
Entity existingEntity2 = new Entity("Superman", "fake type", 10, 17, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
existingEntities.add(existingEntity1);
existingEntities.add(existingEntity2);
Set<Entity> foundEntities = new HashSet<>();
Entity foundEntities1 = new Entity("Batman X.", "fake type", 0, 8, "fake headline", 0, false, false, Engine.RULE);
Entity foundEntities2 = new Entity("X. Superman", "fake type", 7, 17, "fake headline", 0, false, false, Engine.RULE);
Entity foundEntities1 = new Entity("Batman X.", "fake type", 0, 8, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
Entity foundEntities2 = new Entity("X. Superman", "fake type", 7, 17, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
foundEntities.add(foundEntities1);
foundEntities.add(foundEntities2);
@@ -136,22 +137,25 @@ public class EntitySearchUtilsTest {
// Arrange
Set<Entity> existingEntities = new HashSet<>();
Entity existingEntity1 = new Entity("X. Superman", "fake type", 7, 17, "fake headline", 0, false, false, Engine.RULE);
Entity existingEntity2 = new Entity("Batman", "fake type", 0, 5, "fake headline", 0, false, false, Engine.RULE);
Entity existingEntity1 = new Entity("X. Superman", "fake type", 7, 17, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
Entity existingEntity2 = new Entity("Batman", "fake type", 0, 5, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
existingEntities.add(existingEntity1);
existingEntities.add(existingEntity2);
Set<Entity> foundEntities = new HashSet<>();
Entity foundEntities1 = new Entity("Batman X.", "fake type", 0, 8, "fake headline", 0, false, false, Engine.RULE);
Entity foundEntities2 = new Entity("Superman", "fake type", 10, 17, "fake headline", 0, false, false, Engine.RULE);
Entity foundEntities1 = new Entity("Batman X.", "fake type", 0, 8, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
Entity foundEntities2 = new Entity("Superman", "fake type", 10, 17, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
Entity foundEntities3 = new Entity("Superman Y.", "fake type", 10, 20, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
foundEntities.add(foundEntities1);
foundEntities.add(foundEntities2);
foundEntities.add(foundEntities3);
// Act
Set<Entity> result = EntitySearchUtils.findNonOverlappingMatchEntities(existingEntities, foundEntities);
// Assert
assertThat(result.size()).isEqualTo(0);
assertThat(result.size()).isEqualTo(1);
assertThat(result.contains(foundEntities2));
}
@@ -166,22 +170,27 @@ public class EntitySearchUtilsTest {
// Arrange
Set<Entity> existingEntities = new HashSet<>();
Entity existingEntity1 = new Entity("X. Superman", "fake type", 7, 17, "fake headline", 0, false, false, Engine.RULE);
Entity existingEntity2 = new Entity("Batman", "fake type", 0, 5, "fake headline", 0, false, false, Engine.RULE);
Entity existingEntity1 = new Entity("X. Superman", "fake type", 7, 17, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
Entity existingEntity2 = new Entity("Batman", "fake type", 0, 5, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
existingEntities.add(existingEntity1);
existingEntities.add(existingEntity2);
Set<Entity> foundEntities = new HashSet<>();
Entity foundEntities1 = new Entity("Batman X. Superman", "fake type", 0, 17, "fake headline", 0, false, false, Engine.RULE);
Entity foundEntities2 = new Entity("Superman", "fake type", 10, 17, "fake headline", 0, false, false, Engine.RULE);
foundEntities.add(foundEntities1);
foundEntities.add(foundEntities2);
Entity foundEntitiesOverlap1 = new Entity("Batman X. Superman Y.", "fake type", 0, 17, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
Entity foundEntitiesOverlap2 = new Entity("Superman Y.", "fake type", 10, 20, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
Entity foundEntitiesSubset1 = new Entity("Batman X. Superman", "fake type", 0, 17, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
Entity foundEntitiesSubset2 = new Entity("Superman", "fake type", 10, 17, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
foundEntities.add(foundEntitiesOverlap1);
foundEntities.add(foundEntitiesOverlap2);
foundEntities.add(foundEntitiesSubset1);
foundEntities.add(foundEntitiesSubset2);
// Act
Set<Entity> result = EntitySearchUtils.findNonOverlappingMatchEntities(existingEntities, foundEntities);
// Assert
assertThat(result.size()).isEqualTo(0);
assertThat(result.size()).isEqualTo(2);
assertThat(result).containsExactlyInAnyOrder(foundEntitiesSubset1, foundEntitiesSubset2);
}
@@ -94,7 +94,7 @@ public class PdfSegmentationServiceTest {
ImageServiceResponse imageServiceResponse = objectMapper.readValue(responseJson.getInputStream(), ImageServiceResponse.class);
Map<Integer, List<PdfImage>> images = new HashMap<>();
imageServiceResponse.getImageMetadata().stream().forEach(imageMetadata -> {
imageServiceResponse.getData().stream().forEach(imageMetadata -> {
images.computeIfAbsent(imageMetadata.getPosition().getPageNumber() ,x -> new ArrayList<>())
.add(new PdfImage(new RedRectangle2D(imageMetadata.getPosition().getX1(), imageMetadata.getPosition().getY1(), imageMetadata.getGeometry().getWidth(), imageMetadata.getGeometry().getHeight()), ImageType.valueOf(imageMetadata.getClassification().getLabel().toUpperCase(Locale.ROOT)), imageMetadata.getPosition().getPageNumber()));
});
@@ -9,6 +9,7 @@ ribbon:
spring:
main:
allow-bean-definition-overriding: true
allow-circular-references: true # FIXME
processing.kafkastreams: false
@@ -17,7 +18,7 @@ platform.multi-tenancy:
redaction-service:
enable-image-classification: false
enable-entity-recognition: false
enable-entity-recognition: true
storage:
signer-type: 'AWSS3V4SignerType'
@@ -8620,4 +8620,6 @@ Doe
M. Mustermann
F. Lastname
Mustermann
Lastname
Lastname
Bojangles
Tambourine Man
@@ -3,3 +3,9 @@ Report Number: 33168
Page
Report Number: BFI0714
Tesh Consultants International
B. Rahim
C. J. Alfred
Naka-27 Aomachi, Nomi, Ishikawa 923-1101, Japan, JP
Özgür U. Reyhan
Sude Halide Nurullah
Xinyi Y. Tao
@@ -1,239 +0,0 @@
(Parent
ADME - Bioanalyses, Vergèze,
Aeration: Gentle
Andrews mean
Andrews pKi
BASF study code
Billington –
Bond elute
Brown Liquid
Brown Orange
Brown Solid
Brown disco
Brown discoloured
Brown fat
Brown liquid
Brown solid
Buehler (1980),
Buehler (1980).
Buehler 9
Buehler Test.
Buehler assay
Buehler test
Buehler)
Buehler-like :
Calandra lark
Cary, NC,
Chambersas for
Class 4
Class III’
Class III’)
Class method,
Class2 (effectively
ClassMethod) Vischim
Clay =
Cochran-Armitage Test.
Cochran-armitage test.
Dunnett 2
Dunnett's "t''
Dunnett's Test
Dunnett's multiple
Dunnett's t-test
Dunnett's test
Dunnett) **
Dunnett) Dose
Dunnett) Food
Dunnett) Lower
Dunnett, 1964)
Dunnett’s Multiple
Dunnett’s T
Dunnett’s Test)
Dunnett’s adjustment
Dunnett’s multiple
Dunnett’s post
Dunnett’s t-test)
Fine vacuolation
Fine white
Finewhite powder
Fischer 344
Fischer 344)
Fischer F344
Fischer rat
Fischer) Contaminants:
Fischer-344 acceptability
Fischer-344/
Fischer-344/DuCrj acceptability
Fischer344 rats.
Fischer344) :
Fischerrat embryo
Fischer’s exact
Fisher 344
Fisher Exact Test
Fisher Exact test
Fisher exact test
Fisher's Exact
Fisher-344 rat
Fisher344 (F344/
Fisher344 rat
Fisher344 rats
Fisher344 rats.
Fisher344 rats/
Fisher344) group
Fisher’s exact.
