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Author SHA1 Message Date
Timo Bejan de92117b35 added imported flag 2022-02-11 11:33:34 +02:00
Philipp Schramm 143f4cfb0d Pull request #341: RED-3350 Communication with entity recognition via queues
Merge in RED/redaction-service from feature/RED-3350 to master

* commit '68727178e79224b7ca7f9f293e48ca21b4ce2f91':
  RED-3350 Communication with entity recognition via queues
2022-02-09 15:24:47 +01:00
Philipp Schramm 68727178e7 RED-3350 Communication with entity recognition via queues 2022-02-09 15:19:55 +01:00
Dominique Eiflaender 90fe282313 Pull request #339: RED-3327: Ignore recommendations if touches other type
Merge in RED/redaction-service from RED-3327-master to master

* commit '8689125ed9b09f73781d3babfd65537c0b1f4afe':
  RED-3327: Ignore recommendations if touches other type
2022-02-01 11:19:26 +01:00
deiflaender 8689125ed9 RED-3327: Ignore recommendations if touches other type 2022-02-01 11:06:32 +01:00
Dominique Eiflaender e68c6798be Pull request #337: RED-3243: Improved imported redactions logic
Merge in RED/redaction-service from RED-3243-8 to master

* commit '58b1db66cc2cc67b3b4e26295478824e5052d6a3':
  RED-3243: Improved imported redactions logic
2022-01-31 14:47:54 +01:00
deiflaender 58b1db66cc RED-3243: Improved imported redactions logic 2022-01-31 14:42:49 +01:00
deiflaender 0072d38d68 Use base image to speedup build 2022-01-31 12:05:10 +01:00
deiflaender 25a409d3a5 RED-3243: Added ImportedRedaction model classes 2022-01-31 11:11:32 +01:00
Timo Bejan ca1da20ba3 Pull request #335: immutable field fix
Merge in RED/redaction-service from RED-3242 to master

* commit '3c691a1afc9ce67845aad5d15bbc99a0113f6a6b':
  immutable field fix
2022-01-28 10:57:04 +01:00
Timo Bejan 3c691a1afc immutable field fix 2022-01-28 11:29:43 +02:00
Timo Bejan 6813fbc3cb Pull request #333: since no more manual changes are fields of redactionLog, we can safely always merge, even legacy ones
Merge in RED/redaction-service from RED-3242 to master

* commit 'c9a75152fb9b4e02b3421dd16ae54056889b0aa9':
  since no more manual changes are fields of redactionLog, we can safely always merge, even legacy ones
2022-01-27 15:59:39 +01:00
Dominique Eiflaender a8a6fef07a Pull request #334: RED-3239: Protoyped logic for imported redactions
Merge in RED/redaction-service from RED-3239 to master

* commit '26661fa87beeb20b32f2be5a8b1b025e8d2d29fd':
  RED-3239: Protoyped logic for imported redactions
2022-01-27 15:31:16 +01:00
deiflaender 26661fa87b RED-3239: Protoyped logic for imported redactions 2022-01-27 15:21:33 +01:00
Timo Bejan c9a75152fb since no more manual changes are fields of redactionLog, we can safely always merge, even legacy ones 2022-01-27 15:30:43 +02:00
Timo Bejan 0da2a1ab26 Pull request #332: RED-3242 - excluded from automatic analysis - reworked redactionLog architecture
Merge in RED/redaction-service from RED-3242 to master

* commit 'd92a723fea21280d7bf482c3d74c7b177dbaa030':
  RED-3242 - excluded from automatic analysis - reworked redactionLog architecture
2022-01-27 14:06:35 +01:00
Timo Bejan d92a723fea RED-3242 - excluded from automatic analysis - reworked redactionLog architecture 2022-01-27 14:58:14 +02:00
Dominique Eiflaender 3109e3e4f0 Pull request #331: RED-3133: Ignore min length for values from ai
Merge in RED/redaction-service from RED-3133-Fix4 to master

* commit 'a1544588e8a3cfa0479d5d31d82463c5434674a1':
  RED-3133: Ignore min length for values from ai
2022-01-26 16:32:23 +01:00
deiflaender a1544588e8 RED-3133: Ignore min length for values from ai 2022-01-26 16:18:41 +01:00
Dominique Eiflaender 8ba2bd776d Pull request #330: RED-3133: Fixed wrong ai entries again
Merge in RED/redaction-service from RED-3133-Fix2 to master

* commit '8ac7c309d981c8899eca40872a49198284d15944':
  RED-3133: Fixed wrong ai entries again
2022-01-26 15:42:13 +01:00
deiflaender 8ac7c309d9 RED-3133: Fixed wrong ai entries again 2022-01-26 15:31:13 +01:00
Dominique Eiflaender b8f7be28e7 Pull request #329: RED-3133: Fixed wrong ai entries
Merge in RED/redaction-service from RED-3133-Fix to master

* commit '921ae1839cb424a4d82afd88401fddc9cf855f8c':
  RED-3133: Fixed wrong ai entries
2022-01-26 15:09:04 +01:00
deiflaender 921ae1839c RED-3133: Fixed wrong ai entries 2022-01-26 14:43:54 +01:00
31 changed files with 964 additions and 758 deletions
@@ -1,4 +1,4 @@
FROM red/base-image:1.0.0
FROM red/redaction-service-base-v1:1.0.0
ARG PLATFORM_JAR
@@ -7,12 +7,3 @@ ENV PLATFORM_JAR ${PLATFORM_JAR}
ENV USES_ELASTICSEARCH false
COPY ["${PLATFORM_JAR}", "/"]
RUN apt-get update \
&& DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends \
wget cabextract xfonts-utils fonts-liberation \
&& rm -rf /var/lib/apt/lists/*
RUN curl http://ftp.debian.org/debian/pool/contrib/m/msttcorefonts/ttf-mscorefonts-installer_3.8_all.deb -o /tmp/ttf-mscorefonts-installer_3.8_all.deb \
&& dpkg -i /tmp/ttf-mscorefonts-installer_3.8_all.deb \
&& rm /tmp/ttf-mscorefonts-installer_3.8_all.deb \
@@ -12,7 +12,7 @@
<artifactId>redaction-service-api-v1</artifactId>
<properties>
<persistence-service.version>0.151.0</persistence-service.version>
<persistence-service.version>1.39.0</persistence-service.version>
</properties>
<dependencies>
@@ -1,17 +1,17 @@
package com.iqser.red.service.redaction.v1.model;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactions;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
import java.time.OffsetDateTime;
import java.util.ArrayList;
import java.util.HashSet;
import java.util.List;
import java.util.Set;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactions;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@Builder
@@ -0,0 +1,21 @@
package com.iqser.red.service.redaction.v1.model;
import java.util.ArrayList;
import java.util.List;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@Builder
@NoArgsConstructor
@AllArgsConstructor
public class ImportedRedaction {
private String id;
@Builder.Default
private List<Rectangle> positions = new ArrayList<>();
}
@@ -0,0 +1,20 @@
package com.iqser.red.service.redaction.v1.model;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@Builder
@NoArgsConstructor
@AllArgsConstructor
public class ImportedRedactions {
@Builder.Default
private Map<Integer, List<ImportedRedaction>> importedRedactions = new HashMap<>();
}
@@ -0,0 +1,48 @@
package com.iqser.red.service.redaction.v1.model;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.AnnotationStatus;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.BaseAnnotation;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
import java.time.OffsetDateTime;
import java.util.HashMap;
import java.util.Map;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class ManualChange {
private AnnotationStatus annotationStatus;
private ManualRedactionType manualRedactionType;
private OffsetDateTime processedDate;
private String userId;
private Map<String, Object> propertyChanges = new HashMap<>();
public boolean isProcessed() {
return processedDate != null;
}
public static ManualChange from(BaseAnnotation baseAnnotation) {
ManualChange manualChange = new ManualChange();
manualChange.annotationStatus = baseAnnotation.getStatus();
manualChange.processedDate = baseAnnotation.getProcessedDate();
manualChange.userId = baseAnnotation.getUser();
return manualChange;
}
public ManualChange withManualRedactionType(ManualRedactionType manualRedactionType) {
this.manualRedactionType = manualRedactionType;
return this;
}
public ManualChange withChange(String property, Object value) {
this.propertyChanges.put(property, value);
return this;
}
}
@@ -1,5 +1,13 @@
package com.iqser.red.service.redaction.v1.model;
public enum ManualRedactionType {
ADD, REMOVE, FORCE_REDACT, RECATEGORIZE, LEGAL_BASIS_CHANGE, RESIZE
ADD_LOCALLY,
ADD_TO_DICTIONARY,
REMOVE_LOCALLY,
REMOVE_FROM_DICTIONARY,
FORCE_REDACT,
FORCE_HINT,
RECATEGORIZE,
LEGAL_BASIS_CHANGE,
RESIZE
}
@@ -2,6 +2,6 @@ package com.iqser.red.service.redaction.v1.model;
public enum MessageType {
FULL_ANALYSE, REANALYSE, SURROUNDING_TEXT
ANALYSE, REANALYSE, STRUCTURE_ANALYSE, SURROUNDING_TEXT
}
@@ -2,16 +2,9 @@ package com.iqser.red.service.redaction.v1.model;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.AnnotationStatus;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.Comment;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.EqualsAndHashCode;
import lombok.NoArgsConstructor;
import lombok.*;
import java.util.ArrayList;
import java.util.HashSet;
import java.util.List;
import java.util.Set;
import java.util.*;
@Data
@@ -28,27 +21,20 @@ public class RedactionLogEntry {
private int matchedRule;
private boolean rectangle;
private String legalBasis;
private boolean imported;
private boolean redacted;
private boolean isHint;
private boolean isRecommendation;
private boolean hasBeenResized;
private boolean hasBeenRecategorized;
private boolean hasLegalBasisChanged;
private boolean hasBeenForced;
private boolean hasBeenRemovedByManualOverride;
private String section;
private float[] color;
@Builder.Default
private List<Rectangle> positions = new ArrayList<>();
private int sectionNumber;
private boolean manual;
private AnnotationStatus status;
private ManualRedactionType manualRedactionType;
private String manualRedactionUserId;
private boolean isDictionaryEntry;
private String textBefore;
private String textAfter;
@@ -62,21 +48,39 @@ public class RedactionLogEntry {
private boolean isImage;
private boolean imageHasTransparency;
private boolean isDictionaryEntry;
private boolean isDossierDictionaryEntry;
private boolean excluded;
private String recategorizationType;
private String legalBasisChangeValue;
@EqualsAndHashCode.Exclude
@Builder.Default
private List<Change> changes = new ArrayList<>();
private Set<Engine> engines= new HashSet<>();
@EqualsAndHashCode.Exclude
@Builder.Default
private List<ManualChange> manualChanges = new ArrayList<>();
private Set<Engine> engines = new HashSet<>();
private Set<String> reference = new HashSet<>();
public boolean lastChangeIsRemoved() {
return last(changes).map(c -> c.getType() == ChangeType.REMOVED).orElse(false);
}
public boolean isLocalManualRedaction() {
return manualChanges.stream().anyMatch(mc -> mc.getManualRedactionType() == ManualRedactionType.ADD_LOCALLY &&
mc.getAnnotationStatus() == AnnotationStatus.APPROVED);
}
public boolean isManuallyRemoved() {
return manualChanges.stream().anyMatch(mc -> mc.getManualRedactionType() == ManualRedactionType.REMOVE_LOCALLY &&
mc.getAnnotationStatus() == AnnotationStatus.APPROVED);
}
private <T> Optional<T> last(List<T> list) {
return list.isEmpty() ? Optional.empty() : Optional.of(list.get(list.size() - 1));
}
}
@@ -55,8 +55,7 @@ public class RedactionController implements RedactionResource {
public AnnotateResponse annotate(@RequestBody AnnotateRequest annotateRequest) {
var storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(annotateRequest
.getDossierId(), annotateRequest.getFileId(), FileType.ORIGIN));
var storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(annotateRequest.getDossierId(), annotateRequest.getFileId(), FileType.ORIGIN));
var mergedRedactionLog = getRedactionLog(RedactionRequest.builder()
.fileId(annotateRequest.getFileId())
.manualRedactions(annotateRequest.getManualRedactions())
@@ -85,13 +84,11 @@ public class RedactionController implements RedactionResource {
@Override
public RedactionResult classify(@RequestBody RedactionRequest redactionRequest) {
var storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(redactionRequest
.getDossierId(), redactionRequest.getFileId(), FileType.ORIGIN));
var storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(redactionRequest.getDossierId(), redactionRequest.getFileId(), FileType.ORIGIN));
try {
Document classifiedDoc = pdfSegmentationService.parseDocument(storedObjectStream, null);
storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(redactionRequest
.getDossierId(), redactionRequest.getFileId(), FileType.ORIGIN));
storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(redactionRequest.getDossierId(), redactionRequest.getFileId(), FileType.ORIGIN));
try (PDDocument pdDocument = PDDocument.load(storedObjectStream)) {
pdDocument.setAllSecurityToBeRemoved(true);
@@ -113,13 +110,11 @@ public class RedactionController implements RedactionResource {
@Override
public RedactionResult sections(@RequestBody RedactionRequest redactionRequest) {
var storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(redactionRequest
.getDossierId(), redactionRequest.getFileId(), FileType.ORIGIN));
var storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(redactionRequest.getDossierId(), redactionRequest.getFileId(), FileType.ORIGIN));
try {
Document classifiedDoc = pdfSegmentationService.parseDocument(storedObjectStream, null);
storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(redactionRequest
.getDossierId(), redactionRequest.getFileId(), FileType.ORIGIN));
storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(redactionRequest.getDossierId(), redactionRequest.getFileId(), FileType.ORIGIN));
try (PDDocument pdDocument = PDDocument.load(storedObjectStream)) {
pdDocument.setAllSecurityToBeRemoved(true);
@@ -143,8 +138,7 @@ public class RedactionController implements RedactionResource {
Document classifiedDoc;
try {
var storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(redactionRequest
.getDossierId(), redactionRequest.getFileId(), FileType.ORIGIN));
var storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(redactionRequest.getDossierId(), redactionRequest.getFileId(), FileType.ORIGIN));
