Compare commits

...
82 Commits
Author SHA1 Message Date
deiflaender d2807e0ff1 RED-4009: Fixed NPE if comments are null in RedactionLogMergeService 2022-05-10 13:20:57 +02:00
Timo Bejan e49bbfca88 Pull request #387: RED-3800 switched jackson for dsl-json for internal non-rest related operations
Merge in RED/redaction-service from RED-3800-dsljson to master

* commit '7967453c676094efdc438eea1cca2b9e00856c0d':
  RED-3800 api cleanup
  RED-3800 api cleanup
  RED-3800 switched jackson for dsl-json for internal non-rest related operations
2022-05-09 21:14:04 +02:00
Timo Bejan 7967453c67 RED-3800 api cleanup 2022-05-09 22:10:53 +03:00
Timo Bejan a3d002929d RED-3800 api cleanup 2022-05-09 22:03:33 +03:00
Timo Bejan 8a44d6299c RED-3800 switched jackson for dsl-json for internal non-rest related operations 2022-05-09 22:00:01 +03:00
Timo Bejan 78de7371a0 Pull request #385: RED-3946 - quotation-mark fix
Merge in RED/redaction-service from RED-3946-qf to master

* commit 'df2fcd2e5e48298131ebf7a00bf2ed80a9fc2d96':
  RED-3946 - quotation-mark fix
2022-05-09 14:47:03 +02:00
Dominique Eiflaender 924f791e4d Pull request #386: RED-3959: Do not remove entities on larger false_recommendactions
Merge in RED/redaction-service from RED-3959 to master

* commit '542bbb294a27bf2eb2832a144d239b820bbc0b5f':
  RED-3959: Do not remove entities on larger false_recommendactions
2022-05-09 12:34:13 +02:00
deiflaender 542bbb294a RED-3959: Do not remove entities on larger false_recommendactions 2022-05-09 12:27:36 +02:00
Timo Bejan df2fcd2e5e RED-3946 - quotation-mark fix 2022-05-09 12:14:09 +03:00
Timo Bejan 8e819a0d26 Pull request #384: RED-3992
Merge in RED/redaction-service from RED-3992 to master

* commit '01e7115d301d8706962390b76af0769eab67c1fe':
  RED-3992 - Fixed PMD
  RED-3992 - Replaced naive approach with aho corassick string search. Cleaned up code. reduced ammount of unnecesary conversions/invocations
  RED-3992 - Replaced naive approach with aho corassick string search. Cleaned up code. reduced ammount of unnecesary conversions/invocations
  RED-3800 Exception handling for processed files
2022-05-09 10:05:50 +02:00
Timo Bejan 01e7115d30 RED-3992 - Fixed PMD 2022-05-09 09:02:11 +03:00
Timo Bejan 747323f882 RED-3992 - Replaced naive approach with aho corassick string search. Cleaned up code. reduced ammount of unnecesary conversions/invocations 2022-05-09 08:44:42 +03:00
Timo Bejan 729a7334d9 Merge branch 'release/3.107.x' into test-performance 2022-05-06 10:28:47 +03:00
Timo Bejan 36967cab2c RED-3992 - Replaced naive approach with aho corassick string search. Cleaned up code. reduced ammount of unnecesary conversions/invocations 2022-05-06 10:28:12 +03:00
Timo Bejan b820463fff RED-3800 Exception handling for processed files 2022-05-04 12:09:46 +03:00
Timo Bejan cfd9d7665b Pull request #383: RED-3946 - added alternative quatation marks as separators
Merge in RED/redaction-service from RED-3946 to master

* commit '23d84980cd1528b1276e28aab81bb5bf0a682256':
  RED-3946 - added alternative quatation marks as separators
2022-05-03 17:15:12 +02:00
Timo Bejan 23d84980cd RED-3946 - added alternative quatation marks as separators 2022-05-03 18:12:07 +03:00
Timo Bejan 314f7ebdd9 Pull request #382: Pdftron api cleanup
Merge in RED/redaction-service from pdftron-api-cleanup to master

* commit 'f666a0330161daed8d3f59189bbe258327926995':
  RED-3800 code cleanup
  RED-3800 code cleanup
2022-05-03 12:26:22 +02:00
Timo Bejan f666a03301 RED-3800 code cleanup 2022-05-03 13:23:10 +03:00
Timo Bejan 313ec32d30 RED-3800 code cleanup 2022-05-03 13:04:00 +03:00
Timo Bejan 76dca41299 Pull request #381: RED-3915 - source id
Merge in RED/redaction-service from RED-3915 to master

* commit 'f21e48e3d75c78e0ce5cf92a614e92e9c721eede':
  RED-3915 - source id
2022-04-25 15:03:29 +02:00
Timo Bejan f21e48e3d7 RED-3915 - source id 2022-04-25 15:46:12 +03:00
Dominique Eiflaender bbd60e4bf4 Pull request #379: RED-3774: Always prefer entities over recommendactions
Merge in RED/redaction-service from RED-3774 to master

* commit 'ecf794ff37ae5cdeb8aa63f69d6e5205c6da1271':
  RED-3774: Always prefer entities over recommendactions
2022-04-20 12:20:01 +02:00
deiflaender ecf794ff37 RED-3774: Always prefer entities over recommendactions 2022-04-20 12:07:31 +02:00
Dominique Eiflaender 5d8f44d55d Pull request #378: RED-3658: Fixed annotation positions for document with rotation = 180 and text direction = 180
Merge in RED/redaction-service from RED-3658 to master

* commit '513fbbb38d2b9efff6b58489c518db53961e9464':
  RED-3658: Fixed annotation positions for document with rotation = 180 and text direction = 180
2022-04-20 10:17:34 +02:00
deiflaender 513fbbb38d RED-3658: Fixed annotation positions for document with rotation = 180 and text direction = 180 2022-04-20 09:58:26 +02:00
Timo Bejan 6178efb7ef Pull request #376: soft delete types RED-3880
Merge in RED/redaction-service from RED-3880 to master

* commit '7a9bb45b6dbfde2ef68c4ac19d4a144a272e5571':
  soft delete types RED-3880
  soft delete types RED-3880
2022-04-19 14:01:31 +02:00
Timo Bejan 7a9bb45b6d soft delete types RED-3880 2022-04-19 14:54:44 +03:00
Timo Bejan 00f2a0cb82 soft delete types RED-3880 2022-04-19 14:32:23 +03:00
Timo Bejan 1eb0485dca Pull request #375: RED-3800 java-18 support
Merge in RED/redaction-service from JAVA-18-support to master

* commit 'be15d38065fc6915f815a586d468235b38362e93':
  RED-3800 java-18 support
2022-04-14 10:52:02 +02:00
Timo Bejan be15d38065 RED-3800 java-18 support 2022-04-14 11:44:47 +03:00
deiflaender f154065824 RED-3877: Fixed missing images after migration 2022-04-14 10:38:30 +02:00
Dominique Eiflaender d4b0de9184 Pull request #374: RED-3616: Fixed removing not redaction images that intersects imported redactions
Merge in RED/redaction-service from RED-3616-11 to master

* commit 'fbd9bc71a80ba7788992c6213fd88ce649e127e2':
  RED-3616: Fixed removing not redaction images that intersects imported redactions
2022-04-12 11:18:53 +02:00
deiflaender fbd9bc71a8 RED-3616: Fixed removing not redaction images that intersects imported redactions 2022-04-12 11:09:25 +02:00
Dominique Eiflaender c963c7ac32 Pull request #373: RED-3666: Added rule function Section containsRegEx
Merge in RED/redaction-service from RED-3666 to master

* commit '404fd25be0e8ee20528c1f9491f85d8b695a2433':
  RED-3666: Added rule function Section containsRegEx
2022-04-11 13:02:02 +02:00
deiflaender 404fd25be0 RED-3666: Added rule function Section containsRegEx 2022-04-11 12:57:57 +02:00
Kresnadi Budisantoso efd53066c4 Pull request #371: RED-3761 Fix expandByRegEx and expandByPrefixRegEx
Merge in RED/redaction-service from kbudisantoso/RED-3761-fix-filter-expanded to master

* commit '5b5d898b933c3ae79fb7cb07a6105b15d2952f8e':
  RED-3761 Fix expandByRegEx and expandByPrefixRegEx
2022-04-11 12:51:57 +02:00
Kresnadi Budisantoso 5b5d898b93 RED-3761 Fix expandByRegEx and expandByPrefixRegEx
Adjusted the overlap test to ignore if the compared entities are subsets
of each other (start or end position is equal). The `removeEntitiesContainedInLarger`
instruction will remove the subset entity.
2022-04-11 11:54:30 +02:00
Dominique Eiflaender cf75ac56cc Pull request #372: RED-3802: Fixed prefer redactions over recommendations
Merge in RED/redaction-service from RED-3802 to master

* commit '1a6a1a008f76897f01f10dd40ea0307c2c84175c':
  RED-3802: Fixed prefer redactions over recommendations
2022-04-11 11:04:55 +02:00
deiflaender 1a6a1a008f RED-3802: Fixed prefer redactions over recommendations 2022-04-11 11:00:07 +02:00
Ali Oezyetimoglu e19b4573bb Pull request #370: RED-3809: Upgrade to latest spring version
Merge in RED/redaction-service from RED-3809-rs1 to master

* commit '150ee92c1e63de2145a1a093e6c6fe7820b7256d':
  RED-3809: Upgrade to latest spring version
2022-04-08 11:40:40 +02:00
aoezyetimoglu 150ee92c1e RED-3809: Upgrade to latest spring version 2022-04-08 11:19:53 +02:00
Kresnadi Budisantoso 7988a8de66 Pull request #369: RED-3761 prevent compiledPrefixPattern to be nullable by testing prefixPattern parameter
Merge in RED/redaction-service from kbudisantoso/RED-3761-prevent-nullable to master

* commit '0014d7725ab3f82d2fba4f0677c3966324504876':
  RED-3761 prevent compiledPrefixPattern to be nullable by testing prefixPattern parameter
2022-04-06 12:52:24 +02:00
Kresnadi Budisantoso 0014d7725a RED-3761 prevent compiledPrefixPattern to be nullable by testing prefixPattern parameter 2022-04-06 11:38:20 +02:00
Christoph Schabert 55f608cf99 Pull request #368: verify version finding
Merge in RED/redaction-service from autoRelease to master

* commit '52e5c58d6e2a30744b3c9b5220edb102b457c8b0':
  verify version finding
2022-04-06 11:03:54 +02:00
cschabert f3ad0749b8 add build version output 2022-04-05 11:15:37 +02:00
Dominique Eiflaender 0f0aee9480 Pull request #367: RED-3616: Do not remove annotation that intersects with skipped imported redactions
Merge in RED/redaction-service from RED-3616 to master

* commit '941448492bfe294634a8c3c309f237034245e842':
  RED-3616: Do not remove annotation that intersects with skipped imported redactions
2022-04-05 10:22:08 +02:00
cschabert ff22dd1a49 verify version check 2022-04-05 09:26:05 +02:00
cschabert 52e5c58d6e verify version finding 2022-04-05 09:22:31 +02:00
deiflaender 941448492b RED-3616: Do not remove annotation that intersects with skipped imported redactions 2022-04-05 08:59:18 +02:00
Christoph Schabert 49d47a0682 Pull request #365: Change Major Version to 3.x
Merge in RED/redaction-service from cschabert/pomxml-1649055501527 to master

* commit '9bab1205b711d94888a6b3364a41a89d07d310b6':
  Change Major Version to 3.x
2022-04-04 09:21:17 +02:00
Christoph Schabert 9bab1205b7 Change Major Version to 3.x 2022-04-04 08:58:35 +02:00
Kresnadi Budisantoso 7963c57552 Pull request #364: RED-3761 add possibility to expand dictionary match with a prefix regex pattern
Merge in RED/redaction-service from kbudisantoso/RED-3761-expandByPrefixRegEx to master

* commit '1427087d8fa29a218b8b378f83c345c497a26b77':
  RED-3761 add possibility to expand dictionary match with a prefix regex pattern
2022-04-01 15:35:45 +02:00
Kresnadi Budisantoso 1427087d8f RED-3761 add possibility to expand dictionary match with a prefix regex pattern 2022-04-01 14:21:47 +02:00
Christoph Schabert b83400ffa3 Pull request #362: automate releases
Merge in RED/redaction-service from autoRelease to master

* commit 'f05f2b21a46b8a4f15bd933570d5a107351aa7b7':
  automate releases
2022-04-01 14:12:09 +02:00
cschabert f05f2b21a4 automate releases 2022-04-01 13:47:26 +02:00
Philipp Schramm 02d9ebc24c Pull request #360: RED-3568: Do not ignore textblocks if only rotated pages are in the document
Merge in RED/redaction-service from RED-3568 to master

* commit 'ae3e4570c15dbc2c46373ce68d55cec760e7da6b':
  RED-3568: Do not ignore textblocks if only rotated pages are in the document
2022-03-29 14:00:20 +02:00
deiflaender ae3e4570c1 RED-3568: Do not ignore textblocks if only rotated pages are in the document 2022-03-29 13:54:23 +02:00
Dominique Eiflaender a975596446 Pull request #359: RED-3699 master
Merge in RED/redaction-service from RED-3699-master to master

* commit 'a5b96f148950e28618028daef1e91aecdadc89e3':
  Fixed unknown type for manual type
  Fixed bug in getColors
  RED-3699:  Do not call updateDictionary on merge RedactionLog
2022-03-25 09:20:52 +01:00
deiflaender a5b96f1489 Fixed unknown type for manual type 2022-03-25 09:12:32 +01:00
deiflaender 4814ce3650 Fixed bug in getColors 2022-03-25 09:12:21 +01:00
deiflaender 7fccdb32c5 RED-3699: Do not call updateDictionary on merge RedactionLog 2022-03-25 09:12:00 +01:00
Timo Bejan 1d389b78fd Pull request #357: processed date fix
Merge in RED/redaction-service from processed-date-fix-3.3.x to master

* commit 'b4916b65b661c80f0924c163b8795205b9c8e6c3':
  processed date fix
2022-03-24 11:52:29 +01:00
Timo Bejan b4916b65b6 processed date fix 2022-03-24 10:16:49 +02:00
Dominique Eiflaender e1db383463 Pull request #356: RED-2836: Fixed calculating dictionary increments with false_positive and false_recommendation
Merge in RED/redaction-service from RED-2836-3 to master

* commit '4d2a7d454d916e7eee65f7cc155323924c2cb229':
  RED-2836: Fixed calculating dictionary increments with false_positive and false_recommendation
2022-03-22 10:31:05 +01:00
deiflaender 4d2a7d454d RED-2836: Fixed calculating dictionary increments with false_positive and false_recommendation 2022-03-22 10:24:26 +01:00
Dominique Eiflaender 3758720683 Pull request #355: Renamed result field in research services to data
Merge in RED/redaction-service from ResearchRename to master

* commit '22bb0b44db7a22f8088512570d4b2be6e742a887':
  Renamed result field in research services to data
2022-03-21 16:02:45 +01:00
deiflaender 22bb0b44db Renamed result field in research services to data 2022-03-21 15:54:37 +01:00
Dominique Eiflaender e93f5d147f Pull request #354: RED-2836: Enabled false positives per dictionary
Merge in RED/redaction-service from RED-2836 to master

* commit '88e6ac3d2291ced8bb2229c3e7daeb8d78d6da93':
  RED-2836: Enabled false positives per dictionary
2022-03-21 12:54:48 +01:00
deiflaender 88e6ac3d22 RED-2836: Enabled false positives per dictionary 2022-03-21 12:47:27 +01:00
Timo Bejan 17b885d901 Pull request #353: pending add to dict
Merge in RED/redaction-service from pending-master-fix to master

* commit '50d9f4fec22768310232988ee01f9e9aa3ba9dc8':
  pending add to dict
2022-03-21 11:49:16 +01:00
Timo Bejan 50d9f4fec2 pending add to dict 2022-03-21 11:19:26 +02:00
Philipp Schramm 1bcf0a3f07 Pull request #351: RED-3553 If image overlaps entity and the entity will be removed
Merge in RED/redaction-service from RED-3553 to master

* commit '1f6a9aa14deb7ec65fee03e28758f8e3157dbd5f':
  RED-3553 If image overlaps entity and the entity will be removed
2022-03-17 14:17:16 +01:00
Philipp Schramm 1f6a9aa14d RED-3553 If image overlaps entity and the entity will be removed 2022-03-17 14:04:59 +01:00
Dominique Eiflaender c8cf0078eb Pull request #352: PortsFrom3.2.x
Merge in RED/redaction-service from portsFrom3.2.x to master

* commit 'b13a695c64280a97ece198a18605c0f1b5cf753f':
  RED-3611: Added priority mode that only listens to priority queue
  RED-3620: Fixed remove from dictionary
2022-03-17 11:16:03 +01:00
deiflaender b13a695c64 RED-3611: Added priority mode that only listens to priority queue 2022-03-17 10:50:48 +01:00
deiflaender 32a907f697 RED-3620: Fixed remove from dictionary 2022-03-17 10:49:01 +01:00
Timo Bejan 1d1de6caba Pull request #350: Removed processed date filter for add to dictionary entries
Merge in RED/redaction-service from RED-3538 to master

* commit '7b2295393c1c2dcbcecbb11c64929517cb13a6de':
  Removed processed date filter for add to dictionary entries
2022-03-16 15:46:13 +01:00
Timo Bejan 7b2295393c Removed processed date filter for add to dictionary entries 2022-03-16 16:29:30 +02:00
Timo Bejan d0ba3f51c1 Pull request #347: From version master
Merge in RED/redaction-service from from-version-master to master