Freeman-Tukey transform
Gentle aeration
Grade 2:
Grade 3)
Grade 3:
Green
Green Alga
Green as
Green-, blue-,
GreenAlga, Selenastrum
GreenAlga.. Springborn
Gross External
Gross Necropsy
Gross and
Gross necropsies
Gross necropsy
Gross pathology
Gross pathology:
Hall Farm
Hall Farm)
HallFarm (396
Ham's F12
Ham’s F10
Hand-held
HarlanWinkelmann, Borchem,
Hill International,
Hill Top
Hill criteria
Hill, Bracknell,
HillTop Chamber,
Hillmodel was
Hill’s model
Japanese White
Jerneplaque assay
Kent. Blood
Klimisch score
Litchfield and Wilcoxon
Long term
Long-Term Toxicity
Long-term
Longbw/
Major Macroscopic findings
Major biliary
Major defects
Major deviations
Major fetal
Major metabolic
Major metabolites
Major route
Major treatment-related
Mallard (Anas
Mallard with
Manual-Hand held
Marsh Frog
Marsh harrier
Masonjars (500
Meier formula)
Meier survival
Miles anti-Canine
Miles anti-dog
Netherlands, 2011
Netherlands, published:
Netherlands. Report
Penn State
Porewater:
Rattray study
Read across
Reed Bunting
Reichert-Jung Cryo
RifconGmbH. Oxon
Ritz and
S.P.-U/
San Diego,
Shaw's Farm,
Sprague
Strain JapaneseWhite
Strong morphological
Weight -
Weight 2744
Weight Gain
Weight On
Weight Range
Weight and
Weight and length
Weight at
Weight gain
Weight loss
Weight of
Weight only
Weight range
Weight, age
Weight, feed
Weight-of-evidence approach
Weight:
Weight; Adult
Weight; Whole
WeightGain 0-1
WeightRange:
Weightat dosing:
Weightrange 200-250g.
White (Tif:
White 10
White 3
White Age
White Powder
White Strain
White blood
White cell
White crystalline
White guideline
White guinea-pigs
White hygroscopic
White powder
White solid
White stork
White swan
White to off-white
White wagtail
White, solid
WhitePowder Lot/
Whiteguideline :
Whitehygroscopic solid
Whitepowder Lot/
Whitepowder Stability
Whitesolid Batch
Whiteswan)
Whiteto off-white
Wildlife International specifications
Wildlife Internationalspecifications Water:
Williams E
Williams medium
Williams' medium
WilliamsE medium
Williams’ test
Wilson's method.
Wilson. All foetal
Wilson.All foetal
Wood pigeons
York.
Zeneca dossier);
Zenecadossier); see
green algae
CTL
No details reported
Not given
Not indicated
Not reported
Not reported.
Not stated
Syngenta
Syngenta AG
N/A
No details reported
Not available
Test facility
TBD
David Chubb
@@ -9,10 +9,9 @@ global Section section
//rule "0: Expand CBI Authors with firstname initials"
// when
// Section(matchesType("CBI_author") || matchesType("recommendation_CBI_author"))
// Section(matchesType("CBI_author"))
// then
// section.expandByRegEx("CBI_author", "(,? [A-Z]\\.?( ?[A-Z]\\.?)?( ?[A-Z]\\.?)?\\b\\.?)", false, 1);
// section.expandByRegEx("recommendation_CBI_author", "(,? [A-Z]\\.?( ?[A-Z]\\.?)?( ?[A-Z]\\.?)?\\b\\.?)", false, 1);
// end
@@ -20,22 +19,38 @@ rule "0: Add CBI_author from ai"
when
Section(aiMatchesType("CBI_author"))
then
section.addAiEntities("CBI_author", "recommendation_CBI_author");
section.addAiEntities("CBI_author", "CBI_author");
end
rule "0: Combine ai types CBI_author from ai"
when
Section(aiMatchesType("ORG"))
then
section.combineAiTypes("ORG", "STREET,POSTAL,COUNTRY,CARDINAL,CITY,STATE", 20, "recommendation_CBI_address", 3, false);
section.combineAiTypes("ORG", "STREET,POSTAL,COUNTRY,CARDINAL,CITY,STATE", 20, "CBI_address", 3, false);
end
rule "0: Expand CBI Authors with firstname initials"
when
Section(matchesType("CBI_author") || matchesType("recommendation_CBI_author"))
Section(matchesType("CBI_author"))
then
section.expandByRegEx("CBI_author", "(,? [A-Z]\\.?( ?[A-Z]\\.?)?( ?[A-Z]\\.?)?\\b\\.?)", false, 1, "[^\\s]+");
section.expandByRegEx("recommendation_CBI_author", "(,? [A-Z]\\.?( ?[A-Z]\\.?)?( ?[A-Z]\\.?)?\\b\\.?)", false, 1, "[^\\s]+");
end
rule "0: Expand CBI_author and PII matches with salutation prefix"
when
Section((matchesType("CBI_author") || matchesType("PII")) && (
searchText.contains("Mr")
|| searchText.contains("Mrs")
|| searchText.contains("Ms")
|| searchText.contains("Miss")
|| searchText.contains("Sir")
|| searchText.contains("Madam")
|| searchText.contains("Madame")
|| searchText.contains("Mme")
))
then
section.expandByPrefixRegEx("CBI_author", "\\b(Mrs?|Ms|Miss|Sir|Madame?|Mme)\\s?\\.?\\s*", false, 0);
section.expandByPrefixRegEx("PII", "\\b(Mrs?|Ms|Miss|Sir|Madame?|Mme)\\s?\\.?\\s*", false, 0);
end
@@ -0,0 +1 @@
{"importedRedactions":{"1":[{"id":"755273b5ddc6933eff7f6b6e055c803f","positions":[{"topLeft":{"x":275.0,"y":520.504},"width":55.675,"height":15.582,"page":1}]},{"id":"5e517d2c890272fc140578a26971b459","positions":[{"topLeft":{"x":164.0,"y":316.492},"width":50.7,"height":15.658,"page":1},{"topLeft":{"x":127.0,"y":302.613},"width":119.675,"height":14.902,"page":1},{"topLeft":{"x":81.0,"y":289.622},"width":210.025,"height":14.846,"page":1},{"topLeft":{"x":136.0,"y":275.912},"width":94.2,"height":13.033,"page":1},{"topLeft":{"x":158.0,"y":261.402},"width":52.793,"height":16.218,"page":1},{"topLeft":{"x":177.0,"y":247.413},"width":15.507,"height":16.148,"page":1}]}]}}
@@ -0,0 +1,872 @@
{
"result": {
"1": [
{
"value": "Lastname, J.",
"startOffset": 54,
"endOffset": 66,
"type": "CBI_author"
},
{
"value": "Doe, M.",
"startOffset": 67,
"endOffset": 74,
"type": "CBI_author"
},
{
"value": "Mustermann Lastname M.",
"startOffset": 75,
"endOffset": 97,
"type": "CBI_author"
},
{
"value": "Doe J. Mustermann M.",
"startOffset": 99,
"endOffset": 119,
"type": "CBI_author"
}
],
"2": [
{
"value": "Eikenboom Charalampos",
"startOffset": 148,
"endOffset": 169,
"type": "ORG"
},
{
"value": "Schenk Tanja Schmitt ←",
"startOffset": 170,
"endOffset": 192,
"type": "ORG"
}
],
"3": [
{
"value": "Rue Jean Baffier",
"startOffset": 214,
"endOffset": 230,
"type": "CBI_author"
},
{
"value": "7232",
"startOffset": 155,
"endOffset": 159,
"type": "POSTAL"
},
{
"value": "CX",
"startOffset": 160,
"endOffset": 162,
"type": "COUNTRY"
},
{
"value": "Warnsveld",
"startOffset": 163,
"endOffset": 172,
"type": "CITY"
},
{
"value": "Netherlands",
"startOffset": 174,
"endOffset": 185,
"type": "COUNTRY"
},
{
"value": "NL",
"startOffset": 187,
"endOffset": 189,
"type": "COUNTRY"
},
{
"value": "Institut Industries",
"startOffset": 190,
"endOffset": 209,
"type": "ORG"
},
{
"value": "33",
"startOffset": 211,
"endOffset": 213,
"type": "CARDINAL"
},
{
"value": "Rue Jean Baffier",
"startOffset": 214,
"endOffset": 230,
"type": "STREET"
},
{
"value": "18000",
"startOffset": 232,
"endOffset": 237,
"type": "CARDINAL"
},
{
"value": "Bourges",
"startOffset": 238,
"endOffset": 245,
"type": "CITY"
},
{
"value": "France",
"startOffset": 247,
"endOffset": 253,
"type": "COUNTRY"
},
{
"value": "18300",
"startOffset": 282,
"endOffset": 287,
"type": "CARDINAL"
},
{
"value": "Saint-Satur",
"startOffset": 288,
"endOffset": 299,
"type": "CITY"