classifiedDoc = pdfSegmentationService.parseDocument(storedObjectStream, null);
} catch (Exception e) {
throw new RedactionException(e);
@@ -186,8 +180,7 @@ public class RedactionController implements RedactionResource {
log.info("Loaded redaction log with computationalVersion: {}", redactionLog.getAnalysisVersion());
SectionGrid sectionGrid = redactionStorageService.getSectionGrid(redactionRequest.getDossierId(), redactionRequest
.getFileId());
SectionGrid sectionGrid = redactionStorageService.getSectionGrid(redactionRequest.getDossierId(), redactionRequest.getFileId());
if (sectionGrid.getSections().isEmpty()) {
log.info("SectionGrid does not have headlines set. Computing headlines now!");
@@ -196,8 +189,7 @@ public class RedactionController implements RedactionResource {
// enhance section grid with headline data
for (var sectionText : text.getSectionTexts()) {
sectionGrid.getSections()
.add(new SectionGrid.SectionGridSection(sectionText.getSectionNumber(), sectionText.getHeadline(), sectionText
.getSectionAreas()
.add(new SectionGrid.SectionGridSection(sectionText.getSectionNumber(), sectionText.getHeadline(), sectionText.getSectionAreas()
.stream()
.map(SectionArea::getPage)
.collect(Collectors.toSet()), sectionText.getSectionAreas()));
@@ -206,13 +198,7 @@ public class RedactionController implements RedactionResource {
}
log.info("Loaded redaction log with computationalVersion: {}", redactionLog.getAnalysisVersion());
if (redactionLog.getAnalysisVersion() == 0) {
// old redaction logs are returned directly
return redactionLog;
} else {
return redactionLogMergeService.mergeRedactionLogData(redactionLog, sectionGrid, redactionRequest.getDossierTemplateId(), redactionRequest
.getManualRedactions(), redactionRequest.getExcludedPages());
}
return redactionLogMergeService.mergeRedactionLogData(redactionLog, sectionGrid, redactionRequest.getDossierTemplateId(), redactionRequest.getManualRedactions(), redactionRequest.getExcludedPages());
}
@@ -234,11 +220,9 @@ public class RedactionController implements RedactionResource {
@PathVariable("fileId") String fileId,
@RequestBody ManualRedactions manualRedactions) {
long start = System.currentTimeMillis();
var result = manualRedactionSurroundingTextService.addSurroundingText(dossierId, fileId, manualRedactions);
log.info("add surrounding text for manual redaction in dossierId {} and fileId {} took: {}", dossierId, fileId, System
.currentTimeMillis() - start);
return result;
log.info("Added surrounding text for manual redaction in dossierId {} and fileId {} took: {}", dossierId, fileId, result.getDuration());
return result.getManualRedactions();
}
}
@@ -1,5 +1,12 @@
package com.iqser.red.service.redaction.v1.server.queue;
import static com.iqser.red.service.redaction.v1.server.queue.MessagingConfiguration.REDACTION_DQL;
import static com.iqser.red.service.redaction.v1.server.queue.MessagingConfiguration.REDACTION_QUEUE;
import org.springframework.amqp.rabbit.annotation.RabbitHandler;
import org.springframework.amqp.rabbit.annotation.RabbitListener;
import org.springframework.stereotype.Service;
import com.fasterxml.jackson.core.JsonProcessingException;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.iqser.red.service.redaction.v1.model.AnalyzeRequest;
@@ -8,18 +15,10 @@ import com.iqser.red.service.redaction.v1.model.StructureAnalyzeRequest;
import com.iqser.red.service.redaction.v1.server.client.FileStatusProcessingUpdateClient;
import com.iqser.red.service.redaction.v1.server.redaction.service.AnalyzeService;
import com.iqser.red.service.redaction.v1.server.redaction.service.ManualRedactionSurroundingTextService;
import com.iqser.red.service.redaction.v1.server.redaction.service.NerAnalyserService;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
import org.springframework.amqp.rabbit.annotation.RabbitHandler;
import org.springframework.amqp.rabbit.annotation.RabbitListener;
import org.springframework.stereotype.Service;
import static com.iqser.red.service.redaction.v1.server.queue.MessagingConfiguration.REDACTION_DQL;
import static com.iqser.red.service.redaction.v1.server.queue.MessagingConfiguration.REDACTION_QUEUE;
@Slf4j
@Service
@RequiredArgsConstructor
@@ -28,7 +27,6 @@ public class RedactionMessageReceiver {
private final ObjectMapper objectMapper;
private final AnalyzeService analyzeService;
private final FileStatusProcessingUpdateClient fileStatusProcessingUpdateClient;
private final NerAnalyserService nerAnalyserService;
private final ManualRedactionSurroundingTextService manualRedactionSurroundingTextService;
@@ -40,31 +38,26 @@ public class RedactionMessageReceiver {
log.info("Processing analyze request for file: {}", analyzeRequest.getFileId());
AnalyzeResult result = null;
switch (analyzeRequest.getMessageType()){
switch (analyzeRequest.getMessageType()) {
case REANALYSE:
result = analyzeService.reanalyze(analyzeRequest);
log.info("Successfully reanalyzed dossier {} file {} took: {}", analyzeRequest.getDossierId(), analyzeRequest.getFileId(), result.getDuration());
break;
case FULL_ANALYSE:
// TODO Seperate stucture analysis by other queue
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(analyzeRequest.getDossierId(), analyzeRequest.getFileId()));
// TODO NerEntities should be computed and stored in entity-recognition-service, should be triggered by a seperate queue after structure analysis
nerAnalyserService.computeNerEntities(analyzeRequest.getDossierId(), analyzeRequest.getFileId());
result = analyzeService.analyze(analyzeRequest);
log.info("Successfully analyzed dossier {} file {} took: {}", analyzeRequest.getDossierId(), analyzeRequest.getFileId(), result
.getDuration());
case STRUCTURE_ANALYSE:
result = analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(analyzeRequest.getDossierId(), analyzeRequest.getFileId()));
log.info("Successfully analyzed structure dossier {} file {} took: {}", analyzeRequest.getDossierId(), analyzeRequest.getFileId(), result.getDuration());
break;
case ANALYSE:
result = analyzeService.analyze(analyzeRequest);
log.info("Successfully analyzed dossier {} file {} took: {}", analyzeRequest.getDossierId(), analyzeRequest.getFileId(), result.getDuration());
break;
case SURROUNDING_TEXT:
var manualRedactions = manualRedactionSurroundingTextService.addSurroundingText(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), analyzeRequest.getManualRedactions());
result = AnalyzeResult.builder()
.dossierId(analyzeRequest.getDossierId())
.fileId(analyzeRequest.getFileId())
.manualRedactions(manualRedactions)
.build();
result = manualRedactionSurroundingTextService.addSurroundingText(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), analyzeRequest.getManualRedactions());
log.info("Successfully added surrounding text for manual redaction in dossierId {} and fileId {} took: {}", analyzeRequest.getDossierId(), analyzeRequest.getFileId(), result.getDuration());
break;
}
@@ -12,6 +12,7 @@ import java.util.Collections;
import java.util.Comparator;
import java.util.HashMap;
import java.util.HashSet;
import java.util.Iterator;
import java.util.List;
import java.util.Map;
import java.util.Set;
@@ -71,36 +72,59 @@ public class Section {
private List<FileAttribute> fileAttributes = new ArrayList<>();
public void addAiEntities(String type, String asType) {
public void addAiEntities(String type, String asType){
Set<Entity> entitiesOfType = nerEntities.stream()
.filter(nerEntity -> nerEntity.getType().equals(type))
.collect(Collectors.toSet());
Set<String> values = entitiesOfType.stream().map(Entity::getWord).collect(Collectors.toSet());
Set<Entity> found = EntitySearchUtils.find(searchText, values, asType, headline, sectionNumber, false, false, Engine.NER, true);
EntitySearchUtils.clearAndFindPositions(found, searchableText, dictionary);
Set<Entity> entitiesOfType = nerEntities.stream().filter(nerEntity -> nerEntity.getType().equals(type)).collect(Collectors.toSet());
entitiesOfType.forEach(nerEntity -> nerEntity.setType(asType));
EntitySearchUtils.clearAndFindPositions(entitiesOfType, searchableText, dictionary);
EntitySearchUtils.addEntitiesWithHigherRank(entities, entitiesOfType, dictionary);
Set<Entity> finalResult = new HashSet<>();
// Only keep Entities with correct offsets from AI Service.
Iterator<Entity> itty = found.iterator();
while (itty.hasNext()) {
Entity current = itty.next();
boolean foundSameOffsets = false;
for (Entity entity : entitiesOfType) {
if (entity.getStart().equals(current.getStart()) && entity.getEnd().equals(current.getEnd())) {
foundSameOffsets = true;
}
}
if (foundSameOffsets) {
finalResult.add(current);
}
}
EntitySearchUtils.addEntitiesWithHigherRank(entities, finalResult, dictionary);
EntitySearchUtils.removeEntitiesContainedInLarger(entities);
nerEntities.removeAll(entitiesOfType);
}
public void combineAiTypes(String startType, String combineTypes, int maxDistanceBetween, String asType, int minPartMatches, boolean allowDuplicateTypes){
public void combineAiTypes(String startType, String combineTypes, int maxDistanceBetween, String asType,
int minPartMatches, boolean allowDuplicateTypes) {
Set<String> combineSet = Set.of(combineTypes.split(","));
List<Entity> sorted = nerEntities.stream().sorted(Comparator.comparing(Entity::getStart)).collect(Collectors.toList());
List<Entity> sorted = nerEntities.stream()
.sorted(Comparator.comparing(Entity::getStart))
.collect(Collectors.toList());
Set<Entity> found = new HashSet<>();
int start = -1;
int lastEnd = -1;
int numberOfMatchParts = 0;
Set<String> foundParts = new HashSet<>();
for (Entity entity : sorted){
if(entity.getType().equals(startType) && start == -1) {
for (Entity entity : sorted) {
if (entity.getType().equals(startType) && start == -1) {
lastEnd = entity.getEnd();
start = entity.getStart();
foundParts.add(entity.getType());
numberOfMatchParts++;
} else if(!allowDuplicateTypes && foundParts.contains(entity.getType())){
if(numberOfMatchParts >= minPartMatches) {
} else if (!allowDuplicateTypes && foundParts.contains(entity.getType())) {
if (numberOfMatchParts >= minPartMatches) {
String value = searchText.substring(start, lastEnd);
found.addAll(findEntities(value, asType, false, true, 0, null, null, Engine.NER));
}
@@ -108,14 +132,14 @@ public class Section {
lastEnd = -1;
numberOfMatchParts = 0;
foundParts = new HashSet<>();
if(entity.getType().equals(startType)){
if (entity.getType().equals(startType)) {
lastEnd = entity.getEnd();
start = entity.getStart();
foundParts.add(entity.getType());
numberOfMatchParts++;
}
} else if(entity.getType().equals(startType) && start != -1){
if(numberOfMatchParts >= minPartMatches) {
} else if (entity.getType().equals(startType) && start != -1) {
if (numberOfMatchParts >= minPartMatches) {
String value = searchText.substring(start, lastEnd);
found.addAll(findEntities(value, asType, false, true, 0, null, null, Engine.NER));
}
@@ -125,24 +149,25 @@ public class Section {
foundParts = new HashSet<>();
foundParts.add(entity.getType());
numberOfMatchParts++;
} else if(start != -1 && combineSet.contains(entity.getType()) && entity.getStart() - lastEnd < maxDistanceBetween){
} else if (start != -1 && combineSet.contains(entity.getType()) && entity.getStart() - lastEnd < maxDistanceBetween) {
lastEnd = entity.getEnd();
numberOfMatchParts++;
foundParts.add(entity.getType());
}
}
if(numberOfMatchParts >= minPartMatches) {
if (numberOfMatchParts >= minPartMatches) {
String value = searchText.substring(start, lastEnd);
found.addAll(findEntities(value, asType, false, true, 0, null, null, Engine.NER));
}
if(!found.isEmpty()) {
if (!found.isEmpty()) {
EntitySearchUtils.addEntitiesWithHigherRank(entities, found, dictionary);
EntitySearchUtils.removeEntitiesContainedInLarger(entities);
}
}
@WhenCondition
public boolean fileAttributeByIdEquals(@Argument(ArgumentType.FILE_ATTRIBUTE) String id,
@Argument(ArgumentType.STRING) String value) {
@@ -235,6 +260,7 @@ public class Section {
return nerEntities.stream().anyMatch(entity -> !entity.isIgnored() && entity.getType().equals(type));
}
@WhenCondition
public boolean matchesType(@Argument(ArgumentType.TYPE) String type) {
@@ -257,7 +283,8 @@ public class Section {
@ThenAction
public void expandByRegEx(@Argument(ArgumentType.TYPE) String type, @Argument(ArgumentType.REGEX) String suffixPattern,
public void expandByRegEx(@Argument(ArgumentType.TYPE) String type,
@Argument(ArgumentType.REGEX) String suffixPattern,
@Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive,
@Argument(ArgumentType.INTEGER) int group) {
@@ -266,7 +293,8 @@ public class Section {
@ThenAction
public void expandByRegEx(@Argument(ArgumentType.TYPE) String type, @Argument(ArgumentType.REGEX) String suffixPattern,
public void expandByRegEx(@Argument(ArgumentType.TYPE) String type,
@Argument(ArgumentType.REGEX) String suffixPattern,
@Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive,
@Argument(ArgumentType.INTEGER) int group,
@Argument(ArgumentType.REGEX) String valuePattern) {
@@ -378,7 +406,8 @@ public class Section {
}
public void ignore(String type){
public void ignore(String type) {
entities.removeIf(entity -> entity.getType().equals(type));
}
@@ -702,19 +731,13 @@ public class Section {
}
private Set<Entity> findEntities(String value,
String asType,
boolean caseInsensitive,
boolean redacted,
int ruleNumber,
String reason,
String legalBasis,
Engine engine) {
private Set<Entity> findEntities(String value, String asType, boolean caseInsensitive, boolean redacted,
int ruleNumber, String reason, String legalBasis, Engine engine) {