* commit 'c432c56a05ce58d711286bbbcc636ff1445c652d':
  Updated Persistence Service Version
  Release 3.80.x branch creation + incremental entry loading based on version for dictionaries
2022-03-14 16:36:14 +01:00
Timo Bejan c432c56a05 Updated Persistence Service Version 2022-03-14 17:29:04 +02:00
Timo Bejan e73da002d5 Release 3.80.x branch creation + incremental entry loading based on version for dictionaries 2022-03-14 17:27:52 +02:00
114 changed files with 43091 additions and 1419 deletions
+1 -1
View File
@@ -5,7 +5,7 @@
<parent>
<groupId>com.atlassian.bamboo</groupId>
<artifactId>bamboo-specs-parent</artifactId>
<version>8.0.3</version>
<version>8.1.3</version>
<relativePath/>
</parent>
@@ -17,6 +17,7 @@ import com.atlassian.bamboo.specs.api.builders.plan.branches.BranchCleanup;
import com.atlassian.bamboo.specs.api.builders.plan.branches.PlanBranchManagement;
import com.atlassian.bamboo.specs.api.builders.project.Project;
import com.atlassian.bamboo.specs.builders.task.CheckoutItem;
import com.atlassian.bamboo.specs.api.builders.Variable;
import com.atlassian.bamboo.specs.builders.task.InjectVariablesTask;
import com.atlassian.bamboo.specs.builders.task.ScriptTask;
import com.atlassian.bamboo.specs.builders.task.VcsCheckoutTask;
@@ -83,6 +84,7 @@ public class PlanSpec {
project(),
SERVICE_NAME, new BambooKey(SERVICE_KEY))
.description("Plan created from (enter repository url of your plan)")
.variables(new Variable("maven_add_param", ""))
.stages(new Stage("Default Stage")
.jobs(new Job("Default Job",
new BambooKey("JOB1"))
@@ -94,6 +96,7 @@ public class PlanSpec {
"rm -rf ./*"),
new VcsCheckoutTask()
.description("Checkout Default Repository")
.cleanCheckout(true)
.checkoutItems(new CheckoutItem().defaultRepository()),
new ScriptTask()
.description("Build")
@@ -115,7 +118,7 @@ public class PlanSpec {
.defaultRepository())
.dockerConfiguration(
new DockerConfiguration()
.image("nexus.iqser.com:5001/infra/maven:3.6.2-jdk-13-3.0.0")
.image("nexus.iqser.com:5001/infra/maven:3.8.4-openjdk-17-slim")
.volume("/etc/maven/settings.xml", "/usr/share/maven/ref/settings.xml")
.volume("/var/run/docker.sock", "/var/run/docker.sock")
)
@@ -147,6 +150,7 @@ public class PlanSpec {
"rm -rf ./*"),
new VcsCheckoutTask()
.description("Checkout Default Repository")
.cleanCheckout(true)
.checkoutItems(new CheckoutItem().defaultRepository()),
new ScriptTask()
.description("Sonar")
@@ -155,9 +159,9 @@ public class PlanSpec {
.argument(SERVICE_NAME))
.dockerConfiguration(
new DockerConfiguration()
.image("nexus.iqser.com:5001/infra/maven:3.6.2-jdk-13-3.0.0")
.image("nexus.iqser.com:5001/infra/maven:3.8.4-openjdk-17-slim")
.dockerRunArguments("--net=host")
.volume("/etc/maven/settings.xml", "/usr/share/maven/ref/settings.xml")
.volume("/etc/maven/settings.xml", "/usr/share/maven/conf/settings.xml")
.volume("/var/run/docker.sock", "/var/run/docker.sock")
)
)
@@ -165,8 +169,7 @@ public class PlanSpec {
.linkedRepositories("RED / " + SERVICE_NAME)
.triggers(
new ScheduledTrigger()
.scheduleOnceDaily(LocalTime.of(12, 00)),
new BitbucketServerTrigger())
.scheduleOnceDaily(LocalTime.of(23, 00)))
.planBranchManagement(new PlanBranchManagement()
.createForVcsBranchMatching("release.*")
.notificationForCommitters());
@@ -3,49 +3,62 @@ set -e
SERVICE_NAME=$1
if [[ "${bamboo_version_tag}" = "dev" ]]
then
${bamboo_capability_system_builder_mvn3_Maven_3}/bin/mvn \
-f ${bamboo_build_working_directory}/$SERVICE_NAME-v1/pom.xml \
if [[ "$bamboo_planRepository_branchName" == "master" ]]
then
branchVersion=$(cat pom.xml | grep -Eo " <version>.*-SNAPSHOT</version>" | sed -s 's|<version>\(.*\)\..*\(-*.*\)</version>|\1|' | tr -d ' ')
latestVersion=$( semver $(git tag -l "${branchVersion}.*" ) | tail -n1 )
newVersion="$(semver $latestVersion -p -i minor)"
echo "new release on master with version $newVersion"
elif [[ "$bamboo_planRepository_branchName" == release* ]]
then
branchVersion=$(echo $bamboo_planRepository_branchName | sed -s 's|release\/\([0-9]\+\.[0-9]\+\)\.x|\1|')
latestVersion=$( semver $(git tag -l "${branchVersion}.*" ) | tail -n1 )
newVersion="$(semver $latestVersion -p -i patch)"
echo "new release on $bamboo_planRepository_branchName with version $newVersion"
elif [[ "${bamboo_version_tag}" != "dev" ]]
then
newVersion="${bamboo_version_tag}"
echo "new special version bild with $newVersion"
else
mvn -f ${bamboo_build_working_directory}/$SERVICE_NAME-v1/pom.xml \
--no-transfer-progress \
${bamboo_maven_add_param} \
clean install \
-Djava.security.egd=file:/dev/./urandomelse
else
${bamboo_capability_system_builder_mvn3_Maven_3}/bin/mvn \
--no-transfer-progress \
-f ${bamboo_build_working_directory}/$SERVICE_NAME-v1/pom.xml \
versions:set \
-DnewVersion=${bamboo_version_tag}
${bamboo_capability_system_builder_mvn3_Maven_3}/bin/mvn \
--no-transfer-progress \
-f ${bamboo_build_working_directory}/$SERVICE_NAME-image-v1/pom.xml \
versions:set \
-DnewVersion=${bamboo_version_tag}
${bamboo_capability_system_builder_mvn3_Maven_3}/bin/mvn \
-f ${bamboo_build_working_directory}/$SERVICE_NAME-v1/pom.xml \
--no-transfer-progress \
clean deploy \
-e \
-DdeployAtEnd=true \
-Dmaven.wagon.http.ssl.insecure=true \
-Dmaven.wagon.http.ssl.allowall=true \
-Dmaven.wagon.http.ssl.ignore.validity.dates=true \
-DaltDeploymentRepository=iqser_release::default::https://nexus.iqser.com/repository/red-platform-releases
echo "dev build with tag ${bamboo_planRepository_1_branch}_${bamboo_buildNumber}"
echo "gitTag=${bamboo_planRepository_1_branch}_${bamboo_buildNumber}" > git.tag
exit 0
fi
${bamboo_capability_system_builder_mvn3_Maven_3}/bin/mvn \
echo "gitTag=${newVersion}" > git.tag
mvn --no-transfer-progress \
-f ${bamboo_build_working_directory}/$SERVICE_NAME-v1/pom.xml \
${bamboo_maven_add_param} \
versions:set \
-DnewVersion=${newVersion}
mvn --no-transfer-progress \
-f ${bamboo_build_working_directory}/$SERVICE_NAME-image-v1/pom.xml \
${bamboo_maven_add_param} \
versions:set \
-DnewVersion=${newVersion}
mvn -f ${bamboo_build_working_directory}/$SERVICE_NAME-v1/pom.xml \
--no-transfer-progress \
clean deploy \
${bamboo_maven_add_param} \
-e \
-DdeployAtEnd=true \
-Dmaven.wagon.http.ssl.insecure=true \
-Dmaven.wagon.http.ssl.allowall=true \
-Dmaven.wagon.http.ssl.ignore.validity.dates=true \
-DaltDeploymentRepository=iqser_release::default::https://nexus.iqser.com/repository/red-platform-releases
mvn --no-transfer-progress \
-f ${bamboo_build_working_directory}/$SERVICE_NAME-image-v1/pom.xml \
package
${bamboo_capability_system_builder_mvn3_Maven_3}/bin/mvn \
--no-transfer-progress \
mvn --no-transfer-progress \
-f ${bamboo_build_working_directory}/$SERVICE_NAME-image-v1/pom.xml \
docker:push
if [[ "${bamboo_version_tag}" = "dev" ]]
then
echo "gitTag=${bamboo_planRepository_1_branch}_${bamboo_buildNumber}" > git.tag
else
echo "gitTag=${bamboo_version_tag}" > git.tag
fi
@@ -3,46 +3,42 @@ set -e
SERVICE_NAME=$1
${bamboo_capability_system_builder_mvn3_Maven_3}/bin/mvn \
-f ${bamboo_build_working_directory}/$SERVICE_NAME-v1/pom.xml \
echo "build jar binaries"
mvn -f ${bamboo_build_working_directory}/$SERVICE_NAME-v1/pom.xml \
--no-transfer-progress \
clean install \
-Djava.security.egd=file:/dev/./urandomelse
echo "dependency-check:aggregate"
${bamboo_capability_system_builder_mvn3_Maven_3}/bin/mvn \
--no-transfer-progress \
mvn --no-transfer-progress \
-f ${bamboo_build_working_directory}/$SERVICE_NAME-v1/pom.xml \
org.owasp:dependency-check-maven:aggregate
if [[ -z "${bamboo_repository_pr_key}" ]]
then
echo "Sonar Scan for branch: ${bamboo_planRepository_1_branch}"
${bamboo_capability_system_builder_mvn3_Maven_3}/bin/mvn \
--no-transfer-progress \
-f ${bamboo_build_working_directory}/$SERVICE_NAME-v1/pom.xml \
sonar:sonar \
-Dsonar.projectKey=RED_$SERVICE_NAME \
-Dsonar.host.url=https://sonarqube.iqser.com \
-Dsonar.login=${bamboo_sonarqube_api_token_secret} \
-Dsonar.branch.name=${bamboo_planRepository_1_branch} \
-Dsonar.dependencyCheck.jsonReportPath=target/dependency-check-report.json \
-Dsonar.dependencyCheck.xmlReportPath=target/dependency-check-report.xml \
-Dsonar.dependencyCheck.htmlReportPath=target/dependency-check-report.html
mvn --no-transfer-progress \
-f ${bamboo_build_working_directory}/$SERVICE_NAME-v1/pom.xml \
sonar:sonar \
-Dsonar.projectKey=RED_$SERVICE_NAME \
-Dsonar.host.url=https://sonarqube.iqser.com \
-Dsonar.login=${bamboo_sonarqube_api_token_secret} \
-Dsonar.branch.name=${bamboo_planRepository_1_branch} \
-Dsonar.dependencyCheck.jsonReportPath=target/dependency-check-report.json \
-Dsonar.dependencyCheck.xmlReportPath=target/dependency-check-report.xml \
-Dsonar.dependencyCheck.htmlReportPath=target/dependency-check-report.html
else
echo "Sonar Scan for PR with key1: ${bamboo_repository_pr_key}"
${bamboo_capability_system_builder_mvn3_Maven_3}/bin/mvn \
--no-transfer-progress \
-f ${bamboo_build_working_directory}/$SERVICE_NAME-v1/pom.xml \
sonar:sonar \
-Dsonar.projectKey=RED_$SERVICE_NAME \
-Dsonar.host.url=https://sonarqube.iqser.com \
-Dsonar.login=${bamboo_sonarqube_api_token_secret} \
-Dsonar.pullrequest.key=${bamboo_repository_pr_key} \
-Dsonar.pullrequest.branch=${bamboo_repository_pr_sourceBranch} \
-Dsonar.pullrequest.base=${bamboo_repository_pr_targetBranch} \
-Dsonar.dependencyCheck.jsonReportPath=target/dependency-check-report.json \
-Dsonar.dependencyCheck.xmlReportPath=target/dependency-check-report.xml \
-Dsonar.dependencyCheck.htmlReportPath=target/dependency-check-report.html
fi
mvn --no-transfer-progress \
-f ${bamboo_build_working_directory}/$SERVICE_NAME-v1/pom.xml \
sonar:sonar \
-Dsonar.projectKey=RED_$SERVICE_NAME \
-Dsonar.host.url=https://sonarqube.iqser.com \
-Dsonar.login=${bamboo_sonarqube_api_token_secret} \
-Dsonar.pullrequest.key=${bamboo_repository_pr_key} \
-Dsonar.pullrequest.branch=${bamboo_repository_pr_sourceBranch} \
-Dsonar.pullrequest.base=${bamboo_repository_pr_targetBranch} \
-Dsonar.dependencyCheck.jsonReportPath=target/dependency-check-report.json \
-Dsonar.dependencyCheck.xmlReportPath=target/dependency-check-report.xml \
-Dsonar.dependencyCheck.htmlReportPath=target/dependency-check-report.html
fi
+2 -2
View File
@@ -7,7 +7,7 @@
<artifactId>redaction-service</artifactId>
<groupId>com.iqser.red.service</groupId>
<version>1.0-SNAPSHOT</version>
<version>3.0-SNAPSHOT</version>
<packaging>pom</packaging>
@@ -18,4 +18,4 @@
<module>redaction-service-image-v1</module>
</modules>
</project>
</project>
+3 -3
View File
@@ -5,7 +5,7 @@
<parent>
<groupId>com.iqser.red</groupId>
<artifactId>platform-docker-dependency</artifactId>
<version>1.1.0</version>
<version>1.2.0</version>
<relativePath />
</parent>
<modelVersion>4.0.0</modelVersion>
@@ -42,7 +42,7 @@
<artifactId>docker-maven-plugin</artifactId>
</plugin>
</plugins>
<pluginManagement>
<plugins>
<plugin>
@@ -95,4 +95,4 @@
</plugins>
</pluginManagement>
</build>
</project>
</project>
+9 -31
View File
@@ -5,7 +5,7 @@
<parent>
<artifactId>platform-dependency</artifactId>
<groupId>com.iqser.red</groupId>
<version>1.6.0</version>
<version>1.10.0</version>
<relativePath />
</parent>
<modelVersion>4.0.0</modelVersion>
@@ -23,20 +23,24 @@
<properties>
<pdfbox.version>2.0.24</pdfbox.version>
<dsljson.version>1.9.9</dsljson.version>
</properties>
<dependencyManagement>
<dependencies>
<dependency>
<groupId>com.dslplatform</groupId>
<artifactId>dsl-json-java8</artifactId>
<version>${dsljson.version}</version>
</dependency>
<dependency>
<groupId>com.iqser.red</groupId>
<artifactId>platform-commons-dependency</artifactId>
<version>1.11.0</version>
<version>1.13.0</version>
<scope>import</scope>
<type>pom</type>
</dependency>
<dependency>
<groupId>org.apache.pdfbox</groupId>
<artifactId>pdfbox</artifactId>
@@ -47,9 +51,7 @@
<artifactId>pdfbox-tools</artifactId>
<version>${pdfbox.version}</version>
</dependency>
</dependencies>
</dependencyManagement>
<build>
@@ -58,12 +60,10 @@
<plugin>
<groupId>org.sonarsource.scanner.maven</groupId>
<artifactId>sonar-maven-plugin</artifactId>
<version>3.9.0.2155</version>
</plugin>
</plugin>
<plugin>
<groupId>org.owasp</groupId>
<artifactId>dependency-check-maven</artifactId>
<version>6.3.1</version>
<configuration>
<format>ALL</format>
</configuration>
@@ -88,27 +88,5 @@
</plugin>
</plugins>
</pluginManagement>
<plugins>
<plugin>
<groupId>org.jacoco</groupId>
<artifactId>jacoco-maven-plugin</artifactId>
<version>0.8.7</version>
<executions>
<execution>
<id>prepare-agent</id>
<goals>
<goal>prepare-agent</goal>
</goals>
</execution>
<execution>
<id>report</id>
<goals>
<goal>report-aggregate</goal>
</goals>
<phase>verify</phase>
</execution>
</executions>
</plugin>
</plugins>
</build>
</project>
@@ -12,19 +12,50 @@
<artifactId>redaction-service-api-v1</artifactId>
<properties>
<persistence-service.version>1.39.0</persistence-service.version>
<persistence-service.version>1.166.0</persistence-service.version>
</properties>
<dependencies>
<!-- https://mvnrepository.com/artifact/com.dslplatform/dsl-json-java8 -->
<dependency>
<groupId>com.dslplatform</groupId>
<artifactId>dsl-json-java8</artifactId>
<version>${dsljson.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-web</artifactId>
<optional>true</optional>
</dependency>
<dependency>
<groupId>com.iqser.red.service</groupId>
<artifactId>persistence-service-api-v1</artifactId>
<version>${persistence-service.version}</version>
<exclusions>
<exclusion>
<groupId>com.iqser.red.service</groupId>
<artifactId>redaction-service-api-v1</artifactId>
</exclusion>
</exclusions>
</dependency>
</dependencies>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<configuration>
<annotationProcessors>
<annotationProcessor>lombok.launch.AnnotationProcessorHider$AnnotationProcessor</annotationProcessor>
<annotationProcessor>com.dslplatform.json.processor.CompiledJsonAnnotationProcessor</annotationProcessor>
</annotationProcessors>
</configuration>
</plugin>
</plugins>
</build>
</project>
@@ -1,18 +1,17 @@
package com.iqser.red.service.redaction.v1.model;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactions;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
import java.time.OffsetDateTime;
import java.util.ArrayList;
import java.util.HashSet;
import java.util.List;
import java.util.Set;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactions;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@Builder
@NoArgsConstructor
@@ -1,7 +1,6 @@
package com.iqser.red.service.redaction.v1.model;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactions;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
@@ -1,12 +1,12 @@
package com.iqser.red.service.redaction.v1.model;
import java.time.OffsetDateTime;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
import java.time.OffsetDateTime;
@Data
@Builder
@AllArgsConstructor
@@ -1,13 +1,13 @@
package com.iqser.red.service.redaction.v1.model;
import java.util.ArrayList;
import java.util.List;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
import java.util.ArrayList;
import java.util.List;
@Data
@Builder
@NoArgsConstructor
@@ -1,14 +1,14 @@
package com.iqser.red.service.redaction.v1.model;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
@Data
@Builder
@NoArgsConstructor
@@ -20,27 +20,29 @@ public class ManualChange {
private AnnotationStatus annotationStatus;
private ManualRedactionType manualRedactionType;
private OffsetDateTime processedDate;
private OffsetDateTime requestedDate;
private String userId;
private Map<String, Object> propertyChanges = new HashMap<>();
public boolean isProcessed() {
return processedDate != null;
}
private Map<String, String> propertyChanges = new HashMap<>();
public static ManualChange from(BaseAnnotation baseAnnotation) {
ManualChange manualChange = new ManualChange();
manualChange.annotationStatus = baseAnnotation.getStatus();
manualChange.processedDate = baseAnnotation.getProcessedDate();
manualChange.requestedDate = baseAnnotation.getRequestDate();
manualChange.userId = baseAnnotation.getUser();
return manualChange;
}
public boolean isProcessed() {
return processedDate != null;
}
public ManualChange withManualRedactionType(ManualRedactionType manualRedactionType) {
this.manualRedactionType = manualRedactionType;
return this;
}
public ManualChange withChange(String property, Object value) {
public ManualChange withChange(String property, String value) {
this.propertyChanges.put(property, value);
return this;
}
@@ -1,14 +1,18 @@
package com.iqser.red.service.redaction.v1.model;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.legalbasis.LegalBasis;
import com.dslplatform.json.CompiledJson;
import lombok.AllArgsConstructor;
import lombok.Data;
import lombok.NoArgsConstructor;
import java.util.ArrayList;
import java.util.List;
@Data
@CompiledJson
@AllArgsConstructor
@NoArgsConstructor
public class RedactionLog {
@@ -23,8 +27,8 @@ public class RedactionLog {
*/
private int analysisNumber;
private List<RedactionLogEntry> redactionLogEntry;
private List<LegalBasis> legalBasis;
private List<RedactionLogEntry> redactionLogEntry = new ArrayList<>();
private List<RedactionLogLegalBasis> legalBasis = new ArrayList<>();
private long dictionaryVersion = -1;
private long dossierDictionaryVersion = -1;
@@ -0,0 +1,22 @@
package com.iqser.red.service.redaction.v1.model;
import lombok.AllArgsConstructor;
import lombok.Data;
import lombok.NoArgsConstructor;
import java.time.OffsetDateTime;
@Data
@NoArgsConstructor
@AllArgsConstructor
public class RedactionLogComment {
private long id;
private String user;
private String text;
private String annotationId;
private String fileId;
private OffsetDateTime date;
private OffsetDateTime softDeletedTime;
}
@@ -1,7 +1,6 @@
package com.iqser.red.service.redaction.v1.model;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.AnnotationStatus;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.Comment;
import lombok.*;
import java.util.*;
@@ -27,6 +26,7 @@ public class RedactionLogEntry {
private boolean redacted;
private boolean isHint;
private boolean isRecommendation;
private boolean isFalsePositive;
private String section;
private float[] color;
@@ -40,7 +40,7 @@ public class RedactionLogEntry {
private String textAfter;
@Builder.Default
private List<Comment> comments = new ArrayList<>();
private List<RedactionLogComment> comments = new ArrayList<>();
private int startOffset;
private int endOffset;
@@ -53,6 +53,8 @@ public class RedactionLogEntry {
private boolean excluded;
private String sourceId;
@EqualsAndHashCode.Exclude
@Builder.Default
private List<Change> changes = new ArrayList<>();
@@ -65,6 +67,9 @@ public class RedactionLogEntry {
private Set<String> reference = new HashSet<>();
@Builder.Default
private Set<String> importedRedactionIntersections = new HashSet<>();
public boolean lastChangeIsRemoved() {
return last(changes).map(c -> c.getType() == ChangeType.REMOVED).orElse(false);
}
@@ -0,0 +1,16 @@
package com.iqser.red.service.redaction.v1.model;
import lombok.AllArgsConstructor;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@NoArgsConstructor
@AllArgsConstructor
public class RedactionLogLegalBasis {
private String name;
private String description;
private String reason;
}
@@ -1,15 +1,17 @@
package com.iqser.red.service.redaction.v1.model;
import java.util.HashSet;
import java.util.Set;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactions;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.configuration.Colors;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.type.Type;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
import java.util.HashSet;
import java.util.List;
import java.util.Set;
@Data
@Builder
@NoArgsConstructor
@@ -22,4 +24,9 @@ public class RedactionRequest {
private ManualRedactions manualRedactions;
@Builder.Default
private Set<Integer> excludedPages = new HashSet<>();
private Colors colors;
private List<Type> types;
private boolean includeFalsePositives;
}
@@ -3,27 +3,16 @@ package com.iqser.red.service.redaction.v1.model;
import lombok.AllArgsConstructor;
import lombok.Data;
import lombok.NoArgsConstructor;
import lombok.NonNull;
import lombok.RequiredArgsConstructor;
@Data
@RequiredArgsConstructor
@NoArgsConstructor
@AllArgsConstructor
public class SectionArea {
@NonNull
private Point topLeft;
@NonNull
private float width;
@NonNull
private float height;
@NonNull
private int page;
private String header;
public boolean contains(Rectangle other) {
@@ -1,13 +1,14 @@
package com.iqser.red.service.redaction.v1.model;
import com.dslplatform.json.CompiledJson;
import lombok.AllArgsConstructor;
import lombok.Data;
import lombok.NoArgsConstructor;
import lombok.RequiredArgsConstructor;
import java.util.*;
@Data
@CompiledJson
@AllArgsConstructor
@NoArgsConstructor
public class SectionGrid {
@@ -17,13 +18,14 @@ public class SectionGrid {
private List<SectionGridSection> sections = new ArrayList<>();
@Data
@RequiredArgsConstructor
@NoArgsConstructor
@AllArgsConstructor
public static class SectionGridSection {
private final int sectionNumber;
private final String headline;
private final Set<Integer> pages;
private final List<SectionArea> sectionAreas;
private int sectionNumber;
private String headline;
private Set<Integer> pages;
private List<SectionArea> sectionAreas;
}
}
@@ -3,30 +3,18 @@ package com.iqser.red.service.redaction.v1.model;
import lombok.AllArgsConstructor;
import lombok.Data;
import lombok.NoArgsConstructor;
import lombok.NonNull;
import lombok.RequiredArgsConstructor;
import java.util.List;
@Data
@AllArgsConstructor
@NoArgsConstructor
@RequiredArgsConstructor
public class SectionRectangle {
@NonNull
private Point topLeft;
@NonNull
private float width;
@NonNull
private float height;
@NonNull
private int part;
@NonNull
private int numberOfParts;
private List<CellRectangle> tableCells;
@@ -1,20 +1,16 @@
package com.iqser.red.service.redaction.v1.resources;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactions;
import com.iqser.red.service.redaction.v1.model.*;
import com.iqser.red.service.redaction.v1.model.RedactionLog;
import com.iqser.red.service.redaction.v1.model.RedactionRequest;
import com.iqser.red.service.redaction.v1.model.RedactionResult;
import org.springframework.http.MediaType;
import org.springframework.web.bind.annotation.PathVariable;
import org.springframework.web.bind.annotation.PostMapping;
import org.springframework.web.bind.annotation.RequestBody;
import org.springframework.web.bind.annotation.RequestParam;
public interface RedactionResource {
@PostMapping(value = "/annotate", produces = MediaType.APPLICATION_JSON_VALUE, consumes = MediaType.APPLICATION_JSON_VALUE)
AnnotateResponse annotate(@RequestBody AnnotateRequest annotateRequest);
@PostMapping(value = "/debug/classifications", produces = MediaType.APPLICATION_JSON_VALUE, consumes = MediaType.APPLICATION_JSON_VALUE)
RedactionResult classify(@RequestBody RedactionRequest redactionRequest);
@@ -12,11 +12,12 @@
<artifactId>redaction-service-server-v1</artifactId>
<properties>
<drools.version>7.59.0.Final</drools.version>
<kie.version>7.59.0.Final</kie.version>
<locationtech.version>1.16.1</locationtech.version>
<pdfbox.jbig2-imageio.version>3.0.3</pdfbox.jbig2-imageio.version>
<jai-imageio.version>1.4.0</jai-imageio.version>
<drools.version>7.68.0.Final</drools.version>
<kie.version>7.68.0.Final</kie.version>
<locationtech.version>1.18.2</locationtech.version>
<javaassist.version>3.28.0-GA</javaassist.version>
<ahocorasick.version>0.6.3</ahocorasick.version>
<jackson.version>2.13.2</jackson.version>
</properties>
<dependencies>
@@ -24,6 +25,25 @@
<groupId>com.iqser.red.commons</groupId>
<artifactId>storage-commons</artifactId>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.module</groupId>
<artifactId>jackson-module-afterburner</artifactId>
<version>${jackson.version}</version>
</dependency>
<dependency>
<groupId>org.ahocorasick</groupId>
<artifactId>ahocorasick</artifactId>
<version>${ahocorasick.version}</version>
</dependency>
<dependency>
<groupId>org.javassist</groupId>
<artifactId>javassist</artifactId>
<version>${javaassist.version}</version>
</dependency>
<dependency>
<groupId>com.iqser.red.service</groupId>
<artifactId>redaction-service-api-v1</artifactId>
@@ -49,22 +69,6 @@
<artifactId>guava</artifactId>
</dependency>
<dependency>
<groupId>org.apache.pdfbox</groupId>
<artifactId>jbig2-imageio</artifactId>
<version>${pdfbox.jbig2-imageio.version}</version>
</dependency>
<dependency>
<groupId>com.github.jai-imageio</groupId>
<artifactId>jai-imageio-core</artifactId>
<version>${jai-imageio.version}</version>
</dependency>
<dependency>
<groupId>com.github.jai-imageio</groupId>
<artifactId>jai-imageio-jpeg2000</artifactId>
<version>${jai-imageio.version}</version>
</dependency>
<!-- commons -->
<dependency>
<groupId>com.iqser.red.commons</groupId>
@@ -113,6 +117,18 @@
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<configuration>
<annotationProcessors>
<annotationProcessor>lombok.launch.AnnotationProcessorHider$AnnotationProcessor</annotationProcessor>
<annotationProcessor>com.dslplatform.json.processor.CompiledJsonAnnotationProcessor</annotationProcessor>
</annotationProcessors>
</configuration>
</plugin>
<plugin>
<!-- generate git.properties for exposure in /info -->
<groupId>pl.project13.maven</groupId>
@@ -1,5 +1,6 @@
package com.iqser.red.service.redaction.v1.server.classification.model;
import com.dslplatform.json.JsonAttribute;
import com.fasterxml.jackson.annotation.JsonIgnore;
import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
import lombok.AllArgsConstructor;
@@ -14,6 +15,7 @@ public class Footer {
private List<TextBlock> textBlocks;
@JsonIgnore
@JsonAttribute(ignore = true)
public SearchableText getSearchableText() {
SearchableText searchableText = new SearchableText();
@@ -1,5 +1,6 @@
package com.iqser.red.service.redaction.v1.server.classification.model;
import com.dslplatform.json.JsonAttribute;
import com.fasterxml.jackson.annotation.JsonIgnore;
import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
import lombok.AllArgsConstructor;
@@ -14,6 +15,7 @@ public class Header {
private List<TextBlock> textBlocks;
@JsonIgnore
@JsonAttribute(ignore = true)
public SearchableText getSearchableText() {