},
{
"value": "France",
"startOffset": 301,
"endOffset": 307,
"type": "COUNTRY"
},
{
"value": "Lesdo Industries",
"startOffset": 312,
"endOffset": 328,
"type": "ORG"
},
{
"value": "Chäppelisträssli",
"startOffset": 330,
"endOffset": 346,
"type": "ORG"
},
{
"value": "6078",
"startOffset": 348,
"endOffset": 352,
"type": "POSTAL"
},
{
"value": "Lungern",
"startOffset": 353,
"endOffset": 360,
"type": "STREET"
},
{
"value": "Switzerland",
"startOffset": 362,
"endOffset": 373,
"type": "COUNTRY"
},
{
"value": "Shlissel'burgskaya Ulitsa",
"startOffset": 374,
"endOffset": 399,
"type": "ORG"
},
{
"value": "Nizhny Novgorod Oblast",
"startOffset": 401,
"endOffset": 423,
"type": "STREET"
},
{
"value": "Russia",
"startOffset": 425,
"endOffset": 431,
"type": "CITY"
},
{
"value": "603034",
"startOffset": 433,
"endOffset": 439,
"type": "POSTAL"
},
{
"value": "RU",
"startOffset": 441,
"endOffset": 443,
"type": "COUNTRY"
},
{
"value": "Karl Johans Gate",
"startOffset": 444,
"endOffset": 460,
"type": "STREET"
},
{
"value": "11",
"startOffset": 461,
"endOffset": 463,
"type": "CARDINAL"
},
{
"value": "0154",
"startOffset": 465,
"endOffset": 469,
"type": "POSTAL"
},
{
"value": "Oslo",
"startOffset": 470,
"endOffset": 474,
"type": "CITY"
},
{
"value": "Norway",
"startOffset": 476,
"endOffset": 482,
"type": "COUNTRY"
}
],
"4": [
{
"value": "Expand",
"startOffset": 67,
"endOffset": 73,
"type": "STATE"
},
{
"value": "Hint Clarissa",
"startOffset": 77,
"endOffset": 90,
"type": "ORG"
},
{
"value": "Dict",
"startOffset": 114,
"endOffset": 118,
"type": "ORG"
},
{
"value": "Authors-Dict",
"startOffset": 171,
"endOffset": 183,
"type": "ORG"
}
],
"6": [
{
"value": "Michael N.",
"startOffset": 7,
"endOffset": 17,
"type": "CBI_author"
},
{
"value": "Weyland Industries",
"startOffset": 76,
"endOffset": 94,
"type": "ORG"
}
],
"7": [
{
"value": "Funnarie B.",
"startOffset": 7,
"endOffset": 18,
"type": "CBI_author"
},
{
"value": "Authentic Diagnostics",
"startOffset": 73,
"endOffset": 94,
"type": "ORG"
}
],
"8": [
{
"value": "Feuer A.",
"startOffset": 6,
"endOffset": 14,
"type": "CBI_author"
},
{
"value": "Tyrell Corporation",
"startOffset": 74,
"endOffset": 92,
"type": "ORG"
}
],
"12": [
{
"value": "Melanie",
"startOffset": 292,
"endOffset": 299,
"type": "CBI_author"
}
],
"13": [
{
"value": "Stark Industries",
"startOffset": 184,
"endOffset": 200,
"type": "ORG"
}
],
"14": [
{
"value": "Omni Consumer Products Do",
"startOffset": 197,
"endOffset": 222,
"type": "ORG"
}
],
"15": [
{
"value": "Omni Consumer Products Do",
"startOffset": 122,
"endOffset": 147,
"type": "ORG"
}
],
"16": [
{
"value": "Asya Lyon",
"startOffset": 253,
"endOffset": 262,
"type": "CBI_author"
},
{
"value": "Carina Madsen",
"startOffset": 264,
"endOffset": 277,
"type": "CBI_author"
},
{
"value": "Alexandra Häusler",
"startOffset": 279,
"endOffset": 296,
"type": "CBI_author"
},
{
"value": "Hanke Mendel",
"startOffset": 298,
"endOffset": 310,
"type": "CBI_author"
},
{
"value": "Kwok, Jun K.",
"startOffset": 444,
"endOffset": 456,
"type": "CBI_author"
},
{
"value": "Tu Wong",
"startOffset": 458,
"endOffset": 465,
"type": "CBI_author"
},
{
"value": "Qiang Suen",
"startOffset": 467,
"endOffset": 477,
"type": "CBI_author"
},
{
"value": "Zhou Mah",
"startOffset": 479,
"endOffset": 487,
"type": "CBI_author"
},
{
"value": "Lei W. Huang",
"startOffset": 499,
"endOffset": 511,
"type": "CBI_author"
},
{
"value": "Ru X.",
"startOffset": 513,
"endOffset": 518,
"type": "CBI_author"
},
{
"value": "Oxford University Press",
"startOffset": 166,
"endOffset": 189,
"type": "ORG"
},
{
"value": "Iakovos Geiger",
"startOffset": 222,
"endOffset": 236,
"type": "ORG"
},
{
"value": "Julian Ritter",
"startOffset": 238,
"endOffset": 251,
"type": "CITY"
},
{
"value": "Asya Lyon",
"startOffset": 253,
"endOffset": 262,
"type": "ORG"
},
{
"value": "Carina Madsen",
"startOffset": 264,
"endOffset": 277,
"type": "CITY"
},
{
"value": "Alexandra Häusler",
"startOffset": 279,
"endOffset": 296,
"type": "ORG"
},
{
"value": "Hanke Mendel",
"startOffset": 298,
"endOffset": 310,
"type": "ORG"
},
{
"value": "Ranya",
"startOffset": 312,
"endOffset": 317,
"type": "COUNTRY"
},
{
"value": "Eikenboom",
"startOffset": 318,
"endOffset": 327,
"type": "ORG"
},
{
"value": "Min Kwok",
"startOffset": 440,
"endOffset": 448,
"type": "ORG"
},
{
"value": "Qiang Suen",
"startOffset": 467,
"endOffset": 477,
"type": "CITY"
},
{
"value": "Zhou Mah",
"startOffset": 479,
"endOffset": 487,
"type": "ORG"
},
{
"value": "Ning Liu",
"startOffset": 489,
"endOffset": 497,
"type": "STREET"
},
{
"value": "Lei W. Huang, Ru X. Wu",
"startOffset": 499,
"endOffset": 521,
"type": "ORG"
}
],
"17": [
{
"value": "Nurullah Özgür",
"startOffset": 210,
"endOffset": 224,
"type": "CBI_author"
},
{
"value": "Reyhan B.",
"startOffset": 228,
"endOffset": 237,
"type": "CBI_author"
},
{
"value": "Alfred Xinyi Y.",
"startOffset": 250,
"endOffset": 265,
"type": "CBI_author"
},
{
"value": "Redacted",
"startOffset": 12,
"endOffset": 20,
"type": "ORG"
},
{
"value": "Aomachi",
"startOffset": 154,
"endOffset": 161,
"type": "ORG"
},
{
"value": "Nomi",
"startOffset": 163,
"endOffset": 167,
"type": "ORG"
},
{
"value": "Ishikawa",
"startOffset": 169,
"endOffset": 177,
"type": "CITY"
},
{
"value": "923-1101",
"startOffset": 178,
"endOffset": 186,
"type": "CARDINAL"
},
{
"value": "Japan",
"startOffset": 188,
"endOffset": 193,
"type": "COUNTRY"
},
{
"value": "JP",
"startOffset": 195,
"endOffset": 197,
"type": "COUNTRY"
},
{
"value": "Sude Halide Nurullah Özgür U. Reyhan B. Rahim C. J. Alfred Xinyi Y. Tao Clara Siegfried",
"startOffset": 198,
"endOffset": 285,
"type": "ORG"
},
{
"value": "Dict",
"startOffset": 301,
"endOffset": 305,
"type": "ORG"
}
],
"18": [
{
"value": "Redact Emails",
"startOffset": 12,
"endOffset": 25,
"type": "ORG"
}
],
"19": [
{
"value": "Central Research Industry",
"startOffset": 274,
"endOffset": 299,
"type": "ORG"
},
{
"value": "Maximiliam Schmitt",
"startOffset": 530,
"endOffset": 548,
"type": "ORG"
},
{
"value": "European Central Institute",
"startOffset": 727,
"endOffset": 753,
"type": "ORG"
},
{
"value": "Emilia Lockhart Alternative",
"startOffset": 775,
"endOffset": 802,
"type": "ORG"
},
{
"value": "Cyberdyne Systems Tower",
"startOffset": 812,
"endOffset": 835,
"type": "ORG"
},
{
"value": "121a",
"startOffset": 844,
"endOffset": 848,
"type": "CARDINAL"
},
{
"value": "Hong Kong",
"startOffset": 849,
"endOffset": 858,
"type": "COUNTRY"
},
{
"value": "BT",
"startOffset": 860,
"endOffset": 862,
"type": "COUNTRY"
}
],
"21": [
{
"value": "Central Research Industry",
"startOffset": 270,
"endOffset": 295,
"type": "ORG"
},
{
"value": "Maximiliam Schmitt",
"startOffset": 526,
"endOffset": 544,
"type": "ORG"
},
{
"value": "European Central Institute",