String text = caseInsensitive ? searchText.toLowerCase() : searchText;
String searchValue = caseInsensitive ? value.toLowerCase() : value;
Set<Entity> found = EntitySearchUtils.find(text, Set.of(searchValue), asType, headline, sectionNumber, false, false, engine);
Set<Entity> found = EntitySearchUtils.find(text, Set.of(searchValue), asType, headline, sectionNumber, false, false, engine, false);
found.forEach(entity -> {
if (redacted) {
@@ -1,31 +1,55 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.*;
import static com.iqser.red.service.redaction.v1.server.redaction.service.ImportedRedactionService.IMPORTED_REDACTION_TYPE;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.stream.Collectors;
import java.util.stream.Stream;
import org.kie.api.runtime.KieContainer;
import org.springframework.stereotype.Service;
import org.springframework.web.bind.annotation.RequestBody;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactions;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.IdRemoval;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.ManualForceRedaction;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.ManualImageRecategorization;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.ManualLegalBasisChange;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.dossier.file.FileType;
import com.iqser.red.service.redaction.v1.model.AnalyzeRequest;
import com.iqser.red.service.redaction.v1.model.AnalyzeResult;
import com.iqser.red.service.redaction.v1.model.Rectangle;
import com.iqser.red.service.redaction.v1.model.*;
import com.iqser.red.service.redaction.v1.model.RedactionLog;
import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
import com.iqser.red.service.redaction.v1.model.SectionArea;
import com.iqser.red.service.redaction.v1.model.SectionGrid;
import com.iqser.red.service.redaction.v1.model.StructureAnalyzeRequest;
import com.iqser.red.service.redaction.v1.server.classification.model.Document;
import com.iqser.red.service.redaction.v1.server.classification.model.SectionText;
import com.iqser.red.service.redaction.v1.server.classification.model.Text;
import com.iqser.red.service.redaction.v1.server.client.LegalBasisClient;
import com.iqser.red.service.redaction.v1.server.client.model.NerEntities;
import com.iqser.red.service.redaction.v1.server.exception.RedactionException;
import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
import com.iqser.red.service.redaction.v1.server.redaction.model.*;
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryIncrement;
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryVersion;
import com.iqser.red.service.redaction.v1.server.redaction.model.Image;
import com.iqser.red.service.redaction.v1.server.redaction.model.PageEntities;
import com.iqser.red.service.redaction.v1.server.redaction.model.PdfImage;
import com.iqser.red.service.redaction.v1.server.redaction.model.RedRectangle2D;
import com.iqser.red.service.redaction.v1.server.redaction.utils.EntitySearchUtils;
import com.iqser.red.service.redaction.v1.server.segmentation.ImageService;
import com.iqser.red.service.redaction.v1.server.segmentation.PdfSegmentationService;
import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
import lombok.RequiredArgsConstructor;
import lombok.SneakyThrows;
import lombok.extern.slf4j.Slf4j;
import org.kie.api.runtime.KieContainer;
import org.springframework.stereotype.Service;
import org.springframework.web.bind.annotation.RequestBody;
import java.util.*;
import java.util.stream.Collectors;
import java.util.stream.Stream;
@Slf4j
@Service
@@ -43,11 +67,11 @@ public class AnalyzeService {
private final RedactionServiceSettings redactionServiceSettings;
private final SectionTextBuilderService sectionTextBuilderService;
private final SectionGridCreatorService sectionGridCreatorService;
private final NerAnalyserService nerAnalyserService;
private final ImageService imageService;
private final ImportedRedactionService importedRedactionService;
public void analyzeDocumentStructure(StructureAnalyzeRequest analyzeRequest) {
public AnalyzeResult analyzeDocumentStructure(StructureAnalyzeRequest analyzeRequest) {
long startTime = System.currentTimeMillis();
@@ -55,9 +79,7 @@ public class AnalyzeService {
Document classifiedDoc;
try {
var storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(analyzeRequest
.getDossierId(), analyzeRequest.getFileId(), FileType.ORIGIN));
var storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), FileType.ORIGIN));
Map<Integer, List<PdfImage>> pdfImages = null;
if (redactionServiceSettings.isEnableImageClassification()) {
@@ -75,50 +97,24 @@ public class AnalyzeService {
Text text = new Text(pageCount, sectionTexts);
// enhance section grid with headline data
sectionTexts.forEach(sectionText -> classifiedDoc
.getSectionGrid().getSections().add(new SectionGrid.SectionGridSection(sectionText.getSectionNumber(),
sectionText.getHeadline(),
sectionText.getSectionAreas().stream().map(SectionArea::getPage).collect(Collectors.toSet()),
sectionText.getSectionAreas())));
sectionTexts.forEach(sectionText -> classifiedDoc.getSectionGrid()
.getSections()
.add(new SectionGrid.SectionGridSection(sectionText.getSectionNumber(), sectionText.getHeadline(), sectionText.getSectionAreas()
.stream()
.map(SectionArea::getPage)
.collect(Collectors.toSet()), sectionText.getSectionAreas())));
log.info("Store text and section grid for file {} in dossier {}", analyzeRequest.getFileId(), analyzeRequest.getDossierId());
redactionStorageService.storeObject(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), FileType.TEXT, text);
redactionStorageService.storeObject(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), FileType.SECTION_GRID, classifiedDoc
.getSectionGrid());
redactionStorageService.storeObject(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), FileType.SECTION_GRID, classifiedDoc.getSectionGrid());
log.info("Document structure analysis successful, took: {}", System.currentTimeMillis() - startTime);
}
public AnalyzeResult analyze(AnalyzeRequest analyzeRequest) {
long startTime = System.currentTimeMillis();
var text = redactionStorageService.getText(analyzeRequest.getDossierId(), analyzeRequest.getFileId());
var nerEntities = redactionStorageService.getNerEntities(analyzeRequest.getDossierId(), analyzeRequest.getFileId());
if (redactionServiceSettings.isEnableEntityRecognition() && nerEntities == null) {
nerAnalyserService.computeNerEntities(analyzeRequest.getDossierId(), analyzeRequest.getFileId());
nerEntities = redactionStorageService.getNerEntities(analyzeRequest.getDossierId(), analyzeRequest.getFileId());
}
dictionaryService.updateDictionary(analyzeRequest.getDossierTemplateId(), analyzeRequest.getDossierId());
KieContainer kieContainer = droolsExecutionService.updateRules(analyzeRequest.getDossierTemplateId());
long rulesVersion = droolsExecutionService.getRulesVersion(analyzeRequest.getDossierTemplateId());
Dictionary dictionary = dictionaryService.getDeepCopyDictionary(analyzeRequest.getDossierTemplateId(), analyzeRequest
.getDossierId());
PageEntities pageEntities = entityRedactionService.findEntities(dictionary, text.getSectionTexts(), kieContainer, analyzeRequest, nerEntities);
dictionaryService.updateExternalDictionary(dictionary, analyzeRequest.getDossierTemplateId(), analyzeRequest.getDossierId());
List<RedactionLogEntry> redactionLogEntries = redactionLogCreatorService.createRedactionLog(pageEntities, text.getNumberOfPages(), analyzeRequest
.getDossierTemplateId());
var legalBasis = legalBasisClient.getLegalBasisMapping(analyzeRequest.getDossierTemplateId());
var redactionLog = new RedactionLog(redactionServiceSettings.getAnalysisVersion(), analyzeRequest.getAnalysisNumber(),
redactionLogEntries, legalBasis, dictionary.getVersion().getDossierTemplateVersion(), dictionary.getVersion().getDossierVersion(),
rulesVersion, legalBasisClient.getVersion(analyzeRequest.getDossierTemplateId()));
return finalizeAnalysis(analyzeRequest, startTime, redactionLog, text, dictionary.getVersion(), false);
return AnalyzeResult.builder()
.dossierId(analyzeRequest.getDossierId())
.fileId(analyzeRequest.getFileId())
.duration(System.currentTimeMillis() - startTime)
.numberOfPages(text.getNumberOfPages())
.analysisVersion(redactionServiceSettings.getAnalysisVersion())
.build();
}
@@ -135,8 +131,7 @@ public class AnalyzeService {
return analyze(analyzeRequest);
}
DictionaryIncrement dictionaryIncrement = dictionaryService.getDictionaryIncrements(analyzeRequest.getDossierTemplateId(), new DictionaryVersion(redactionLog
.getDictionaryVersion(), redactionLog.getDossierDictionaryVersion()), analyzeRequest.getDossierId());
DictionaryIncrement dictionaryIncrement = dictionaryService.getDictionaryIncrements(analyzeRequest.getDossierTemplateId(), new DictionaryVersion(redactionLog.getDictionaryVersion(), redactionLog.getDossierDictionaryVersion()), analyzeRequest.getDossierId());
Set<Integer> sectionsToReanalyse = !analyzeRequest.getSectionsToReanalyse()
.isEmpty() ? analyzeRequest.getSectionsToReanalyse() : findSectionsToReanalyse(dictionaryIncrement, redactionLog, text, analyzeRequest);
@@ -145,10 +140,11 @@ public class AnalyzeService {
return finalizeAnalysis(analyzeRequest, startTime, redactionLog, text, dictionaryIncrement.getDictionaryVersion(), true);
}
var nerEntities = redactionStorageService.getNerEntities(analyzeRequest.getDossierId(), analyzeRequest.getFileId());
if (redactionServiceSettings.isEnableEntityRecognition() && nerEntities == null) {
nerAnalyserService.computeNerEntities(analyzeRequest.getDossierId(), analyzeRequest.getFileId());
NerEntities nerEntities;
if (redactionServiceSettings.isNerServiceEnabled()) {
nerEntities = redactionStorageService.getNerEntities(analyzeRequest.getDossierId(), analyzeRequest.getFileId());
} else {
nerEntities = NerEntities.builder().build();
}
List<SectionText> reanalysisSections = text.getSectionTexts()
@@ -158,19 +154,56 @@ public class AnalyzeService {
KieContainer kieContainer = droolsExecutionService.updateRules(analyzeRequest.getDossierTemplateId());
Dictionary dictionary = dictionaryService.getDeepCopyDictionary(analyzeRequest.getDossierTemplateId(), analyzeRequest
.getDossierId());
Dictionary dictionary = dictionaryService.getDeepCopyDictionary(analyzeRequest.getDossierTemplateId(), analyzeRequest.getDossierId());
PageEntities pageEntities = entityRedactionService.findEntities(dictionary, reanalysisSections, kieContainer, analyzeRequest, nerEntities);
var newRedactionLogEntries = redactionLogCreatorService.createRedactionLog(pageEntities, text.getNumberOfPages(), analyzeRequest
.getDossierTemplateId());
var newRedactionLogEntries = redactionLogCreatorService.createRedactionLog(pageEntities, text.getNumberOfPages(), analyzeRequest.getDossierTemplateId());
var importedRedactionFilteredEntries = importedRedactionService.processImportedRedactions(analyzeRequest.getDossierTemplateId(), analyzeRequest.getDossierId(), analyzeRequest.getFileId(), newRedactionLogEntries, false);
redactionLog.getRedactionLogEntry()
.removeIf(entry -> sectionsToReanalyse.contains(entry.getSectionNumber()) && !entry.getType()
.equals(IMPORTED_REDACTION_TYPE));
redactionLog.getRedactionLogEntry().addAll(importedRedactionFilteredEntries);
redactionLog.getRedactionLogEntry().removeIf(entry -> sectionsToReanalyse.contains(entry.getSectionNumber()));
redactionLog.getRedactionLogEntry().addAll(newRedactionLogEntries);
return finalizeAnalysis(analyzeRequest, startTime, redactionLog, text, dictionaryIncrement.getDictionaryVersion(), true);
}
public AnalyzeResult analyze(AnalyzeRequest analyzeRequest) {
long startTime = System.currentTimeMillis();
var text = redactionStorageService.getText(analyzeRequest.getDossierId(), analyzeRequest.getFileId());
NerEntities nerEntities;
if (redactionServiceSettings.isNerServiceEnabled()) {
nerEntities = redactionStorageService.getNerEntities(analyzeRequest.getDossierId(), analyzeRequest.getFileId());
} else {
nerEntities = NerEntities.builder().build();
}
dictionaryService.updateDictionary(analyzeRequest.getDossierTemplateId(), analyzeRequest.getDossierId());
KieContainer kieContainer = droolsExecutionService.updateRules(analyzeRequest.getDossierTemplateId());
long rulesVersion = droolsExecutionService.getRulesVersion(analyzeRequest.getDossierTemplateId());
Dictionary dictionary = dictionaryService.getDeepCopyDictionary(analyzeRequest.getDossierTemplateId(), analyzeRequest.getDossierId());
PageEntities pageEntities = entityRedactionService.findEntities(dictionary, text.getSectionTexts(), kieContainer, analyzeRequest, nerEntities);
dictionaryService.updateExternalDictionary(dictionary, analyzeRequest.getDossierTemplateId(), analyzeRequest.getDossierId());
List<RedactionLogEntry> redactionLogEntries = redactionLogCreatorService.createRedactionLog(pageEntities, text.getNumberOfPages(), analyzeRequest.getDossierTemplateId());
var legalBasis = legalBasisClient.getLegalBasisMapping(analyzeRequest.getDossierTemplateId());
var redactionLog = new RedactionLog(redactionServiceSettings.getAnalysisVersion(), analyzeRequest.getAnalysisNumber(), redactionLogEntries, legalBasis, dictionary.getVersion()
.getDossierTemplateVersion(), dictionary.getVersion()
.getDossierVersion(), rulesVersion, legalBasisClient.getVersion(analyzeRequest.getDossierTemplateId()));
var importedRedactionFilteredEntries = importedRedactionService.processImportedRedactions(analyzeRequest.getDossierTemplateId(), analyzeRequest.getDossierId(), analyzeRequest.getFileId(), redactionLog.getRedactionLogEntry(), true);