SearchableText searchableText = new SearchableText();
@@ -1,5 +1,7 @@
package com.iqser.red.service.redaction.v1.server.classification.model;
import com.dslplatform.json.CompiledJson;
import com.dslplatform.json.JsonAttribute;
import com.fasterxml.jackson.annotation.JsonIgnore;
import com.iqser.red.service.redaction.v1.model.SectionArea;
import com.iqser.red.service.redaction.v1.server.redaction.model.CellValue;
@@ -14,6 +16,7 @@ import java.util.*;
@Data
@Builder
@CompiledJson
@NoArgsConstructor
@AllArgsConstructor
public class SectionText {
@@ -38,6 +41,7 @@ public class SectionText {
}
@JsonIgnore
@JsonAttribute(ignore = true)
public SearchableText getSearchableText() {
SearchableText searchableText = new SearchableText();
@@ -1,5 +1,6 @@
package com.iqser.red.service.redaction.v1.server.classification.model;
import com.dslplatform.json.CompiledJson;
import lombok.AllArgsConstructor;
import lombok.Data;
import lombok.NoArgsConstructor;
@@ -8,6 +9,7 @@ import java.util.ArrayList;
import java.util.List;
@Data
@CompiledJson
@NoArgsConstructor
@AllArgsConstructor
public class Text {
@@ -1,5 +1,7 @@
package com.iqser.red.service.redaction.v1.server.classification.model;
import com.dslplatform.json.CompiledJson;
import com.dslplatform.json.JsonAttribute;
import com.fasterxml.jackson.annotation.JsonIgnore;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.utils.TextNormalizationUtilities;
@@ -15,6 +17,7 @@ import java.util.List;
@AllArgsConstructor
@Builder
@Data
@CompiledJson
@NoArgsConstructor
public class TextBlock extends AbstractTextContainer {
@@ -121,6 +124,7 @@ public class TextBlock extends AbstractTextContainer {
@Override
@JsonIgnore
@JsonAttribute(ignore = true)
public String getText() {
StringBuilder sb = new StringBuilder();
@@ -1,5 +1,6 @@
package com.iqser.red.service.redaction.v1.server.classification.model;
import com.dslplatform.json.JsonAttribute;
import com.fasterxml.jackson.annotation.JsonIgnore;
import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
import lombok.AllArgsConstructor;
@@ -14,6 +15,7 @@ public class UnclassifiedText {
private List<TextBlock> textBlocks;
@JsonIgnore
@JsonAttribute(ignore = true)
public SearchableText getSearchableText() {
SearchableText searchableText = new SearchableText();
@@ -52,7 +52,7 @@ public class ClassificationService {
List<Float> headlineFontSizes) {
if (document.getFontSizeCounter().getMostPopular() == null) {
// TODO Figure out why this happens.
textBlock.setClassification("Other");
return;
}
if (PositionUtils.isOverBodyTextFrame(bodyTextFrame, textBlock, page.isRotated()) && (document.getFontSizeCounter()
@@ -1,5 +1,6 @@
package com.iqser.red.service.redaction.v1.server.client.model;
import com.dslplatform.json.CompiledJson;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
@@ -7,6 +8,7 @@ import lombok.NoArgsConstructor;
@Data
@Builder
@CompiledJson
@AllArgsConstructor
@NoArgsConstructor
public class EntityRecogintionEntity {
@@ -4,18 +4,18 @@ import java.util.HashMap;
import java.util.List;
import java.util.Map;
import com.dslplatform.json.CompiledJson;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@Builder
@AllArgsConstructor
@CompiledJson
@NoArgsConstructor
@AllArgsConstructor
public class NerEntities {
@Builder.Default
private Map<Integer, List<EntityRecogintionEntity>> result = new HashMap<>();
private Map<Integer, List<EntityRecogintionEntity>> data = new HashMap<>();
}
@@ -1,42 +1,29 @@
package com.iqser.red.service.redaction.v1.server.controller;
import java.io.ByteArrayOutputStream;
import java.io.IOException;
import java.util.stream.Collectors;
import org.apache.pdfbox.io.MemoryUsageSetting;
import org.apache.pdfbox.pdmodel.PDDocument;
import org.springframework.web.bind.annotation.PathVariable;
import org.springframework.web.bind.annotation.RequestBody;
import org.springframework.web.bind.annotation.RestController;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactions;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.dossier.file.FileType;
import com.iqser.red.service.redaction.v1.model.AnnotateRequest;
import com.iqser.red.service.redaction.v1.model.AnnotateResponse;
import com.iqser.red.service.redaction.v1.model.RedactionLog;
import com.iqser.red.service.redaction.v1.model.RedactionRequest;
import com.iqser.red.service.redaction.v1.model.RedactionResult;
import com.iqser.red.service.redaction.v1.model.SectionArea;
import com.iqser.red.service.redaction.v1.model.SectionGrid;
import com.iqser.red.service.redaction.v1.model.*;
import com.iqser.red.service.redaction.v1.resources.RedactionResource;
import com.iqser.red.service.redaction.v1.server.classification.model.Document;
import com.iqser.red.service.redaction.v1.server.classification.model.Page;
import com.iqser.red.service.redaction.v1.server.exception.NotFoundException;
import com.iqser.red.service.redaction.v1.server.exception.RedactionException;
import com.iqser.red.service.redaction.v1.server.redaction.service.AnnotationService;
import com.iqser.red.service.redaction.v1.server.redaction.service.DictionaryService;
import com.iqser.red.service.redaction.v1.server.redaction.service.DroolsExecutionService;
import com.iqser.red.service.redaction.v1.server.redaction.service.ManualRedactionSurroundingTextService;
import com.iqser.red.service.redaction.v1.server.redaction.service.RedactionLogMergeService;
import com.iqser.red.service.redaction.v1.server.redaction.service.*;
import com.iqser.red.service.redaction.v1.server.segmentation.PdfSegmentationService;
import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
import com.iqser.red.service.redaction.v1.server.visualization.service.PdfVisualisationService;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
import org.apache.pdfbox.pdmodel.PDDocument;
import org.springframework.web.bind.annotation.PathVariable;
import org.springframework.web.bind.annotation.RequestBody;
import org.springframework.web.bind.annotation.RestController;
import java.io.ByteArrayOutputStream;
import java.io.IOException;
import java.util.stream.Collectors;
@Slf4j
@RestController
@@ -45,42 +32,11 @@ public class RedactionController implements RedactionResource {
private final PdfVisualisationService pdfVisualisationService;
private final DroolsExecutionService droolsExecutionService;
private final DictionaryService dictionaryService;
private final AnnotationService annotationService;
private final PdfSegmentationService pdfSegmentationService;
private final RedactionStorageService redactionStorageService;
private final RedactionLogMergeService redactionLogMergeService;
private final ManualRedactionSurroundingTextService manualRedactionSurroundingTextService;
public AnnotateResponse annotate(@RequestBody AnnotateRequest annotateRequest) {
var storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(annotateRequest.getDossierId(), annotateRequest.getFileId(), FileType.ORIGIN));
var mergedRedactionLog = getRedactionLog(RedactionRequest.builder()
.fileId(annotateRequest.getFileId())
.manualRedactions(annotateRequest.getManualRedactions())
.dossierId(annotateRequest.getDossierId())
.dossierTemplateId(annotateRequest.getDossierTemplateId())
.build());
var sectionsGrid = redactionStorageService.getSectionGrid(annotateRequest.getDossierId(), annotateRequest.getFileId());
try (PDDocument pdDocument = PDDocument.load(storedObjectStream, MemoryUsageSetting.setupTempFileOnly())) {
pdDocument.setAllSecurityToBeRemoved(true);
dictionaryService.updateDictionary(annotateRequest.getDossierTemplateId(), annotateRequest.getDossierId());
annotationService.annotate(pdDocument, mergedRedactionLog, sectionsGrid);
try (ByteArrayOutputStream byteArrayOutputStream = new ByteArrayOutputStream()) {
pdDocument.save(byteArrayOutputStream);
return AnnotateResponse.builder().document(byteArrayOutputStream.toByteArray()).build();
}
} catch (Exception e) {
throw new RedactionException(e);
}
}
@Override
public RedactionResult classify(@RequestBody RedactionRequest redactionRequest) {
@@ -169,36 +125,8 @@ public class RedactionController implements RedactionResource {
@Override
public RedactionLog getRedactionLog(RedactionRequest redactionRequest) {
log.info("Requested preview for: {}", redactionRequest);
dictionaryService.updateDictionary(redactionRequest.getDossierTemplateId(), redactionRequest.getDossierId());
var redactionLog = redactionStorageService.getRedactionLog(redactionRequest.getDossierId(), redactionRequest.getFileId());
if (redactionLog == null) {
throw new NotFoundException("RedactionLog not present");
}
log.info("Loaded redaction log with computationalVersion: {}", redactionLog.getAnalysisVersion());
SectionGrid sectionGrid = redactionStorageService.getSectionGrid(redactionRequest.getDossierId(), redactionRequest.getFileId());
if (sectionGrid.getSections().isEmpty()) {
log.info("SectionGrid does not have headlines set. Computing headlines now!");
var text = redactionStorageService.getText(redactionRequest.getDossierId(), redactionRequest.getFileId());
// enhance section grid with headline data
for (var sectionText : text.getSectionTexts()) {
sectionGrid.getSections()
.add(new SectionGrid.SectionGridSection(sectionText.getSectionNumber(), sectionText.getHeadline(), sectionText.getSectionAreas()
.stream()
.map(SectionArea::getPage)
.collect(Collectors.toSet()), sectionText.getSectionAreas()));
}
redactionStorageService.storeObject(redactionRequest.getDossierId(), redactionRequest.getFileId(), FileType.SECTION_GRID, sectionGrid);
}
log.info("Loaded redaction log with computationalVersion: {}", redactionLog.getAnalysisVersion());
return redactionLogMergeService.mergeRedactionLogData(redactionLog, sectionGrid, redactionRequest.getDossierTemplateId(), redactionRequest.getManualRedactions(), redactionRequest.getExcludedPages());
return redactionLogMergeService.provideRedactionLog(redactionRequest);
}
@@ -1,52 +0,0 @@
package com.iqser.red.service.redaction.v1.server.memory;
import lombok.extern.slf4j.Slf4j;
import java.text.CharacterIterator;
import java.text.StringCharacterIterator;
@Slf4j
public class MemoryStats {
public static void printMemoryStats() {
log.info("\n\n ------------------------------ \n" +
" Used Memory: " + humanReadableByteCountBin(getUsedMemory()) + "\n" +
" Free Memory: " + humanReadableByteCountBin(getFreeMemory()) + "\n" +
" Total Memory: " + humanReadableByteCountBin(getTotalMemory()) + "\n" +
" Max Memory: " + humanReadableByteCountBin(getMaxMemory()) + "\n" +
"\n ------------------------------ \n");
}
public static String humanReadableByteCountBin(long bytes) {
long absB = bytes == Long.MIN_VALUE ? Long.MAX_VALUE : Math.abs(bytes);
if (absB < 1024) {
return bytes + " B";
}
long value = absB;
CharacterIterator ci = new StringCharacterIterator("KMGTPE");
for (int i = 40; i >= 0 && absB > 0xfffccccccccccccL >> i; i -= 10) {
value >>= 10;
ci.next();
}
value *= Long.signum(bytes);
return String.format("%.1f %ciB", value / 1024.0, ci.current());
}
private static long getMaxMemory() {
return Runtime.getRuntime().maxMemory();
}
private static long getUsedMemory() {
return getMaxMemory() - getFreeMemory();
}
private static long getTotalMemory() {
return Runtime.getRuntime().totalMemory();
}
private static long getFreeMemory() {
return Runtime.getRuntime().freeMemory();
}
}
@@ -1,52 +1,26 @@
package com.iqser.red.service.redaction.v1.server.parsing;
import java.awt.geom.Point2D;
import java.awt.geom.Rectangle2D;
import java.io.IOException;
import java.util.ArrayList;
import java.util.List;
import org.apache.commons.lang3.reflect.FieldUtils;
import org.apache.pdfbox.contentstream.operator.Operator;
import org.apache.pdfbox.contentstream.operator.OperatorName;
import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingColor;
import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingColorN;
import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingColorSpace;
import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingDeviceCMYKColor;
import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingDeviceGrayColor;
import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingDeviceRGBColor;
import org.apache.pdfbox.contentstream.operator.color.SetStrokingColor;
import org.apache.pdfbox.contentstream.operator.color.SetStrokingColorN;
import org.apache.pdfbox.contentstream.operator.color.SetStrokingColorSpace;
import org.apache.pdfbox.contentstream.operator.color.SetStrokingDeviceCMYKColor;
import org.apache.pdfbox.contentstream.operator.color.SetStrokingDeviceGrayColor;
import org.apache.pdfbox.contentstream.operator.color.SetStrokingDeviceRGBColor;
import org.apache.pdfbox.contentstream.operator.state.SetFlatness;
import org.apache.pdfbox.contentstream.operator.state.SetLineCapStyle;
import org.apache.pdfbox.contentstream.operator.state.SetLineDashPattern;
import org.apache.pdfbox.contentstream.operator.state.SetLineJoinStyle;
import org.apache.pdfbox.contentstream.operator.state.SetLineMiterLimit;
import org.apache.pdfbox.contentstream.operator.state.SetLineWidth;
import org.apache.pdfbox.contentstream.operator.state.SetRenderingIntent;
import org.apache.pdfbox.contentstream.operator.text.SetFontAndSize;
import org.apache.pdfbox.cos.COSBase;
import org.apache.pdfbox.cos.COSName;
import org.apache.pdfbox.cos.COSNumber;
import org.apache.pdfbox.pdmodel.PDDocument;
import org.apache.pdfbox.pdmodel.PDPage;
import org.apache.pdfbox.pdmodel.graphics.PDXObject;
import org.apache.pdfbox.pdmodel.graphics.image.PDImageXObject;
import org.apache.pdfbox.text.TextPosition;
import org.apache.pdfbox.util.Matrix;
import com.iqser.red.service.redaction.v1.server.parsing.model.RedTextPosition;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.model.PdfImage;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Ruling;
import lombok.Getter;
import lombok.Setter;
import lombok.extern.slf4j.Slf4j;
import org.apache.pdfbox.contentstream.operator.Operator;
import org.apache.pdfbox.contentstream.operator.OperatorName;
import org.apache.pdfbox.contentstream.operator.color.*;
import org.apache.pdfbox.contentstream.operator.state.*;
import org.apache.pdfbox.contentstream.operator.text.SetFontAndSize;
import org.apache.pdfbox.cos.COSBase;
import org.apache.pdfbox.cos.COSNumber;
import org.apache.pdfbox.pdmodel.PDDocument;
import org.apache.pdfbox.pdmodel.PDPage;
import org.apache.pdfbox.text.TextPosition;
import java.awt.geom.Point2D;
import java.io.IOException;
import java.util.ArrayList;
import java.util.List;
@Slf4j
public class PDFLinesTextStripper extends PDFTextStripper {
@@ -66,8 +40,6 @@ public class PDFLinesTextStripper extends PDFTextStripper {
private int minCharHeight;
@Getter
private int maxCharHeight;
@Getter
private List<PdfImage> images = new ArrayList<>();
private float path_x;
private float path_y;
@@ -183,9 +155,6 @@ public class PDFLinesTextStripper extends PDFTextStripper {
graphicsPath.clear();
break;
// case OperatorName.DRAW_OBJECT:
// processImageOperation(arguments);
// break;
}
@@ -193,32 +162,6 @@ public class PDFLinesTextStripper extends PDFTextStripper {
}
protected void processImageOperation(List<COSBase> arguments) {
try {
COSName objectName = (COSName) arguments.get(0);
PDXObject xobject = getResources().getXObject(objectName);
if (xobject instanceof PDImageXObject) {
PDImageXObject image = (PDImageXObject) xobject;
Matrix ctmNew = getGraphicsState().getCurrentTransformationMatrix();
Rectangle2D rect = new Rectangle2D.Float(ctmNew.getTranslateX(), ctmNew.getTranslateY(), ctmNew.getScaleX(), ctmNew.getScaleY());
// Memory Hack - sofReference kills me
FieldUtils.writeField(image, "cachedImageSubsampling", -1, true);
if (rect.getHeight() > 2 && rect.getWidth() > 2) {
this.images.add(new PdfImage(image.getImage(), rect, pageNumber, image.getImage()
.getColorModel()
.hasAlpha()));
}
}
} catch (Exception e) {
log.warn("Problem during image extraction: {}", e.getMessage());
}
}
private float floatValue(COSBase value) {
if (value instanceof COSNumber) {
@@ -375,7 +318,6 @@ public class PDFLinesTextStripper extends PDFTextStripper {
minCharHeight = Integer.MAX_VALUE;
maxCharHeight = 0;
textPositionSequences.clear();
images = new ArrayList<>();
rulings.clear();
graphicsPath.clear();
path_x = 0.0f;
@@ -1,5 +1,7 @@
package com.iqser.red.service.redaction.v1.server.parsing.model;
import com.dslplatform.json.CompiledJson;
import com.dslplatform.json.JsonAttribute;
import com.fasterxml.jackson.annotation.JsonIgnore;
import lombok.Data;
import lombok.NoArgsConstructor;
@@ -9,6 +11,7 @@ import org.springframework.beans.BeanUtils;
@Data
@NoArgsConstructor
@CompiledJson
public class RedTextPosition {
private String textMatrix;
@@ -26,14 +29,17 @@ public class RedTextPosition {
// not used in reanalysis
@JsonIgnore
@JsonAttribute(ignore = true)
private float widthOfSpace;
// not used in reanalysis
@JsonIgnore
@JsonAttribute(ignore = true)
private float fontSizeInPt;
// not used in reanalysis
@JsonIgnore
@JsonAttribute(ignore = true)
private String fontName;
@@ -1,22 +1,23 @@
package com.iqser.red.service.redaction.v1.server.parsing.model;
import com.dslplatform.json.CompiledJson;
import com.dslplatform.json.JsonAttribute;
import com.fasterxml.jackson.annotation.JsonIgnore;
import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
import com.iqser.red.service.redaction.v1.model.Point;
import com.iqser.red.service.redaction.v1.model.Rectangle;
import lombok.Data;
import lombok.NoArgsConstructor;
import lombok.extern.slf4j.Slf4j;
import org.apache.pdfbox.text.TextPosition;
import java.util.ArrayList;
import java.util.List;
import java.util.stream.Collectors;
import org.apache.pdfbox.text.TextPosition;
import com.fasterxml.jackson.annotation.JsonIgnore;
import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
import com.iqser.red.service.redaction.v1.model.Point;
import com.iqser.red.service.redaction.v1.model.Rectangle;
import lombok.Data;
import lombok.NoArgsConstructor;
import lombok.extern.slf4j.Slf4j;
@Slf4j
@Data
@CompiledJson
@NoArgsConstructor
@JsonIgnoreProperties({"empty"})
public class TextPositionSequence implements CharSequence {
@@ -27,7 +28,6 @@ public class TextPositionSequence implements CharSequence {
private float x1;
private float x2;
public TextPositionSequence(int page) {
this.page = page;
@@ -112,6 +112,7 @@ public class TextPositionSequence implements CharSequence {
@JsonIgnore
@JsonAttribute(ignore = true)
public float getX1() {
if (textPositions.get(0).getRotation() == 90) {
@@ -123,6 +124,7 @@ public class TextPositionSequence implements CharSequence {
@JsonIgnore
@JsonAttribute(ignore = true)
public float getX2() {
if (textPositions.get(0).getRotation() == 90) {
@@ -135,6 +137,7 @@ public class TextPositionSequence implements CharSequence {
@JsonIgnore
@JsonAttribute(ignore = true)
public float getRotationAdjustedY() {
return textPositions.get(0).getY();
@@ -142,6 +145,7 @@ public class TextPositionSequence implements CharSequence {
@JsonIgnore
@JsonAttribute(ignore = true)
public float getRotationAdjustedX() {
return textPositions.get(0).getXDirAdj();
@@ -149,6 +153,7 @@ public class TextPositionSequence implements CharSequence {
@JsonIgnore
@JsonAttribute(ignore = true)
public float getY1() {
if (textPositions.get(0).getRotation() == 90) {
@@ -160,6 +165,7 @@ public class TextPositionSequence implements CharSequence {
@JsonIgnore
@JsonAttribute(ignore = true)
public float getY2() {
if (textPositions.get(0).getRotation() == 90) {
@@ -171,6 +177,7 @@ public class TextPositionSequence implements CharSequence {
@JsonIgnore
@JsonAttribute(ignore = true)
public float getTextHeight() {
return textPositions.get(0).getHeightDir() + 2;
@@ -178,6 +185,7 @@ public class TextPositionSequence implements CharSequence {
@JsonIgnore
@JsonAttribute(ignore = true)
public float getHeight() {
return getY2() - getY1();
@@ -185,6 +193,7 @@ public class TextPositionSequence implements CharSequence {
@JsonIgnore
@JsonAttribute(ignore = true)
public float getWidth() {
return getX2() - getX1();
@@ -192,6 +201,7 @@ public class TextPositionSequence implements CharSequence {
@JsonIgnore
@JsonAttribute(ignore = true)
public String getFont() {
return textPositions.get(0).getFontName().toLowerCase().replaceAll(",bold", "").replaceAll(",italic", "");
@@ -199,6 +209,7 @@ public class TextPositionSequence implements CharSequence {
@JsonIgnore
@JsonAttribute(ignore = true)
public String getFontStyle() {
String lowercaseFontName = textPositions.get(0).getFontName().toLowerCase();
@@ -217,6 +228,7 @@ public class TextPositionSequence implements CharSequence {
@JsonIgnore
@JsonAttribute(ignore = true)
public float getFontSize() {
return textPositions.get(0).getFontSizeInPt();
@@ -224,6 +236,7 @@ public class TextPositionSequence implements CharSequence {
@JsonIgnore
@JsonAttribute(ignore = true)
public float getSpaceWidth() {
return textPositions.get(0).getWidthOfSpace();
@@ -231,6 +244,7 @@ public class TextPositionSequence implements CharSequence {
@JsonIgnore
@JsonAttribute(ignore = true)
public int getRotation() {
return textPositions.get(0).getRotation();
@@ -238,9 +252,10 @@ public class TextPositionSequence implements CharSequence {
@JsonIgnore
@JsonAttribute(ignore = true)
public Rectangle getRectangle() {
log.debug("Page: '{}', Word: '{}', Rotation: '{}'", page, toString(), textPositions.get(0).getRotation());
log.debug("Page: '{}', Word: '{}', Rotation: '{}', textRotation {}", page, toString(), textPositions.get(0).getRotation(), textPositions.get(0).getDir());
float height = getTextHeight();
@@ -291,6 +306,14 @@ public class TextPositionSequence implements CharSequence {
posXInit = textPositions.get(0).getYDirAdj() + 2;
posXEnd = textPositions.get(textPositions.size() - 1).getYDirAdj() - height;
} else if (textPositions.get(0).getRotation() == 180 && textPositions.get(0).getDir() == 180f) {
posXInit = textPositions.get(0).getPageWidth() - getX1() + 1;
posXEnd = textPositions.get(0).getPageWidth() - getX2() + textPositions.get(0).getWidthDirAdj() - textPositions.get(textPositions.size() - 1)
.getWidthDirAdj() - 3;
posYInit = textPositions.get(0).getYDirAdj() - height + 2;
posYEnd = textPositions.get(textPositions.size() - 1)
.getYDirAdj() - height + 2;
} else {
posXEnd = textPositions.get(textPositions.size() - 1)
.getXDirAdj() + textPositions.get(textPositions.size() - 1).getWidthDirAdj() + 1;
@@ -0,0 +1,25 @@
package com.iqser.red.service.redaction.v1.server.queue;
import static com.iqser.red.service.redaction.v1.server.queue.MessagingConfiguration.REDACTION_QUEUE;
import org.springframework.amqp.rabbit.annotation.RabbitHandler;
import org.springframework.amqp.rabbit.annotation.RabbitListener;
import com.fasterxml.jackson.core.JsonProcessingException;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
@Slf4j
@RequiredArgsConstructor
public class MessageReceiver {
private final RedactionMessageReceiver redactionMessageReceiver;
@RabbitHandler
@RabbitListener(queues = REDACTION_QUEUE)
public void receiveAnalyzeRequest(String in) throws JsonProcessingException {
redactionMessageReceiver.receiveAnalyzeRequest(in, false);
}
}
@@ -1,8 +1,10 @@
package com.iqser.red.service.redaction.v1.server.queue;
import lombok.RequiredArgsConstructor;
import org.springframework.amqp.core.Queue;
import org.springframework.amqp.core.QueueBuilder;
import org.springframework.boot.autoconfigure.condition.ConditionalOnProperty;
import org.springframework.context.annotation.Bean;
import org.springframework.context.annotation.Configuration;
@@ -10,11 +12,24 @@ import org.springframework.context.annotation.Configuration;
@RequiredArgsConstructor
public class MessagingConfiguration {
public static final String REDACTION_QUEUE = "redactionQueue";
public static final String REDACTION_DQL = "redactionDQL";
public static final String REDACTION_PRIORITY_QUEUE = "redactionPriorityQueue";
@Bean
@ConditionalOnProperty(prefix = "redaction-service", name = "priorityMode", havingValue = "false")
public MessageReceiver messageReceiver(RedactionMessageReceiver redactionMessageReceiver){
return new MessageReceiver(redactionMessageReceiver);
}
@Bean
@ConditionalOnProperty(prefix = "redaction-service", name = "priorityMode", havingValue = "true")
public PriorityMessageReceiver priorityMessageReceiver(RedactionMessageReceiver redactionMessageReceiver){
return new PriorityMessageReceiver(redactionMessageReceiver);
}
@Bean
public Queue redactionQueue() {
@@ -27,9 +42,21 @@ public class MessagingConfiguration {
}
@Bean
public Queue redactionPriorityQueue() {
return QueueBuilder.durable(REDACTION_PRIORITY_QUEUE)
.withArgument("x-dead-letter-exchange", "")
.withArgument("x-dead-letter-routing-key", REDACTION_DQL)
.maxPriority(2)
.build();
}
@Bean
public Queue redactionDeadLetterQueue() {
return QueueBuilder.durable(REDACTION_DQL).build();
}
}
@@ -0,0 +1,27 @@
package com.iqser.red.service.redaction.v1.server.queue;
import static com.iqser.red.service.redaction.v1.server.queue.MessagingConfiguration.REDACTION_PRIORITY_QUEUE;
import org.springframework.amqp.rabbit.annotation.RabbitHandler;
import org.springframework.amqp.rabbit.annotation.RabbitListener;
import com.fasterxml.jackson.core.JsonProcessingException;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
@Slf4j
@RequiredArgsConstructor
public class PriorityMessageReceiver {
private final RedactionMessageReceiver redactionMessageReceiver;
@RabbitHandler
@RabbitListener(queues = REDACTION_PRIORITY_QUEUE)
public void receiveAnalyzeRequest(String in) throws JsonProcessingException {
redactionMessageReceiver.receiveAnalyzeRequest(in, true);
}
}
@@ -1,12 +1,5 @@
package com.iqser.red.service.redaction.v1.server.queue;
import static com.iqser.red.service.redaction.v1.server.queue.MessagingConfiguration.REDACTION_DQL;
import static com.iqser.red.service.redaction.v1.server.queue.MessagingConfiguration.REDACTION_QUEUE;
import org.springframework.amqp.rabbit.annotation.RabbitHandler;
import org.springframework.amqp.rabbit.annotation.RabbitListener;
import org.springframework.stereotype.Service;
import com.fasterxml.jackson.core.JsonProcessingException;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.iqser.red.service.redaction.v1.model.AnalyzeRequest;