"startOffset": 723,
"endOffset": 749,
"type": "ORG"
},
{
"value": "Emilia Lockhart Alternative",
"startOffset": 771,
"endOffset": 798,
"type": "ORG"
},
{
"value": "Cyberdyne Systems Tower",
"startOffset": 808,
"endOffset": 831,
"type": "ORG"
},
{
"value": "121a",
"startOffset": 840,
"endOffset": 844,
"type": "CARDINAL"
},
{
"value": "Hong Kong",
"startOffset": 845,
"endOffset": 854,
"type": "COUNTRY"
},
{
"value": "BT",
"startOffset": 856,
"endOffset": 858,
"type": "COUNTRY"
}
],
"22": [
{
"value": "Riddley",
"startOffset": 236,
"endOffset": 243,
"type": "ORG"
},
{
"value": "359-21",
"startOffset": 259,
"endOffset": 265,
"type": "CARDINAL"
},
{
"value": "Huam-dong",
"startOffset": 266,
"endOffset": 275,
"type": "STATE"
},
{
"value": "Yongsan-gu",
"startOffset": 276,
"endOffset": 286,
"type": "CITY"
},
{
"value": "Seoul",
"startOffset": 287,
"endOffset": 292,
"type": "CITY"
},
{
"value": "South Korea Phone",
"startOffset": 294,
"endOffset": 311,
"type": "COUNTRY"
},
{
"value": "Soylent Corporation",
"startOffset": 500,
"endOffset": 519,
"type": "ORG"
}
],
"23": [
{
"value": "Umbrella Corporation",
"startOffset": 208,
"endOffset": 228,
"type": "ORG"
},
{
"value": "Jill",
"startOffset": 238,
"endOffset": 242,
"type": "ORG"
},
{
"value": "359-21",
"startOffset": 262,
"endOffset": 268,
"type": "CARDINAL"
},
{
"value": "Huam-dong",
"startOffset": 269,
"endOffset": 278,
"type": "STATE"
},
{
"value": "Yongsan-gu",
"startOffset": 279,
"endOffset": 289,
"type": "CITY"
},
{
"value": "Seoul",
"startOffset": 290,
"endOffset": 295,
"type": "CITY"
},
{
"value": "South Korea Phone",
"startOffset": 297,
"endOffset": 314,
"type": "COUNTRY"
}
],
"26": [
{
"value": "Umbrella Corporation",
"startOffset": 209,
"endOffset": 229,
"type": "ORG"
}
],
"28": [
{
"value": "Purity Hint",
"startOffset": 9,
"endOffset": 20,
"type": "ORG"
},
{
"value": "Hint",
"startOffset": 35,
"endOffset": 39,
"type": "ORG"
}
],
"29": [
{
"value": "Ignore",
"startOffset": 9,
"endOffset": 15,
"type": "STREET"
}
],
"30": [
{
"value": "Redact Signatures Redact",
"startOffset": 12,
"endOffset": 36,
"type": "ORG"
},
{
"value": "Dilara",
"startOffset": 139,
"endOffset": 145,
"type": "ORG"
},
{
"value": "Tobias Müller",
"startOffset": 197,
"endOffset": 210,
"type": "ORG"
}
],
"31": [
{
"value": "Redact Logo Redact",
"startOffset": 9,
"endOffset": 27,
"type": "ORG"
}
],
"41": [
{
"value": "Page-Footer",
"startOffset": 10,
"endOffset": 21,
"type": "STREET"
}
],
"42": [
{
"value": "Page-Footer",
"startOffset": 10,
"endOffset": 21,
"type": "STREET"
}
],
"43": [
{
"value": "Page-Footer",
"startOffset": 10,
"endOffset": 21,
"type": "STREET"
}
],
"44": [
{
"value": "Page-Footer",
"startOffset": 10,
"endOffset": 21,
"type": "STREET"
}
],
"45": [
{
"value": "Page-Footer",
"startOffset": 10,
"endOffset": 21,
"type": "STREET"
}
],
"46": [
{
"value": "Page-Footer",
"startOffset": 10,
"endOffset": 21,
"type": "STREET"
}
],
"47": [
{
"value": "Page-Footer",
"startOffset": 10,
"endOffset": 21,
"type": "STREET"
}
],
"48": [
{
"value": "Page-Footer",
"startOffset": 10,
"endOffset": 21,
"type": "STREET"
}
],
"49": [
{
"value": "Page-Footer",
"startOffset": 10,
"endOffset": 21,
"type": "STREET"
}
]
}
}
@@ -1,7 +1,7 @@
{
"dossierId": "f889853e-4bf8-49a9-aae5-c38605c6ef40",
"fileId": "22ef63e29bb2a27db8497272336f6b32",
"imageMetadata": [
"data": [
{
"classification": {
"probabilities": {
@@ -0,0 +1,12 @@
{
"result": {
"1": [
{
"value": "Mannheim",
"startOffset": 0,
"endOffset": 8,
"type": "CITY"
}
]
}
}
@@ -0,0 +1,12 @@
{
"defaultColor": "#9398a0",
"requestAdd": "#04b093",
"requestRemove": "#04b093",
"notRedacted": "#c498fa",
"analysisColor": "#dd4d50",
"updatedColor": "#fdbd00",
"dictionaryRequestColor": "#5b97db",
"manualRedactionColor": "#9398a0",
"previewColor": "#9398a0",
"ignoredHintColor": "#e7d4ff"
}
@@ -0,0 +1,21 @@
5 Batch
Author
Batch Analysis
Certificate of Analysis
Chemical Investigator
Contributors
Five Batch
GLP Certificate
Pathologist
Performing Laboratory
Principle Investigator
Quality Assurance
References
Report of Peer Review
Study Director
Study Monitor
Test Facility
Test Site
Trial Site
altitude
latitude
@@ -0,0 +1,234 @@
. Comparative Biochemistry and Physiology Part C: Toxicology & Pharmacology C Toxicology & Pharmacology
. J. Exp. Zool
. Lewis Publ., Boca Raton,
1944; 82:377-390
7th ed.; The Iowa State University Press: Ames, IA
7th ed.; The Joint Nature ConservationIowa State University Press: Ames, IAReproduction, Fertility and Development 2
ATLA
Academic Press
Advances in
Ageing Dev.
Agromedicine
Am J Epidemiol
Am J Ind Med
Am J Med Genet A
Am J Respir Crit Care Med
American Society for Testing and Materials, Philadelphia, Pennsylvania.
Anal Chem.
Anal, Chem.,
Animal Reproduction Science
Annals of
Annals of Maths Stats
Apidologie
Aq. Toxicol.
Aquatic Ecology
Aquatic Toxicology
Aquatic toxicology
Arch Environ Contam Toxicol
Arch Toxicol
Arch Toxicol.
Archives of Environmental Contamination and Toxicology
Archives of Toxicology
Australasian Journal of Ecotoxicology
BioFactors
Biomedical chromatography
Biometrics
Biometrika
Birth Defects Res. B. Dev. Reprod. Toxicol
Birth Defects Res. B. Dev. Reprod. Toxicol.
Br Med J
British Health and Safety Executive, Chemicals Regulation Directorate Pesticides
Brown Company Publishers, Dubuque, Iowa
Bull Environ Contam Toxicol.
Bull. Environ. Contam. Toxicol
Bulletin
Bulletin of Environmental Contamination and Toxicology
CHEMOSPHERE
Cahiers Agricultures
Cancer Letters
Cancer Res
Carcinogenesis
Chem. Res. Toxicol.
Chem. Res. in Toxicol.
Chemosphere
Chinese Journal of Chromatography
Clin Anat.
Comparative Biochemistry and Physiology Part C: Toxicology & Pharmacology C Toxicology & Pharmacology
Crit Rev Toxicol
Critical Reviews in Toxicology
Curr. Med. Chem.
Current approaches in the statistical analysis of ecotoxicity data: guidance to application
DEFRA
Deutsche Lebensmittel-Rundschau
Deutsche Lebensmittel-Rundschau.
Dongbei Nongye Daxue Xuebao
Dual-Gold
EFSA Journal
Ecological Research
Ecotoxicol. Environ. Safety
Ecotoxicology and Environmental Safety
Endocrinology
Env. Mol. Mutagen
Environ Health Perspect
Environ Health Perspect.
Environ Health Perspect. 1
Environ Mutat
Environ Sci Pollut Res
Environ Sci Technol
Environ Toxicol.
Environ and Molecular Mutagenesis
Environ. Health Perspec.
Environ. Health Perspect.
Environ. Sci. Technol
Environ. Sci. Technol.
Environment International
Environmental & Molecular Mutagenesis
Environmental Health
Environmental Health Perspectives
Environmental Monitoring and Assessment
Environmental Pollution
Environmental Protection Agency Federal Register
Environmental Science & Technology
Environmental Science and Technology
Environmental Science and Technology.