redactionLog.setRedactionLogEntry(importedRedactionFilteredEntries);
return finalizeAnalysis(analyzeRequest, startTime, redactionLog, text, dictionary.getVersion(), false);
}
private Set<Integer> findSectionsToReanalyse(DictionaryIncrement dictionaryIncrement, RedactionLog redactionLog,
Text text, AnalyzeRequest analyzeRequest) {
@@ -180,7 +213,7 @@ public class AnalyzeService {
Set<Integer> sectionsToReanalyse = new HashSet<>();
Map<Integer, Set<Image>> imageEntries = new HashMap<>();
for (RedactionLogEntry entry : redactionLog.getRedactionLogEntry()) {
if (entry.isManual() || relevantManuallyModifiedAnnotationIds.contains(entry.getId())) {
if (entry.isLocalManualRedaction() || relevantManuallyModifiedAnnotationIds.contains(entry.getId())) {
sectionsToReanalyse.add(entry.getSectionNumber());
}
if (entry.isImage()) {
@@ -211,10 +244,8 @@ public class AnalyzeService {
excludeExcludedPages(redactionLog, analyzeRequest.getExcludedPages());
var redactionLogChange = redactionChangeLogService.computeChanges(analyzeRequest.getDossierId(), analyzeRequest.getFileId(),
redactionLog, analyzeRequest.getAnalysisNumber());
redactionStorageService.storeObject(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), FileType.REDACTION_LOG, redactionLogChange
.getRedactionLog());
var redactionLogChange = redactionChangeLogService.computeChanges(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), redactionLog, analyzeRequest.getAnalysisNumber());
redactionStorageService.storeObject(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), FileType.REDACTION_LOG, redactionLogChange.getRedactionLog());
long duration = System.currentTimeMillis() - startTime;
@@ -231,6 +262,7 @@ public class AnalyzeService {
.legalBasisVersion(redactionLog.getLegalBasisVersion())
.dossierDictionaryVersion(redactionLog.getDossierDictionaryVersion())
.wasReanalyzed(isReanalysis)
.manualRedactions(analyzeRequest.getManualRedactions())
.build();
}
@@ -242,13 +274,14 @@ public class AnalyzeService {
}
return Stream.concat(manualRedactions.getLegalBasisChanges()
.stream()
.map(ManualLegalBasisChange::getAnnotationId), Stream.concat(manualRedactions.getImageRecategorization()
.stream()
.map(ManualImageRecategorization::getAnnotationId), Stream.concat(manualRedactions.getIdsToRemove()
.stream()
.map(IdRemoval::getAnnotationId), manualRedactions.getForceRedactions().stream().map(ManualForceRedaction::getAnnotationId))))
.collect(Collectors.toSet());
.stream()
.map(ManualLegalBasisChange::getAnnotationId), Stream.concat(manualRedactions.getImageRecategorization()
.stream()
.map(ManualImageRecategorization::getAnnotationId), Stream.concat(manualRedactions.getIdsToRemove()
.stream()
.map(IdRemoval::getAnnotationId), manualRedactions.getForceRedactions()
.stream()
.map(ManualForceRedaction::getAnnotationId)))).collect(Collectors.toSet());
}
@@ -1,6 +1,7 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.Comment;
import com.iqser.red.service.redaction.v1.model.Rectangle;
import com.iqser.red.service.redaction.v1.model.*;
import lombok.RequiredArgsConstructor;
import org.apache.pdfbox.pdmodel.PDDocument;
@@ -15,13 +16,10 @@ import org.apache.pdfbox.pdmodel.interactive.annotation.PDAnnotationText;
import org.apache.pdfbox.pdmodel.interactive.annotation.PDAnnotationTextMarkup;
import org.springframework.stereotype.Service;
import java.awt.Color;
import java.awt.*;
import java.io.IOException;
import java.util.ArrayList;
import java.util.GregorianCalendar;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.*;
import java.util.stream.Collectors;
@Service
@@ -107,7 +105,7 @@ public class AnnotationService {
private String createAnnotationContent(RedactionLogEntry redactionLogEntry) {
if (redactionLogEntry.isManual()) {
if (redactionLogEntry.isLocalManualRedaction()) {
return "\nManual Redaction\n\nIn Section : \"" + redactionLogEntry.getSection() + "\"";
}
return redactionLogEntry.getType() + " \nRule " + redactionLogEntry.getMatchedRule() + " matched\n\n" + redactionLogEntry.getReason() + "\n\nLegal basis:" + redactionLogEntry
@@ -6,7 +6,6 @@ import com.iqser.red.service.redaction.v1.server.client.DictionaryClient;
import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
import com.iqser.red.service.redaction.v1.server.redaction.model.*;
import com.iqser.red.service.redaction.v1.server.redaction.utils.IdBuilder;
import feign.FeignException;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
@@ -14,7 +13,8 @@ import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.lang3.SerializationUtils;
import org.springframework.stereotype.Service;
import java.awt.Color;
import java.awt.*;
import java.util.List;
import java.util.*;
import java.util.stream.Collectors;
@@ -63,7 +63,7 @@ public class DictionaryService {
});
});
if(dictionariesByDossier.containsKey(dossierId)) {
if (dictionariesByDossier.containsKey(dossierId)) {
dictionaryModels = dictionariesByDossier.get(dossierId).getDictionary();
dictionaryModels.forEach(dictionaryModel -> {
dictionaryModel.getEntries().forEach(dictionaryEntry -> {
@@ -105,7 +105,7 @@ public class DictionaryService {
dictionaryRepresentation.setDictionaryVersion(version);
dictionaryRepresentation.setDictionary(dictionary);
if(dossierId == null) {
if (dossierId == null) {
dictionariesByDossierTemplate.put(dossierTemplateId, dictionaryRepresentation);
} else {
dictionariesByDossier.put(dossierId, dictionaryRepresentation);
@@ -204,7 +204,7 @@ public class DictionaryService {
//TODO merge dictionaries if they have same names
long dossierDictionaryVersion = -1;
if(dictionariesByDossier.containsKey(dossierId)) {
if (dictionariesByDossier.containsKey(dossierId)) {
var dossierRepresentation = dictionariesByDossier.get(dossierId);
dossierRepresentation.getDictionary().forEach(dm -> {
copy.add(SerializationUtils.clone(dm));
@@ -9,15 +9,13 @@ import java.util.Set;
import java.util.stream.Collectors;
import java.util.stream.Stream;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.AnnotationStatus;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.IdRemoval;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualImageRecategorization;
import org.apache.commons.codec.binary.Base64;
import org.apache.commons.lang3.StringUtils;
import org.kie.api.runtime.KieContainer;
import org.springframework.stereotype.Service;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.AnnotationStatus;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.IdRemoval;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.ManualImageRecategorization;
import com.iqser.red.service.redaction.v1.model.AnalyzeRequest;
import com.iqser.red.service.redaction.v1.model.Engine;
import com.iqser.red.service.redaction.v1.server.classification.model.SectionText;
@@ -62,7 +60,7 @@ public class EntityRedactionService {
EntitySearchUtils.removeEntitiesContainedInLarger(entities);
}
Map<Integer, List<Entity>> entitiesPerPage = convertToEnititesPerPage(entities);
Map<Integer, List<Entity>> entitiesPerPage = convertToEntitiesPerPage(entities);
return new PageEntities(entitiesPerPage, imagesPerPage);
}
@@ -161,7 +159,7 @@ public class EntityRedactionService {
}
private Map<Integer, List<Entity>> convertToEnititesPerPage(Set<Entity> entities) {
private Map<Integer, List<Entity>> convertToEntitiesPerPage(Set<Entity> entities) {
Map<Integer, List<Entity>> entitiesPerPage = new HashMap<>();
for (Entity entity : entities) {
@@ -225,7 +223,7 @@ public class EntityRedactionService {
private Entities findEntities(SearchableText searchableText, String headline, int sectionNumber,
Dictionary dictionary, boolean local, NerEntities nerEntities,
List<Integer> cellstarts) {
List<Integer> cellStarts) {
Set<Entity> found = new HashSet<>();
String searchableString = searchableText.toString();
@@ -237,52 +235,46 @@ public class EntityRedactionService {
for (DictionaryModel model : dictionary.getDictionaryModels()) {
if (model.isCaseInsensitive()) {
EntitySearchUtils.addOrAddEngine(found, EntitySearchUtils.find(lowercaseInputString, model.getValues(local), model
.getType(), headline, sectionNumber, !local, model.isDossierDictionary(), local ? Engine.RULE : Engine.DICTIONARY));
.getType(), headline, sectionNumber, !local, model.isDossierDictionary(), local ? Engine.RULE : Engine.DICTIONARY, false));
} else {
EntitySearchUtils.addOrAddEngine(found, EntitySearchUtils.find(searchableString, model.getValues(local), model
.getType(), headline, sectionNumber, !local, model.isDossierDictionary(), local ? Engine.RULE : Engine.DICTIONARY));
.getType(), headline, sectionNumber, !local, model.isDossierDictionary(), local ? Engine.RULE : Engine.DICTIONARY, false));
}
}
Set<Entity> nerFound = new HashSet<>();
if (!local) {
Map<String, Set<String>> nerValuesPerType = getNerValues(sectionNumber, nerEntities, cellstarts);
nerValuesPerType.entrySet().forEach(entry -> {
EntitySearchUtils.addEntitiesWithHigherRank(nerFound, EntitySearchUtils.find(searchableString, entry.getValue(), entry
.getKey(), headline, sectionNumber, false, false, Engine.NER), dictionary);
});
nerFound.addAll(getNerValues(sectionNumber, nerEntities, cellStarts, headline));
}
return new Entities(EntitySearchUtils.clearAndFindPositions(found, searchableText, dictionary), nerFound) ;
return new Entities(EntitySearchUtils.clearAndFindPositions(found, searchableText, dictionary), nerFound);
}
private Map<String, Set<String>> getNerValues(int sectionNumber, NerEntities nerEntities,
List<Integer> cellstarts) {
private Set<Entity> getNerValues(int sectionNumber, NerEntities nerEntities, List<Integer> cellStarts,
String headline) {
Map<String, Set<String>> nerValuesPerType = new HashMap<>();
Set<Entity> entities = new HashSet<>();
if (redactionServiceSettings.isEnableEntityRecognition() && nerEntities.getResult()
.containsKey(sectionNumber)) {
if (redactionServiceSettings.isNerServiceEnabled() && nerEntities.getResult().containsKey(sectionNumber)) {
nerEntities.getResult().get(sectionNumber).forEach(res -> {
if (cellstarts == null || cellstarts.isEmpty()) {
nerValuesPerType.computeIfAbsent(res.getType(), (a) -> new HashSet<>())
.add(new String(Base64.decodeBase64(res.getValue().getBytes())));
if (cellStarts == null || cellStarts.isEmpty()) {
entities.add(new Entity(res.getValue(), res.getType(), res.getStartOffset(), res.getEndOffset(), headline, sectionNumber, false, false, Engine.NER));
} else {
boolean intersectsCellStart = false;
for (Integer cellStart : cellstarts) {
for (Integer cellStart : cellStarts) {
if (res.getStartOffset() < cellStart && cellStart < res.getEndOffset()) {
intersectsCellStart = true;
break;
}
}
if (!intersectsCellStart) {
nerValuesPerType.computeIfAbsent(res.getType(), (a) -> new HashSet<>())
.add(new String(Base64.decodeBase64(res.getValue().getBytes())));
entities.add(new Entity(res.getValue(), res.getType(), res.getStartOffset(), res.getEndOffset(), headline, sectionNumber, false, false, Engine.NER));
}
}
});
}
return nerValuesPerType;
return entities;
}
}
@@ -0,0 +1,102 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import java.util.Iterator;
import java.util.List;
import org.springframework.stereotype.Service;
import com.iqser.red.service.redaction.v1.model.ImportedRedaction;
import com.iqser.red.service.redaction.v1.model.ImportedRedactions;
import com.iqser.red.service.redaction.v1.model.Rectangle;
import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
import lombok.RequiredArgsConstructor;
@Service
@RequiredArgsConstructor
public class ImportedRedactionService {
public static final String IMPORTED_REDACTION_TYPE = "imported_redaction";
private final DictionaryService dictionaryService;
private final RedactionStorageService redactionStorageService;
public List<RedactionLogEntry> processImportedRedactions(String dossierTemplateId, String dossierId, String fileId,
List<RedactionLogEntry> redactionLogEntries, boolean addImportedRedactions) {
var importedRedactions = redactionStorageService.getImportedRedactions(dossierId, fileId);
if (importedRedactions == null) {
return redactionLogEntries;
}
redactionLogEntries.removeIf(redactionLogEntry -> hasIntersections(redactionLogEntry, importedRedactions));
if (addImportedRedactions) {
return addImportedRedactionsRedactionLogEntries(dossierTemplateId, redactionLogEntries, importedRedactions);
}
return redactionLogEntries;
}
private List<RedactionLogEntry> addImportedRedactionsRedactionLogEntries(String dossierTemplateId,
List<RedactionLogEntry> redactionLogEntries,
ImportedRedactions importedRedactions) {
for (List<ImportedRedaction> importedRedactionsValues : importedRedactions.getImportedRedactions().values()) {
for (ImportedRedaction importedRedaction : importedRedactionsValues) {
RedactionLogEntry redactionLogEntry = RedactionLogEntry.builder()
.id(importedRedaction.getId())
.type(IMPORTED_REDACTION_TYPE)
.imported(true)
.redacted(true)
.positions(importedRedaction.getPositions())
.color(getColor("imported_redaction", dossierTemplateId))
.build();
redactionLogEntries.add(redactionLogEntry);
}
}
return redactionLogEntries;
}
private boolean hasIntersections(RedactionLogEntry redactionLogEntry, ImportedRedactions importedRedactions) {
for (Rectangle rectangle : redactionLogEntry.getPositions()) {
if (importedRedactions.getImportedRedactions().containsKey(rectangle.getPage())) {
var importedRedactionsOnPage = importedRedactions.getImportedRedactions().get(rectangle.getPage());
for (ImportedRedaction importedRedaction : importedRedactionsOnPage) {
for (Rectangle importedRedactionPosition : importedRedaction.getPositions()) {