@@ -15,9 +8,13 @@ import com.iqser.red.service.redaction.v1.model.StructureAnalyzeRequest;
import com.iqser.red.service.redaction.v1.server.client.FileStatusProcessingUpdateClient;
import com.iqser.red.service.redaction.v1.server.redaction.service.AnalyzeService;
import com.iqser.red.service.redaction.v1.server.redaction.service.ManualRedactionSurroundingTextService;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
import org.springframework.amqp.rabbit.annotation.RabbitHandler;
import org.springframework.amqp.rabbit.annotation.RabbitListener;
import org.springframework.stereotype.Service;
import static com.iqser.red.service.redaction.v1.server.queue.MessagingConfiguration.REDACTION_DQL;
@Slf4j
@Service
@@ -30,39 +27,43 @@ public class RedactionMessageReceiver {
private final ManualRedactionSurroundingTextService manualRedactionSurroundingTextService;
@RabbitHandler
@RabbitListener(queues = REDACTION_QUEUE)
public void receiveAnalyzeRequest(String in) throws JsonProcessingException {
public void receiveAnalyzeRequest(String in, boolean priority) throws JsonProcessingException {
var analyzeRequest = objectMapper.readValue(in, AnalyzeRequest.class);
log.info("Processing analyze request for file: {}", analyzeRequest.getFileId());
log.info("Processing priority: {} analyze request for file: {}", priority, analyzeRequest.getFileId());
AnalyzeResult result = null;
switch (analyzeRequest.getMessageType()) {
try {
switch (analyzeRequest.getMessageType()) {
case REANALYSE:
result = analyzeService.reanalyze(analyzeRequest);
log.info("Successfully reanalyzed dossier {} file {} took: {}", analyzeRequest.getDossierId(), analyzeRequest.getFileId(), result.getDuration());
break;
case REANALYSE:
result = analyzeService.reanalyze(analyzeRequest);
log.info("Successfully reanalyzed dossier {} file {} took: {}", analyzeRequest.getDossierId(), analyzeRequest.getFileId(), result.getDuration());
break;
case STRUCTURE_ANALYSE:
result = analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(analyzeRequest.getDossierId(), analyzeRequest.getFileId()));
log.info("Successfully analyzed structure dossier {} file {} took: {}", analyzeRequest.getDossierId(), analyzeRequest.getFileId(), result.getDuration());
break;
case STRUCTURE_ANALYSE:
result = analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(analyzeRequest.getDossierId(), analyzeRequest.getFileId()));
log.info("Successfully analyzed structure dossier {} file {} took: {}", analyzeRequest.getDossierId(), analyzeRequest.getFileId(), result.getDuration());
break;
case ANALYSE:
result = analyzeService.analyze(analyzeRequest);
log.info("Successfully analyzed dossier {} file {} took: {}", analyzeRequest.getDossierId(), analyzeRequest.getFileId(), result.getDuration());
break;
case ANALYSE:
result = analyzeService.analyze(analyzeRequest);
log.info("Successfully analyzed dossier {} file {} took: {}", analyzeRequest.getDossierId(), analyzeRequest.getFileId(), result.getDuration());
break;
case SURROUNDING_TEXT:
result = manualRedactionSurroundingTextService.addSurroundingText(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), analyzeRequest.getManualRedactions());
log.info("Successfully added surrounding text for manual redaction in dossierId {} and fileId {} took: {}", analyzeRequest.getDossierId(), analyzeRequest.getFileId(), result.getDuration());
break;
case SURROUNDING_TEXT:
result = manualRedactionSurroundingTextService.addSurroundingText(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), analyzeRequest.getManualRedactions());
log.info("Successfully added surrounding text for manual redaction in dossierId {} and fileId {} took: {}", analyzeRequest.getDossierId(), analyzeRequest.getFileId(), result.getDuration());
break;
}
result.setMessageType(analyzeRequest.getMessageType());
fileStatusProcessingUpdateClient.analysisSuccessful(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), result);
} catch (Exception e) {
log.warn("Failed to process analyze request: {}", analyzeRequest, e);
fileStatusProcessingUpdateClient.analysisFailed(analyzeRequest.getDossierId(), analyzeRequest.getFileId());
}
result.setMessageType(analyzeRequest.getMessageType());
fileStatusProcessingUpdateClient.analysisSuccessful(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), result);
}
@@ -1,22 +1,16 @@
package com.iqser.red.service.redaction.v1.server.redaction.model;
import static java.util.stream.Collectors.toSet;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.type.DictionaryEntry;
import lombok.Data;
import lombok.Getter;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.Set;
import lombok.Data;
import lombok.Getter;
@Data
public class Dictionary {
public static final String RECOMMENDATION_PREFIX = "recommendation_";
@Getter
private List<DictionaryModel> dictionaryModels;
private Map<String, DictionaryModel> localAccessMap = new HashMap<>();
@@ -26,6 +20,7 @@ public class Dictionary {
public Dictionary(List<DictionaryModel> dictionaryModels, DictionaryVersion version) {
this.dictionaryModels = dictionaryModels;
this.dictionaryModels.forEach(dm -> localAccessMap.put(dm.getType(), dm));
this.version = version;
@@ -33,6 +28,7 @@ public class Dictionary {
public int getDictionaryRank(String type) {
if (!localAccessMap.containsKey(type)) {
return 0;
}
@@ -40,16 +36,6 @@ public class Dictionary {
}
public boolean isRecommendation(String type) {
DictionaryModel model = localAccessMap.get(type);
if (model != null) {
return model.isRecommendation();
}
return false;
}
public boolean hasLocalEntries() {
return dictionaryModels.stream().anyMatch(dm -> !dm.getLocalEntries().isEmpty());
@@ -62,17 +48,9 @@ public class Dictionary {
}
public boolean containsValue(String type, String value) {
public DictionaryModel getType(String type) {
return localAccessMap.containsKey(type) && localAccessMap.get(type)
.getValues(false)
.contains(value) || localAccessMap.containsKey(type) && localAccessMap.get(type)
.getValues(true)
.contains(value) || localAccessMap.containsKey(RECOMMENDATION_PREFIX + type) && localAccessMap.get(RECOMMENDATION_PREFIX + type)
.getValues(false)
.contains(value) || localAccessMap.containsKey(RECOMMENDATION_PREFIX + type) && localAccessMap.get(RECOMMENDATION_PREFIX + type)
.getValues(true)
.contains(value);
return localAccessMap.get(type);
}
@@ -85,6 +63,7 @@ public class Dictionary {
return false;
}
public boolean isCaseInsensitiveDictionary(String type) {
DictionaryModel dictionaryModel = localAccessMap.get(type);
@@ -0,0 +1,26 @@
package com.iqser.red.service.redaction.v1.server.redaction.model;
import java.util.HashSet;
import java.util.Set;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.type.DictionaryEntry;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@Builder
@NoArgsConstructor
@AllArgsConstructor
public class DictionaryEntries {
@Builder.Default
Set<DictionaryEntry> entries = new HashSet<>();
@Builder.Default
Set<DictionaryEntry> falsePositives = new HashSet<>();
@Builder.Default
Set<DictionaryEntry> falseRecommendations = new HashSet<>();
}
@@ -2,10 +2,12 @@ package com.iqser.red.service.redaction.v1.server.redaction.model;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.type.DictionaryEntry;
import com.iqser.red.service.redaction.v1.server.redaction.utils.SearchImplementation;
import lombok.AllArgsConstructor;
import lombok.Data;
import java.io.Serializable;
import java.util.HashSet;
import java.util.Set;
import java.util.stream.Collectors;
@@ -14,19 +16,76 @@ import java.util.stream.Collectors;
@AllArgsConstructor
public class DictionaryModel implements Serializable {
private String type;
private int rank;
private float[] color;
private boolean caseInsensitive;
private boolean hint;
private boolean recommendation;
private Set<DictionaryEntry> entries;
private Set<String> localEntries;
private boolean isDossierDictionary;
private final String type;
private final int rank;
private final float[] color;
private final boolean caseInsensitive;
private final boolean hint;
private final boolean isDossierDictionary;
private final Set<DictionaryEntry> entries;
private final Set<DictionaryEntry> falsePositives;
private final Set<DictionaryEntry> falseRecommendations;
private transient SearchImplementation entriesSearch;
private transient SearchImplementation falsePositiveSearch;
private transient SearchImplementation falseRecommendationsSearch;
private transient SearchImplementation localSearch;
private final Set<String> localEntries = new HashSet<>();
public DictionaryModel(String type,
int rank,
float[] color,
boolean caseInsensitive,
boolean hint,
Set<DictionaryEntry> entries,
Set<DictionaryEntry> falsePositives,
Set<DictionaryEntry> falseRecommendations,
boolean isDossierDictionary) {
this.type = type;
this.rank = rank;
this.color = color;
this.caseInsensitive = caseInsensitive;
this.hint = hint;
this.isDossierDictionary = isDossierDictionary;
this.entries = entries;
this.falsePositives = falsePositives;
this.falseRecommendations = falseRecommendations;
this.entriesSearch = new SearchImplementation(this.entries.stream().filter(e -> !e.isDeleted()).map(DictionaryEntry::getValue).collect(Collectors.toList()), caseInsensitive);
this.falsePositiveSearch = new SearchImplementation(this.falsePositives.stream().filter(e -> !e.isDeleted()).map(DictionaryEntry::getValue).collect(Collectors.toList()), caseInsensitive);
this.falseRecommendationsSearch = new SearchImplementation(this.falseRecommendations.stream().filter(e -> !e.isDeleted()).map(DictionaryEntry::getValue).collect(Collectors.toList()), caseInsensitive);
public Set<String> getValues(boolean local) {
return local ? localEntries : entries.stream().filter(e -> !e.isDeleted()).map(e -> e.getValue()).collect(Collectors
.toSet());
}
public SearchImplementation getLocalSearch() {
if (this.localSearch == null) {
this.localSearch = new SearchImplementation(this.localEntries, caseInsensitive);
}
return this.localSearch;
}
public SearchImplementation getEntriesSearch() {
if (entriesSearch == null) {
this.entriesSearch = new SearchImplementation(this.entries.stream().filter(e -> !e.isDeleted()).map(DictionaryEntry::getValue).collect(Collectors.toList()), caseInsensitive);
}
return entriesSearch;
}
public SearchImplementation getFalsePositiveSearch() {
if (falsePositiveSearch == null) {
this.falsePositiveSearch = new SearchImplementation(this.falsePositives.stream().filter(e -> !e.isDeleted()).map(DictionaryEntry::getValue).collect(Collectors.toList()), caseInsensitive);
}
return falsePositiveSearch;
}
public SearchImplementation getFalseRecommendationsSearch() {
if (falseRecommendationsSearch == null) {
this.falseRecommendationsSearch = new SearchImplementation(this.falseRecommendations.stream().filter(e -> !e.isDeleted()).map(DictionaryEntry::getValue).collect(Collectors.toList()), caseInsensitive);
}
return falseRecommendationsSearch;
}
}
@@ -48,11 +48,13 @@ public class Entity implements ReasonHolder {
private Set<Entity> references = new HashSet<>();
private EntityType entityType;
public Entity(String word, String type, boolean redaction, String redactionReason,
List<EntityPositionSequence> positionSequences, String headline, int matchedRule, int sectionNumber,
String legalBasis, boolean isDictionaryEntry, String textBefore, String textAfter, Integer start,
Integer end, boolean isDossierDictionaryEntry, Set<Engine> engines, Set<Entity> references) {
Integer end, boolean isDossierDictionaryEntry, Set<Engine> engines, Set<Entity> references, EntityType entityType) {
this.word = word;
this.type = type;
@@ -71,11 +73,12 @@ public class Entity implements ReasonHolder {
this.isDossierDictionaryEntry = isDossierDictionaryEntry;
this.engines = engines;
this.references = references;
this.entityType = entityType;
}
public Entity(String word, String type, Integer start, Integer end, String headline, int sectionNumber,
boolean isDictionaryEntry, boolean isDossierDictionaryEntry, Engine engine) {
boolean isDictionaryEntry, boolean isDossierDictionaryEntry, Engine engine, EntityType entityType) {
this.word = word;
this.type = type;
@@ -86,6 +89,7 @@ public class Entity implements ReasonHolder {
this.isDictionaryEntry = isDictionaryEntry;
this.isDossierDictionaryEntry = isDossierDictionaryEntry;
this.engines.add(engine);
this.entityType = entityType;
}
@@ -0,0 +1,5 @@
package com.iqser.red.service.redaction.v1.server.redaction.model;
public enum EntityType {
ENTITY, RECOMMENDATION, FALSE_POSITIVE, FALSE_RECOMMENDATION
}
@@ -1,5 +1,6 @@
package com.iqser.red.service.redaction.v1.server.redaction.model;
import com.dslplatform.json.CompiledJson;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
@@ -7,6 +8,7 @@ import lombok.NoArgsConstructor;
@Data
@Builder
@CompiledJson
@NoArgsConstructor
@AllArgsConstructor
public class Image implements ReasonHolder {
@@ -1,34 +1,20 @@
package com.iqser.red.service.redaction.v1.server.redaction.model;
import com.fasterxml.jackson.annotation.JsonIgnore;
import lombok.Data;
import lombok.NonNull;
import lombok.RequiredArgsConstructor;
import java.awt.geom.Rectangle2D;
import java.awt.image.BufferedImage;
@Data
@RequiredArgsConstructor
public class PdfImage {
@JsonIgnore
private BufferedImage image;
@NonNull
private RedRectangle2D position;
@NonNull
private ImageType imageType;
private boolean isAppendedToParagraph;
private boolean hasTransparency;
@NonNull
private int page;
public PdfImage(BufferedImage image, Rectangle2D position, int page, boolean hasTransparency) {
this.image = image;
this.position = new RedRectangle2D(position.getX(), position.getY(), position.getWidth(), position.getHeight());
this.page = page;
this.hasTransparency = hasTransparency;
}
}
@@ -1,12 +1,15 @@
package com.iqser.red.service.redaction.v1.server.redaction.model;
import com.dslplatform.json.CompiledJson;
import com.dslplatform.json.JsonAttribute;
import com.fasterxml.jackson.annotation.JsonIgnore;
import lombok.AllArgsConstructor;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@CompiledJson
@NoArgsConstructor
@AllArgsConstructor
public class RedRectangle2D {
@@ -19,6 +22,7 @@ public class RedRectangle2D {
private double height;
@JsonIgnore
@JsonAttribute(ignore = true)
public boolean isEmpty() {
return width <= 0.0f || height <= 0.0f;
}
@@ -1,16 +1,22 @@
package com.iqser.red.service.redaction.v1.server.redaction.model;
import com.dslplatform.json.JsonAttribute;
import com.fasterxml.jackson.annotation.JsonIgnore;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.utils.IdBuilder;
import com.iqser.red.service.redaction.v1.server.redaction.utils.SeparatorUtils;
import com.iqser.red.service.redaction.v1.server.redaction.utils.TextNormalizationUtilities;
import java.util.ArrayList;
import java.util.Collections;
import java.util.List;
import java.util.regex.Pattern;
public class SearchableText {
@JsonIgnore
@JsonAttribute(ignore = true)
private transient String stringRepresentation;
private final List<TextPositionSequence> sequences = new ArrayList<>();
@@ -88,8 +94,8 @@ public class SearchableText {
.get(i)
.charAt(j, caseInsensitive) == '-') {
if (counter != 0 || i == 0 && j == 0 || j != 0 && isSeparator(searchSpace.get(i)
.charAt(j - 1, caseInsensitive)) || j == 0 && i != 0 && isSeparator(searchSpace.get(i - 1)
if (counter != 0 || i == 0 && j == 0 || j != 0 && SeparatorUtils.isSeparator(searchSpace.get(i)
.charAt(j - 1, caseInsensitive)) || j == 0 && i != 0 && SeparatorUtils.isSeparator(searchSpace.get(i - 1)
.charAt(searchSpace.get(i - 1)
.length() - 1, caseInsensitive)) || j == 0 && i != 0 && searchSpace.get(i - 1)
.charAt(searchSpace.get(i - 1).length() - 1, caseInsensitive) != ' ' && searchSpace.get(i)
@@ -105,9 +111,9 @@ public class SearchableText {
crossSequenceParts.add(partMatch);
if (i == searchSpace.size() - 1 && j == searchSpace.get(i)
.length() - 1 || j != searchSpace.get(i).length() - 1 && isSeparator(searchSpace.get(i)
.length() - 1 || j != searchSpace.get(i).length() - 1 && SeparatorUtils.isSeparator(searchSpace.get(i)
.charAt(j + 1, caseInsensitive)) || j == searchSpace.get(i)
.length() - 1 && isSeparator(searchSpace.get(i + 1)
.length() - 1 && SeparatorUtils.isSeparator(searchSpace.get(i + 1)
.charAt(0, caseInsensitive)) || j == searchSpace.get(i)
.length() - 1 && searchSpace.get(i)
.charAt(j, caseInsensitive) != ' ' && searchSpace.get(i + 1)
@@ -175,18 +181,18 @@ public class SearchableText {
}
private boolean isSeparator(char c) {
return Character.isWhitespace(c) || Pattern.matches("\\p{Punct}", String.valueOf(c)) || c == '\"' || c == '‘' || c == '’';
}
@Override
public String toString() {
return buildString(sequences);
}
public String asString() {
if (stringRepresentation == null) {
stringRepresentation = buildString(sequences);
}
return stringRepresentation;
}
public String buildString(List<TextPositionSequence> sequences) {
@@ -1,35 +1,27 @@
package com.iqser.red.service.redaction.v1.server.redaction.model;
import static com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary.RECOMMENDATION_PREFIX;
import java.lang.annotation.ElementType;
import java.lang.annotation.Retention;
import java.lang.annotation.RetentionPolicy;
import java.lang.annotation.Target;
import java.util.ArrayList;
import java.util.Collection;
import java.util.Comparator;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.regex.Matcher;
import java.util.regex.Pattern;
import java.util.stream.Collectors;
import org.apache.commons.lang3.StringUtils;
import com.iqser.red.service.redaction.v1.model.ArgumentType;
import com.iqser.red.service.redaction.v1.model.Engine;
import com.iqser.red.service.redaction.v1.model.FileAttribute;
import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
import com.iqser.red.service.redaction.v1.server.redaction.utils.EntitySearchUtils;
import com.iqser.red.service.redaction.v1.server.redaction.utils.FindEntityDetails;
import com.iqser.red.service.redaction.v1.server.redaction.utils.Patterns;
import com.iqser.red.service.redaction.v1.server.redaction.utils.SearchImplementation;
import lombok.Builder;
import lombok.Data;
import lombok.extern.slf4j.Slf4j;
import org.apache.commons.lang3.StringUtils;
import java.lang.annotation.ElementType;
import java.lang.annotation.Retention;
import java.lang.annotation.RetentionPolicy;
import java.lang.annotation.Target;
import java.util.*;
import java.util.regex.Matcher;
import java.util.regex.Pattern;
import java.util.stream.Collectors;
@Data
@Slf4j
@@ -70,11 +62,13 @@ public class Section {
private List<FileAttribute> fileAttributes = new ArrayList<>();
public void addAiEntities(String type, String asType) {
@SuppressWarnings("unused")
@WhenCondition
public void addAiEntities(@Argument(ArgumentType.TYPE) String type, @Argument(ArgumentType.TYPE) String asType) {
Set<Entity> entitiesOfType = nerEntities.stream().filter(nerEntity -> nerEntity.getType().equals(type)).collect(Collectors.toSet());
Set<String> values = entitiesOfType.stream().map(Entity::getWord).collect(Collectors.toSet());
Set<Entity> found = EntitySearchUtils.find(searchText, values, asType, headline, sectionNumber, false, false, Engine.NER, true);
List<String> values = entitiesOfType.stream().map(Entity::getWord).collect(Collectors.toList());
Set<Entity> found = EntitySearchUtils.findEntities(searchText, new SearchImplementation(values, dictionary.isCaseInsensitiveDictionary(asType)), dictionary.getType(asType), new FindEntityDetails(asType, headline, sectionNumber, false, false, Engine.NER, EntityType.RECOMMENDATION));
EntitySearchUtils.clearAndFindPositions(found, searchableText, dictionary);
Set<Entity> finalResult = new HashSet<>();
@@ -99,8 +93,11 @@ public class Section {
nerEntities.removeAll(entitiesOfType);
}
public void combineAiTypes(String startType, String combineTypes, int maxDistanceBetween, String asType, int minPartMatches, boolean allowDuplicateTypes) {
@SuppressWarnings("unused")
@WhenCondition
public void combineAiTypes(@Argument(ArgumentType.TYPE) String startType, @Argument(ArgumentType.TYPE) String combineTypes,
@Argument(ArgumentType.INTEGER) int maxDistanceBetween, @Argument(ArgumentType.TYPE) String asType,
@Argument(ArgumentType.INTEGER) int minPartMatches, @Argument(ArgumentType.BOOLEAN) boolean allowDuplicateTypes) {
Set<String> combineSet = Set.of(combineTypes.split(","));
@@ -119,7 +116,7 @@ public class Section {
} else if (!allowDuplicateTypes && foundParts.contains(entity.getType())) {
if (numberOfMatchParts >= minPartMatches) {
String value = searchText.substring(start, lastEnd);
found.addAll(findEntities(value, asType, false, true, 0, null, null, Engine.NER));
found.addAll(findEntities(value, asType, false, true, 0, null, null, Engine.NER, true));
}
start = -1;
lastEnd = -1;
@@ -134,7 +131,7 @@ public class Section {
} else if (entity.getType().equals(startType) && start != -1) {
if (numberOfMatchParts >= minPartMatches) {
String value = searchText.substring(start, lastEnd);
found.addAll(findEntities(value, asType, false, true, 0, null, null, Engine.NER));
found.addAll(findEntities(value, asType, false, true, 0, null, null, Engine.NER, true));
}
start = entity.getStart();
lastEnd = entity.getEnd();
@@ -151,7 +148,7 @@ public class Section {
if (numberOfMatchParts >= minPartMatches) {
String value = searchText.substring(start, lastEnd);
found.addAll(findEntities(value, asType, false, true, 0, null, null, Engine.NER));
found.addAll(findEntities(value, asType, false, true, 0, null, null, Engine.NER, true));
}
if (!found.isEmpty()) {
@@ -161,35 +158,35 @@ public class Section {
}
}
@SuppressWarnings("unused")
@WhenCondition
public boolean fileAttributeByIdEquals(@Argument(ArgumentType.FILE_ATTRIBUTE) String id, @Argument(ArgumentType.STRING) String value) {
return fileAttributes != null && fileAttributes.stream().anyMatch(attribute -> id.equals(attribute.getId()) && value.equals(attribute.getValue()));
}
@SuppressWarnings("unused")
@WhenCondition
public boolean fileAttributeByPlaceholderEquals(@Argument(ArgumentType.FILE_ATTRIBUTE) String placeholder, @Argument(ArgumentType.STRING) String value) {
return fileAttributes != null && fileAttributes.stream().anyMatch(attribute -> placeholder.equals(attribute.getPlaceholder()) && value.equals(attribute.getValue()));
}
@SuppressWarnings("unused")
@WhenCondition
public boolean fileAttributeByLabelEquals(@Argument(ArgumentType.FILE_ATTRIBUTE) String label, @Argument(ArgumentType.STRING) String value) {
return fileAttributes != null && fileAttributes.stream().anyMatch(attribute -> label.equals(attribute.getLabel()) && value.equals(attribute.getValue()));
}
@SuppressWarnings("unused")
@WhenCondition
public boolean fileAttributeByIdEqualsIgnoreCase(@Argument(ArgumentType.FILE_ATTRIBUTE) String id, @Argument(ArgumentType.STRING) String value) {
return fileAttributes != null && fileAttributes.stream().anyMatch(attribute -> id.equals(attribute.getId()) && value.equalsIgnoreCase(attribute.getValue()));
}
@SuppressWarnings("unused")
@WhenCondition
public boolean fileAttributeByPlaceholderEqualsIgnoreCase(@Argument(ArgumentType.FILE_ATTRIBUTE) String placeholder, @Argument(ArgumentType.STRING) String value) {
@@ -197,14 +194,14 @@ public class Section {
.anyMatch(attribute -> placeholder.equals(attribute.getPlaceholder()) && value.equalsIgnoreCase(attribute.getValue()));
}
@SuppressWarnings("unused")
@WhenCondition
public boolean fileAttributeByLabelEqualsIgnoreCase(@Argument(ArgumentType.FILE_ATTRIBUTE) String label, @Argument(ArgumentType.STRING) String value) {
return fileAttributes != null && fileAttributes.stream().anyMatch(attribute -> label.equals(attribute.getLabel()) && value.equalsIgnoreCase(attribute.getValue()));
}
@SuppressWarnings("unused")
@WhenCondition
public boolean hasTableHeader(@Argument(ArgumentType.STRING) String headerName) {
@@ -212,35 +209,46 @@ public class Section {
return tabularData != null && tabularData.containsKey(cleanHeaderName);
}
@SuppressWarnings("unused")
@WhenCondition
public boolean aiMatchesType(@Argument(ArgumentType.TYPE) String type) {
return nerEntities.stream().anyMatch(entity -> !entity.isIgnored() && entity.getType().equals(type));
}
@SuppressWarnings("unused")
@WhenCondition
public boolean matchesType(@Argument(ArgumentType.TYPE) String type) {
return entities.stream().anyMatch(entity -> !entity.isIgnored() && entity.getType().equals(type));
}
@SuppressWarnings("unused")
@WhenCondition
public boolean matchesImageType(@Argument(ArgumentType.TYPE) String type) {
return images.stream().anyMatch(image -> !image.isIgnored() && image.getType().equals(type));
}
@SuppressWarnings("unused")
@WhenCondition
public boolean headlineContainsWord(@Argument(ArgumentType.STRING) String word) {
return StringUtils.containsIgnoreCase(headline, word);
}
@SuppressWarnings("unused")
@WhenCondition
public boolean containsRegEx(@Argument(ArgumentType.STRING) String regEx, @Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive) {
var compiledPattern = Patterns.getCompiledPattern(regEx, patternCaseInsensitive);
var matcher = compiledPattern.matcher(text);
return matcher.find();
}
@SuppressWarnings("unused")
@WhenCondition
public boolean rowEquals(@Argument(ArgumentType.STRING) String headerName, @Argument(ArgumentType.STRING) String value) {
@@ -249,49 +257,54 @@ public class Section {
return tabularData != null && tabularData.containsKey(cleanHeaderName) && tabularData.get(cleanHeaderName).toString().equals(value);
}
@SuppressWarnings("unused")
@ThenAction
public void expandByRegEx(@Argument(ArgumentType.TYPE) String type, @Argument(ArgumentType.REGEX) String suffixPattern,
@Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive, @Argument(ArgumentType.INTEGER) int group) {
public void expandByPrefixRegEx(@Argument(ArgumentType.TYPE) String type, @Argument(ArgumentType.REGEX) String prefixPattern,
@Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive, @Argument(ArgumentType.INTEGER) int group) {
expandByRegEx(type, suffixPattern, patternCaseInsensitive, group, null);
expandByPrefixRegEx(type, prefixPattern, patternCaseInsensitive, group, null);
}
@ThenAction
public void expandByRegEx(@Argument(ArgumentType.TYPE) String type, @Argument(ArgumentType.REGEX) String suffixPattern,
@Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive, @Argument(ArgumentType.INTEGER) int group,
@Argument(ArgumentType.REGEX) String valuePattern) {
@SuppressWarnings("unused")
public void expandByPrefixRegEx(@Argument(ArgumentType.TYPE) String type, @Argument(ArgumentType.REGEX) String prefixPattern,
@Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive, @Argument(ArgumentType.INTEGER) int group,
@Argument(ArgumentType.REGEX) String valuePattern) {
Pattern compiledValuePattern = null;
if (StringUtils.isEmpty(prefixPattern)) return;
if (valuePattern != null) {
compiledValuePattern = Patterns.getCompiledPattern(valuePattern, patternCaseInsensitive);
}
Pattern compiledPattern = Patterns.getCompiledPattern(suffixPattern, patternCaseInsensitive);
var compiledValuePattern = valuePattern == null ? null : Patterns.getCompiledPattern(valuePattern, patternCaseInsensitive);
var compiledPrefixPattern = Patterns.getCompiledPattern(prefixPattern, patternCaseInsensitive);
Set<Entity> expanded = new HashSet<>();
for (Entity entity : entities) {
for (var entity : entities) {
System.out.println(entity.getWord());
if (!entity.getType().equals(type) || entity.getTextAfter() == null) {
if (!entity.getType().equals(type) || entity.getTextBefore() == null) {
continue;
}
if (valuePattern != null) {
Matcher valueMatcher = compiledValuePattern.matcher(entity.getWord());
var valueMatcher = compiledValuePattern.matcher(entity.getWord());
if (!valueMatcher.matches()) {
continue;
}
}
Matcher matcher = compiledPattern.matcher(entity.getTextAfter());
var matcher = compiledPrefixPattern.matcher(entity.getTextBefore());
while (matcher.find()) {
String match = matcher.group(group);
var match = matcher.group(group);
if (StringUtils.isNotBlank(match)) {
Set<Entity> expandedEntities = findEntities(entity.getWord() + match, type, false, entity.isRedaction(), entity.getMatchedRule(), entity.getRedactionReason(), entity.getLegalBasis(), Engine.RULE);
if (!StringUtils.endsWith(entity.getTextBefore(), match)) {
log.warn("Rules contain invalid group for expandByPrefixRegEx command; prefixPattern:{}, group{}", prefixPattern, group);
continue;
}
var expandedEntities = findEntities(match + entity.getWord(), type, false, entity.isRedaction(), entity.getMatchedRule(), entity.getRedactionReason(), entity.getLegalBasis(), Engine.RULE, false);
expanded.addAll(EntitySearchUtils.findNonOverlappingMatchEntities(entities, expandedEntities));
}
}
@@ -303,6 +316,64 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void expandByRegEx(@Argument(ArgumentType.TYPE) String type, @Argument(ArgumentType.REGEX) String suffixPattern,
@Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive, @Argument(ArgumentType.INTEGER) int group) {
expandByRegEx(type, suffixPattern, patternCaseInsensitive, group, null);
}
@ThenAction
@SuppressWarnings("unused")
public void expandByRegEx(@Argument(ArgumentType.TYPE) String type, @Argument(ArgumentType.REGEX) String suffixPattern,
@Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive, @Argument(ArgumentType.INTEGER) int group,
@Argument(ArgumentType.REGEX) String valuePattern) {
if (StringUtils.isEmpty(suffixPattern)) return;
var compiledValuePattern = valuePattern == null ? null : Patterns.getCompiledPattern(valuePattern, patternCaseInsensitive);
var compiledSuffixPattern = Patterns.getCompiledPattern(suffixPattern, patternCaseInsensitive);
Set<Entity> expanded = new HashSet<>();
for (Entity entity : entities) {
if (!entity.getType().equals(type) || entity.getTextAfter() == null) {
continue;
}
if (valuePattern != null) {
var valueMatcher = compiledValuePattern.matcher(entity.getWord());
if (!valueMatcher.matches()) {
continue;
}
}
var matcher = compiledSuffixPattern.matcher(entity.getTextAfter());
while (matcher.find()) {
var match = matcher.group(group);
if (StringUtils.isNotBlank(match)) {
if (!StringUtils.startsWith(entity.getTextAfter(), match)) {
log.warn("Rules contain invalid group for expandByRegEx command; suffixPattern:{}, group{}", suffixPattern, group);
continue;
}
var expandedEntities = findEntities(entity.getWord() + match, type, false, entity.isRedaction(), entity.getMatchedRule(), entity.getRedactionReason(), entity.getLegalBasis(), Engine.RULE, false);
expanded.addAll(EntitySearchUtils.findNonOverlappingMatchEntities(entities, expandedEntities));
}
}
}
EntitySearchUtils.addEntitiesWithHigherRank(entities, expanded, dictionary);
EntitySearchUtils.removeEntitiesContainedInLarger(entities);
}
@ThenAction
@SuppressWarnings("unused")
public void redactImage(@Argument(ArgumentType.TYPE) String type, @Argument(ArgumentType.RULE_NUMBER) int ruleNumber, @Argument(ArgumentType.STRING) String reason,
@Argument(ArgumentType.LEGAL_BASIS) String legalBasis) {
@@ -311,6 +382,7 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void redactNotImage(@Argument(ArgumentType.TYPE) String type, @Argument(ArgumentType.RULE_NUMBER) int ruleNumber, @Argument(ArgumentType.STRING) String reason) {
redactImage(type, ruleNumber, reason, null, false);
@@ -318,6 +390,7 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void redact(@Argument(ArgumentType.TYPE) String type, @Argument(ArgumentType.RULE_NUMBER) int ruleNumber, @Argument(ArgumentType.STRING) String reason,
@Argument(ArgumentType.LEGAL_BASIS) String legalBasis) {
@@ -326,6 +399,7 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void redactNot(@Argument(ArgumentType.TYPE) String type, @Argument(ArgumentType.RULE_NUMBER) int ruleNumber, @Argument(ArgumentType.STRING) String reason) {
redact(type, ruleNumber, reason, null, false);
@@ -333,6 +407,7 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void redactLineAfter(@Argument(ArgumentType.STRING) String start, @Argument(ArgumentType.TYPE) String asType, @Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
@Argument(ArgumentType.BOOLEAN) boolean redactEverywhere, @Argument(ArgumentType.STRING) String reason,
@Argument(ArgumentType.LEGAL_BASIS) String legalBasis) {
@@ -342,6 +417,7 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void redactNotLineAfter(@Argument(ArgumentType.STRING) String start, @Argument(ArgumentType.TYPE) String asType, @Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
@Argument(ArgumentType.BOOLEAN) boolean redactEverywhere, @Argument(ArgumentType.STRING) String reason) {
@@ -351,6 +427,7 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void redactByRegEx(@Argument(ArgumentType.REGEX) String pattern, @Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive,
@Argument(ArgumentType.INTEGER) int group, @Argument(ArgumentType.TYPE) String asType, @Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
@Argument(ArgumentType.STRING) String reason, @Argument(ArgumentType.LEGAL_BASIS) String legalBasis) {
@@ -360,6 +437,7 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void redactNotByRegEx(@Argument(ArgumentType.REGEX) String pattern, @Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive,
@Argument(ArgumentType.INTEGER) int group, @Argument(ArgumentType.TYPE) String asType, @Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
@Argument(ArgumentType.STRING) String reason) {
@@ -369,6 +447,7 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void redactBetween(@Argument(ArgumentType.STRING) String start, @Argument(ArgumentType.STRING) String stop, @Argument(ArgumentType.TYPE) String asType,
@Argument(ArgumentType.RULE_NUMBER) int ruleNumber, @Argument(ArgumentType.BOOLEAN) boolean redactEverywhere,
@Argument(ArgumentType.STRING) String reason, @Argument(ArgumentType.LEGAL_BASIS) String legalBasis) {
@@ -378,6 +457,7 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void redactNotBetween(@Argument(ArgumentType.STRING) String start, @Argument(ArgumentType.STRING) String stop, @Argument(ArgumentType.TYPE) String asType,
@Argument(ArgumentType.RULE_NUMBER) int ruleNumber, @Argument(ArgumentType.BOOLEAN) boolean redactEverywhere,
@Argument(ArgumentType.STRING) String reason) {
@@ -387,6 +467,7 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void redactLinesBetween(@Argument(ArgumentType.STRING) String start, @Argument(ArgumentType.STRING) String stop, @Argument(ArgumentType.TYPE) String asType,
@Argument(ArgumentType.RULE_NUMBER) int ruleNumber, @Argument(ArgumentType.BOOLEAN) boolean redactEverywhere,
@Argument(ArgumentType.STRING) String reason, @Argument(ArgumentType.LEGAL_BASIS) String legalBasis) {
@@ -396,6 +477,7 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void redactNotLinesBetween(@Argument(ArgumentType.STRING) String start, @Argument(ArgumentType.STRING) String stop, @Argument(ArgumentType.TYPE) String asType,
@Argument(ArgumentType.RULE_NUMBER) int ruleNumber, @Argument(ArgumentType.BOOLEAN) boolean redactEverywhere,
@Argument(ArgumentType.STRING) String reason) {
@@ -405,6 +487,7 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void redactCell(@Argument(ArgumentType.STRING) String cellHeader, @Argument(ArgumentType.RULE_NUMBER) int ruleNumber, @Argument(ArgumentType.TYPE) String type,
@Argument(ArgumentType.BOOLEAN) boolean addAsRecommendations, @Argument(ArgumentType.STRING) String reason,
@Argument(ArgumentType.LEGAL_BASIS) String legalBasis) {
@@ -414,6 +497,7 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void redactNotCell(@Argument(ArgumentType.STRING) String cellHeader, @Argument(ArgumentType.RULE_NUMBER) int ruleNumber, @Argument(ArgumentType.TYPE) String type,
@Argument(ArgumentType.BOOLEAN) boolean addAsRecommendations, @Argument(ArgumentType.STRING) String reason) {
@@ -422,6 +506,7 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void redactAndRecommendByRegEx(@Argument(ArgumentType.REGEX) String pattern, @Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive,
@Argument(ArgumentType.INTEGER) int group, @Argument(ArgumentType.TYPE) String asType, @Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
@Argument(ArgumentType.STRING) String reason, @Argument(ArgumentType.LEGAL_BASIS) String legalBasis) {
@@ -431,6 +516,7 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void redactNotAndRecommendByRegEx(@Argument(ArgumentType.REGEX) String pattern, @Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive,
@Argument(ArgumentType.INTEGER) int group, @Argument(ArgumentType.TYPE) String asType,
@Argument(ArgumentType.RULE_NUMBER) int ruleNumber, @Argument(ArgumentType.STRING) String reason) {
@@ -440,6 +526,7 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void addRecommendationByRegEx(@Argument(ArgumentType.REGEX) String pattern, @Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive,
@Argument(ArgumentType.INTEGER) int group, @Argument(ArgumentType.TYPE) String asType) {
@@ -450,22 +537,22 @@ public class Section {
while (matcher.find()) {
String match = matcher.group(group);
if (StringUtils.isNotBlank(match) && match.length() >= 3) {
localDictionaryAdds.computeIfAbsent(RECOMMENDATION_PREFIX + asType, (x) -> new HashSet<>()).add(match);
localDictionaryAdds.computeIfAbsent(asType, (x) -> new HashSet<>()).add(match);
}
}
}
@ThenAction
@SuppressWarnings("unused")
public void redactNotAndReference(@Argument(ArgumentType.TYPE) String type, @Argument(ArgumentType.REFERENCE_TYPE) String referenceType,
@Argument(ArgumentType.RULE_NUMBER) int ruleNumber, @Argument(ArgumentType.STRING) String reason) {
boolean hasRecommendationDictionary = dictionaryTypes.contains(RECOMMENDATION_PREFIX + type);
Set<Entity> references = entities.stream().filter(entity -> entity.getType().equals(referenceType)).collect(Collectors.toSet());
entities.forEach(entity -> {
if (entity.getType().equals(type) || hasRecommendationDictionary && entity.getType().equals(RECOMMENDATION_PREFIX + type)) {
if (entity.getType().equals(type)) {
entity.setRedaction(false);
entity.setMatchedRule(ruleNumber);
entity.setRedactionReason(reason);
@@ -476,6 +563,7 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void redactIfPrecededBy(@Argument(ArgumentType.STRING) String prefix, @Argument(ArgumentType.TYPE) String type, @Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
@Argument(ArgumentType.STRING) String reason, @Argument(ArgumentType.LEGAL_BASIS) String legalBasis) {
@@ -491,24 +579,33 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void addRedaction(@Argument(ArgumentType.STRING) String value, @Argument(ArgumentType.TYPE) String asType, @Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
@Argument(ArgumentType.STRING) String reason, @Argument(ArgumentType.LEGAL_BASIS) String legalBasis) {
Set<Entity> found = findEntities(value.trim(), asType, true, true, ruleNumber, reason, legalBasis, Engine.RULE);
Set<Entity> found = findEntities(value.trim(), asType, true, true, ruleNumber, reason, legalBasis, Engine.RULE, false);
EntitySearchUtils.addEntitiesIgnoreRank(entities, found);
}
@ThenAction
@SuppressWarnings("unused")
public void ignore(@Argument(ArgumentType.TYPE) String type) {
public void ignore(String type) {
entities.removeIf(entity -> entity.getType().equals(type) && entity.getEntityType().equals(EntityType.ENTITY));
}
entities.removeIf(entity -> entity.getType().equals(type));
@ThenAction
@SuppressWarnings("unused")
public void ignoreRecommendations(@Argument(ArgumentType.TYPE) String type) {
entities.removeIf(entity -> entity.getType().equals(type) && entity.getEntityType().equals(EntityType.RECOMMENDATION));
}
@ThenAction
public void expandToHintAnnotationByRegEx(@Argument(ArgumentType.TYPE) String type, @Argument(ArgumentType.STRING) String pattern,
@Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive, @Argument(ArgumentType.INTEGER) int group,
@Argument(ArgumentType.TYPE) String asType) {
@SuppressWarnings("unused")
public void expandToFalsePositiveByRegEx(@Argument(ArgumentType.TYPE) String type, @Argument(ArgumentType.STRING) String pattern,
@Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive, @Argument(ArgumentType.INTEGER) int group) {
Pattern compiledPattern = Patterns.getCompiledPattern(pattern, patternCaseInsensitive);
@@ -524,17 +621,19 @@ public class Section {
while (matcher.find()) {
String match = matcher.group(group);
if (StringUtils.isNotBlank(match)) {
expanded.addAll(findEntities(entity.getWord() + match, asType, false, false, 0, null, null, Engine.RULE));
expanded.addAll(findEntities(entity.getWord() + match, type, false, false, 0, null, null, Engine.RULE, false));
}
}
}
EntitySearchUtils.addEntitiesWithHigherRank(entities, expanded, dictionary);
EntitySearchUtils.removeEntitiesContainedInLarger(entities);
expanded.forEach(e -> e.setEntityType(EntityType.FALSE_POSITIVE));
}
@ThenAction
@SuppressWarnings("unused")
public void addHintAnnotationByRegEx(@Argument(ArgumentType.REGEX) String pattern, @Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive,
@Argument(ArgumentType.INTEGER) int group, @Argument(ArgumentType.TYPE) String asType) {
@@ -545,7 +644,7 @@ public class Section {
while (matcher.find()) {
String match = matcher.group(group);
if (StringUtils.isNotBlank(match)) {
Set<Entity> found = findEntities(match.trim(), asType, false, false, 0, null, null, Engine.RULE);
Set<Entity> found = findEntities(match.trim(), asType, false, false, 0, null, null, Engine.RULE, false);
EntitySearchUtils.addEntitiesWithHigherRank(entities, found, dictionary);
}
}
@@ -553,14 +652,16 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void addHintAnnotation(@Argument(ArgumentType.STRING) String value, @Argument(ArgumentType.TYPE) String asType) {
Set<Entity> found = findEntities(value.trim(), asType, true, false, 0, null, null, Engine.RULE);
Set<Entity> found = findEntities(value.trim(), asType, true, false, 0, null, null, Engine.RULE, false);
EntitySearchUtils.addEntitiesIgnoreRank(entities, found);
}
@ThenAction
@SuppressWarnings("unused")
public void recommendLineAfter(@Argument(ArgumentType.STRING) String start, @Argument(ArgumentType.TYPE) String asType) {
String[] values = StringUtils.substringsBetween(text, start, "\n");
@@ -577,7 +678,7 @@ public class Section {
}
if (StringUtils.isNotBlank(cleanValue) && cleanValue.length() >= 3) {
localDictionaryAdds.computeIfAbsent(RECOMMENDATION_PREFIX + asType, (x) -> new HashSet<>()).add(cleanValue);
localDictionaryAdds.computeIfAbsent(asType, (x) -> new HashSet<>()).add(cleanValue);
}
}
}
@@ -585,6 +686,7 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void highlightCell(@Argument(ArgumentType.STRING) String cellHeader, @Argument(ArgumentType.RULE_NUMBER) int ruleNumber, @Argument(ArgumentType.TYPE) String type) {
annotateCell(cellHeader, ruleNumber, type, false, false, null, null);
@@ -599,21 +701,19 @@ public class Section {
while (matcher.find()) {
String match = matcher.group(group);
if (StringUtils.isNotBlank(match) && match.length() >= 3) {
Set<Entity> found = findEntities(match.trim(), asType, false, redaction, ruleNumber, reason, legalBasis, Engine.RULE);
Set<Entity> found = findEntities(match.trim(), asType, false, redaction, ruleNumber, reason, legalBasis, Engine.RULE, false);
EntitySearchUtils.addEntitiesWithHigherRank(entities, found, dictionary);
localDictionaryAdds.computeIfAbsent(RECOMMENDATION_PREFIX + asType, (x) -> new HashSet<>()).add(match);
localDictionaryAdds.computeIfAbsent(asType, (x) -> new HashSet<>()).add(match);
}
}
}
private Set<Entity> findEntities(String value, String asType, boolean caseInsensitive, boolean redacted, int ruleNumber, String reason, String legalBasis, Engine engine) {
private Set<Entity> findEntities(String value, String asType, boolean caseInsensitive, boolean redacted, int ruleNumber, String reason, String legalBasis, Engine engine, boolean asRecommendation) {
String text = caseInsensitive ? searchText.toLowerCase() : searchText;
String searchValue = caseInsensitive ? value.toLowerCase() : value;
Set<Entity> found = EntitySearchUtils.find(text, Set.of(searchValue), asType, headline, sectionNumber, false, false, engine, false);
Set<Entity> found = EntitySearchUtils.findEntities(text, new SearchImplementation(value, caseInsensitive), dictionary.getType(asType),
new FindEntityDetails(asType, headline, sectionNumber, false, false, engine, asRecommendation ? EntityType.RECOMMENDATION : EntityType.ENTITY));
found.forEach(entity -> {
if (redacted) {
entity.setRedaction(true);
@@ -629,10 +729,8 @@ public class Section {
private void redact(String type, int ruleNumber, String reason, String legalBasis, boolean redaction) {
boolean hasRecommendationDictionary = dictionaryTypes.contains(RECOMMENDATION_PREFIX + type);
entities.forEach(entity -> {
if (entity.getType().equals(type) || hasRecommendationDictionary && entity.getType().equals(RECOMMENDATION_PREFIX + type)) {
if (entity.getType().equals(type)) {
entity.setRedaction(redaction);
entity.setMatchedRule(ruleNumber);
entity.setRedactionReason(reason);
@@ -665,7 +763,7 @@ public class Section {
} else {
String word = value.toString();
Entity entity = new Entity(word, type, value.getRowSpanStart(), value.getRowSpanStart() + word.length(), headline, sectionNumber, false, false, Engine.RULE);
Entity entity = new Entity(word, type, value.getRowSpanStart(), value.getRowSpanStart() + word.length(), headline, sectionNumber, false, false, Engine.RULE, EntityType.ENTITY);
entity.setRedaction(redact);
entity.setMatchedRule(ruleNumber);
entity.setRedactionReason(reason);
@@ -692,9 +790,9 @@ public class Section {
while (matcher.find()) {
String match = matcher.group().trim();
if (match.length() >= 3) {
localDictionaryAdds.computeIfAbsent(RECOMMENDATION_PREFIX + type, (x) -> new HashSet<>()).add(match);
localDictionaryAdds.computeIfAbsent(type, (x) -> new HashSet<>()).add(match);
String lastname = match.split(" ")[0];
localDictionaryAdds.computeIfAbsent(RECOMMENDATION_PREFIX + type, (x) -> new HashSet<>()).add(lastname);
localDictionaryAdds.computeIfAbsent(type, (x) -> new HashSet<>()).add(lastname);
}
}
}
@@ -709,7 +807,7 @@ public class Section {
if (values != null) {
for (String value : values) {
if (StringUtils.isNotBlank(value)) {
Set<Entity> found = findEntities(value.trim(), asType, false, redaction, ruleNumber, reason, legalBasis, Engine.RULE);
Set<Entity> found = findEntities(value.trim(), asType, false, redaction, ruleNumber, reason, legalBasis, Engine.RULE, false);
EntitySearchUtils.addEntitiesWithHigherRank(entities, found, dictionary);
if (redactEverywhere && !isLocal()) {
@@ -730,7 +828,7 @@ public class Section {
while (matcher.find()) {
String match = matcher.group(group);
if (StringUtils.isNotBlank(match)) {
Set<Entity> found = findEntities(match.trim(), asType, false, redaction, ruleNumber, reason, legalBasis, Engine.RULE);
Set<Entity> found = findEntities(match.trim(), asType, false, redaction, ruleNumber, reason, legalBasis, Engine.RULE, false);
EntitySearchUtils.addEntitiesWithHigherRank(entities, found, dictionary);
}
}
@@ -745,7 +843,7 @@ public class Section {
for (String value : values) {
if (StringUtils.isNotBlank(value)) {
Set<Entity> found = findEntities(value.trim(), asType, false, redaction, ruleNumber, reason, legalBasis, Engine.RULE);
Set<Entity> found = findEntities(value.trim(), asType, false, redaction, ruleNumber, reason, legalBasis, Engine.RULE, false);
EntitySearchUtils.addEntitiesWithHigherRank(entities, found, dictionary);
if (redactEverywhere && !isLocal()) {
@@ -772,7 +870,7 @@ public class Section {
return;
}
Set<Entity> found = findEntities(line.trim(), asType, false, redaction, ruleNumber, reason, legalBasis, Engine.RULE);
Set<Entity> found = findEntities(line.trim(), asType, false, redaction, ruleNumber, reason, legalBasis, Engine.RULE, false);
EntitySearchUtils.addEntitiesWithHigherRank(entities, found, dictionary);
if (redactEverywhere && !isLocal()) {
@@ -3,9 +3,11 @@ package com.iqser.red.service.redaction.v1.server.redaction.model.image;
import java.util.HashMap;
import java.util.Map;
import com.dslplatform.json.CompiledJson;
import lombok.Data;
@Data
@CompiledJson
public class Classification {
private Map<String, Float> probabilities = new HashMap<>();
@@ -1,8 +1,10 @@
package com.iqser.red.service.redaction.v1.server.redaction.model.image;
import com.dslplatform.json.CompiledJson;
import lombok.Data;
@Data
@CompiledJson
public class FilterGeometry {
private ImageSize imageSize;
@@ -1,8 +1,10 @@
package com.iqser.red.service.redaction.v1.server.redaction.model.image;
import com.dslplatform.json.CompiledJson;
import lombok.Data;
@Data
@CompiledJson
public class Filters {
private FilterGeometry geometry;
@@ -1,9 +1,11 @@
package com.iqser.red.service.redaction.v1.server.redaction.model.image;
import com.dslplatform.json.CompiledJson;
import lombok.Data;
@Data
@CompiledJson
public class Geometry {
private float width;
private float height;
}
}
@@ -1,8 +1,10 @@
package com.iqser.red.service.redaction.v1.server.redaction.model.image;
import com.dslplatform.json.CompiledJson;
import lombok.Data;
@Data
@CompiledJson
public class ImageFormat {
private float quotient;
@@ -1,8 +1,10 @@
package com.iqser.red.service.redaction.v1.server.redaction.model.image;
import com.dslplatform.json.CompiledJson;
import lombok.Data;
@Data
@CompiledJson
public class ImageMetadata {
private Classification classification;
@@ -1,15 +1,24 @@
package com.iqser.red.service.redaction.v1.server.redaction.model.image;
import com.dslplatform.json.CompiledJson;
import com.dslplatform.json.JsonAttribute;
import com.fasterxml.jackson.annotation.JsonAlias;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.Data;
import java.util.ArrayList;
import java.util.List;
import lombok.Data;
@Data
@CompiledJson
public class ImageServiceResponse {
private String dossierId;
private String fileId;
private List<ImageMetadata> imageMetadata = new ArrayList<>();
@JsonProperty(value = "imageMetadata")
@JsonAlias("data")
@JsonAttribute(alternativeNames = {"imageMetadata"})
private List<ImageMetadata> data = new ArrayList<>();
}
@@ -1,8 +1,10 @@
package com.iqser.red.service.redaction.v1.server.redaction.model.image;
import com.dslplatform.json.CompiledJson;
import lombok.Data;
@Data
@CompiledJson
public class ImageSize {
private float quotient;
@@ -1,12 +1,14 @@
package com.iqser.red.service.redaction.v1.server.redaction.model.image;
import com.dslplatform.json.CompiledJson;
import lombok.Data;
@Data
@CompiledJson
public class Position {
private float x1;
private float x2;
private float y1;
private float y2;
private int pageNumber;
}
}
@@ -1,8 +1,10 @@
package com.iqser.red.service.redaction.v1.server.redaction.model.image;
import com.dslplatform.json.CompiledJson;
import lombok.Data;
@Data
@CompiledJson
public class Probability {
private boolean unconfident;
@@ -1,33 +1,13 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import static com.iqser.red.service.redaction.v1.server.redaction.service.ImportedRedactionService.IMPORTED_REDACTION_TYPE;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.stream.Collectors;
import java.util.stream.Stream;
import org.kie.api.runtime.KieContainer;
import org.springframework.stereotype.Service;
import org.springframework.web.bind.annotation.RequestBody;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactions;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.IdRemoval;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.ManualForceRedaction;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.ManualImageRecategorization;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.ManualLegalBasisChange;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.dossier.file.FileType;
import com.iqser.red.service.redaction.v1.model.AnalyzeRequest;
import com.iqser.red.service.redaction.v1.model.AnalyzeResult;
import com.iqser.red.service.redaction.v1.model.Rectangle;
import com.iqser.red.service.redaction.v1.model.RedactionLog;
import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
import com.iqser.red.service.redaction.v1.model.SectionArea;
import com.iqser.red.service.redaction.v1.model.SectionGrid;
import com.iqser.red.service.redaction.v1.model.StructureAnalyzeRequest;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.legalbasis.LegalBasis;
import com.iqser.red.service.redaction.v1.model.*;