Environmental Toxicology and Chemistry
Environmental monitoring and assessment
Environmental toxicology and chemistry
Essays in Honor of Harold Hotelling
Eur Respir
Experimental Cel] Research
FUNDAMENTAL AND APPLIED TOXICOLOGY
Fischer, Jena
Fish Sci
Food Cosmet. Toxicol.
Franckh, Stuttgar
Franckh, Stuttgart
Free Rad. Res
Fundamentals of Applied Toxicology
Fundamentals of Applied Toxicology1988
Gen. Comp. Endocrinol
Gen. Comp.Endocrinol
Gen.Com. Endocrinol.
General and Comparative Endocrinology
Greenhouse Pest Management
Gustav Fischer Verlag, Stuttgart
Handbook of water purity and quality.
Health and Safety Executive, Chemi-cals Regulation Directorate Pesticides
Herpetologica
High-Throughput Screening Methods in Toxicity Testing
High-Throughput Screening Methods in Toxicity Testing. Hoboken, NJ: John Wiley & Sons
ISBN
ISSN
ISSN/ISBN
Ibis
Int Arch Occup Environ Health
Int J Cancer
Irish Journal of Agricultural and Food Research
Ist Annual Symposium on Aquatic Toxicology ASTM,
J Econom
J Endocrinol
J LARGILLIERE
J Radiat Res
J Steroid Biochem Mol Biol
J. Invest. Derm
Joint Nature Conservation Committee
Journal Pharmacology Experimental Therapeutics
Journal of
Journal of Animal Ecology
Journal of Applied Ecology
Journal of Applied Entomology
Journal of Economic Entomology
Journal of Environmental Science and Health
Journal of Experimental Biology and Ecology
Journal of Hazardous Materials
Journal of Microbiology
Journal of Toxicology and
Journal of agricultural and food chemistry
Journal of the American College of Toxicology
Journal of the Royal Statistical Society,
Leaflet
Limnologica
Marine Enironmental Research
Marine Environmental Research
Marine Pollution Bulletin
Mass Spectrometry
Medical Journal
Middle Atlantic Reproduction and Teratology Association
Mol Mutagen
Mol. Cell. Endocrinol.
Mutagenesis
Mutat Res
Mutation Research
National Academy of Science,
Nature
Neurotoxicity research
Nonparametric Statistics for the Behavioral Sciences
OECD Guideline for the testing of chemicals
OECD Guidelines for Testing of Chemicals
OECD Guidelines for testing of chemicals.
OECD Principles of Good Laboratory Practice and Compliance Monitoring
OECD Series on Testing Assessment
Occup Environ Med
Occupational and Environmental Medicine
Office of Prevention, Pesticides and Toxic Substances
Official Journal of the European Communities
Oxford University Press
PLoS ONE
Pediat. Res
Pesticide Biochemistry and Physiology
Physiol Chem
Planta daninha
Press
Principles and Procedures of Statistics
Principles and Procedures of Statistics, A Biometrical Approach
Proc Natl Acad Sci USA
Psychopharmacologia
Publication
Publications Office of the European Union, Luxembourg
Published: Y
Publisher Gustav Fischer, Stuttgart
Raven press,
Reg. Tox. Pharmacol
Regul. Toxicol. Pharmacol
Regulatory Toxicology and Pharmacology
Reproductive BioMedicine Online
Reproductive Toxicology
Schweizerbart’sche Verlagsbuchhandlung
Science of the Total Environment
Scientific Reports
Stain Technol
Superorder Monogonnata
Swiss Ordinance relating to Good Laboratory Practice
Teratology
The American Statistician
The Chemical Society,
The Inland Waters Volume
The Royal Society for the Protection of Birds
Tidepool Scientific Software, Mckinleyville, CA, USA
Toxicol Chem
Toxicol Pathol.
Toxicol Sci
Toxicol Sci.
Toxicol Sci. 1
Toxicol in Vitro
Toxicol. Sci,
Toxicol. Sci.
Toxicol. in Vitro
Toxicologic Pathology
Toxicological Sciences
Toxicological and Environmental Chemistry
Toxicology Letters
Toxicology and Applied Pharmacology
Toxicology and Industrial Health
Toxicology in Vitro
Trends in Neurosciences
Umweltbundesamt Development & Research Project
WATER CHLORINATION:CHEM, ENVIRON. IMPACT HEALTH EFF., PROC. CONF
Water Res.
Workshop
World Journal of Pharmaceutical Research
XIII Symposium Pesticide Chemistry
edition
http://www.iobc-wprs.org
ournal of the Royal Statistical Society
paper was presented
@@ -0,0 +1,22 @@
{
"dossierTemplateId": "b959cf8a-e8f8-470b-aad4-6fc602ef110b",
"name": "EFSA sanitisation GFL v1",
"description": "Redact all authors, laboratory addresses and other geolocation.",
"dateAdded": "2021-01-21T14:25:35Z",
"dateModified": "2021-07-19T08:09:27Z",
"createdBy": "e3aed6ea-a9e5-4f3f-bde7-6f0fe0c4362c",
"modifiedBy": "e3aed6ea-a9e5-4f3f-bde7-6f0fe0c4362c",
"validFrom": null,
"validTo": null,
"downloadFileTypes": [
"PREVIEW",
"REDACTED",
"DELTA_PREVIEW"
],
"reportTypes": [
"EXCEL_MULTI_FILE",
"WORD_SINGLE_FILE_APPENDIX_A1_TEMPLATE",
"WORD_SINGLE_FILE_APPENDIX_A2_TEMPLATE"
],
"dossierTemplateStatus": "ACTIVE"
}
@@ -0,0 +1,47 @@
[
{
"name": "1.1 personal data (incl. geolocation); Article 39(e)(3)",
"description": "(Regulations (EU) 2016/679 and (EU) 2018/1725 shall apply to the processing of personal data carried out pursuant to this Regulation. Any personal data made public pursuant to Article 38 of this Regulation and this Article shall only be used to ensure the transparency of the risk assessment under this Regulation and shall not be further processed in a manner that is incompatible with these purposes, in accordance with point (b) of Article 5(1) of Regulation (EU) 2016/679 and point (b) of Article 4(1) of Regulation (EU) 2018/1725, as the case may be)",
"reason": "Article 39(e)(3) of Regulation (EC) No 178/2002"
},
{
"name": "1.2 vertebrate study related personal data (incl. geolocation); Article 39(e)(2)",
"description": "personal data (names and addresses) of individuals involved in testing on vertebrate studies or in obtaining toxicological information",
"reason": "Article 39(e)(2) of Regulation (EC) No 178/2002"
},
{
"name": "2. manufacturing or production process",
"description": "the manufacturing or production process, including the method and innovative aspects thereof, as well as other technical and industrial specifications inherent to that process or method, except for information which is relevant to the assessment of safety",
"reason": "Article 63(2)(a) of Regulation (EC) No 1107/2009 (making reference to Article 39 of Regulation EC No 178/2002)"
},
{
"name": "3. links between a producer and applicant",
"description": "commercial links between a producer or importer and the applicant or the authorisation holder, where applicable",
"reason": "Article 63(2)(a) of Regulation (EC) No 1107/2009 (making reference to Article 39 of Regulation EC No 178/2002)"
},
{
"name": "4. commercial information",
"description": "commercial information revealing sourcing, market shares or business strategy of the applicant",
"reason": "Article 63(2)(a) of Regulation (EC) No 1107/2009 (making reference to Article 39 of Regulation EC No 178/2002)"
},
{
"name": "5. quantitative composition",
"description": "quantitative composition of the subject matter of the request, except for information which is relevant to the assessment of safety",
"reason": "Article 63(2)(a) of Regulation (EC) No 1107/2009 (making reference to Article 39 of Regulation EC No 178/2002)"
},
{
"name": "6. specification of impurity",
"description": "the specification of impurity of the active substance and the related methods of analysis for impurities in the active substance as manufactured, except for the impurities that are considered to be toxicologically, ecotoxicologically or environmentally relevant and the related methods of analysis for such impurities",
"reason": "Article 63(2)(b) of Regulation (EC) No 1107/2009"
},
{
"name": "7. results of production batches",
"description": "results of production batches of the active substance including impurities",
"reason": "Article 63(2)(c) of Regulation (EC) No 1107/2009"
},
{
"name": "8. composition of a plant protection product",
"description": "information on the complete composition of a plant protection product",
"reason": "Article 63(2)(d) of Regulation (EC) No 1107/2009"
}
]
@@ -0,0 +1,480 @@
package drools
import com.iqser.red.service.redaction.v1.server.redaction.model.Section
global Section section
// --------------------------------------- CBI rules -------------------------------------------------------------------
rule "0: Add CBI_author from ai"
when
Section(aiMatchesType("CBI_author"))
then
section.addAiEntities("CBI_author", "CBI_author");
end
rule "0: Combine ai types CBI_author from ai"
when
Section(aiMatchesType("ORG"))
then
section.combineAiTypes("ORG", "STREET,POSTAL,COUNTRY,CARDINAL,CITY,STATE", 20, "CBI_address", 3, false);
end
rule "1: Redact CBI Authors (Non vertebrate study)"
when
Section(!fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && matchesType("CBI_author"))
then
section.redact("CBI_author", 1, "Author found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
end
rule "2: Redact CBI Authors (Vertebrate study)"
when
Section(fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && matchesType("CBI_author"))