if (intersects(importedRedactionPosition, rectangle)) {
return true;
}
}
}
}
}
return false;
}
private boolean intersects(Rectangle importedPosition, Rectangle redactionLogPosition) {
return redactionLogPosition.getTopLeft()
.getX() + redactionLogPosition.getWidth() > importedPosition.getTopLeft()
.getX() && redactionLogPosition.getTopLeft()
.getY() + redactionLogPosition.getHeight() > importedPosition.getTopLeft()
.getY() && redactionLogPosition.getTopLeft().getX() < importedPosition.getTopLeft()
.getX() + importedPosition.getWidth() && redactionLogPosition.getTopLeft()
.getY() < importedPosition.getTopLeft().getY() + importedPosition.getHeight();
}
private float[] getColor(String type, String dossierTemplateId) {
return dictionaryService.getColor(type, dossierTemplateId);
}
}
@@ -7,10 +7,11 @@ import java.util.Set;
import org.apache.commons.lang3.tuple.Pair;
import org.springframework.stereotype.Service;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactionEntry;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactions;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualResizeRedaction;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.Rectangle;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.ManualRedactionEntry;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.ManualResizeRedaction;
import com.iqser.red.service.redaction.v1.model.AnalyzeResult;
import com.iqser.red.service.redaction.v1.model.Engine;
import com.iqser.red.service.redaction.v1.model.SectionArea;
import com.iqser.red.service.redaction.v1.server.classification.model.SectionText;
@@ -33,8 +34,9 @@ public class ManualRedactionSurroundingTextService {
private final SurroundingWordsService surroundingWordsService;
public ManualRedactions addSurroundingText(String dossierId, String fileId, ManualRedactions manualRedactions) {
public AnalyzeResult addSurroundingText(String dossierId, String fileId, ManualRedactions manualRedactions) {
long startTime = System.currentTimeMillis();
Text text = redactionStorageService.getText(dossierId, fileId);
List<ManualRedactionEntry> processedAddRedactions = new ArrayList<>();
List<ManualResizeRedaction> processedResizeRedactions = new ArrayList<>();
@@ -51,8 +53,7 @@ public class ManualRedactionSurroundingTextService {
while (addItty.hasNext()) {
var manualAddRedaction = addItty.next();
if (sectionContainsEntry(sectionArea, manualAddRedaction.getPositions())) {
var surroundingText = findSurroundingText(sectionText, manualAddRedaction.getValue(), manualAddRedaction
.getPositions());
var surroundingText = findSurroundingText(sectionText, manualAddRedaction.getValue(), manualAddRedaction.getPositions());
manualAddRedaction.setTextBefore(surroundingText.getLeft());
manualAddRedaction.setTextAfter(surroundingText.getRight());
processedAddRedactions.add(manualAddRedaction);
@@ -64,8 +65,7 @@ public class ManualRedactionSurroundingTextService {
while (resizeItty.hasNext()) {
var manualResizeRedaction = resizeItty.next();
if (sectionContainsEntry(sectionArea, manualResizeRedaction.getPositions())) {
var surroundingText = findSurroundingText(sectionText, manualResizeRedaction.getValue(), manualResizeRedaction
.getPositions());
var surroundingText = findSurroundingText(sectionText, manualResizeRedaction.getValue(), manualResizeRedaction.getPositions());
manualResizeRedaction.setTextBefore(surroundingText.getLeft());
manualResizeRedaction.setTextAfter(surroundingText.getRight());
processedResizeRedactions.add(manualResizeRedaction);
@@ -77,27 +77,31 @@ public class ManualRedactionSurroundingTextService {
manualRedactions.getEntriesToAdd().addAll(processedAddRedactions);
manualRedactions.getResizeRedactions().addAll(processedResizeRedactions);
return manualRedactions;
return AnalyzeResult.builder()
.dossierId(dossierId)
.fileId(fileId)
.manualRedactions(manualRedactions)
.duration(System.currentTimeMillis() - startTime)
.build();
}
private Pair<String, String> findSurroundingText(SectionText sectionText, String value,
List<Rectangle> toFindPositions) {
Set<Entity> entities = EntitySearchUtils.find(sectionText.getText(), Set.of(value), "dummy", sectionText.getHeadline(), sectionText
.getSectionNumber(), false, false, Engine.DICTIONARY);
Set<Entity> entities = EntitySearchUtils.find(sectionText.getText(), Set.of(value), "dummy", sectionText.getHeadline(), sectionText.getSectionNumber(), false, false, Engine.DICTIONARY, false);
Set<Entity> entitiesWithPositions = EntitySearchUtils.clearAndFindPositions(entities, sectionText.getSearchableText(), null);
Entity correctEntity = getEntityOnCorrectPosition(entitiesWithPositions, toFindPositions);
if(correctEntity == null){
if (correctEntity == null) {
log.warn("Could not calculate surrounding text");
return Pair.of("","");
return Pair.of("", "");
}
if (sectionText.getCellStarts() != null && !sectionText.getCellStarts().isEmpty()) {
surroundingWordsService.addSurroundingText(Set.of(correctEntity), sectionText.getSearchableText(), null, sectionText
.getCellStarts());
surroundingWordsService.addSurroundingText(Set.of(correctEntity), sectionText.getSearchableText(), null, sectionText.getCellStarts());
} else {
surroundingWordsService.addSurroundingText(Set.of(correctEntity), sectionText.getSearchableText(), null);
}
@@ -1,53 +0,0 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.dossier.file.FileType;
import com.iqser.red.service.redaction.v1.server.client.EntityRecognitionClient;
import com.iqser.red.service.redaction.v1.server.client.model.EntityRecognitionRequest;
import com.iqser.red.service.redaction.v1.server.client.model.EntityRecognitionSection;
import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
import org.apache.commons.codec.binary.Base64;
import org.springframework.stereotype.Service;
import java.util.stream.Collectors;
@Slf4j
@Service
@RequiredArgsConstructor
public class NerAnalyserService {
private final RedactionStorageService redactionStorageService;
private final EntityRecognitionClient entityRecognitionClient;
private final RedactionServiceSettings redactionServiceSettings;
public void computeNerEntities(String dossierId, String fileId) {
if (redactionServiceSettings.isEnableEntityRecognition()) {
var text = redactionStorageService.getText(dossierId, fileId);
long start = System.currentTimeMillis();
if (text != null) {
var nerRequest = EntityRecognitionRequest.builder()
.data(text.getSectionTexts()
.stream()
.map(sectionText -> new EntityRecognitionSection(sectionText.getSectionNumber(), new String(Base64
.encodeBase64(sectionText
.getText().getBytes()))))
.collect(Collectors.toList()))
.build();
var nerResponse = entityRecognitionClient.findAuthors(nerRequest);
log.info("Computing NER entities took: {} ms for dossierId {} and fileId {}", System.currentTimeMillis() - start, dossierId, fileId);
redactionStorageService.storeObject(dossierId, fileId, FileType.NER_ENTITIES, nerResponse);
} else {
log.warn("Warning, text for file: {} in dossier: {} is null", fileId, dossierId);
}
}
}
}
@@ -33,17 +33,11 @@ public class RedactionChangeLogService {
List<RedactionLogEntry> notRemovedPreviousEntries = previousRedactionLog.getRedactionLogEntry()
.stream()
.filter(entry -> !entry.getChanges()
.get(entry.getChanges().size() - 1)
.getType()
.equals(ChangeType.REMOVED))
.filter(entry -> !entry.lastChangeIsRemoved())
.collect(Collectors.toList());
Set<RedactionLogEntry> added = currentRedactionLog.getRedactionLogEntry().stream()
.filter(entry -> entry.getChanges().isEmpty() || !entry.getChanges()
.get(entry.getChanges().size() - 1)
.getType()
.equals(ChangeType.REMOVED)).collect(Collectors.toSet());
.filter(entry -> entry.getChanges().isEmpty() || !entry.lastChangeIsRemoved()).collect(Collectors.toSet());
notRemovedPreviousEntries.forEach(added::remove);
@@ -87,7 +81,7 @@ public class RedactionChangeLogService {
addedIds.forEach((k, v) -> {
if (v.getChanges().isEmpty()) {
v.getChanges().add(new Change(analysisNumber,ChangeType.ADDED, OffsetDateTime.now()));
v.getChanges().add(new Change(analysisNumber, ChangeType.ADDED, OffsetDateTime.now()));
}
newRedactionLogEntries.add(v);
});
@@ -70,7 +70,6 @@ public class RedactionLogCreatorService {
.legalBasis(image.getLegalBasis())
.matchedRule(image.getMatchedRule())
.isHint(dictionaryService.isHint(image.getType(), dossierTemplateId))
.manual(false)
.isDictionaryEntry(false)
.isRecommendation(false)
.positions(List.of(new Rectangle(new Point((float) image.getPosition()
@@ -92,7 +91,7 @@ public class RedactionLogCreatorService {
List<RedactionLogEntry> redactionLogEntities = new ArrayList<>();
// Duplicates can exist due table extraction colums over multiple rows.
// Duplicates can exist due table extraction columns over multiple rows.
Set<String> processedIds = new HashSet<>();
entityLoop:
@@ -173,10 +172,7 @@ public class RedactionLogCreatorService {
private boolean isCharClose(float x, float xDirAdj, float width) {
float max = x + (5 * width);
if (xDirAdj < max) {
return true;
}
return false;
return xDirAdj < max;
}
@@ -190,11 +186,7 @@ public class RedactionLogCreatorService {
float minY = y - offsetY;
float maxY = y + offsetY;
if (yCompare > minY && yCompare < maxY && heightCompare > minHeight && heightCompare < maxHeight) {
return true;
}
return false;
return yCompare > minY && yCompare < maxY && heightCompare > minHeight && heightCompare < maxHeight;
}
@@ -1,7 +1,9 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.*;
import com.iqser.red.service.redaction.v1.model.Rectangle;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.AnnotationStatus;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.Comment;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactions;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.*;
import com.iqser.red.service.redaction.v1.model.*;
import lombok.AllArgsConstructor;
import lombok.Data;
@@ -46,7 +48,7 @@ public class RedactionLogMergeService {
if (excludedPages != null && !excludedPages.isEmpty()) {
entry.getPositions().forEach(pos -> {
if (!entry.isManual() && excludedPages.contains(pos.getPage())) {
if (!entry.isLocalManualRedaction() && excludedPages.contains(pos.getPage())) {
entry.setExcluded(true);
}
});
@@ -117,9 +119,9 @@ public class RedactionLogMergeService {
var imageRecategorization = (ManualImageRecategorization) mrw.getItem();
String manualOverrideReason = null;
if (imageRecategorization.getStatus().equals(AnnotationStatus.APPROVED)) {
redactionLogEntry.setStatus(AnnotationStatus.APPROVED);
redactionLogEntry.setType(imageRecategorization.getType());
redactionLogEntry.setHasBeenRecategorized(true);
redactionLogEntry.setSection("Image:" + redactionLogEntry.getType());
if (dictionaryService.isHint(imageRecategorization.getType(), dossierTemplateId)) {
@@ -132,77 +134,65 @@ public class RedactionLogMergeService {
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", recategorized by manual override");
} else if (imageRecategorization.getStatus().equals(AnnotationStatus.REQUESTED)) {
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", requested to recategorize");
redactionLogEntry.setStatus(AnnotationStatus.REQUESTED);
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), dossierTemplateId, false, redactionLogEntry.isRedacted(), false));
redactionLogEntry.setRecategorizationType(imageRecategorization.getType());
} else {
redactionLogEntry.setStatus(AnnotationStatus.DECLINED);
}
redactionLogEntry.setManualRedactionUserId(imageRecategorization.getUser());
redactionLogEntry.setReason(manualOverrideReason);
redactionLogEntry.setManual(true);
redactionLogEntry.setManualRedactionType(ManualRedactionType.RECATEGORIZE);
redactionLogEntry.getManualChanges().add(ManualChange.from(imageRecategorization)
.withManualRedactionType(ManualRedactionType.RECATEGORIZE)
.withChange("type", imageRecategorization.getType()));
}
if (mrw.getItem() instanceof IdRemoval) {
var manualRemoval = (IdRemoval) mrw.getItem();
if (manualRemoval.getStatus().equals(AnnotationStatus.APPROVED) && manualRemoval.isRemoveFromDictionary()) {
log.info("Skipping merge for dictionary-modifying entry");
log.debug("Skipping merge for dictionary-modifying entry");
} else {
String manualOverrideReason = null;
if (manualRemoval.getStatus().equals(AnnotationStatus.APPROVED)) {
redactionLogEntry.setRedacted(false);
redactionLogEntry.setStatus(AnnotationStatus.APPROVED);
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", removed by manual override");
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), dossierTemplateId, false, redactionLogEntry.isRedacted(), true));
redactionLogEntry.setHint(false);
redactionLogEntry.setHasBeenRemovedByManualOverride(true);
} else if (manualRemoval.getStatus().equals(AnnotationStatus.REQUESTED)) {
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", requested to remove");
redactionLogEntry.setStatus(AnnotationStatus.REQUESTED);
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), dossierTemplateId, true, redactionLogEntry.isRedacted(), false));
} else {
redactionLogEntry.setStatus(AnnotationStatus.DECLINED);
}
redactionLogEntry.setReason(manualOverrideReason);
redactionLogEntry.setManual(true);
redactionLogEntry.setManualRedactionUserId(manualRemoval.getUser());
redactionLogEntry.setManualRedactionType(ManualRedactionType.REMOVE);
redactionLogEntry.setDictionaryEntry(manualRemoval.isRemoveFromDictionary());
redactionLogEntry.setDossierDictionaryEntry(manualRemoval.isRemoveFromDictionary());
redactionLogEntry.getManualChanges().add(ManualChange.from(manualRemoval)
.withManualRedactionType(manualRemoval.isRemoveFromDictionary() ?