import com.iqser.red.service.redaction.v1.server.classification.model.Document;
import com.iqser.red.service.redaction.v1.server.classification.model.SectionText;
import com.iqser.red.service.redaction.v1.server.classification.model.Text;
@@ -35,21 +15,25 @@ import com.iqser.red.service.redaction.v1.server.client.LegalBasisClient;
import com.iqser.red.service.redaction.v1.server.client.model.NerEntities;
import com.iqser.red.service.redaction.v1.server.exception.RedactionException;
import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryIncrement;
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryVersion;
import com.iqser.red.service.redaction.v1.server.redaction.model.Image;
import com.iqser.red.service.redaction.v1.server.redaction.model.PageEntities;
import com.iqser.red.service.redaction.v1.server.redaction.model.PdfImage;
import com.iqser.red.service.redaction.v1.server.redaction.model.RedRectangle2D;
import com.iqser.red.service.redaction.v1.server.redaction.model.*;
import com.iqser.red.service.redaction.v1.server.redaction.utils.EntitySearchUtils;
import com.iqser.red.service.redaction.v1.server.redaction.utils.SearchImplementation;
import com.iqser.red.service.redaction.v1.server.segmentation.ImageService;
import com.iqser.red.service.redaction.v1.server.segmentation.PdfSegmentationService;
import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
import lombok.RequiredArgsConstructor;
import lombok.SneakyThrows;
import lombok.extern.slf4j.Slf4j;
import org.kie.api.runtime.KieContainer;
import org.springframework.stereotype.Service;
import org.springframework.web.bind.annotation.RequestBody;
import java.util.*;
import java.util.stream.Collectors;
import java.util.stream.Stream;
import static com.iqser.red.service.redaction.v1.server.redaction.service.ImportedRedactionService.IMPORTED_REDACTION_TYPE;
@Slf4j
@Service
@@ -92,6 +76,7 @@ public class AnalyzeService {
}
List<SectionText> sectionTexts = sectionTextBuilderService.buildSectionText(classifiedDoc);
sectionGridCreatorService.createSectionGrid(classifiedDoc, pageCount);
Text text = new Text(pageCount, sectionTexts);
@@ -131,10 +116,14 @@ public class AnalyzeService {
return analyze(analyzeRequest);
}
// var dis = System.currentTimeMillis();
DictionaryIncrement dictionaryIncrement = dictionaryService.getDictionaryIncrements(analyzeRequest.getDossierTemplateId(), new DictionaryVersion(redactionLog.getDictionaryVersion(), redactionLog.getDossierDictionaryVersion()), analyzeRequest.getDossierId());
// log.info("Dictionary Increment time time: {} ms", (System.currentTimeMillis() - dis));
// var fis = System.currentTimeMillis();
Set<Integer> sectionsToReanalyse = !analyzeRequest.getSectionsToReanalyse()
.isEmpty() ? analyzeRequest.getSectionsToReanalyse() : findSectionsToReanalyse(dictionaryIncrement, redactionLog, text, analyzeRequest);
// log.info("Find sections time: {} ms", (System.currentTimeMillis() - fis));
if (sectionsToReanalyse.isEmpty()) {
return finalizeAnalysis(analyzeRequest, startTime, redactionLog, text, dictionaryIncrement.getDictionaryVersion(), true);
@@ -144,7 +133,7 @@ public class AnalyzeService {
if (redactionServiceSettings.isNerServiceEnabled()) {
nerEntities = redactionStorageService.getNerEntities(analyzeRequest.getDossierId(), analyzeRequest.getFileId());
} else {
nerEntities = NerEntities.builder().build();
nerEntities = new NerEntities();
}
List<SectionText> reanalysisSections = text.getSectionTexts()
@@ -152,20 +141,31 @@ public class AnalyzeService {
.filter(sectionText -> sectionsToReanalyse.contains(sectionText.getSectionNumber()))
.collect(Collectors.toList());
// long kis = System.currentTimeMillis();
KieContainer kieContainer = droolsExecutionService.updateRules(analyzeRequest.getDossierTemplateId());
// log.info("Kie time: {} ms", (System.currentTimeMillis() - kis));
// long dds = System.currentTimeMillis();
Dictionary dictionary = dictionaryService.getDeepCopyDictionary(analyzeRequest.getDossierTemplateId(), analyzeRequest.getDossierId());
// log.info("Dict Time time: {} ms", (System.currentTimeMillis() - dds));
// long pis = System.currentTimeMillis();
PageEntities pageEntities = entityRedactionService.findEntities(dictionary, reanalysisSections, kieContainer, analyzeRequest, nerEntities);
// log.info("Find Entities time: {}", (System.currentTimeMillis() - pis));
// long crs = System.currentTimeMillis();
var newRedactionLogEntries = redactionLogCreatorService.createRedactionLog(pageEntities, text.getNumberOfPages(), analyzeRequest.getDossierTemplateId());
// log.info("Create Redaction-log time: {} ms", (System.currentTimeMillis() - crs));
// long prs = System.currentTimeMillis();
var importedRedactionFilteredEntries = importedRedactionService.processImportedRedactions(analyzeRequest.getDossierTemplateId(), analyzeRequest.getDossierId(), analyzeRequest.getFileId(), newRedactionLogEntries, false);
// log.info("Process imports time: {} ms", (System.currentTimeMillis() - prs));
redactionLog.getRedactionLogEntry()
.removeIf(entry -> sectionsToReanalyse.contains(entry.getSectionNumber()) && !entry.getType()
.equals(IMPORTED_REDACTION_TYPE));
redactionLog.getRedactionLogEntry().addAll(importedRedactionFilteredEntries);
// var fls = System.currentTimeMillis();
// log.info("Finalize time: {} ms", (System.currentTimeMillis() - fls));
return finalizeAnalysis(analyzeRequest, startTime, redactionLog, text, dictionaryIncrement.getDictionaryVersion(), true);
}
@@ -179,7 +179,7 @@ public class AnalyzeService {
if (redactionServiceSettings.isNerServiceEnabled()) {
nerEntities = redactionStorageService.getNerEntities(analyzeRequest.getDossierId(), analyzeRequest.getFileId());
} else {
nerEntities = NerEntities.builder().build();
nerEntities = new NerEntities();
}
dictionaryService.updateDictionary(analyzeRequest.getDossierTemplateId(), analyzeRequest.getDossierId());
KieContainer kieContainer = droolsExecutionService.updateRules(analyzeRequest.getDossierTemplateId());
@@ -191,7 +191,7 @@ public class AnalyzeService {
List<RedactionLogEntry> redactionLogEntries = redactionLogCreatorService.createRedactionLog(pageEntities, text.getNumberOfPages(), analyzeRequest.getDossierTemplateId());
var legalBasis = legalBasisClient.getLegalBasisMapping(analyzeRequest.getDossierTemplateId());
var redactionLog = new RedactionLog(redactionServiceSettings.getAnalysisVersion(), analyzeRequest.getAnalysisNumber(), redactionLogEntries, legalBasis, dictionary.getVersion()
var redactionLog = new RedactionLog(redactionServiceSettings.getAnalysisVersion(), analyzeRequest.getAnalysisNumber(), redactionLogEntries, convert(legalBasis), dictionary.getVersion()
.getDossierTemplateVersion(), dictionary.getVersion()
.getDossierVersion(), rulesVersion, legalBasisClient.getVersion(analyzeRequest.getDossierTemplateId()));
@@ -219,13 +219,19 @@ public class AnalyzeService {
}
}
// long ss = System.currentTimeMillis();
var dictionaryIncrementsSearch = new SearchImplementation(dictionaryIncrement.getValues().stream()
.map(DictionaryIncrementValue::getValue).collect(Collectors.toList()), true);
for (SectionText sectionText : text.getSectionTexts()) {
if (EntitySearchUtils.sectionContainsAny(sectionText.getText(), dictionaryIncrement.getValues())) {
if (EntitySearchUtils.sectionContainsAny(sectionText.getText(), dictionaryIncrementsSearch)) {
sectionsToReanalyse.add(sectionText.getSectionNumber());
}
}
// log.info("Section Find time: {}", (System.currentTimeMillis() - ss));
log.info("Should reanalyze {} sections for request: {}, took: {}", sectionsToReanalyse.size(), analyzeRequest, System.currentTimeMillis() - start);
@@ -282,6 +288,9 @@ public class AnalyzeService {
.map(ManualForceRedaction::getAnnotationId)))).collect(Collectors.toSet());
}
public List<RedactionLogLegalBasis> convert(List<LegalBasis> legalBasis) {
return legalBasis.stream().map(l -> new RedactionLogLegalBasis(l.getName(), l.getDescription(), l.getReason())).collect(Collectors.toList());
}
public Image convert(RedactionLogEntry entry) {
@@ -5,7 +5,6 @@ import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.ty
import com.iqser.red.service.redaction.v1.server.client.DictionaryClient;
import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
import com.iqser.red.service.redaction.v1.server.redaction.model.*;
import com.iqser.red.service.redaction.v1.server.redaction.utils.IdBuilder;
import feign.FeignException;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
@@ -36,13 +35,13 @@ public class DictionaryService {
long dossierTemplateDictionaryVersion = dictionaryClient.getVersion(dossierTemplateId);
var dossierTemplateDictionary = dictionariesByDossierTemplate.get(dossierTemplateId);
if (dossierTemplateDictionary == null || dossierTemplateDictionaryVersion > dossierTemplateDictionary.getDictionaryVersion()) {
updateDictionaryEntry(dossierTemplateId, dossierTemplateDictionaryVersion, null);
updateDictionaryEntry(dossierTemplateId, dossierTemplateDictionaryVersion, getVersion(dossierTemplateDictionary), null);
}
long dossierDictionaryVersion = dictionaryClient.getVersionForDossier(dossierId);
var dossierDictionary = dictionariesByDossier.get(dossierId);
if (dossierDictionary == null || dossierDictionaryVersion > dossierDictionary.getDictionaryVersion()) {
updateDictionaryEntry(dossierTemplateId, dossierDictionaryVersion, dossierId);
updateDictionaryEntry(dossierTemplateId, dossierDictionaryVersion, getVersion(dossierDictionary), dossierId);
}
return DictionaryVersion.builder().dossierTemplateVersion(dossierTemplateDictionaryVersion).dossierVersion(dossierDictionaryVersion).build();
@@ -61,6 +60,16 @@ public class DictionaryService {
newValues.add(new DictionaryIncrementValue(dictionaryEntry.getValue(), dictionaryModel.isCaseInsensitive()));
}
});
dictionaryModel.getFalsePositives().forEach(dictionaryEntry -> {
if (dictionaryEntry.getVersion() > fromVersion.getDossierTemplateVersion()) {
newValues.add(new DictionaryIncrementValue(dictionaryEntry.getValue(), dictionaryModel.isCaseInsensitive()));
}
});
dictionaryModel.getFalseRecommendations().forEach(dictionaryEntry -> {
if (dictionaryEntry.getVersion() > fromVersion.getDossierTemplateVersion()) {
newValues.add(new DictionaryIncrementValue(dictionaryEntry.getValue(), dictionaryModel.isCaseInsensitive()));
}
});
});
if (dictionariesByDossier.containsKey(dossierId)) {
@@ -71,6 +80,16 @@ public class DictionaryService {
newValues.add(new DictionaryIncrementValue(dictionaryEntry.getValue(), dictionaryModel.isCaseInsensitive()));
}
});
dictionaryModel.getFalsePositives().forEach(dictionaryEntry -> {
if (dictionaryEntry.getVersion() > fromVersion.getDossierVersion()) {
newValues.add(new DictionaryIncrementValue(dictionaryEntry.getValue(), dictionaryModel.isCaseInsensitive()));
}
});
dictionaryModel.getFalseRecommendations().forEach(dictionaryEntry -> {
if (dictionaryEntry.getVersion() > fromVersion.getDossierVersion()) {
newValues.add(new DictionaryIncrementValue(dictionaryEntry.getValue(), dictionaryModel.isCaseInsensitive()));
}
});
});
}
@@ -78,18 +97,61 @@ public class DictionaryService {
}
private void updateDictionaryEntry(String dossierTemplateId, long version, String dossierId) {
private void updateDictionaryEntry(String dossierTemplateId, long version, Long currentVersion, String dossierId) {
try {
DictionaryRepresentation dictionaryRepresentation = new DictionaryRepresentation();
var typeResponse = dossierId == null ? dictionaryClient.getAllTypesForDossierTemplate(dossierTemplateId) : dictionaryClient.getAllTypesForDossier(dossierId);
var typeResponse = dossierId == null ? dictionaryClient.getAllTypesForDossierTemplate(dossierTemplateId, false)
: dictionaryClient.getAllTypesForDossier(dossierId, false);
if (CollectionUtils.isNotEmpty(typeResponse)) {
List<DictionaryModel> dictionary = typeResponse
.stream()
.map(t -> new DictionaryModel(t.getType(), t.getRank(), convertColor(t.getHexColor()), t.isCaseInsensitive(), t
.isHint(), t.isRecommendation(), convertEntries(t.getId()), new HashSet<>(), dossierId != null))
.map(t -> {
Optional<DictionaryModel> oldModel;
if (dossierId == null) {
var representation = dictionariesByDossierTemplate.get(dossierTemplateId);
oldModel = representation != null ? representation.getDictionary().stream().filter(f -> f.getType().equals(t.getType())).findAny() : Optional.empty();
} else {
var representation = dictionariesByDossier.get(dossierId);
oldModel = representation != null ? representation.getDictionary().stream().filter(f -> f.getType().equals(t.getType())).findAny() : Optional.empty();
}
Set<DictionaryEntry> entries = new HashSet<>();
Set<DictionaryEntry> falsePositives = new HashSet<>();
Set<DictionaryEntry> falseRecommendations = new HashSet<>();
DictionaryEntries newEntries = getEntries(t.getId(), currentVersion);
var newValues = newEntries.getEntries().stream().map(DictionaryEntry::getValue).collect(Collectors.toSet());
var newFalsePositivesValues = newEntries.getFalsePositives().stream().map(DictionaryEntry::getValue).collect(Collectors.toSet());
var newFalseRecommendationsValues = newEntries.getFalseRecommendations().stream().map(DictionaryEntry::getValue).collect(Collectors.toSet());
oldModel.ifPresent(oldDictionaryModel -> {
});
// add old entries from existing DictionaryModel
oldModel.ifPresent(dictionaryModel -> entries.addAll(dictionaryModel.getEntries().stream().filter(
f -> !newValues.contains(f.getValue())).collect(Collectors.toList())
));
oldModel.ifPresent(dictionaryModel -> falsePositives.addAll(dictionaryModel.getFalsePositives().stream().filter(
f -> !newFalsePositivesValues.contains(f.getValue())).collect(Collectors.toList())
));
oldModel.ifPresent(dictionaryModel -> falseRecommendations.addAll(dictionaryModel.getFalseRecommendations().stream().filter(
f -> !newFalseRecommendationsValues.contains(f.getValue())).collect(Collectors.toList())
));
// Add Increments
entries.addAll(newEntries.getEntries());
falsePositives.addAll(newEntries.getFalsePositives());
falseRecommendations.addAll(newEntries.getFalseRecommendations());
return new DictionaryModel(t.getType(), t.getRank(), convertColor(t.getHexColor()), t.isCaseInsensitive(), t
.isHint(), entries, falsePositives, falseRecommendations, dossierId != null);
})
.sorted(Comparator.comparingInt(DictionaryModel::getRank).reversed())
.collect(Collectors.toList());
@@ -118,20 +180,24 @@ public class DictionaryService {
}
private Set<DictionaryEntry> convertEntries(String typeId) {
private DictionaryEntries getEntries(String typeId, Long fromVersion) {
var type = dictionaryClient.getDictionaryForType(typeId);
var type = dictionaryClient.getDictionaryForType(typeId, fromVersion);
Set<DictionaryEntry> entries = new HashSet<>(type
.getEntries());
Set<DictionaryEntry> entries = type.getEntries() != null ? new HashSet<>(type.getEntries()) : new HashSet<>();
Set<DictionaryEntry> falsePositives = type.getFalsePositiveEntries() != null ? new HashSet<>(type.getFalsePositiveEntries()) : new HashSet<>();
Set<DictionaryEntry> falseRecommendations = type.getFalseRecommendationEntries() != null ? new HashSet<>(type.getFalseRecommendationEntries()) : new HashSet<>();
if (type.isCaseInsensitive()) {
entries.forEach(entry -> entry.setValue(entry.getValue().toLowerCase(Locale.ROOT)));
falsePositives.forEach(entry -> entry.setValue(entry.getValue().toLowerCase(Locale.ROOT)));
falseRecommendations.forEach(entry -> entry.setValue(entry.getValue().toLowerCase(Locale.ROOT)));
}
return entries;
return new DictionaryEntries(entries, falsePositives, falseRecommendations);
}
private float[] convertColor(String hex) {
Color color = Color.decode(hex);
@@ -139,16 +205,6 @@ public class DictionaryService {
}
public boolean isCaseInsensitiveDictionary(String type, String dossierTemplateId) {
DictionaryModel dictionaryModel = dictionariesByDossierTemplate.get(dossierTemplateId).getLocalAccessMap().get(type);
if (dictionaryModel != null) {
return dictionaryModel.isCaseInsensitive();
}
return false;
}
public float[] getColor(String type, String dossierTemplateId) {
DictionaryModel model = dictionariesByDossierTemplate.get(dossierTemplateId).getLocalAccessMap().get(type);
@@ -169,16 +225,6 @@ public class DictionaryService {
}
public boolean isRecommendation(String type, String dossierTemplateId) {
DictionaryModel model = dictionariesByDossierTemplate.get(dossierTemplateId).getLocalAccessMap().get(type);
if (model != null) {
return model.isRecommendation();
}
return false;
}
public Dictionary getDeepCopyDictionary(String dossierTemplateId, String dossierId) {
List<DictionaryModel> copy = new ArrayList<>();
@@ -202,21 +248,17 @@ public class DictionaryService {
}
public float[] getRequestRemoveColor(String dossierTemplateId) {
return dictionariesByDossierTemplate.get(dossierTemplateId).getRequestRemoveColor();
}
public float[] getNotRedactedColor(String dossierTemplateId) {
return dictionariesByDossierTemplate.get(dossierTemplateId).getNotRedactedColor();
}
public float[] getRequestAddColor(String dossierTemplateId) {
return dictionariesByDossierTemplate.get(dossierTemplateId).getRequestAddColor();
private Long getVersion(DictionaryRepresentation dictionaryRepresentation) {
if (dictionaryRepresentation == null) {
return null;
} else {
return dictionaryRepresentation.getDictionaryVersion();
}
}
}
@@ -1,18 +1,5 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.stream.Collectors;
import java.util.stream.Stream;
import org.apache.commons.lang3.StringUtils;
import org.kie.api.runtime.KieContainer;
import org.springframework.stereotype.Service;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.AnnotationStatus;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.IdRemoval;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.ManualImageRecategorization;
@@ -21,21 +8,20 @@ import com.iqser.red.service.redaction.v1.model.Engine;
import com.iqser.red.service.redaction.v1.server.classification.model.SectionText;
import com.iqser.red.service.redaction.v1.server.client.model.NerEntities;
import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryModel;
import com.iqser.red.service.redaction.v1.server.redaction.model.Entities;
import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
import com.iqser.red.service.redaction.v1.server.redaction.model.EntityPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.model.Image;
import com.iqser.red.service.redaction.v1.server.redaction.model.PageEntities;
import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
import com.iqser.red.service.redaction.v1.server.redaction.model.Section;
import com.iqser.red.service.redaction.v1.server.redaction.model.SectionSearchableTextPair;
import com.iqser.red.service.redaction.v1.server.redaction.model.*;
import com.iqser.red.service.redaction.v1.server.redaction.utils.EntitySearchUtils;
import com.iqser.red.service.redaction.v1.server.redaction.utils.FindEntityDetails;
import com.iqser.red.service.redaction.v1.server.redaction.utils.IdBuilder;
import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
import org.apache.commons.lang3.StringUtils;
import org.kie.api.runtime.KieContainer;
import org.springframework.stereotype.Service;
import java.util.*;
import java.util.stream.Collectors;
import java.util.stream.Stream;
@Slf4j
@Service
@@ -61,6 +47,8 @@ public class EntityRedactionService {
}
Map<Integer, List<Entity>> entitiesPerPage = convertToEntitiesPerPage(entities);
EntitySearchUtils.removeEntitiesContainedInRedactedLogos(imagesPerPage, entitiesPerPage);
return new PageEntities(entitiesPerPage, imagesPerPage);
}
@@ -83,6 +71,7 @@ public class EntityRedactionService {
surroundingWordsService.addSurroundingText(entities.getEntities(), reanalysisSection.getSearchableText(), dictionary);
}
if (!local && analyzeRequest.getManualRedactions() != null) {
var approvedForceRedactions = analyzeRequest.getManualRedactions().getForceRedactions().stream()
@@ -121,6 +110,7 @@ public class EntityRedactionService {
}));
}
sectionSearchableTextPairs.add(new SectionSearchableTextPair(Section.builder()
.isLocal(false)
.dictionaryTypes(dictionary.getTypes())
@@ -139,6 +129,7 @@ public class EntityRedactionService {
.images(reanalysisSection.getImages())
.fileAttributes(analyzeRequest.getFileAttributes())
.build(), reanalysisSection.getSearchableText()));
}
Set<Entity> entities = new HashSet<>();
@@ -175,7 +166,7 @@ public class EntityRedactionService {
.getValue(), entity.getHeadline(), entity.getMatchedRule(), entity.getSectionNumber(), entity
.getLegalBasis(), entity.isDictionaryEntry(), entity.getTextBefore(), entity.getTextAfter(), entity
.getStart(), entity.getEnd(), entity.isDossierDictionaryEntry(), entity.getEngines(), entity
.getReferences()));
.getReferences(), entity.getEntityType()));
}
}
return entitiesPerPage;
@@ -197,26 +188,18 @@ public class EntityRedactionService {
private void addLocalValuesToDictionary(Section analysedSection, Dictionary dictionary) {
analysedSection.getLocalDictionaryAdds().keySet().forEach(key -> {
if (dictionary.isRecommendation(key)) {
analysedSection.getLocalDictionaryAdds().get(key).forEach(value -> {
if (!dictionary.containsValue(key, value)) {
dictionary.getLocalAccessMap().get(key).getLocalEntries().add(value);
}
});
} else {
analysedSection.getLocalDictionaryAdds().get(key).forEach(value -> {
analysedSection.getLocalDictionaryAdds().get(key).forEach(value -> {
if (dictionary.getLocalAccessMap().get(key) == null) {
log.warn("Dictionary {} is null", key);
}
if (dictionary.getLocalAccessMap().get(key) == null) {
log.warn("Dictionary {} is null", key);
}
if (dictionary.getLocalAccessMap().get(key).getLocalEntries() == null) {
log.warn("Dictionary {} localEntries is null", key);
}
if (dictionary.getLocalAccessMap().get(key).getLocalEntries() == null) {
log.warn("Dictionary {} localEntries is null", key);
}
dictionary.getLocalAccessMap().get(key).getLocalEntries().add(value);
});
}
dictionary.getLocalAccessMap().get(key).getLocalEntries().add(value);
});
});
}
@@ -226,20 +209,20 @@ public class EntityRedactionService {
List<Integer> cellStarts) {
Set<Entity> found = new HashSet<>();
String searchableString = searchableText.toString();
String searchableString = searchableText.asString();
if (StringUtils.isEmpty(searchableString)) {
return new Entities(new HashSet<>(), new HashSet<>());
}
String lowercaseInputString = searchableString.toLowerCase();
for (DictionaryModel model : dictionary.getDictionaryModels()) {
if (model.isCaseInsensitive()) {
EntitySearchUtils.addOrAddEngine(found, EntitySearchUtils.find(lowercaseInputString, model.getValues(local), model
.getType(), headline, sectionNumber, !local, model.isDossierDictionary(), local ? Engine.RULE : Engine.DICTIONARY, false));
} else {
EntitySearchUtils.addOrAddEngine(found, EntitySearchUtils.find(searchableString, model.getValues(local), model
.getType(), headline, sectionNumber, !local, model.isDossierDictionary(), local ? Engine.RULE : Engine.DICTIONARY, false));
}
var searchImplementation = local ? model.getLocalSearch() : model.getEntriesSearch();
var entities = EntitySearchUtils.findEntities(model.isCaseInsensitive() ? lowercaseInputString : searchableString,
searchImplementation, model, new FindEntityDetails(model.getType(),headline, sectionNumber, !local, model.isDossierDictionary(), local ? Engine.RULE : Engine.DICTIONARY, local? EntityType.RECOMMENDATION: EntityType.ENTITY));
EntitySearchUtils.addOrAddEngine(found, entities);
}
Set<Entity> nerFound = new HashSet<>();
@@ -256,10 +239,10 @@ public class EntityRedactionService {
Set<Entity> entities = new HashSet<>();
if (redactionServiceSettings.isNerServiceEnabled() && nerEntities.getResult().containsKey(sectionNumber)) {
nerEntities.getResult().get(sectionNumber).forEach(res -> {
if (redactionServiceSettings.isNerServiceEnabled() && nerEntities.getData().containsKey(sectionNumber)) {
nerEntities.getData().get(sectionNumber).forEach(res -> {
if (cellStarts == null || cellStarts.isEmpty()) {
entities.add(new Entity(res.getValue(), res.getType(), res.getStartOffset(), res.getEndOffset(), headline, sectionNumber, false, false, Engine.NER));
entities.add(new Entity(res.getValue(), res.getType(), res.getStartOffset(), res.getEndOffset(), headline, sectionNumber, false, false, Engine.NER, EntityType.RECOMMENDATION));
} else {
boolean intersectsCellStart = false;
for (Integer cellStart : cellStarts) {
@@ -269,7 +252,7 @@ public class EntityRedactionService {
}
}
if (!intersectsCellStart) {
entities.add(new Entity(res.getValue(), res.getType(), res.getStartOffset(), res.getEndOffset(), headline, sectionNumber, false, false, Engine.NER));
entities.add(new Entity(res.getValue(), res.getType(), res.getStartOffset(), res.getEndOffset(), headline, sectionNumber, false, false, Engine.NER, EntityType.RECOMMENDATION));
}
}
});
@@ -1,6 +1,6 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import java.util.Iterator;
import java.util.HashSet;
import java.util.List;
import org.springframework.stereotype.Service;
@@ -24,14 +24,15 @@ public class ImportedRedactionService {
public List<RedactionLogEntry> processImportedRedactions(String dossierTemplateId, String dossierId, String fileId,
List<RedactionLogEntry> redactionLogEntries, boolean addImportedRedactions) {
List<RedactionLogEntry> redactionLogEntries,
boolean addImportedRedactions) {
var importedRedactions = redactionStorageService.getImportedRedactions(dossierId, fileId);
if (importedRedactions == null) {
return redactionLogEntries;
}
redactionLogEntries.removeIf(redactionLogEntry -> hasIntersections(redactionLogEntry, importedRedactions));
redactionLogEntries.forEach(redactionLogEntry -> addIntersections(redactionLogEntry, importedRedactions));
if (addImportedRedactions) {
return addImportedRedactionsRedactionLogEntries(dossierTemplateId, redactionLogEntries, importedRedactions);
@@ -42,8 +43,8 @@ public class ImportedRedactionService {
private List<RedactionLogEntry> addImportedRedactionsRedactionLogEntries(String dossierTemplateId,
List<RedactionLogEntry> redactionLogEntries,
ImportedRedactions importedRedactions) {
List<RedactionLogEntry> redactionLogEntries,
ImportedRedactions importedRedactions) {