then
section.redact("CBI_author", 2, "Author found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
end
rule "3: Redact not CBI Address (Non vertebrate study)"
when
Section(!fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && matchesType("CBI_address"))
then
section.redactNot("CBI_address", 3, "Address found for non vertebrate study");
section.ignoreRecommendations("CBI_address");
end
rule "4: Redact CBI Address (Vertebrate study)"
when
Section(fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && matchesType("CBI_address"))
then
section.redact("CBI_address", 4, "Address found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
end
rule "5: Do not redact genitive CBI_author"
when
Section(matchesType("CBI_author"))
then
section.expandToFalsePositiveByRegEx("CBI_author", "['’’'ʼˈ´`‘′ʻ’']s", false, 0);
end
rule "6: Redact Author(s) cells in Tables with Author(s) header (Non vertebrate study)"
when
Section(!fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && hasTableHeader("Author(s)") && !hasTableHeader("Vertebrate study Y/N"))
then
section.redactCell("Author(s)", 6, "CBI_author", false, "Author found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
end
rule "7: Redact Author(s) cells in Tables with Author(s) header (Vertebrate study)"
when
Section(fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && hasTableHeader("Author(s)") && !hasTableHeader("Vertebrate study Y/N"))
then
section.redactCell("Author(s)", 7, "CBI_author", false, "Author found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
end
rule "8: Redact Author cells in Tables with Author header (Non vertebrate study)"
when
Section(!fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && hasTableHeader("Author") && !hasTableHeader("Vertebrate study Y/N"))
then
section.redactCell("Author", 8, "CBI_author", false, "Author found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
end
rule "9: Redact Author cells in Tables with Author header (Vertebrate study)"
when
Section(fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && hasTableHeader("Author") && !hasTableHeader("Vertebrate study Y/N"))
then
section.redactCell("Author", 9, "CBI_author", false, "Author found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
end
rule "10: Redact and recommand Authors in Tables with Vertebrate study Y/N header (Non vertebrate study)"
when
Section(!fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && (rowEquals("Vertebrate study Y/N", "Y") || rowEquals("Vertebrate study Y/N", "Yes") || rowEquals("Vertebrate study Y/N", "N") || rowEquals("Vertebrate study Y/N", "No")))
then
section.redactCell("Author(s)", 10, "CBI_author", true, "Author found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
end
rule "11: Redact and recommand Authors in Tables with Vertebrate study Y/N header (Vertebrate study)"
when
Section(fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && (rowEquals("Vertebrate study Y/N", "Y") || rowEquals("Vertebrate study Y/N", "Yes") || rowEquals("Vertebrate study Y/N", "N") || rowEquals("Vertebrate study Y/N", "No")))
then
section.redactCell("Author(s)", 11, "CBI_author", true, "Author found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
end
rule "13: Redact addresses that start with BL or CTL"
when
Section(searchText.contains("BL") || searchText.contains("CT"))
then
section.redactNotAndRecommendByRegEx("((\\b((([Cc]T(([1ILli\\/])| L|~P))|(BL))[\\. ]?([\\dA-Ziltphz~\\/.:!]| ?[\\(',][Ppi](\\(e)?|([\\(-?']\\/))+( ?[\\(\\/\\dA-Znasieg]+)?)\\b( ?\\/? ?\\d+)?)|(\\bCT[L1i]\\b))", true, 0, "CBI_address", 13, "Laboratory for vertebrate studies found");
end
rule "14: Redact and add recommendation for et al. author (Non vertebrate study)"
when
Section(!fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && searchText.contains("et al"))
then
section.redactAndRecommendByRegEx("\\b([A-ZÄÖÜ][^\\s\\.,]+( [A-ZÄÖÜ]{1,2}\\.?)?( ?[A-ZÄÖÜ]\\.?)?) et al\\.?", false, 1, "CBI_author", 14, "Author found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
end
rule "15: Redact and add recommendation for et al. author (Vertebrate study)"
when
Section(fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && searchText.contains("et al"))
then
section.redactAndRecommendByRegEx("\\b([A-ZÄÖÜ][^\\s\\.,]+( [A-ZÄÖÜ]{1,2}\\.?)?( ?[A-ZÄÖÜ]\\.?)?) et al\\.?", false, 1, "CBI_author", 15, "Author found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
end
rule "16: Add recommendation for Addresses in Test Organism sections"
when
Section(fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && searchText.contains("Species:") && searchText.contains("Source:"))
then
section.recommendLineAfter("Source:", "CBI_address");
end
rule "17: Add recommendation for Addresses in Test Animals sections"
when
Section(fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && searchText.contains("Species") && searchText.contains("Source"))
then
section.recommendLineAfter("Source", "CBI_address");
end
rule "18: Do not redact Names and Addresses if Published Information found"
when
Section(matchesType("published_information"))
then
section.redactNotAndReference("CBI_author","published_information", 18, "Published Information found");
section.redactNotAndReference("CBI_address","published_information", 18, "Published Information found");
end
// --------------------------------------- PII rules -------------------------------------------------------------------
rule "19: Redacted PII Personal Identification Information (Non vertebrate study)"
when
Section(!fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && matchesType("PII"))
then
section.redact("PII", 19, "PII (Personal Identification Information) found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
end
rule "20: Redacted PII Personal Identification Information (Vertebrate study)"
when
Section(fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && matchesType("PII"))
then
section.redact("PII", 20, "PII (Personal Identification Information) found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
end
rule "21: Redact Emails by RegEx (Non vertebrate study)"
when
Section(!fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && searchText.contains("@"))
then
section.redactByRegEx("\\b([A-Za-z0-9._%+\\-]+@[A-Za-z0-9.\\-]+\\.[A-Za-z\\-]{1,23}[A-Za-z])\\b", true, 1, "PII", 21, "PII (Personal Identification Information) found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
end
rule "22: Redact Emails by RegEx (Vertebrate study)"
when
Section(fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && searchText.contains("@"))
then
section.redactByRegEx("\\b([A-Za-z0-9._%+\\-]+@[A-Za-z0-9.\\-]+\\.[A-Za-z\\-]{1,23}[A-Za-z])\\b", true, 1, "PII", 22, "PII (Personal Identification Information) found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
end
rule "23: Redact telephone numbers by RegEx (Non vertebrate study)"
when
Section(!fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && containsRegEx("[+]\\d{2,}", true))
then
section.redactByRegEx("((([+]\\d{2,3} (\\d{7,12})\\b)|([+]\\d{2,3}(\\d{3,12})\\b|[+]\\d{2,3}([ -]\\(?\\d{2,6}\\)?){2,4})|[+]\\d{2,3} ?((\\d{2,6}\\)?)([ -]\\d{2,6}){1,4}))(-\\d{1,3})?\\b)", true, 1, "PII", 23, "PII (Personal Identification Information) found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
end
rule "24: Redact telephone numbers by RegEx (Vertebrate study)"
when
Section(fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && containsRegEx("[+]\\d{2,}", true))
then
section.redactByRegEx("((([+]\\d{2,3} (\\d{7,12})\\b)|([+]\\d{2,3}(\\d{3,12})\\b|[+]\\d{2,3}([ -]\\(?\\d{2,6}\\)?){2,4})|[+]\\d{2,3} ?((\\d{2,6}\\)?)([ -]\\d{2,6}){1,4}))(-\\d{1,3})?\\b)", true, 1, "PII", 24, "PII (Personal Identification Information) found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
end
rule "25: Recommend telephone numbers by RegEx"
when
Section(containsRegEx("\\d{3,}", true) || containsRegEx("[+]\\d{2,}", true))
then
section.addRecommendationByRegEx("([+]\\d{2,3} (\\d{7,12})\\b|((([+]\\d{2,3}(\\d{3,12})\\b|[+]\\d{2,3}([ -]\\(?\\d{2,6}\\)?){2,4})|(\\(?\\b(\\d{2,6}\\)?)([ -]\\d{2,6}){1,4}))(-\\d{1,3})?\\b))", true, 1, "PII");
end
rule "26: Redact contact information (Non vertebrate study)"
when
Section(!fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && (text.contains("Contact point:")
|| text.contains("Phone:")
|| text.contains("Fax:")
|| text.contains("Tel.:")
|| text.contains("Tel:")
|| text.contains("E-mail:")
|| text.contains("Email:")
|| text.contains("e-mail:")
|| text.contains("E-mail address:")
|| text.contains("Alternative contact:")
|| text.contains("Telephone number:")
|| text.contains("Telephone No:")
|| text.contains("Fax number:")
|| text.contains("Telephone:")
|| text.contains("Phone No.")