ManualRedactionType.REMOVE_FROM_DICTIONARY : ManualRedactionType.REMOVE_LOCALLY));
}
}
if (mrw.getItem() instanceof ManualForceRedaction) {
var manualForceRedact = (ManualForceRedaction) mrw.getItem();
String manualOverrideReason = null;
var dictionaryIsHint = dictionaryService.isHint(redactionLogEntry.getType(), dossierTemplateId);
if (manualForceRedact.getStatus().equals(AnnotationStatus.APPROVED)) {
// Forcing a skipped hint should result in a hint
if (dictionaryService.isHint(redactionLogEntry.getType(), dossierTemplateId)) {
if (dictionaryIsHint) {
redactionLogEntry.setHint(true);
} else {
redactionLogEntry.setRedacted(true);
}
redactionLogEntry.setStatus(AnnotationStatus.APPROVED);
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), dossierTemplateId, false, redactionLogEntry.isRedacted(), false));
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", forced by manual override");
redactionLogEntry.setHasBeenForced(true);
redactionLogEntry.setLegalBasis(manualForceRedact.getLegalBasis());
} else if (manualForceRedact.getStatus().equals(AnnotationStatus.REQUESTED)) {
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", requested to force redact");
redactionLogEntry.setStatus(AnnotationStatus.REQUESTED);
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", requested to force " + (dictionaryIsHint ? "hint" : "redact"));
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), dossierTemplateId, true, redactionLogEntry.isRedacted(), false));
redactionLogEntry.setLegalBasis(manualForceRedact.getLegalBasis());
} else {
redactionLogEntry.setStatus(AnnotationStatus.DECLINED);
}
redactionLogEntry.setManualRedactionUserId(manualForceRedact.getUser());
redactionLogEntry.setReason(manualOverrideReason);
redactionLogEntry.setManual(true);
redactionLogEntry.setManualRedactionType(ManualRedactionType.FORCE_REDACT);
var manualChange = ManualChange.from(manualForceRedact)
.withManualRedactionType(dictionaryIsHint ? ManualRedactionType.FORCE_HINT : ManualRedactionType.FORCE_REDACT);
redactionLogEntry.getManualChanges().add(manualChange);
}
@@ -210,11 +200,9 @@ public class RedactionLogMergeService {
var manualLegalBasisChange = (ManualLegalBasisChange) mrw.getItem();
String manualOverrideReason = null;
if (manualLegalBasisChange.getStatus().equals(AnnotationStatus.APPROVED)) {
redactionLogEntry.setStatus(AnnotationStatus.APPROVED);
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", legal basis was manually changed");
redactionLogEntry.setLegalBasis(manualLegalBasisChange.getLegalBasis());
redactionLogEntry.setRedacted(true);
redactionLogEntry.setHasLegalBasisChanged(true);
if (manualLegalBasisChange.getSection() != null) {
redactionLogEntry.setSection(manualLegalBasisChange.getSection());
}
@@ -223,47 +211,45 @@ public class RedactionLogMergeService {
}
} else if (manualLegalBasisChange.getStatus().equals(AnnotationStatus.REQUESTED)) {
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", legal basis change requested");
redactionLogEntry.setStatus(AnnotationStatus.REQUESTED);
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), dossierTemplateId, true, redactionLogEntry.isRedacted(), false));
redactionLogEntry.setLegalBasisChangeValue(manualLegalBasisChange.getLegalBasis());
} else {
redactionLogEntry.setStatus(AnnotationStatus.DECLINED);
}
redactionLogEntry.setManualRedactionUserId(manualLegalBasisChange.getUser());
redactionLogEntry.setReason(manualOverrideReason);
redactionLogEntry.setManual(true);
redactionLogEntry.setManualRedactionType(ManualRedactionType.LEGAL_BASIS_CHANGE);
var manualChange = ManualChange.from(manualLegalBasisChange)
.withManualRedactionType(ManualRedactionType.LEGAL_BASIS_CHANGE);
manualChange.withChange("legalBasis", manualLegalBasisChange.getLegalBasis());
if (manualLegalBasisChange.getSection() != null) {
manualChange.withChange("section", manualLegalBasisChange.getSection());
}
if (redactionLogEntry.isRectangle() && manualLegalBasisChange.getValue() != null) {
manualChange.withChange("value", manualLegalBasisChange.getValue());
}
redactionLogEntry.getManualChanges().add(manualChange);
}
if (mrw.getItem() instanceof ManualResizeRedaction) {
var manualResizeRedact = (ManualResizeRedaction) mrw.getItem();
String manualOverrideReason = null;
if (manualResizeRedact.getStatus().equals(AnnotationStatus.APPROVED)) {
redactionLogEntry.setStatus(AnnotationStatus.APPROVED);
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), dossierTemplateId, false, redactionLogEntry.isRedacted(), false));
redactionLogEntry.setPositions(convertPositions(manualResizeRedact.getPositions()));
redactionLogEntry.setValue(manualResizeRedact.getValue());
redactionLogEntry.setHasBeenResized(true);
redactionLogEntry.setTextBefore(manualResizeRedact.getTextBefore());
redactionLogEntry.setTextAfter(manualResizeRedact.getTextAfter());
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", resized by manual override");
} else if (manualResizeRedact.getStatus().equals(AnnotationStatus.REQUESTED)) {
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", requested to resize redact");
redactionLogEntry.setStatus(AnnotationStatus.REQUESTED);
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), dossierTemplateId, true, redactionLogEntry.isRedacted(), false));
redactionLogEntry.setPositions(convertPositions(manualResizeRedact.getPositions()));
redactionLogEntry.setTextBefore(manualResizeRedact.getTextBefore());
redactionLogEntry.setTextAfter(manualResizeRedact.getTextAfter());
} else {
redactionLogEntry.setStatus(AnnotationStatus.DECLINED);
}
redactionLogEntry.setManualRedactionUserId(manualResizeRedact.getUser());
redactionLogEntry.setReason(manualOverrideReason);
redactionLogEntry.setManual(true);
redactionLogEntry.setManualRedactionType(ManualRedactionType.RESIZE);
redactionLogEntry.getManualChanges().add(ManualChange.from(manualResizeRedact)
.withManualRedactionType(ManualRedactionType.RESIZE)
.withChange("value", manualResizeRedact.getValue()));
}
});
@@ -319,14 +305,22 @@ public class RedactionLogMergeService {
private boolean approvedAndShouldBeInDictionary(ManualRedactionEntry manualRedactionEntry) {
return manualRedactionEntry.getStatus()
.equals(AnnotationStatus.APPROVED) && (manualRedactionEntry.isAddToDictionary() || manualRedactionEntry.isAddToDossierDictionary());
return manualRedactionEntry.getStatus().equals(AnnotationStatus.APPROVED) &&
manualRedactionEntry.getProcessedDate() != null &&
(manualRedactionEntry.isAddToDictionary() || manualRedactionEntry.isAddToDossierDictionary());
}
private RedactionLogEntry createRedactionLogEntry(ManualRedactionEntry manualRedactionEntry, String id,
String dossierTemplateId) {
var addToDictionary = manualRedactionEntry.isAddToDictionary() || manualRedactionEntry.isAddToDossierDictionary();
var change = ManualChange.from(manualRedactionEntry)
.withManualRedactionType(addToDictionary ? ManualRedactionType.ADD_TO_DICTIONARY : ManualRedactionType.ADD_LOCALLY);
List<ManualChange> changeList = new ArrayList<>();
changeList.add(change);
return RedactionLogEntry.builder()
.id(id)
.color(getColorForManualAdd(manualRedactionEntry.getType(), dossierTemplateId, manualRedactionEntry.getStatus()))
@@ -340,11 +334,8 @@ public class RedactionLogMergeService {
.redacted(true)
.isHint(false)
.sectionNumber(-1)
.manual(true)
.status(manualRedactionEntry.getStatus())
.manualRedactionType(ManualRedactionType.ADD)
.manualRedactionUserId(manualRedactionEntry.getUser())
.rectangle(manualRedactionEntry.isRectangle())
.manualChanges(changeList)
.build();
}
@@ -1,10 +1,5 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import java.util.ArrayList;
import java.util.List;
import org.springframework.stereotype.Service;
import com.iqser.red.service.redaction.v1.model.CellRectangle;
import com.iqser.red.service.redaction.v1.model.Point;
import com.iqser.red.service.redaction.v1.model.SectionRectangle;
@@ -14,8 +9,11 @@ import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Cell;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
import lombok.RequiredArgsConstructor;
import org.springframework.stereotype.Service;
import java.util.ArrayList;
import java.util.List;
@Service
@RequiredArgsConstructor
@@ -1,35 +1,19 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
import java.util.Locale;
import java.util.Map;
import java.util.concurrent.atomic.AtomicInteger;
import java.util.stream.Collectors;
import org.apache.commons.collections4.CollectionUtils;
import org.springframework.stereotype.Service;
import com.iqser.red.service.redaction.v1.model.Point;
import com.iqser.red.service.redaction.v1.model.SectionArea;
import com.iqser.red.service.redaction.v1.server.classification.model.Document;
import com.iqser.red.service.redaction.v1.server.classification.model.Footer;
import com.iqser.red.service.redaction.v1.server.classification.model.Header;
import com.iqser.red.service.redaction.v1.server.classification.model.Paragraph;
import com.iqser.red.service.redaction.v1.server.classification.model.SectionText;
import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
import com.iqser.red.service.redaction.v1.server.classification.model.UnclassifiedText;
import com.iqser.red.service.redaction.v1.server.redaction.model.CellValue;
import com.iqser.red.service.redaction.v1.server.redaction.model.Image;
import com.iqser.red.service.redaction.v1.server.redaction.model.ImageType;
import com.iqser.red.service.redaction.v1.server.redaction.model.PdfImage;
import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
import com.iqser.red.service.redaction.v1.server.classification.model.*;
import com.iqser.red.service.redaction.v1.server.redaction.model.*;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Cell;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
import org.apache.commons.collections4.CollectionUtils;
import org.springframework.stereotype.Service;
import java.util.*;
import java.util.concurrent.atomic.AtomicInteger;
import java.util.stream.Collectors;
@Slf4j
@Service
@@ -55,7 +55,7 @@ public class EntitySearchUtils {
public Set<Entity> find(String inputString, Set<String> values, String type, String headline, int sectionNumber,
boolean isDictionaryEntry, boolean isDossierDictionary, Engine engine) {
boolean isDictionaryEntry, boolean isDossierDictionary, Engine engine, boolean ignoreMinLength) {
Set<Entity> found = new HashSet<>();
@@ -63,7 +63,7 @@ public class EntitySearchUtils {
String cleanValue = value.trim();
if (cleanValue.length() <= 2) {
if (!ignoreMinLength && cleanValue.length() <= 2) {
continue;
}
@@ -128,7 +128,12 @@ public class EntitySearchUtils {
for (Entity inner : entities) {
if (inner.getWord().length() < word.getWord()
.length() && inner.getStart() >= word.getStart() && inner.getEnd() <= word.getEnd() && word != inner && word.getSectionNumber() == inner.getSectionNumber()) {
wordsToRemove.add(inner);
// FIXME this is workaround for RED-3327 and should be removed in the future.