for (List<ImportedRedaction> importedRedactionsValues : importedRedactions.getImportedRedactions().values()) {
for (ImportedRedaction importedRedaction : importedRedactionsValues) {
@@ -53,7 +54,7 @@ public class ImportedRedactionService {
.imported(true)
.redacted(true)
.positions(importedRedaction.getPositions())
.color(getColor("imported_redaction", dossierTemplateId))
.color(getColor(IMPORTED_REDACTION_TYPE, dossierTemplateId))
.build();
redactionLogEntries.add(redactionLogEntry);
@@ -64,7 +65,7 @@ public class ImportedRedactionService {
}
private boolean hasIntersections(RedactionLogEntry redactionLogEntry, ImportedRedactions importedRedactions) {
private void addIntersections(RedactionLogEntry redactionLogEntry, ImportedRedactions importedRedactions) {
for (Rectangle rectangle : redactionLogEntry.getPositions()) {
if (importedRedactions.getImportedRedactions().containsKey(rectangle.getPage())) {
@@ -72,13 +73,15 @@ public class ImportedRedactionService {
for (ImportedRedaction importedRedaction : importedRedactionsOnPage) {
for (Rectangle importedRedactionPosition : importedRedaction.getPositions()) {
if (intersects(importedRedactionPosition, rectangle)) {
return true;
if(redactionLogEntry.getImportedRedactionIntersections() == null){
redactionLogEntry.setImportedRedactionIntersections(new HashSet<>());
}
redactionLogEntry.getImportedRedactionIntersections().add(importedRedaction.getId());
}
}
}
}
}
return false;
}
@@ -1,12 +1,5 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import java.util.ArrayList;
import java.util.List;
import java.util.Set;
import org.apache.commons.lang3.tuple.Pair;
import org.springframework.stereotype.Service;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactions;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.Rectangle;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.ManualRedactionEntry;
@@ -19,11 +12,19 @@ import com.iqser.red.service.redaction.v1.server.classification.model.Text;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
import com.iqser.red.service.redaction.v1.server.redaction.model.EntityPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.model.EntityType;
import com.iqser.red.service.redaction.v1.server.redaction.utils.EntitySearchUtils;
import com.iqser.red.service.redaction.v1.server.redaction.utils.FindEntityDetails;
import com.iqser.red.service.redaction.v1.server.redaction.utils.SearchImplementation;
import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
import org.apache.commons.lang3.tuple.Pair;
import org.springframework.stereotype.Service;
import java.util.ArrayList;
import java.util.List;
import java.util.Set;
@Slf4j
@Service
@@ -87,10 +88,10 @@ public class ManualRedactionSurroundingTextService {
}
private Pair<String, String> findSurroundingText(SectionText sectionText, String value,
List<Rectangle> toFindPositions) {
private Pair<String, String> findSurroundingText(SectionText sectionText, String value, List<Rectangle> toFindPositions) {
Set<Entity> entities = EntitySearchUtils.find(sectionText.getText(), Set.of(value), "dummy", sectionText.getHeadline(), sectionText.getSectionNumber(), false, false, Engine.DICTIONARY, false);
Set<Entity> entities = EntitySearchUtils.find(sectionText.getText(), new SearchImplementation(value, false),
new FindEntityDetails("dummy", sectionText.getHeadline(), sectionText.getSectionNumber(), false, false, Engine.DICTIONARY, EntityType.ENTITY));
Set<Entity> entitiesWithPositions = EntitySearchUtils.clearAndFindPositions(entities, sectionText.getSearchableText(), null);
Entity correctEntity = getEntityOnCorrectPosition(entitiesWithPositions, toFindPositions);
@@ -17,6 +17,7 @@ import com.iqser.red.service.redaction.v1.server.parsing.model.RedTextPosition;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
import com.iqser.red.service.redaction.v1.server.redaction.model.EntityPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.model.EntityType;
import com.iqser.red.service.redaction.v1.server.redaction.model.Image;
import com.iqser.red.service.redaction.v1.server.redaction.model.PageEntities;
import com.iqser.red.service.redaction.v1.server.redaction.utils.IdBuilder;
@@ -203,7 +204,8 @@ public class RedactionLogCreatorService {
.type(entity.getType())
.redacted(entity.isRedaction())
.isHint(isHint(entity.getType(), dossierTemplateId))
.isRecommendation(isRecommendation(entity.getType(), dossierTemplateId))
.isRecommendation(entity.getEntityType().equals(EntityType.RECOMMENDATION))
.isFalsePositive(entity.getEntityType().equals(EntityType.FALSE_POSITIVE) || entity.getEntityType().equals(EntityType.FALSE_RECOMMENDATION))
.section(entity.getHeadline())
.sectionNumber(entity.getSectionNumber())
.matchedRule(entity.getMatchedRule())
@@ -233,10 +235,4 @@ public class RedactionLogCreatorService {
return dictionaryService.isHint(type, dossierTemplateId);
}
private boolean isRecommendation(String type, String dossierTemplateId) {
return dictionaryService.isRecommendation(type, dossierTemplateId);
}
}
@@ -4,14 +4,23 @@ import com.iqser.red.service.persistence.service.v1.api.model.annotations.Annota
import com.iqser.red.service.persistence.service.v1.api.model.annotations.Comment;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactions;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.*;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.configuration.Colors;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.dossier.file.FileType;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.type.Type;
import com.iqser.red.service.redaction.v1.model.Point;
import com.iqser.red.service.redaction.v1.model.Rectangle;
import com.iqser.red.service.redaction.v1.model.*;
import com.iqser.red.service.redaction.v1.server.exception.NotFoundException;
import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
import lombok.AllArgsConstructor;
import lombok.Data;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
import org.springframework.stereotype.Service;
import java.awt.*;
import java.time.OffsetDateTime;
import java.util.List;
import java.util.*;
import java.util.stream.Collectors;
@@ -20,19 +29,55 @@ import java.util.stream.Collectors;
@RequiredArgsConstructor
public class RedactionLogMergeService {
private final DictionaryService dictionaryService;
private final SectionTextService sectionTextService;
private final RedactionStorageService redactionStorageService;
public RedactionLog mergeRedactionLogData(RedactionLog redactionLog, SectionGrid sectionGrid,
String dossierTemplateId, ManualRedactions manualRedactions,
Set<Integer> excludedPages) {
public RedactionLog provideRedactionLog(RedactionRequest redactionRequest) {
log.debug("Requested preview for: {}", redactionRequest);
var redactionLog = redactionStorageService.getRedactionLog(redactionRequest.getDossierId(), redactionRequest.getFileId());
if (redactionLog == null) {
throw new NotFoundException("RedactionLog not present");
}
SectionGrid sectionGrid = redactionStorageService.getSectionGrid(redactionRequest.getDossierId(), redactionRequest.getFileId());
if (sectionGrid.getSections().isEmpty()) {
log.info("SectionGrid does not have headlines set. Computing headlines now!");
var text = redactionStorageService.getText(redactionRequest.getDossierId(), redactionRequest.getFileId());
// enhance section grid with headline data
for (var sectionText : text.getSectionTexts()) {
sectionGrid.getSections()
.add(new SectionGrid.SectionGridSection(sectionText.getSectionNumber(), sectionText.getHeadline(), sectionText.getSectionAreas()
.stream()
.map(SectionArea::getPage)
.collect(Collectors.toSet()), sectionText.getSectionAreas()));
}
redactionStorageService.storeObject(redactionRequest.getDossierId(), redactionRequest.getFileId(), FileType.SECTION_GRID, sectionGrid);
}
log.debug("Loaded redaction log with computationalVersion: {}", redactionLog.getAnalysisVersion());
var merged = mergeRedactionLogData(redactionLog, sectionGrid, redactionRequest.getManualRedactions(), redactionRequest.getExcludedPages(), redactionRequest.getTypes(), redactionRequest.getColors());
merged.getRedactionLogEntry().removeIf(e -> e.isFalsePositive() && !redactionRequest.isIncludeFalsePositives());
return merged;
}
private RedactionLog mergeRedactionLogData(RedactionLog redactionLog, SectionGrid sectionGrid, ManualRedactions manualRedactions,
Set<Integer> excludedPages, List<Type> types, Colors colors) {
var skippedImportedRedactions = new HashSet<>();
log.info("Merging Redaction log with manual redactions");
if (manualRedactions != null) {
var manualRedactionLogEntries = addManualAddEntries(sectionGrid, manualRedactions.getEntriesToAdd(), manualRedactions.getComments(), dossierTemplateId);
var manualRedactionLogEntries = addManualAddEntries(sectionGrid, manualRedactions.getEntriesToAdd(), manualRedactions.getComments(), colors, types);
redactionLog.getRedactionLogEntry().addAll(manualRedactionLogEntries);
@@ -42,9 +87,13 @@ public class RedactionLogMergeService {
processRedactionLogEntry(manualRedactionWrappers.stream()
.filter(mr -> entry.getId().equals(mr.getId()))
.collect(Collectors.toList()), dossierTemplateId, entry);
.collect(Collectors.toList()), entry, types, colors);
entry.setComments(manualRedactions.getComments().get(entry.getId()));
if (entry.isImported() && !entry.isRedacted()) {
skippedImportedRedactions.add(entry.getId());
}
entry.setComments(convert(manualRedactions.getComments().get(entry.getId())));
if (excludedPages != null && !excludedPages.isEmpty()) {
entry.getPositions().forEach(pos -> {
@@ -59,6 +108,12 @@ public class RedactionLogMergeService {
Set<String> processedIds = new HashSet<>();
redactionLog.getRedactionLogEntry().removeIf(entry -> {
if (entry.getImportedRedactionIntersections() != null) {
entry.getImportedRedactionIntersections().removeAll(skippedImportedRedactions);
if (!entry.getImportedRedactionIntersections().isEmpty() && (!entry.isImage() || entry.isImage() && !(entry.getType().equals("image") || entry.getType().equals("ocr")))) {
return true;
}
}
if (processedIds.contains(entry.getId())) {
log.info("Duplicate annotation found with id {}", entry.getId());
return true;
@@ -111,7 +166,7 @@ public class RedactionLogMergeService {
private void processRedactionLogEntry(List<ManualRedactionWrapper> manualRedactionWrappers,
String dossierTemplateId, RedactionLogEntry redactionLogEntry) {
RedactionLogEntry redactionLogEntry, List<Type> types, Colors colors) {
manualRedactionWrappers.forEach(mrw -> {
@@ -124,7 +179,7 @@ public class RedactionLogMergeService {
redactionLogEntry.setType(imageRecategorization.getType());
redactionLogEntry.setSection("Image:" + redactionLogEntry.getType());
if (dictionaryService.isHint(imageRecategorization.getType(), dossierTemplateId)) {
if (isHint(types, imageRecategorization.getType())) {
redactionLogEntry.setRedacted(false);
redactionLogEntry.setHint(true);
} else {
@@ -134,7 +189,7 @@ public class RedactionLogMergeService {
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", recategorized by manual override");
} else if (imageRecategorization.getStatus().equals(AnnotationStatus.REQUESTED)) {
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", requested to recategorize");
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), dossierTemplateId, false, redactionLogEntry.isRedacted(), false));
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), colors, false, redactionLogEntry.isRedacted(), false, types));
}
redactionLogEntry.setReason(manualOverrideReason);
@@ -153,11 +208,11 @@ public class RedactionLogMergeService {
if (manualRemoval.getStatus().equals(AnnotationStatus.APPROVED)) {
redactionLogEntry.setRedacted(false);
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", removed by manual override");
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), dossierTemplateId, false, redactionLogEntry.isRedacted(), true));
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), colors, false, redactionLogEntry.isRedacted(), true, types));
redactionLogEntry.setHint(false);
} else if (manualRemoval.getStatus().equals(AnnotationStatus.REQUESTED)) {
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", requested to remove");
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), dossierTemplateId, true, redactionLogEntry.isRedacted(), false));
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), colors, true, redactionLogEntry.isRedacted(), false, types));
}
redactionLogEntry.setReason(manualOverrideReason);
@@ -171,7 +226,7 @@ public class RedactionLogMergeService {
if (mrw.getItem() instanceof ManualForceRedaction) {
var manualForceRedact = (ManualForceRedaction) mrw.getItem();
String manualOverrideReason = null;
var dictionaryIsHint = dictionaryService.isHint(redactionLogEntry.getType(), dossierTemplateId);
var dictionaryIsHint = isHint(types, redactionLogEntry.getType());
if (manualForceRedact.getStatus().equals(AnnotationStatus.APPROVED)) {
// Forcing a skipped hint should result in a hint
if (dictionaryIsHint) {
@@ -179,12 +234,12 @@ public class RedactionLogMergeService {
} else {
redactionLogEntry.setRedacted(true);
}
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), dossierTemplateId, false, redactionLogEntry.isRedacted(), false));
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), colors, false, redactionLogEntry.isRedacted(), false, types));
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", forced by manual override");
redactionLogEntry.setLegalBasis(manualForceRedact.getLegalBasis());
} else if (manualForceRedact.getStatus().equals(AnnotationStatus.REQUESTED)) {
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", requested to force " + (dictionaryIsHint ? "hint" : "redact"));
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), dossierTemplateId, true, redactionLogEntry.isRedacted(), false));
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), colors, true, redactionLogEntry.isRedacted(), false, types));
redactionLogEntry.setLegalBasis(manualForceRedact.getLegalBasis());
}
@@ -211,7 +266,7 @@ public class RedactionLogMergeService {
}
} else if (manualLegalBasisChange.getStatus().equals(AnnotationStatus.REQUESTED)) {
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", legal basis change requested");
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), dossierTemplateId, true, redactionLogEntry.isRedacted(), false));
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), colors, true, redactionLogEntry.isRedacted(), false, types));
}
redactionLogEntry.setReason(manualOverrideReason);
@@ -232,7 +287,7 @@ public class RedactionLogMergeService {
var manualResizeRedact = (ManualResizeRedaction) mrw.getItem();
String manualOverrideReason = null;
if (manualResizeRedact.getStatus().equals(AnnotationStatus.APPROVED)) {
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), dossierTemplateId, false, redactionLogEntry.isRedacted(), false));
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), colors, false, redactionLogEntry.isRedacted(), false, types));
redactionLogEntry.setPositions(convertPositions(manualResizeRedact.getPositions()));
redactionLogEntry.setValue(manualResizeRedact.getValue());
redactionLogEntry.setTextBefore(manualResizeRedact.getTextBefore());
@@ -240,7 +295,7 @@ public class RedactionLogMergeService {
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", resized by manual override");
} else if (manualResizeRedact.getStatus().equals(AnnotationStatus.REQUESTED)) {
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", requested to resize redact");
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), dossierTemplateId, true, redactionLogEntry.isRedacted(), false));
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), colors, true, redactionLogEntry.isRedacted(), false, types));
redactionLogEntry.setPositions(convertPositions(manualResizeRedact.getPositions()));
redactionLogEntry.setTextBefore(manualResizeRedact.getTextBefore());
redactionLogEntry.setTextAfter(manualResizeRedact.getTextAfter());
@@ -271,16 +326,16 @@ public class RedactionLogMergeService {
public List<RedactionLogEntry> addManualAddEntries(SectionGrid sectionGrid, Set<ManualRedactionEntry> manualAdds,
Map<String, List<Comment>> comments, String dossierTemplateId) {
Map<String, List<Comment>> comments, Colors colors, List<Type> types) {
List<RedactionLogEntry> redactionLogEntries = new ArrayList<>();
for (ManualRedactionEntry manualRedactionEntry : manualAdds) {
if (!approvedAndShouldBeInDictionary(manualRedactionEntry)) {
RedactionLogEntry redactionLogEntry = createRedactionLogEntry(manualRedactionEntry, manualRedactionEntry.getAnnotationId(), dossierTemplateId);
if (shouldCreateManualEntry(manualRedactionEntry)) {
RedactionLogEntry redactionLogEntry = createRedactionLogEntry(manualRedactionEntry, manualRedactionEntry.getAnnotationId(), colors, types);
redactionLogEntry.setPositions(convertPositions(manualRedactionEntry.getPositions()));
redactionLogEntry.setComments(comments.get(manualRedactionEntry.getAnnotationId()));
redactionLogEntry.setComments(convert(comments.get(manualRedactionEntry.getAnnotationId())));
redactionLogEntry.setTextBefore(manualRedactionEntry.getTextBefore());
redactionLogEntry.setTextAfter(manualRedactionEntry.getTextAfter());
@@ -293,6 +348,11 @@ public class RedactionLogMergeService {
return redactionLogEntries;
}
private List<RedactionLogComment> convert(List<Comment> comments) {
return comments == null ? null :comments.stream().map(c -> new RedactionLogComment(c.getId(), c.getUser(), c.getText(), c.getAnnotationId(),
c.getFileId(), c.getDate(), c.getSoftDeletedTime())).collect(Collectors.toList());
}
private List<Rectangle> convertPositions(
List<com.iqser.red.service.persistence.service.v1.api.model.annotations.Rectangle> positions) {
@@ -303,16 +363,15 @@ public class RedactionLogMergeService {
}
private boolean approvedAndShouldBeInDictionary(ManualRedactionEntry manualRedactionEntry) {
return manualRedactionEntry.getStatus().equals(AnnotationStatus.APPROVED) &&
manualRedactionEntry.getProcessedDate() != null &&
(manualRedactionEntry.isAddToDictionary() || manualRedactionEntry.isAddToDossierDictionary());
@SuppressWarnings("PMD.UselessParentheses")
private boolean shouldCreateManualEntry(ManualRedactionEntry manualRedactionEntry) {
return (!manualRedactionEntry.isAddToDictionary() && !manualRedactionEntry.isAddToDossierDictionary())
|| ((manualRedactionEntry.isAddToDictionary() || manualRedactionEntry.isAddToDictionary()) && manualRedactionEntry.getProcessedDate() == null);
}
private RedactionLogEntry createRedactionLogEntry(ManualRedactionEntry manualRedactionEntry, String id,
String dossierTemplateId) {
Colors colors, List<Type> types) {
var addToDictionary = manualRedactionEntry.isAddToDictionary() || manualRedactionEntry.isAddToDossierDictionary();
@@ -323,12 +382,13 @@ public class RedactionLogMergeService {
return RedactionLogEntry.builder()
.id(id)
.color(getColorForManualAdd(manualRedactionEntry.getType(), dossierTemplateId, manualRedactionEntry.getStatus()))
.color(getColorForManualAdd(manualRedactionEntry.getType(), colors, manualRedactionEntry.getStatus(), types))
.reason(manualRedactionEntry.getReason())
.isDictionaryEntry(manualRedactionEntry.isAddToDictionary())
.isDossierDictionaryEntry(manualRedactionEntry.isAddToDossierDictionary())
.legalBasis(manualRedactionEntry.getLegalBasis())
.value(manualRedactionEntry.getValue())
.sourceId(manualRedactionEntry.getSourceId())
.section(manualRedactionEntry.getSection())
.type(manualRedactionEntry.getType())
.redacted(true)
@@ -340,33 +400,66 @@ public class RedactionLogMergeService {
}
private float[] getColor(String type, String dossierTemplateId, boolean requested, boolean isRedaction,
boolean skipped) {
private float[] getColor(String type, Colors colors, boolean requested, boolean isRedaction,
boolean skipped, List<Type> types) {
if (requested) {
return dictionaryService.getRequestRemoveColor(dossierTemplateId);
return convertColor(colors.getRequestRemove());
}
if (skipped || !isRedaction && !dictionaryService.isHint(type, dossierTemplateId)) {
return dictionaryService.getNotRedactedColor(dossierTemplateId);
if (skipped || !isRedaction && !isHint(types, type)) {
return convertColor(colors.getNotRedacted());
}
return dictionaryService.getColor(type, dossierTemplateId);
return getColor(types, type);
}
private float[] getColorForManualAdd(String type, String dossierTemplateId, AnnotationStatus status) {
private float[] getColorForManualAdd(String type, Colors colors, AnnotationStatus status, List<Type> types) {
if (status.equals(AnnotationStatus.REQUESTED)) {
return dictionaryService.getRequestAddColor(dossierTemplateId);
return convertColor(colors.getRequestAdd());
} else if (status.equals(AnnotationStatus.DECLINED)) {
return dictionaryService.getNotRedactedColor(dossierTemplateId);
return convertColor(colors.getNotRedacted());
}
return getColor(type, dossierTemplateId);
return getColor(types, type);
}
private float[] getColor(String type, String dossierTemplateId) {
private float[] getColor(List<Type> types, String type) {
return dictionaryService.getColor(type, dossierTemplateId);
var matchingTypes = getMatchingTypes(types, type);
Optional<Type> foundAndNotDeletedType = matchingTypes.stream().filter(t -> !isDeletedType(t)).findFirst();
if (foundAndNotDeletedType.isPresent()) {
return convertColor(foundAndNotDeletedType.get().getHexColor());
}
Optional<Type> firstDeletedType = matchingTypes.stream().findFirst();
return firstDeletedType.map(value -> convertColor(value.getHexColor())).orElseGet(() -> convertColor("#9398a0"));
}
boolean isHint(List<Type> types, String type) {
var matchingTypes = getMatchingTypes(types, type);
Optional<Type> foundAndNotDeletedType = matchingTypes.stream().filter(t -> !isDeletedType(t)).findFirst();
if (foundAndNotDeletedType.isPresent()) {
return foundAndNotDeletedType.get().isHint();
}
Optional<Type> firstDeletedType = matchingTypes.stream().findFirst();
return firstDeletedType.map(Type::isHint).orElse(false);
}
private float[] convertColor(String hex) {
Color color = Color.decode(hex);
return new float[]{color.getRed() / 255f, color.getGreen() / 255f, color.getBlue() / 255f};
}
private List<Type> getMatchingTypes(List<Type> types, String type) {
return types.stream().filter(t -> t.getType().equals(type)).collect(Collectors.toList());
}
private boolean isDeletedType(Type type) {
return type.getSoftDeletedTime() != null;
}
@@ -46,7 +46,7 @@ public class SectionGridCreatorService {
.getRectanglesPerPage()
.computeIfAbsent(page, (x) -> new ArrayList<>())
.add(new SectionRectangle(new Point(textBlock.getMinX(), textBlock.getMinY()), textBlock.getWidth(), textBlock
.getHeight(), i + 1, paragraph.getPageBlocks().size()));
.getHeight(), i + 1, paragraph.getPageBlocks().size(),null));
} else if (textBlock instanceof Table) {
@@ -79,7 +79,7 @@ public class SectionTextBuilderService {
.get(0)
.getSequences()
.get(0)
.getPage());
.getPage(), null);
sectionText.getSectionAreas().add(sectionArea);
sectionText.getTextBlocks().addAll(cell.getTextBlocks());
@@ -141,7 +141,7 @@ public class SectionTextBuilderService {
.get(0)
.getSequences()
.get(0)
.getPage());
.getPage(), null);
sectionText.getTextBlocks().addAll(cell.getTextBlocks());
sectionText.getSectionAreas().add(sectionArea);
@@ -171,11 +171,11 @@ public class SectionTextBuilderService {
SectionText sectionText = new SectionText();
for (TextBlock paragraphTextBlock : paragraphTextBlocks) {
SectionArea sectionArea = new SectionArea(new Point(paragraphTextBlock.getMinX(), paragraphTextBlock.getMinY()), paragraphTextBlock
.getWidth(), paragraphTextBlock.getHeight(), paragraphTextBlock.getPage());
.getWidth(), paragraphTextBlock.getHeight(), paragraphTextBlock.getPage(), null);
sectionText.getSectionAreas().add(sectionArea);
}
sectionText.setText(searchableText.toString());
sectionText.setText(searchableText.asString());
sectionText.setHeadline(headline);
sectionText.setSectionNumber(sectionNumber.intValue());
sectionText.setTable(false);
@@ -31,7 +31,7 @@ public class SurroundingWordsService {
if (dictionary != null && dictionary.isHint(entity.getType())) {
continue;
}
findSurroundingWords(entity, searchableText.toString(), entity.getStart(), entity.getEnd());
findSurroundingWords(entity, searchableText.asString(), entity.getStart(), entity.getEnd());
}
} catch (Exception e) {
log.warn("Could not get surrounding text!");
@@ -47,7 +47,7 @@ public class SurroundingWordsService {
}
try {
String searchableString = searchableText.toString();
String searchableString = searchableText.asString();
if (cellstarts != null) {
for (int i = 0; i < cellstarts.size(); i++) {
@@ -1,90 +1,57 @@
package com.iqser.red.service.redaction.v1.server.redaction.utils;
import java.util.ArrayList;
import java.util.Comparator;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Locale;
import java.util.Map;
import java.util.Optional;
import java.util.Set;
import java.util.regex.Pattern;
import java.util.stream.Collectors;
import com.iqser.red.service.redaction.v1.model.Engine;
import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryIncrementValue;
import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
import com.iqser.red.service.redaction.v1.server.redaction.model.EntityPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
import com.iqser.red.service.redaction.v1.server.redaction.model.*;
import lombok.experimental.UtilityClass;
import lombok.extern.slf4j.Slf4j;
import java.util.*;
import java.util.regex.Pattern;
import java.util.stream.Collectors;
@Slf4j
@UtilityClass
@SuppressWarnings("PMD")
public class EntitySearchUtils {
public boolean sectionContainsAny(String sectionText, Set<DictionaryIncrementValue> values) {
String inputString = sectionText.toLowerCase(Locale.ROOT);
for (DictionaryIncrementValue value : values) {
String cleanValue = value.getValue().toLowerCase(Locale.ROOT).trim();
if (cleanValue.length() <= 2) {
continue;
}
int startIndex;
int stopIndex = 0;
do {
startIndex = inputString.indexOf(cleanValue, stopIndex);
stopIndex = startIndex + cleanValue.length();