|| text.contains("European contact:")))
then
section.redactLineAfter("Contact point:", "PII", 26, true, "Contact information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("Phone:", "PII", 26, true, "Contact information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("Fax:", "PII", 26, true, "Contact information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("Tel.:", "PII", 26, true, "Contact information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("Tel:", "PII", 26, true, "Contact information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("E-mail:", "PII", 26, true, "Contact information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("Email:", "PII", 26, true, "Contact information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("e-mail:", "PII", 26, true, "Contact information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("E-mail address:", "PII", 26, true, "Contact information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("Contact:", "PII", 26, true, "Contact information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("Alternative contact:", "PII", 26, true, "Contact information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("Telephone number:", "PII", 26, true, "Contact information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("Telephone No:", "PII", 26, true, "Contact information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("Fax number:", "PII", 26, true, "Contact information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("Telephone:", "PII", 26, true, "Contact information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("Phone No.", "PII", 26, true, "Contact information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactBetween("No:", "Fax", "PII", 26, true, "Contact information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactBetween("Contact:", "Tel.:", "PII", 26, true, "Contact information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("European contact:", "PII", 26, true, "Contact information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
end
rule "27: Redact contact information (Vertebrate study)"
when
Section(fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && (text.contains("Contact point:")
|| text.contains("Phone:")
|| text.contains("Fax:")
|| text.contains("Tel.:")
|| text.contains("Tel:")
|| text.contains("E-mail:")
|| text.contains("Email:")
|| text.contains("e-mail:")
|| text.contains("E-mail address:")
|| text.contains("Alternative contact:")
|| text.contains("Telephone number:")
|| text.contains("Telephone No:")
|| text.contains("Fax number:")
|| text.contains("Telephone:")
|| text.contains("Phone No.")
|| text.contains("European contact:")))
then
section.redactLineAfter("Contact point:", "PII", 27, true, "Contact information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Phone:", "PII", 27, true, "Contact information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Fax:", "PII", 27, true, "Contact information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Tel.:", "PII", 27, true, "Contact information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Tel:", "PII", 27, true, "Contact information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("E-mail:", "PII", 27, true, "Contact information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Email:", "PII", 27, true, "Contact information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("e-mail:", "PII", 27, true, "Contact information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("E-mail address:", "PII", 27, true, "Contact information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Contact:", "PII", 27, true, "Contact information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Alternative contact:", "PII", 27, true, "Contact information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Telephone number:", "PII", 27, true, "Contact information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Telephone No:", "PII", 27, true, "Contact information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Fax number:", "PII", 27, true, "Contact information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Telephone:", "PII", 27, true, "Contact information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Phone No.", "PII", 27, true, "Contact information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactBetween("No:", "Fax", "PII", 27, true, "Contact information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactBetween("Contact:", "Tel.:", "PII", 27, true, "Contact information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("European contact:", "PII", 27, true, "Contact information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
end
rule "28: Redact contact information if applicant is found (Non vertebrate study)"
when
Section(!fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && (headlineContainsWord("applicant") || text.contains("Applicant") || headlineContainsWord("Primary contact") || headlineContainsWord("Alternative contact") || text.contains("Telephone number:")))
then
section.redactLineAfter("Contact point:", "PII", 28, true, "Applicant information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("Phone:", "PII", 28, true, "Applicant information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("Fax:", "PII", 28, true, "Applicant information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("Tel.:", "PII", 28, true, "Applicant information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("Tel:", "PII", 28, true, "Applicant information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("E-mail:", "PII", 28, true, "Applicant information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("Email:", "PII", 28, true, "Applicant information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("e-mail:", "PII", 28, true, "Applicant information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("E-mail address:", "PII", 28, true, "Applicant information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("Contact:", "PII", 28, true, "Applicant information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("Alternative contact:", "PII", 28, true, "Applicant information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("Telephone number:", "PII", 28, true, "Applicant information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("Telephone No:", "PII", 28, true, "Applicant information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("Fax number:", "PII", 28, true, "Applicant information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("Telephone:", "PII", 28, true, "Applicant information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("Phone No.", "PII", 28, true, "Applicant information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactBetween("No:", "Fax", "PII", 28, true, "Applicant information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactBetween("Contact:", "Tel.:", "PII", 28, true, "Applicant information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("European contact:", "PII", 28, true, "Applicant information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
end
rule "29: Redact contact information if applicant is found (Vertebrate study)"
when
Section(fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && (headlineContainsWord("applicant") || text.contains("Applicant") || headlineContainsWord("Primary contact") || headlineContainsWord("Alternative contact") || text.contains("Telephone number:")))
then
section.redactLineAfter("Contact point:", "PII", 29, true, "Applicant information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Phone:", "PII", 29, true, "Applicant information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Fax:", "PII", 29, true, "Applicant information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Tel.:", "PII", 29, true, "Applicant information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Tel:", "PII", 29, true, "Applicant information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("E-mail:", "PII", 29, true, "Applicant information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Email:", "PII", 29, true, "Applicant information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("e-mail:", "PII", 29, true, "Applicant information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("E-mail address:", "PII", 29, true, "Applicant information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Contact:", "PII", 29, true, "Applicant information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Alternative contact:", "PII", 29, true, "Applicant information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Telephone number:", "PII", 29, true, "Applicant information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Telephone No:", "PII", 29, true, "Applicant information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Fax number:", "PII", 29, true, "Applicant information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Telephone:", "PII", 29, true, "Applicant information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Phone No.", "PII", 29, true, "Applicant information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactBetween("No:", "Fax", "PII", 29, true, "Applicant information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactBetween("Contact:", "Tel.:", "PII", 29, true, "Applicant information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("European contact:", "PII", 29, true, "Applicant information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
end
rule "30: Redact contact information if Producer is found (Non vertebrate study)"
when
Section(!fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && (text.toLowerCase().contains("producer of the plant protection") || text.toLowerCase().contains("producer of the active substance") || text.contains("Manufacturer of the active substance") || text.contains("Manufacturer:") || text.contains("Producer or producers of the active substance")))
then
section.redactLineAfter("Contact:", "PII", 30, true, "Producer was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("Telephone:", "PII", 30, true, "Producer was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("Phone:", "PII", 30, true, "Producer was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("Fax:", "PII", 30, true, "Producer was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("E-mail:", "PII", 30, true, "Producer was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("Contact:", "PII", 30, true, "Producer was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("Fax number:", "PII", 30, true, "Producer was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("Telephone number:", "PII", 30, true, "Producer was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("Tel:", "PII", 30, true, "Producer was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactLineAfter("Phone No.", "PII", 30, true, "Producer was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactBetween("No:", "Fax", "PII", 30, true, "Producer was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