if(word.getType().contains("recommendation_") && !inner.getType().contains("recommendation_")) {
wordsToRemove.add(word);
} else {
wordsToRemove.add(inner);
}
}
}
}
@@ -1,8 +1,9 @@
package com.iqser.red.service.redaction.v1.server.settings;
import lombok.Data;
import org.springframework.boot.context.properties.ConfigurationProperties;
import lombok.Data;
@Data
@ConfigurationProperties("redaction-service")
public class RedactionServiceSettings {
@@ -17,6 +18,6 @@ public class RedactionServiceSettings {
private int analysisVersion = 1;
private boolean enableEntityRecognition = true;
private boolean nerServiceEnabled = true;
}
@@ -8,6 +8,7 @@ import org.springframework.stereotype.Service;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.dossier.file.FileType;
import com.iqser.red.service.redaction.v1.model.ImportedRedactions;
import com.iqser.red.service.redaction.v1.model.RedactionLog;
import com.iqser.red.service.redaction.v1.model.SectionGrid;
import com.iqser.red.service.redaction.v1.server.classification.model.Text;
@@ -44,6 +45,24 @@ public class RedactionStorageService {
}
public ImportedRedactions getImportedRedactions(String dossierId, String fileId) {
InputStreamResource inputStreamResource;
try {
inputStreamResource = storageService.getObject(StorageIdUtils.getStorageId(dossierId, fileId, FileType.IMPORTED_REDACTIONS));
} catch (StorageObjectDoesNotExist e) {
log.debug("Imported redactions not available.");
return null;
}
try {
return objectMapper.readValue(inputStreamResource.getInputStream(), ImportedRedactions.class);
} catch (IOException e) {
throw new RuntimeException("Could not imported redactions", e);
}
}
public RedactionLog getRedactionLog(String dossierId, String fileId) {
InputStreamResource inputStreamResource;
@@ -86,14 +105,13 @@ public class RedactionStorageService {
try {
inputStreamResource = storageService.getObject(StorageIdUtils.getStorageId(dossierId, fileId, FileType.NER_ENTITIES));
} catch (StorageObjectDoesNotExist e) {
log.debug("NER Entities not available.");
return null;
throw new NotFoundException("NER Entities are not available.");
}
try {
return objectMapper.readValue(inputStreamResource.getInputStream(), NerEntities.class);
} catch (IOException e) {
throw new RuntimeException("Could not convert NerEntities", e);
throw new RuntimeException("Could not convert NER Entities", e);
}
}
@@ -127,8 +145,6 @@ public class RedactionStorageService {
return dossierId + "/" + fileId + "." + fileType.name() + fileType.getExtension();
}
}
}
@@ -51,14 +51,14 @@ import com.amazonaws.services.s3.AmazonS3;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.AnnotationStatus;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.Comment;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.IdRemoval;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualForceRedaction;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualImageRecategorization;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualLegalBasisChange;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactionEntry;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactions;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualResizeRedaction;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.Rectangle;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.IdRemoval;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.ManualForceRedaction;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.ManualImageRecategorization;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.ManualLegalBasisChange;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.ManualRedactionEntry;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.ManualResizeRedaction;
import com.iqser.red.service.persistence.service.v1.api.model.common.JSONPrimitive;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.configuration.Colors;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.dossier.file.FileType;
@@ -113,6 +113,7 @@ public class RedactionIntegrationTest {
private static final String FORMULA = "formula";
private static final String OCR = "ocr";
private static final String DOSSIER_REDACTIONS = "dossier_redactions";
private static final String IMPORTED_REDACTION = "imported_redaction";
private static final String RECOMMENDATION_AUTHOR = "recommendation_CBI_author";
private static final String RECOMMENDATION_ADDRESS = "recommendation_CBI_address";
@@ -217,6 +218,7 @@ public class RedactionIntegrationTest {
loadDictionaryForTest();
loadTypeForTest();
loadNerForTest();
when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(0L);
when(dictionaryClient.getAllTypesForDossierTemplate(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getTypeResponse());
@@ -253,291 +255,11 @@ public class RedactionIntegrationTest {
when(dictionaryClient.getDictionaryForType(SIGNATURE + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(SIGNATURE, false));
when(dictionaryClient.getDictionaryForType(FORMULA + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(FORMULA, false));
when(dictionaryClient.getDictionaryForType(DOSSIER_REDACTIONS + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(DOSSIER_REDACTIONS, true));
when(dictionaryClient.getDictionaryForType(IMPORTED_REDACTION + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(IMPORTED_REDACTION, true));
when(dictionaryClient.getColors(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(colors);
}
private void loadDictionaryForTest() {
dictionary.computeIfAbsent(AUTHOR, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/CBI_author.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(SPONSOR, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/CBI_sponsor.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(VERTEBRATE, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/vertebrate.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(ADDRESS, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/CBI_address.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(NO_REDACTION_INDICATOR, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/no_redaction_indicator.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(REDACTION_INDICATOR, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/redaction_indicator.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(HINT_ONLY, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/hint_only.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(MUST_REDACT, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/must_redact.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(PUBLISHED_INFORMATION, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/published_information.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(TEST_METHOD, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/test_method.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(PII, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/PII.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(RECOMMENDATION_AUTHOR, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/recommendation_CBI_author.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(RECOMMENDATION_ADDRESS, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/recommendation_CBI_address.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(FALSE_POSITIVE, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/false_positive.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(PURITY, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/purity.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(IMAGE, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/empty.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(OCR, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/empty.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(LOGO, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/empty.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(SIGNATURE, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/empty.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(FORMULA, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/empty.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dossierDictionary.computeIfAbsent(DOSSIER_REDACTIONS, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/dossier_redactions.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
}
private String cleanDictionaryEntry(String entry) {
return TextNormalizationUtilities.removeHyphenLineBreaks(entry).replaceAll("\\n", " ");
}
private void loadTypeForTest() {
typeColorMap.put(VERTEBRATE, "#ff85f7");
typeColorMap.put(ADDRESS, "#ffe187");
typeColorMap.put(AUTHOR, "#ffe187");
typeColorMap.put(SPONSOR, "#85ebff");
typeColorMap.put(NO_REDACTION_INDICATOR, "#be85ff");
typeColorMap.put(REDACTION_INDICATOR, "#caff85");
typeColorMap.put(HINT_ONLY, "#abc0c4");
typeColorMap.put(MUST_REDACT, "#fab4c0");
typeColorMap.put(PUBLISHED_INFORMATION, "#85ebff");
typeColorMap.put(TEST_METHOD, "#91fae8");
typeColorMap.put(PII, "#66ccff");
typeColorMap.put(RECOMMENDATION_AUTHOR, "#8df06c");
typeColorMap.put(RECOMMENDATION_ADDRESS, "#8df06c");
typeColorMap.put(FALSE_POSITIVE, "#ffffff");
typeColorMap.put(PURITY, "#ffe187");
typeColorMap.put(IMAGE, "#fcc5fb");
typeColorMap.put(OCR, "#fcc5fb");
typeColorMap.put(LOGO, "#ffe187");
typeColorMap.put(FORMULA, "#ffe187");
typeColorMap.put(SIGNATURE, "#ffe187");
hintTypeMap.put(VERTEBRATE, true);
hintTypeMap.put(ADDRESS, false);
hintTypeMap.put(AUTHOR, false);
hintTypeMap.put(SPONSOR, false);
hintTypeMap.put(NO_REDACTION_INDICATOR, true);
hintTypeMap.put(REDACTION_INDICATOR, true);
hintTypeMap.put(HINT_ONLY, true);
hintTypeMap.put(MUST_REDACT, true);
hintTypeMap.put(PUBLISHED_INFORMATION, true);
hintTypeMap.put(TEST_METHOD, true);
hintTypeMap.put(PII, false);
hintTypeMap.put(RECOMMENDATION_AUTHOR, false);
hintTypeMap.put(RECOMMENDATION_ADDRESS, false);
hintTypeMap.put(FALSE_POSITIVE, true);
hintTypeMap.put(PURITY, false);
hintTypeMap.put(IMAGE, true);
hintTypeMap.put(OCR, true);
hintTypeMap.put(FORMULA, false);
hintTypeMap.put(LOGO, false);
hintTypeMap.put(SIGNATURE, false);
hintTypeMap.put(DOSSIER_REDACTIONS, false);
caseInSensitiveMap.put(VERTEBRATE, true);
caseInSensitiveMap.put(ADDRESS, false);
caseInSensitiveMap.put(AUTHOR, false);
caseInSensitiveMap.put(SPONSOR, false);
caseInSensitiveMap.put(NO_REDACTION_INDICATOR, true);
caseInSensitiveMap.put(REDACTION_INDICATOR, true);
caseInSensitiveMap.put(HINT_ONLY, true);
caseInSensitiveMap.put(MUST_REDACT, true);
caseInSensitiveMap.put(PUBLISHED_INFORMATION, true);
caseInSensitiveMap.put(TEST_METHOD, false);
caseInSensitiveMap.put(PII, false);
caseInSensitiveMap.put(RECOMMENDATION_AUTHOR, false);
caseInSensitiveMap.put(RECOMMENDATION_ADDRESS, false);
caseInSensitiveMap.put(FALSE_POSITIVE, false);
caseInSensitiveMap.put(PURITY, false);
caseInSensitiveMap.put(IMAGE, true);
caseInSensitiveMap.put(OCR, true);
caseInSensitiveMap.put(SIGNATURE, true);
caseInSensitiveMap.put(LOGO, true);
caseInSensitiveMap.put(FORMULA, true);
caseInSensitiveMap.put(DOSSIER_REDACTIONS, false);
recommendationTypeMap.put(VERTEBRATE, false);
recommendationTypeMap.put(ADDRESS, false);
recommendationTypeMap.put(AUTHOR, false);
recommendationTypeMap.put(SPONSOR, false);
recommendationTypeMap.put(NO_REDACTION_INDICATOR, false);
recommendationTypeMap.put(REDACTION_INDICATOR, false);
recommendationTypeMap.put(HINT_ONLY, false);
recommendationTypeMap.put(MUST_REDACT, false);
recommendationTypeMap.put(PUBLISHED_INFORMATION, false);
recommendationTypeMap.put(TEST_METHOD, false);
recommendationTypeMap.put(PII, false);
recommendationTypeMap.put(RECOMMENDATION_AUTHOR, true);
recommendationTypeMap.put(RECOMMENDATION_ADDRESS, true);
recommendationTypeMap.put(FALSE_POSITIVE, false);
recommendationTypeMap.put(PURITY, false);
recommendationTypeMap.put(IMAGE, false);
recommendationTypeMap.put(OCR, false);
recommendationTypeMap.put(FORMULA, false);
recommendationTypeMap.put(SIGNATURE, false);
recommendationTypeMap.put(LOGO, false);
recommendationTypeMap.put(DOSSIER_REDACTIONS, false);
rankTypeMap.put(FALSE_POSITIVE, 160);
rankTypeMap.put(PURITY, 155);
rankTypeMap.put(PII, 150);
rankTypeMap.put(ADDRESS, 140);
rankTypeMap.put(AUTHOR, 130);
rankTypeMap.put(SPONSOR, 120);
rankTypeMap.put(VERTEBRATE, 110);
rankTypeMap.put(MUST_REDACT, 100);
rankTypeMap.put(REDACTION_INDICATOR, 90);
rankTypeMap.put(NO_REDACTION_INDICATOR, 80);
rankTypeMap.put(PUBLISHED_INFORMATION, 70);
rankTypeMap.put(TEST_METHOD, 60);
rankTypeMap.put(HINT_ONLY, 50);
rankTypeMap.put(RECOMMENDATION_AUTHOR, 40);
rankTypeMap.put(RECOMMENDATION_ADDRESS, 30);
rankTypeMap.put(IMAGE, 30);
rankTypeMap.put(OCR, 29);
rankTypeMap.put(LOGO, 28);
rankTypeMap.put(SIGNATURE, 27);
rankTypeMap.put(FORMULA, 26);
rankTypeMap.put(DOSSIER_REDACTIONS, 200);
colors.setDefaultColor("#acfc00");
colors.setNotRedacted("#cccccc");
colors.setRequestAdd("#04b093");
colors.setRequestRemove("#04b093");
}
private List<Type> getTypeResponse() {
return typeColorMap.entrySet()
.stream()
.map(typeColor -> Type.builder()
.id(typeColor.getKey() + ":" + TEST_DOSSIER_TEMPLATE_ID)
.type(typeColor.getKey())
.dossierTemplateId(TEST_DOSSIER_TEMPLATE_ID)
.hexColor(typeColor.getValue())
.isHint(hintTypeMap.get(typeColor.getKey()))
.isCaseInsensitive(caseInSensitiveMap.get(typeColor.getKey()))
.isRecommendation(recommendationTypeMap.get(typeColor.getKey()))
.rank(rankTypeMap.get(typeColor.getKey()))
.build())
.collect(Collectors.toList());
}
private Type getDictionaryResponse(String type, boolean isDossierDictionary) {
return Type.builder()
.id(type + ":" + TEST_DOSSIER_TEMPLATE_ID)
.hexColor(typeColorMap.get(type))
.entries(isDossierDictionary ? toDictionaryEntry(dossierDictionary.get(type)) : toDictionaryEntry(dictionary.get(type)))
.isHint(hintTypeMap.get(type))
.isCaseInsensitive(caseInSensitiveMap.get(type))
.isRecommendation(recommendationTypeMap.get(type))
.rank(rankTypeMap.get(type))
.build();
}
private List<DictionaryEntry> toDictionaryEntry(List<String> entries) {
List<DictionaryEntry> dictionaryEntries = new ArrayList<>();
entries.forEach(entry -> {
dictionaryEntries.add(DictionaryEntry.builder()
.value(entry)
.version(reanlysisVersions.getOrDefault(entry, 0L))
.deleted(deleted.contains(entry))
.build());
});
return dictionaryEntries;
}
@Test
public void test270Rotated() {
@@ -579,9 +301,7 @@ public class RedactionIntegrationTest {
duplicates.computeIfAbsent(entry.getId(), v -> new ArrayList<>()).add(entry);
});
duplicates.entrySet().forEach(entry -> {
assertThat(entry.getValue().size()).isEqualTo(1);
});
duplicates.forEach((key, value) -> assertThat(value.size()).isEqualTo(1));
dictionary.get(AUTHOR).add("Drinking water");
when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(1L);
@@ -846,6 +566,7 @@ public class RedactionIntegrationTest {
System.out.println("Output file:" + outputFileName);
}
@Test
public void testChangeComputation() throws IOException {
@@ -861,24 +582,27 @@ public class RedactionIntegrationTest {
dictionary.get(AUTHOR).add("report");
reanlysisVersions.put("report", 2L);
when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(2L);
when(dictionaryClient.getDictionaryForType(AUTHOR +":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(AUTHOR, false));
when(dictionaryClient.getDictionaryForType(AUTHOR + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(AUTHOR, false));
analyzeService.reanalyze(request);
dictionary.get(AUTHOR).add("assessment report");
reanlysisVersions.put("assessment report", 3L);
when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(3L);
when(dictionaryClient.getDictionaryForType(AUTHOR +":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(AUTHOR, false));
when(dictionaryClient.getDictionaryForType(AUTHOR + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(AUTHOR, false));
analyzeService.reanalyze(request);
when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(3L);
when(dictionaryClient.getDictionaryForType(AUTHOR +":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(AUTHOR, false));
when(dictionaryClient.getDictionaryForType(AUTHOR + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(AUTHOR, false));
analyzeService.reanalyze(request);
var redactionLog = redactionStorageService.getRedactionLog(TEST_DOSSIER_ID, TEST_FILE_ID);
var redactionLog = redactionStorageService.getRedactionLog(TEST_DOSSIER_ID, TEST_FILE_ID);
var changes = redactionLog.getRedactionLogEntry().stream().filter(entry ->
entry.getValue() != null && entry.getValue().equals("report"))
.findFirst().get().getChanges();
var changes = redactionLog.getRedactionLogEntry()
.stream()
.filter(entry -> entry.getValue() != null && entry.getValue().equals("report"))
.findFirst()
.get()
.getChanges();
assertThat(changes.size()).isEqualTo(2);
@@ -892,6 +616,7 @@ public class RedactionIntegrationTest {
}
}
@Test
public void redactionTest() throws IOException {
@@ -1037,8 +762,6 @@ public class RedactionIntegrationTest {
@Test
public void testManualRedaction() throws IOException {
// 675eba69b0c2917de55462c817adaa05
System.out.println("testManualRedaction");
long start = System.currentTimeMillis();
ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Single Table.pdf");
@@ -1089,8 +812,6 @@ public class RedactionIntegrationTest {
.page(1)
.build()));
// manualRedactions.getEntriesToAdd().add(manualRedactionEntry);
AnalyzeRequest request = prepareStorage(pdfFileResource.getInputStream());
request.setManualRedactions(manualRedactions);
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
@@ -1236,34 +957,6 @@ public class RedactionIntegrationTest {
}
@SneakyThrows
private AnalyzeRequest prepareStorage(String file) {
ClassPathResource pdfFileResource = new ClassPathResource(file);
return prepareStorage(pdfFileResource.getInputStream());
}
@SneakyThrows
private AnalyzeRequest prepareStorage(InputStream stream) {
AnalyzeRequest request = AnalyzeRequest.builder()
.dossierTemplateId(TEST_DOSSIER_TEMPLATE_ID)
.dossierId(TEST_DOSSIER_ID)
.fileId(TEST_FILE_ID)
.lastProcessed(OffsetDateTime.now())
.build();
var bytes = IOUtils.toByteArray(stream);
storageService.storeObject(RedactionStorageService.StorageIdUtils.getStorageId(TEST_DOSSIER_ID, TEST_FILE_ID, FileType.ORIGIN), bytes);
return request;
}
@Test
public void sponsorCompanyTest() throws IOException {
@@ -1517,7 +1210,8 @@ public class RedactionIntegrationTest {
fileOutputStream.write(annotateResponse.getDocument());
}
var surroundingTextResult = manualRedactionSurroundingTextService.addSurroundingText(TEST_DOSSIER_ID, TEST_FILE_ID, manualRedactions);
var surroundingTextResult = manualRedactionSurroundingTextService.addSurroundingText(TEST_DOSSIER_ID, TEST_FILE_ID, manualRedactions)
.getManualRedactions();
surroundingTextResult.getEntriesToAdd().forEach(addEntry -> {
assertThat(addEntry.getTextAfter()).isNotEmpty();
});
@@ -1525,6 +1219,117 @@ public class RedactionIntegrationTest {
}
private void loadDictionaryForTest() {
dictionary.computeIfAbsent(AUTHOR, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/CBI_author.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(SPONSOR, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/CBI_sponsor.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(VERTEBRATE, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/vertebrate.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(ADDRESS, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/CBI_address.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(NO_REDACTION_INDICATOR, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/no_redaction_indicator.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(REDACTION_INDICATOR, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/redaction_indicator.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(HINT_ONLY, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/hint_only.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(MUST_REDACT, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/must_redact.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(PUBLISHED_INFORMATION, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/published_information.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(TEST_METHOD, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/test_method.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(PII, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/PII.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(RECOMMENDATION_AUTHOR, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/recommendation_CBI_author.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(RECOMMENDATION_ADDRESS, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/recommendation_CBI_address.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(FALSE_POSITIVE, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/false_positive.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(PURITY, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/purity.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(IMAGE, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/empty.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(OCR, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/empty.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(LOGO, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/empty.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(SIGNATURE, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/empty.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(FORMULA, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/empty.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dossierDictionary.computeIfAbsent(DOSSIER_REDACTIONS, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/dossier_redactions.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dossierDictionary.put(IMPORTED_REDACTION, new ArrayList<>());
}
private static String loadFromClassPath(String path) {
URL resource = ResourceLoader.class.getClassLoader().getResource(path);
@@ -1561,4 +1366,243 @@ public class RedactionIntegrationTest {
}
}
private void loadTypeForTest() {
typeColorMap.put(VERTEBRATE, "#ff85f7");
typeColorMap.put(ADDRESS, "#ffe187");
typeColorMap.put(AUTHOR, "#ffe187");
typeColorMap.put(SPONSOR, "#85ebff");
typeColorMap.put(NO_REDACTION_INDICATOR, "#be85ff");
typeColorMap.put(REDACTION_INDICATOR, "#caff85");
typeColorMap.put(HINT_ONLY, "#abc0c4");
typeColorMap.put(MUST_REDACT, "#fab4c0");
typeColorMap.put(PUBLISHED_INFORMATION, "#85ebff");
typeColorMap.put(TEST_METHOD, "#91fae8");
typeColorMap.put(PII, "#66ccff");
typeColorMap.put(RECOMMENDATION_AUTHOR, "#8df06c");
typeColorMap.put(RECOMMENDATION_ADDRESS, "#8df06c");
typeColorMap.put(FALSE_POSITIVE, "#ffffff");
typeColorMap.put(PURITY, "#ffe187");
typeColorMap.put(IMAGE, "#fcc5fb");
typeColorMap.put(OCR, "#fcc5fb");
typeColorMap.put(LOGO, "#ffe187");
typeColorMap.put(FORMULA, "#ffe187");
typeColorMap.put(SIGNATURE, "#ffe187");
typeColorMap.put(IMPORTED_REDACTION, "#32a852");
hintTypeMap.put(VERTEBRATE, true);
hintTypeMap.put(ADDRESS, false);
hintTypeMap.put(AUTHOR, false);
hintTypeMap.put(SPONSOR, false);
hintTypeMap.put(NO_REDACTION_INDICATOR, true);
hintTypeMap.put(REDACTION_INDICATOR, true);
hintTypeMap.put(HINT_ONLY, true);
hintTypeMap.put(MUST_REDACT, true);
hintTypeMap.put(PUBLISHED_INFORMATION, true);
hintTypeMap.put(TEST_METHOD, true);
hintTypeMap.put(PII, false);
hintTypeMap.put(RECOMMENDATION_AUTHOR, false);
hintTypeMap.put(RECOMMENDATION_ADDRESS, false);
hintTypeMap.put(FALSE_POSITIVE, true);
hintTypeMap.put(PURITY, false);
hintTypeMap.put(IMAGE, true);
hintTypeMap.put(OCR, true);
hintTypeMap.put(FORMULA, false);
hintTypeMap.put(LOGO, false);
hintTypeMap.put(SIGNATURE, false);
hintTypeMap.put(DOSSIER_REDACTIONS, false);
hintTypeMap.put(IMPORTED_REDACTION, false);
caseInSensitiveMap.put(VERTEBRATE, true);
caseInSensitiveMap.put(ADDRESS, false);
caseInSensitiveMap.put(AUTHOR, false);
caseInSensitiveMap.put(SPONSOR, false);
caseInSensitiveMap.put(NO_REDACTION_INDICATOR, true);
caseInSensitiveMap.put(REDACTION_INDICATOR, true);
caseInSensitiveMap.put(HINT_ONLY, true);
caseInSensitiveMap.put(MUST_REDACT, true);
caseInSensitiveMap.put(PUBLISHED_INFORMATION, true);
caseInSensitiveMap.put(TEST_METHOD, false);
caseInSensitiveMap.put(PII, false);
caseInSensitiveMap.put(RECOMMENDATION_AUTHOR, false);
caseInSensitiveMap.put(RECOMMENDATION_ADDRESS, false);
caseInSensitiveMap.put(FALSE_POSITIVE, false);
caseInSensitiveMap.put(PURITY, false);
caseInSensitiveMap.put(IMAGE, true);
caseInSensitiveMap.put(OCR, true);
caseInSensitiveMap.put(SIGNATURE, true);
caseInSensitiveMap.put(LOGO, true);
caseInSensitiveMap.put(FORMULA, true);
caseInSensitiveMap.put(DOSSIER_REDACTIONS, false);
caseInSensitiveMap.put(IMPORTED_REDACTION, false);
recommendationTypeMap.put(VERTEBRATE, false);
recommendationTypeMap.put(ADDRESS, false);
recommendationTypeMap.put(AUTHOR, false);
recommendationTypeMap.put(SPONSOR, false);
recommendationTypeMap.put(NO_REDACTION_INDICATOR, false);
recommendationTypeMap.put(REDACTION_INDICATOR, false);
recommendationTypeMap.put(HINT_ONLY, false);
recommendationTypeMap.put(MUST_REDACT, false);
recommendationTypeMap.put(PUBLISHED_INFORMATION, false);
recommendationTypeMap.put(TEST_METHOD, false);
recommendationTypeMap.put(PII, false);
recommendationTypeMap.put(RECOMMENDATION_AUTHOR, true);
recommendationTypeMap.put(RECOMMENDATION_ADDRESS, true);
recommendationTypeMap.put(FALSE_POSITIVE, false);
recommendationTypeMap.put(PURITY, false);
recommendationTypeMap.put(IMAGE, false);
recommendationTypeMap.put(OCR, false);
recommendationTypeMap.put(FORMULA, false);
recommendationTypeMap.put(SIGNATURE, false);
recommendationTypeMap.put(LOGO, false);
recommendationTypeMap.put(DOSSIER_REDACTIONS, false);
recommendationTypeMap.put(IMPORTED_REDACTION, false);
rankTypeMap.put(FALSE_POSITIVE, 160);
rankTypeMap.put(PURITY, 155);
rankTypeMap.put(PII, 150);
rankTypeMap.put(ADDRESS, 140);
rankTypeMap.put(AUTHOR, 130);
rankTypeMap.put(SPONSOR, 120);
rankTypeMap.put(VERTEBRATE, 110);
rankTypeMap.put(MUST_REDACT, 100);
rankTypeMap.put(REDACTION_INDICATOR, 90);
rankTypeMap.put(NO_REDACTION_INDICATOR, 80);
rankTypeMap.put(PUBLISHED_INFORMATION, 70);
rankTypeMap.put(TEST_METHOD, 60);
rankTypeMap.put(HINT_ONLY, 50);
rankTypeMap.put(RECOMMENDATION_AUTHOR, 40);
rankTypeMap.put(RECOMMENDATION_ADDRESS, 30);
rankTypeMap.put(IMAGE, 30);
rankTypeMap.put(OCR, 29);
rankTypeMap.put(LOGO, 28);
rankTypeMap.put(SIGNATURE, 27);
rankTypeMap.put(FORMULA, 26);
rankTypeMap.put(DOSSIER_REDACTIONS, 200);
rankTypeMap.put(IMPORTED_REDACTION, 200);
colors.setDefaultColor("#acfc00");
colors.setNotRedacted("#cccccc");
colors.setRequestAdd("#04b093");
colors.setRequestRemove("#04b093");
}
@SneakyThrows
private void loadNerForTest() {
ClassPathResource responseJson = new ClassPathResource("files/ner_response.json");
var bytes = IOUtils.toByteArray(responseJson.getInputStream());
storageService.storeObject(RedactionStorageService.StorageIdUtils.getStorageId(TEST_DOSSIER_ID, TEST_FILE_ID, FileType.NER_ENTITIES), bytes);
}
private List<Type> getTypeResponse() {
return typeColorMap.entrySet()
.stream()
.map(typeColor -> Type.builder()
.id(typeColor.getKey() + ":" + TEST_DOSSIER_TEMPLATE_ID)
.type(typeColor.getKey())
.dossierTemplateId(TEST_DOSSIER_TEMPLATE_ID)
.hexColor(typeColor.getValue())
.isHint(hintTypeMap.get(typeColor.getKey()))
.isCaseInsensitive(caseInSensitiveMap.get(typeColor.getKey()))
.isRecommendation(recommendationTypeMap.get(typeColor.getKey()))
.rank(rankTypeMap.get(typeColor.getKey()))
.build())
.collect(Collectors.toList());
}
private Type getDictionaryResponse(String type, boolean isDossierDictionary) {
return Type.builder()
.id(type + ":" + TEST_DOSSIER_TEMPLATE_ID)
.hexColor(typeColorMap.get(type))
.entries(isDossierDictionary ? toDictionaryEntry(dossierDictionary.get(type)) : toDictionaryEntry(dictionary.get(type)))
.isHint(hintTypeMap.get(type))
.isCaseInsensitive(caseInSensitiveMap.get(type))
.isRecommendation(recommendationTypeMap.get(type))
.rank(rankTypeMap.get(type))
.build();
}
private String cleanDictionaryEntry(String entry) {
return TextNormalizationUtilities.removeHyphenLineBreaks(entry).replaceAll("\\n", " ");
}
private List<DictionaryEntry> toDictionaryEntry(List<String> entries) {
List<DictionaryEntry> dictionaryEntries = new ArrayList<>();
entries.forEach(entry -> {
dictionaryEntries.add(DictionaryEntry.builder()
.value(entry)
.version(reanlysisVersions.getOrDefault(entry, 0L))
.deleted(deleted.contains(entry))
.build());
});
return dictionaryEntries;
}
@Test
public void testImportedRedactions() throws IOException {
String outputFileName = OsUtils.getTemporaryDirectory() + "/Annotated.pdf";
ClassPathResource pdfFileResource = new ClassPathResource("files/ImportedRedactions/ImportedRedactions.pdf");
ClassPathResource importedRedactions = new ClassPathResource("files/ImportedRedactions/ImportedRedactions.json");
AnalyzeRequest request = prepareStorage(pdfFileResource.getInputStream());
storageService.storeObject(RedactionStorageService.StorageIdUtils.getStorageId(TEST_DOSSIER_ID, TEST_FILE_ID, FileType.IMPORTED_REDACTIONS), IOUtils.toByteArray(importedRedactions.getInputStream()));
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
AnalyzeResult result = analyzeService.analyze(request);
var redactionLog = redactionStorageService.getRedactionLog(TEST_DOSSIER_ID, TEST_FILE_ID);
AnnotateResponse annotateResponse = redactionController.annotate(AnnotateRequest.builder()
.dossierId(TEST_DOSSIER_ID)
.fileId(TEST_FILE_ID)
.build());
try (FileOutputStream fileOutputStream = new FileOutputStream(outputFileName)) {
fileOutputStream.write(annotateResponse.getDocument());
}
}
@SneakyThrows
private AnalyzeRequest prepareStorage(InputStream stream) {
AnalyzeRequest request = AnalyzeRequest.builder()
.dossierTemplateId(TEST_DOSSIER_TEMPLATE_ID)
.dossierId(TEST_DOSSIER_ID)
.fileId(TEST_FILE_ID)
.lastProcessed(OffsetDateTime.now())
.build();
var bytes = IOUtils.toByteArray(stream);
storageService.storeObject(RedactionStorageService.StorageIdUtils.getStorageId(TEST_DOSSIER_ID, TEST_FILE_ID, FileType.ORIGIN), bytes);
return request;
}
@SneakyThrows
private AnalyzeRequest prepareStorage(String file) {
ClassPathResource pdfFileResource = new ClassPathResource(file);
return prepareStorage(pdfFileResource.getInputStream());
}
}
@@ -0,0 +1 @@
{"importedRedactions":{"1":[{"id":"755273b5ddc6933eff7f6b6e055c803f","positions":[{"topLeft":{"x":275.0,"y":520.504},"width":55.675,"height":15.582,"page":1}]},{"id":"5e517d2c890272fc140578a26971b459","positions":[{"topLeft":{"x":164.0,"y":316.492},"width":50.7,"height":15.658,"page":1},{"topLeft":{"x":127.0,"y":302.613},"width":119.675,"height":14.902,"page":1},{"topLeft":{"x":81.0,"y":289.622},"width":210.025,"height":14.846,"page":1},{"topLeft":{"x":136.0,"y":275.912},"width":94.2,"height":13.033,"page":1},{"topLeft":{"x":158.0,"y":261.402},"width":52.793,"height":16.218,"page":1},{"topLeft":{"x":177.0,"y":247.413},"width":15.507,"height":16.148,"page":1}]}]}}
@@ -0,0 +1,12 @@
{
"result": {
"1": [
{
"value": "Mannheim",
"startOffset": 0,
"endOffset": 8,
"type": "CITY"
}
]
}
}