end
rule "31: Redact contact information if Producer is found (Vertebrate study)"
when
Section(fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && (text.toLowerCase().contains("producer of the plant protection") || text.toLowerCase().contains("producer of the active substance") || text.contains("Manufacturer of the active substance") || text.contains("Manufacturer:") || text.contains("Producer or producers of the active substance")))
then
section.redactLineAfter("Contact:", "PII", 31, true, "Producer was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Telephone:", "PII", 31, true, "Producer was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Phone:", "PII", 31, true, "Producer was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Fax:", "PII", 31, true, "Producer was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("E-mail:", "PII", 31, true, "Producer was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Contact:", "PII", 31, true, "Producer was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Fax number:", "PII", 31, true, "Producer was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Telephone number:", "PII", 31, true, "Producer was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Tel:", "PII", 31, true, "Producer was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Phone No.", "PII", 31, true, "Producer was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
section.redactBetween("No:", "Fax", "PII", 31, true, "Producer was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
end
rule "32: Redact AUTHOR(S) (Non vertebrate study)"
when
Section(!fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && searchText.contains("AUTHOR(S):") && searchText.contains("COMPLETION DATE:") && !searchText.contains("STUDY COMPLETION DATE:"))
then
section.redactLinesBetween("AUTHOR(S):", "COMPLETION DATE:", "PII", 32, true, "AUTHOR(S) was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
end
rule "33: Redact AUTHOR(S) (Vertebrate study)"
when
Section(fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && searchText.contains("AUTHOR(S):") && searchText.contains("COMPLETION DATE:") && !searchText.contains("STUDY COMPLETION DATE:"))
then
section.redactLinesBetween("AUTHOR(S):", "COMPLETION DATE:", "PII", 33, true, "AUTHOR(S) was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
end
rule "34: Redact AUTHOR(S) (Non vertebrate study)"
when
Section(!fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && searchText.contains("AUTHOR(S):") && searchText.contains("STUDY COMPLETION DATE:"))
then
section.redactLinesBetween("AUTHOR(S):", "STUDY COMPLETION DATE:", "PII", 34, true, "AUTHOR(S) was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
end
rule "35: Redact AUTHOR(S) (Vertebrate study)"
when
Section(fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && searchText.contains("AUTHOR(S):") && searchText.contains("STUDY COMPLETION DATE:"))
then
section.redactLinesBetween("AUTHOR(S):", "STUDY COMPLETION DATE:", "PII", 35, true, "AUTHOR(S) was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
end
rule "36: Redact PERFORMING LABORATORY (Non vertebrate study)"
when
Section(!fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && searchText.contains("PERFORMING LABORATORY:"))
then
section.redactBetween("PERFORMING LABORATORY:", "LABORATORY PROJECT ID:", "CBI_address", 36, true, "PERFORMING LABORATORY was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
section.redactNot("CBI_address", 36, "Performing laboratory found for non vertebrate study");
end
rule "37: Redact PERFORMING LABORATORY (Vertebrate study)"
when
Section(fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && searchText.contains("PERFORMING LABORATORY:"))
then
section.redactBetween("PERFORMING LABORATORY:", "LABORATORY PROJECT ID:", "CBI_address", 37, true, "PERFORMING LABORATORY was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
end
// --------------------------------------- other rules -------------------------------------------------------------------
rule "50: Purity Hint"
when
Section(searchText.toLowerCase().contains("purity"))
then
section.addHintAnnotationByRegEx("(purity ?( of|\\(.{1,20}\\))?( ?:)?) .{0,5}[\\d\\.]+( .{0,4}\\.)? ?%", true, 1, "hint_only");
end
rule "51: Ignore dossier_redaction entries if confidential"
when
Section(!fileAttributeByLabelEqualsIgnoreCase("Confidentiality","confidential") && matchesType("dossier_redaction"));
then
section.ignore("dossier_redaction");
end
rule "52: Redact signatures (Non vertebrate study)"
when
Section(!fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && matchesImageType("signature"))
then
section.redactImage("signature", 52, "Signature found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
end
rule "53: Redact signatures (Vertebrate study)"
when
Section(fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && matchesImageType("signature"))
then
section.redactImage("signature", 53, "Signature found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
end
rule "54: Redact Logos (Vertebrate study)"
when
Section(fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && matchesImageType("logo"))
then
section.redactImage("logo", 54, "Logo found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
end
@@ -0,0 +1,185 @@
{
"types": [
{
"type": "CBI_address",
"hexColor": "#9398a0",
"recommendationHexColor": "#8df06c",
"rank": 140,
"hint": false,
"dossierTemplateId": "b959cf8a-e8f8-470b-aad4-6fc602ef110b",
"caseInsensitive": false,
"recommendation": false,
"description": "All site names and addresses, and location (e.g. Syngenta, Monthey, GPS Co-ordinates, Mr Smith of … providing the…). Except addresses in published literature and the applicant address.",
"addToDictionaryAction": true,
"label": "CBI Address",
"hasDictionary": true,
"systemManaged": false
},
{
"type": "CBI_author",
"hexColor": "#9398a0",
"recommendationHexColor": "#8df06c",
"rank": 130,
"hint": false,
"dossierTemplateId": "b959cf8a-e8f8-470b-aad4-6fc602ef110b",
"caseInsensitive": false,
"recommendation": false,
"description": "All authors named in the study documentation. Except names in published literature.",
"addToDictionaryAction": true,
"label": "CBI Author",
"hasDictionary": true,
"systemManaged": false
},
{
"type": "PII",
"hexColor": "#9398a0",
"recommendationHexColor": "#8df06c",
"rank": 150,
"hint": false,
"dossierTemplateId": "b959cf8a-e8f8-470b-aad4-6fc602ef110b",
"caseInsensitive": false,
"recommendation": false,
"description": "Not authors but listed in the document: Names, signatures, telephone, email etc.; e.g. Reg Manager, QA Manager",
"addToDictionaryAction": true,
"label": "PII",
"hasDictionary": true,
"systemManaged": false
},
{
"type": "formula",
"hexColor": "#036ffc",
"recommendationHexColor": "#8df06c",
"rank": 1002,
"hint": true,
"dossierTemplateId": "b959cf8a-e8f8-470b-aad4-6fc602ef110b",
"caseInsensitive": true,
"recommendation": false,
"description": "Empty dictionary used to configure formula colors.",
"addToDictionaryAction": false,
"label": "Formula",
"hasDictionary": false,
"systemManaged": true
},
{
"type": "hint_only",
"hexColor": "#fa98f7",
"recommendationHexColor": "#8df06c",
"rank": 50,
"hint": true,
"dossierTemplateId": "b959cf8a-e8f8-470b-aad4-6fc602ef110b",
"caseInsensitive": true,
"recommendation": false,
"description": "Entries of this dictionary will be highlighted only",
"addToDictionaryAction": false,
"label": "Hint Only",
"hasDictionary": true,
"systemManaged": false
},
{
"type": "image",
"hexColor": "#bdd6ff",
"recommendationHexColor": "#8df06c",
"rank": 999,
"hint": true,
"dossierTemplateId": "b959cf8a-e8f8-470b-aad4-6fc602ef110b",
"caseInsensitive": true,
"recommendation": false,
"description": "Empty dictionary used to configure image colors.",
"addToDictionaryAction": false,
"label": "Image",
"hasDictionary": false,
"systemManaged": true
},
{
"type": "logo",
"hexColor": "#9398a0",
"recommendationHexColor": "#8df06c",
"rank": 1001,
"hint": false,
"dossierTemplateId": "b959cf8a-e8f8-470b-aad4-6fc602ef110b",
"caseInsensitive": true,
"recommendation": false,
"description": "Empty dictionary used to configure logo colors.",
"addToDictionaryAction": false,
"label": "Logo",
"hasDictionary": false,
"systemManaged": true
},
{
"type": "must_redact",
"hexColor": "#9398a0",
"recommendationHexColor": "#8df06c",
"rank": 100,
"hint": false,
"dossierTemplateId": "b959cf8a-e8f8-470b-aad4-6fc602ef110b",
"caseInsensitive": true,
"recommendation": false,
"description": "Entries of this dictionary get redacted wherever found.",
"addToDictionaryAction": false,
"label": "Must Redact",
"hasDictionary": true,
"systemManaged": false
},
{
"type": "ocr",
"hexColor": "#bdd6ff",
"recommendationHexColor": "#8df06c",
"rank": 1000,
"hint": true,
"dossierTemplateId": "b959cf8a-e8f8-470b-aad4-6fc602ef110b",
"caseInsensitive": true,
"recommendation": false,
"description": "Empty dictionary used to configure ocr colors.",
"addToDictionaryAction": false,
"label": "Ocr",
"hasDictionary": false,
"systemManaged": true
},
{
"type": "published_information",
"hexColor": "#85ebff",
"recommendationHexColor": "#8df06c",
"rank": 70,
"hint": true,
"dossierTemplateId": "b959cf8a-e8f8-470b-aad4-6fc602ef110b",
"caseInsensitive": false,
"recommendation": false,
"description": "Manual managed list of public journals and papers that need no redaction",
"addToDictionaryAction": true,
"label": "Published Information",
"hasDictionary": true,
"systemManaged": false
},
{
"type": "signature",
"hexColor": "#9398a0",
"recommendationHexColor": "#8df06c",
"rank": 1003,
"hint": false,
"dossierTemplateId": "b959cf8a-e8f8-470b-aad4-6fc602ef110b",
"caseInsensitive": true,
"recommendation": false,
"description": "Empty dictionary used to configure signature colors.",
"addToDictionaryAction": false,
"label": "Signature",
"hasDictionary": false,
"systemManaged": true
},
{
"type": "imported_redaction",
"hexColor": "#f0f0c0",
"recommendationHexColor": "#8df06c",
"rank": 9999,
"hint": false,
"dossierTemplateId": "b959cf8a-e8f8-470b-aad4-6fc602ef110b",
"caseInsensitive": false,
"recommendation": false,
"description": "Redaction Annotations that were imported from documents",
"addToDictionaryAction": false,
"label": "Imported Redaction",
"hasDictionary": false,
"systemManaged": true,
"autoHideSkipped": true
}
]
}