if (startIndex > -1 && (startIndex == 0 || Character.isWhitespace(inputString.charAt(startIndex - 1)) || isSeparator(inputString.charAt(startIndex - 1))) && (stopIndex == inputString.length() || isSeparator(inputString.charAt(stopIndex)))) {
return true;
}
} while (startIndex > -1);
}
return false;
public boolean sectionContainsAny(String sectionText, SearchImplementation searchImplementation) {
return searchImplementation.atLeastOneMatches(sectionText);
}
public Set<Entity> findEntities(String inputString, SearchImplementation searchImplementation, DictionaryModel type, FindEntityDetails details) {
public Set<Entity> find(String inputString, Set<String> values, String type, String headline, int sectionNumber,
boolean isDictionaryEntry, boolean isDossierDictionary, Engine engine, boolean ignoreMinLength) {
Set<Entity> found = find(inputString, searchImplementation, details);
Set<Entity> found = new HashSet<>();
for (String value : values) {
String cleanValue = value.trim();
if (!ignoreMinLength && cleanValue.length() <= 2) {
continue;
}
int startIndex;
int stopIndex = 0;
do {
startIndex = inputString.indexOf(cleanValue, stopIndex);
stopIndex = startIndex + cleanValue.length();
if (startIndex > -1 && (startIndex == 0 || Character.isWhitespace(inputString.charAt(startIndex - 1)) || isSeparator(inputString.charAt(startIndex - 1))) && (stopIndex == inputString.length() || isSeparator(inputString.charAt(stopIndex)))) {
found.add(new Entity(inputString.substring(startIndex, stopIndex), type, startIndex, stopIndex, headline, sectionNumber, isDictionaryEntry, isDossierDictionary, engine));
}
} while (startIndex > -1);
if (details.getEntityType() == EntityType.RECOMMENDATION) {
Set<Entity> falseRecommendations = find(inputString, type.getFalseRecommendationsSearch(), details.withEntityType(EntityType.FALSE_RECOMMENDATION));
removeFalsePositives(found, falseRecommendations);
found.addAll(falseRecommendations);
} else {
Set<Entity> falsePositives = find(inputString, type.getFalsePositiveSearch(), details.withEntityType(EntityType.FALSE_POSITIVE));
removeFalsePositives(found, falsePositives);
found.addAll(falsePositives);
}
return found;
}
public Set<Entity> find(String inputString, SearchImplementation searchImplementation, FindEntityDetails findEntityDetails) {
Set<Entity> entities = new HashSet<>();
private boolean isSeparator(char c) {
searchImplementation.getMatches(inputString).forEach(match -> validateAndAddEntity(entities, findEntityDetails, inputString, match.getStartIndex(), match.getEndIndex()));
return Character.isWhitespace(c) || Pattern.matches("\\p{Punct}", String.valueOf(c)) || c == '\"' || c == '‘' || c == '’';
return entities;
}
private void validateAndAddEntity(Set<Entity> entities, FindEntityDetails findEntityDetails, String inputString, int startIndex, int stopIndex) {
if ((startIndex == 0 || SeparatorUtils.isSeparator(inputString.charAt(startIndex - 1)))
&& (stopIndex == inputString.length() || SeparatorUtils.isSeparator(inputString.charAt(stopIndex)))) {
entities.add(new Entity(inputString.substring(startIndex, stopIndex), findEntityDetails.getType(), startIndex, stopIndex,
findEntityDetails.getHeadline(), findEntityDetails.getSectionNumber(), findEntityDetails.isDictionaryEntry(),
findEntityDetails.isDossierDictionary(), findEntityDetails.getEngine(), findEntityDetails.getEntityType()));
}
}
@@ -98,13 +65,10 @@ public class EntitySearchUtils {
for (String word : entitiesByWord.keySet()) {
List<Entity> orderedEntities = entitiesByWord.get(word)
.stream()
.sorted(Comparator.comparing(Entity::getStart))
.collect(Collectors.toList());
List<Entity> orderedEntities = entitiesByWord.get(word).stream().sorted(Comparator.comparing(Entity::getStart)).collect(Collectors.toList());
Entity firstEntity = orderedEntities.get(0);
List<EntityPositionSequence> positionSequences = text.getSequences(firstEntity.getWord()
.trim(), dictionary == null ? true : dictionary.isCaseInsensitiveDictionary(firstEntity.getType()), firstEntity.getTargetSequences());
.trim(), dictionary == null || dictionary.isCaseInsensitiveDictionary(firstEntity.getType()), firstEntity.getTargetSequences());
for (int i = 0; i <= orderedEntities.size() - 1; i++) {
try {
@@ -121,6 +85,22 @@ public class EntitySearchUtils {
}
public void removeFalsePositives(Set<Entity> entities, Set<Entity> falsePositives) {
List<Entity> wordsToRemove = new ArrayList<>();
for (Entity word : falsePositives) {
for (Entity inner : entities) {
if (inner.getWord().length() < word.getWord()
.length() && inner.getStart() >= word.getStart() && inner.getEnd() <= word.getEnd() && word != inner && word.getSectionNumber() == inner.getSectionNumber()) {
wordsToRemove.add(inner);
}
}
}
wordsToRemove.forEach(entities::remove);
entities.removeAll(falsePositives);
}
public void removeEntitiesContainedInLarger(Set<Entity> entities) {
List<Entity> wordsToRemove = new ArrayList<>();
@@ -128,16 +108,44 @@ public class EntitySearchUtils {
for (Entity inner : entities) {
if (inner.getWord().length() < word.getWord()
.length() && inner.getStart() >= word.getStart() && inner.getEnd() <= word.getEnd() && word != inner && word.getSectionNumber() == inner.getSectionNumber()) {
// FIXME this is workaround for RED-3327 and should be removed in the future.
if(word.getType().contains("recommendation_") && !inner.getType().contains("recommendation_")) {
if (word.getEntityType().equals(EntityType.RECOMMENDATION) && inner.getEntityType().equals(EntityType.ENTITY)) {
wordsToRemove.add(word);
} else {
} else if(!(inner.getEntityType() == EntityType.FALSE_RECOMMENDATION && word.getEntityType() == EntityType.ENTITY ||
inner.getEntityType() == EntityType.ENTITY && word.getEntityType() == EntityType.FALSE_RECOMMENDATION)) {
wordsToRemove.add(inner);
}
}
}
}
entities.removeAll(wordsToRemove);
wordsToRemove.stream().filter(e -> !e.getEntityType().equals(EntityType.FALSE_POSITIVE) && !e.getEntityType().equals(EntityType.FALSE_RECOMMENDATION)).forEach(entities::remove);
}
public static void removeEntitiesContainedInRedactedLogos(Map<Integer, Set<Image>> imagesPerPage, Map<Integer, List<Entity>> entitiesPerPage) {
if (entitiesPerPage != null && imagesPerPage != null) {
for (int page : imagesPerPage.keySet()) {
Set<Entity> removeEntitiesFromPage = new HashSet<>();
if (!entitiesPerPage.containsKey(page)) {
continue;
}
imagesPerPage.get(page).forEach(image -> {
if (image.isRedaction()) {
entitiesPerPage.get(page).forEach(entity -> {
if (isImageOverlappingEntity(image, entity)) {
log.info("Logo overlaps entity and entity will be removed");
removeEntitiesFromPage.add(entity);
}
});
}
});
entitiesPerPage.get(page).removeAll(removeEntitiesFromPage);
}
}
}
@@ -151,13 +159,20 @@ public class EntitySearchUtils {
if (entities.contains(found)) {
Optional<Entity> existingOptional = entities.stream().filter(entity -> entity.equals(found)).findFirst();
if (!existingOptional.isPresent()) {
if (existingOptional.isEmpty()) {
return;
}
var existing = existingOptional.get();
if (existing.getType().equals(found.getType())) {
existing.getEngines().addAll(found.getEngines());
if (existing.getEntityType().equals(EntityType.RECOMMENDATION) && found.getEntityType().equals(EntityType.ENTITY)
|| existing.getEntityType().equals(EntityType.ENTITY) && found.getEntityType().equals(EntityType.RECOMMENDATION)) {
existing.setEntityType(EntityType.ENTITY);
if (found.isRedaction()) {
existing.setRedaction(true);
}
}
} else if (dictionary.getDictionaryRank(existing.getType()) <= dictionary.getDictionaryRank(found.getType())) {
entities.remove(found);
entities.add(found);
@@ -175,22 +190,17 @@ public class EntitySearchUtils {
}
public void addOrAddEngine(Set<Entity> existing, Set<Entity> toBeAdded) {
private boolean isImageOverlappingEntity(Image image, Entity entity) {
for (Entity toAdd : toBeAdded) {
if (existing.contains(toAdd)) {
Optional<Entity> existingOptional = existing.stream()
.filter(entity -> entity.equals(toAdd))
.findFirst();
if (!existingOptional.isPresent()) {
return;
}
var existingEntity = existingOptional.get();
existingEntity.getEngines().addAll(toAdd.getEngines());
} else {
existing.add(toAdd);
}
}
return image.getPosition() != null && entity.getPositionSequences() != null && entity.getPositionSequences().get(0) != null && entity.getPositionSequences()
.get(0)
.getSequences() != null && entity.getPositionSequences().get(0).getSequences().get(0) != null && image.getPosition().getX() < entity.getPositionSequences()
.get(0)
.getSequences()
.get(0)
.getX1() && image.getPosition().getX() + image.getPosition().getWidth() > entity.getPositionSequences().get(0).getSequences().get(0).getX2() && image.getPosition()
.getY() < entity.getPositionSequences().get(0).getSequences().get(0).getY1() && image.getPosition().getY() + image.getPosition()
.getHeight() > entity.getPositionSequences().get(0).getSequences().get(0).getY2();
}
@@ -210,11 +220,32 @@ public class EntitySearchUtils {
}
public void addOrAddEngine(Set<Entity> existing, Set<Entity> toBeAdded) {
for (Entity toAdd : toBeAdded) {
if (existing.contains(toAdd)) {
Optional<Entity> existingOptional = existing.stream().filter(entity -> entity.equals(toAdd)).findFirst();
if (existingOptional.isEmpty()) {
return;
}
var existingEntity = existingOptional.get();
existingEntity.getEngines().addAll(toAdd.getEngines());
} else {
existing.add(toAdd);
}
}
}
/*
* returns true if the found entity overlaps with an existing entity in a way
* that neither entity is a subset of the other
*/
private boolean overlaps(Set<Entity> existingEntities, Entity found) {
for (Entity existing : existingEntities) {
if(existing.getStart().equals(found.getStart())){
// skip if either start or end is equal
if (existing.getStart().equals(found.getStart()) || existing.getEnd().equals(found.getEnd())) {
continue;
}
@@ -0,0 +1,24 @@
package com.iqser.red.service.redaction.v1.server.redaction.utils;
import com.iqser.red.service.redaction.v1.model.Engine;
import com.iqser.red.service.redaction.v1.server.redaction.model.EntityType;
import lombok.AllArgsConstructor;
import lombok.Data;
@Data
@AllArgsConstructor
public class FindEntityDetails {
private String type;
private String headline;
private int sectionNumber;
private boolean isDictionaryEntry;
private boolean isDossierDictionary;
private Engine engine;
private EntityType entityType;
public FindEntityDetails withEntityType(EntityType entityType) {
this.entityType = entityType;
return this;
}
}
@@ -0,0 +1,92 @@
package com.iqser.red.service.redaction.v1.server.redaction.utils;
import lombok.AllArgsConstructor;
import lombok.Data;
import org.ahocorasick.trie.Trie;
import java.util.ArrayList;
import java.util.Collection;
import java.util.List;
import java.util.Locale;
import java.util.regex.Pattern;
import java.util.stream.Collectors;
@Data
public class SearchImplementation {
private boolean ignoreCase;
private List<String> values;
private Pattern pattern;
private Trie trie;
public SearchImplementation(String value, boolean ignoreCase) {
this.values = List.of(value);
this.ignoreCase = ignoreCase;
this.createSearchImplementation();
}
public SearchImplementation(Collection<String> values, boolean ignoreCase) {
this.values = new ArrayList<>(values);
this.ignoreCase = ignoreCase;
this.createSearchImplementation();
}
private void createSearchImplementation() {
if (this.values.isEmpty()) {
return;
}
if (this.values.size() == 1) {
var text = this.values.iterator().next();
this.pattern = Pattern.compile(Pattern.quote(ignoreCase ? text.toLowerCase(Locale.ROOT) : text));
} else {
var builder = Trie.builder();
if (this.ignoreCase) {
builder.ignoreCase();
}
builder.addKeywords(this.values);
this.trie = builder.build();
}
}
public boolean atLeastOneMatches(String text) {
String textToCheck = text;
if (this.values.isEmpty()) {
return false;
}
if (this.pattern != null) {
if (ignoreCase) {
textToCheck = textToCheck.toLowerCase(Locale.ROOT);
}
return this.pattern.matcher(textToCheck).results().findAny().isPresent();
} else {
return this.trie.containsMatch(textToCheck);
}
}
public List<MatchPosition> getMatches(String text) {
String textToCheck = text;
if (this.values.isEmpty()) {
return new ArrayList<>();
}
if (this.pattern != null) {
if (ignoreCase) {
textToCheck = textToCheck.toLowerCase(Locale.ROOT);
}
return this.pattern.matcher(textToCheck).results().map(r -> new MatchPosition(r.start(), r.end())).collect(Collectors.toList());
} else {
return this.trie.parseText(textToCheck).stream().map(r -> new MatchPosition(r.getStart(), r.getEnd() + 1)).collect(Collectors.toList());
}
}
@Data
@AllArgsConstructor
public static class MatchPosition {
private int startIndex;
private int endIndex;
}
}
@@ -0,0 +1,15 @@
package com.iqser.red.service.redaction.v1.server.redaction.utils;
import java.util.Set;
import java.util.regex.Pattern;
public class SeparatorUtils {
private final static Set<Character> quotes = Set.of('\'', '\u0022', '\u00AB', '\u00BB', '\u2018', '\u2019', '\u201A', '\u201C', '\u201D', '\u201E'
, '\u2039', '\u203A');
public static boolean isSeparator(char c) {
return Character.isWhitespace(c) || Pattern.matches("\\p{Punct}", String.valueOf(c)) || quotes.contains(c);
}
}
@@ -31,10 +31,12 @@ public class ImageService {
public Map<Integer, List<PdfImage>> convertImages(String dossierId, String fileId){
var imageClassificationStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(dossierId, fileId, FileType.IMAGE_INFO));
ImageServiceResponse imageServiceResponse = objectMapper.readValue(imageClassificationStream, ImageServiceResponse.class);
Map<Integer, List<PdfImage>> images = new HashMap<>();
imageServiceResponse.getImageMetadata().stream().forEach(imageMetadata -> {
imageServiceResponse.getData().forEach(imageMetadata -> {
var classification = imageMetadata.getFilters().isAllPassed() ? ImageType.valueOf(imageMetadata.getClassification().getLabel().toUpperCase(Locale.ROOT)) : ImageType.OTHER;
images.computeIfAbsent(imageMetadata.getPosition().getPageNumber() ,x -> new ArrayList<>())
.add(new PdfImage(new RedRectangle2D(imageMetadata.getPosition().getX1(), imageMetadata.getPosition().getY1(), imageMetadata.getGeometry().getWidth(), imageMetadata.getGeometry().getHeight()), classification, imageMetadata.getPosition().getPageNumber()));
@@ -1,5 +1,27 @@
package com.iqser.red.service.redaction.v1.server.segmentation;
import com.iqser.red.service.redaction.v1.server.classification.model.Document;
import com.iqser.red.service.redaction.v1.server.classification.model.Page;
import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
import com.iqser.red.service.redaction.v1.server.classification.service.BlockificationService;
import com.iqser.red.service.redaction.v1.server.classification.service.ClassificationService;
import com.iqser.red.service.redaction.v1.server.parsing.PDFLinesTextStripper;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.model.PdfImage;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.CleanRulings;
import com.iqser.red.service.redaction.v1.server.tableextraction.service.RulingCleaningService;
import com.iqser.red.service.redaction.v1.server.tableextraction.service.TableExtractionService;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
import org.apache.commons.io.IOUtils;
import org.apache.commons.lang3.SystemUtils;
import org.apache.pdfbox.io.MemoryUsageSetting;
import org.apache.pdfbox.pdmodel.PDDocument;
import org.apache.pdfbox.pdmodel.PDPage;
import org.apache.pdfbox.pdmodel.common.PDRectangle;
import org.springframework.stereotype.Service;
import java.io.File;
import java.io.FileOutputStream;
import java.io.IOException;
@@ -13,38 +35,11 @@ import java.util.List;
import java.util.Map;
import java.util.Set;
import org.apache.commons.io.IOUtils;
import org.apache.commons.lang3.SystemUtils;
import org.apache.pdfbox.io.MemoryUsageSetting;
import org.apache.pdfbox.pdmodel.PDDocument;
import org.apache.pdfbox.pdmodel.PDPage;
import org.apache.pdfbox.pdmodel.common.PDRectangle;
import org.springframework.stereotype.Service;
import com.iqser.red.service.redaction.v1.server.classification.model.Document;
import com.iqser.red.service.redaction.v1.server.classification.model.Page;
import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
import com.iqser.red.service.redaction.v1.server.classification.service.BlockificationService;
import com.iqser.red.service.redaction.v1.server.classification.service.ClassificationService;
import com.iqser.red.service.redaction.v1.server.memory.MemoryStats;
import com.iqser.red.service.redaction.v1.server.parsing.PDFLinesTextStripper;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.model.PdfImage;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.CleanRulings;
import com.iqser.red.service.redaction.v1.server.tableextraction.service.RulingCleaningService;
import com.iqser.red.service.redaction.v1.server.tableextraction.service.TableExtractionService;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
@Slf4j
@Service
@RequiredArgsConstructor
public class PdfSegmentationService {
private final static int MAX_PAGES_BEFORE_GC = 250;
private final RulingCleaningService rulingCleaningService;
private final TableExtractionService tableExtractionService;
private final BlockificationService blockificationService;
@@ -60,11 +55,10 @@ public class PdfSegmentationService {
//create tempFile
File tempFile;
if(SystemUtils.IS_OS_UNIX) {
if (SystemUtils.IS_OS_UNIX) {
FileAttribute<Set<PosixFilePermission>> attr = PosixFilePermissions.asFileAttribute(PosixFilePermissions.fromString("rwx------"));
tempFile = Files.createTempFile("document", ".pdf", attr).toFile();
}
else {
} else {
tempFile = Files.createTempFile("document", ".pdf").toFile();
tempFile.setReadable(true, true);
tempFile.setWritable(true, true);
@@ -78,15 +72,12 @@ public class PdfSegmentationService {
Document document = new Document();
List<Page> pages = new ArrayList<>();
pdDocument = reinitializePDDocument(tempFile, null);
pdDocument = PDDocument.load(tempFile, MemoryUsageSetting.setupMixed(1024 * 1024 * 64));
pdDocument.setAllSecurityToBeRemoved(true);
long pageCount = pdDocument.getNumberOfPages();
for (int pageNumber = 1; pageNumber <= pageCount; pageNumber++) {
if (pageNumber % MAX_PAGES_BEFORE_GC == 0) {
pdDocument = reinitializePDDocument(tempFile, pdDocument);
}
PDFLinesTextStripper stripper = new PDFLinesTextStripper();
PDPage pdPage = pdDocument.getPage(pageNumber - 1);
stripper.setPageNumber(pageNumber);
@@ -107,6 +98,7 @@ public class PdfSegmentationService {
Page page = blockificationService.blockify(stripper.getTextPositionSequences(), cleanRulings.getHorizontal(), cleanRulings
.getVertical());
PDRectangle cropbox = pdPage.getCropBox();
float cropboxArea = cropbox.getHeight() * cropbox.getWidth();
page.setCropBoxArea(cropboxArea);
@@ -134,11 +126,10 @@ public class PdfSegmentationService {
sectionsBuilderService.buildSections(document);
sectionsBuilderService.addImagesToSections(document);
pdDocument = reinitializePDDocument(tempFile, pdDocument);
IOUtils.close(pdDocument);
if(!tempFile.delete()){
if (!tempFile.delete()) {
log.warn("Could not delete tmp file");
}
@@ -152,23 +143,6 @@ public class PdfSegmentationService {
}
private PDDocument reinitializePDDocument(File tempFile, PDDocument pdDocument) throws IOException {
if (pdDocument != null) {
pdDocument.close();
}
System.runFinalization();
System.gc();
MemoryStats.printMemoryStats();
var newPDDocument = PDDocument.load(tempFile, MemoryUsageSetting.setupTempFileOnly());
newPDDocument.setAllSecurityToBeRemoved(true);
return newPDDocument;
}
private void increaseDocumentStatistics(Page page, Document document) {
if (!page.isLandscape()) {
@@ -20,4 +20,6 @@ public class RedactionServiceSettings {
private boolean nerServiceEnabled = true;
private boolean priorityMode;
}
@@ -1,12 +1,7 @@
package com.iqser.red.service.redaction.v1.server.storage;
import java.io.IOException;
import java.io.InputStream;
import org.springframework.core.io.InputStreamResource;
import org.springframework.stereotype.Service;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.dslplatform.json.DslJson;
import com.dslplatform.json.runtime.Settings;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.dossier.file.FileType;
import com.iqser.red.service.redaction.v1.model.ImportedRedactions;
import com.iqser.red.service.redaction.v1.model.RedactionLog;
@@ -16,20 +11,26 @@ import com.iqser.red.service.redaction.v1.server.client.model.NerEntities;
import com.iqser.red.service.redaction.v1.server.exception.NotFoundException;
import com.iqser.red.storage.commons.exception.StorageObjectDoesNotExist;
import com.iqser.red.storage.commons.service.StorageService;
import lombok.Getter;
import lombok.RequiredArgsConstructor;
import lombok.SneakyThrows;
import lombok.extern.slf4j.Slf4j;
import org.springframework.core.io.InputStreamResource;
import org.springframework.stereotype.Service;
import java.io.ByteArrayOutputStream;
import java.io.IOException;
import java.io.InputStream;
@Slf4j
@Service
@RequiredArgsConstructor
public class RedactionStorageService {
private final ObjectMapper objectMapper;
private final StorageService storageService;
private final DslJson<Object> dslJson = new DslJson<>(Settings.basicSetup());
@SneakyThrows
public InputStream getStoredObject(String storageId) {
@@ -40,8 +41,15 @@ public class RedactionStorageService {
@SneakyThrows
public void storeObject(String dossierId, String fileId, FileType fileType, Object any) {
var baos = new ByteArrayOutputStream();
dslJson.serialize(any, baos);
storageService.storeObject(StorageIdUtils.getStorageId(dossierId, fileId, fileType), baos.toByteArray());
}
storageService.storeObject(StorageIdUtils.getStorageId(dossierId, fileId, fileType), objectMapper.writeValueAsBytes(any));
@SneakyThrows
public void storeObject(String dossierId, String fileId, FileType fileType, InputStream inputStream) {
storageService.storeObject(StorageIdUtils.getStorageId(dossierId, fileId, fileType), inputStream);
}
@@ -56,7 +64,7 @@ public class RedactionStorageService {
}
try {
return objectMapper.readValue(inputStreamResource.getInputStream(), ImportedRedactions.class);
return dslJson.deserialize(ImportedRedactions.class, inputStreamResource.getInputStream());
} catch (IOException e) {
throw new RuntimeException("Could not imported redactions", e);
}
@@ -74,7 +82,7 @@ public class RedactionStorageService {
}
try {
return objectMapper.readValue(inputStreamResource.getInputStream(), RedactionLog.class);
return dslJson.deserialize(RedactionLog.class, inputStreamResource.getInputStream());
} catch (IOException e) {
throw new RuntimeException("Could not convert RedactionLog", e);
}
@@ -92,7 +100,7 @@ public class RedactionStorageService {
}
try {
return objectMapper.readValue(inputStreamResource.getInputStream(), Text.class);
return dslJson.deserialize(Text.class, inputStreamResource.getInputStream());
} catch (IOException e) {
throw new RuntimeException("Could not convert Text", e);
}
@@ -109,7 +117,7 @@ public class RedactionStorageService {
}
try {
return objectMapper.readValue(inputStreamResource.getInputStream(), NerEntities.class);
return dslJson.deserialize(NerEntities.class, inputStreamResource.getInputStream());
} catch (IOException e) {
throw new RuntimeException("Could not convert NER Entities", e);
}
@@ -120,7 +128,7 @@ public class RedactionStorageService {
try {
var sectionGrid = storageService.getObject(StorageIdUtils.getStorageId(dossierId, fileId, FileType.SECTION_GRID));
return objectMapper.readValue(sectionGrid.getInputStream(), SectionGrid.class);
return dslJson.deserialize(SectionGrid.class, sectionGrid.getInputStream());
} catch (StorageObjectDoesNotExist e) {
throw new NotFoundException("Section Grid is not available.");
} catch (IOException e) {
@@ -1,9 +1,9 @@
package com.iqser.red.service.redaction.v1.server.tableextraction.model;
import com.dslplatform.json.JsonAttribute;
import com.fasterxml.jackson.annotation.JsonIgnore;
import com.iqser.red.service.redaction.v1.model.Rectangle;
import com.iqser.red.service.redaction.v1.server.classification.model.Orientation;
import lombok.AllArgsConstructor;
import lombok.Data;
import lombok.NoArgsConstructor;
@@ -33,11 +33,13 @@ public abstract class AbstractTextContainer {
}
@JsonIgnore
@JsonAttribute(ignore = true)
public float getHeight() {
return maxY - minY;
}
@JsonIgnore
@JsonAttribute(ignore = true)
public float getWidth() {
return maxX - minX;
}
@@ -9,6 +9,8 @@ server:
port: 8080
spring:
main:
allow-circular-references: true # FIXME
profiles:
active: kubernetes
rabbitmq:
@@ -0,0 +1,115 @@
package com.iqser.red.service.redaction.v1.server;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.configuration.Colors;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.type.DictionaryEntry;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.type.Type;
import com.iqser.red.service.redaction.v1.server.client.DictionaryClient;
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryVersion;
import com.iqser.red.service.redaction.v1.server.redaction.service.DictionaryService;
import com.iqser.red.storage.commons.StorageAutoConfiguration;
import com.iqser.red.storage.commons.service.StorageService;
import org.junit.Test;
import org.junit.runner.RunWith;
import org.kie.api.runtime.KieContainer;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.boot.autoconfigure.EnableAutoConfiguration;
import org.springframework.boot.autoconfigure.amqp.RabbitAutoConfiguration;
import org.springframework.boot.test.context.SpringBootTest;
import org.springframework.boot.test.mock.mockito.MockBean;
import org.springframework.context.annotation.Bean;
import org.springframework.context.annotation.Configuration;
import org.springframework.context.annotation.Import;
import org.springframework.context.annotation.Primary;
import org.springframework.test.context.junit4.SpringRunner;
import java.util.List;
import java.util.stream.Collectors;
import java.util.stream.Stream;
import static org.mockito.ArgumentMatchers.*;
import static org.mockito.Mockito.when;
@RunWith(SpringRunner.class)
@SpringBootTest(classes = Application.class, webEnvironment = SpringBootTest.WebEnvironment.RANDOM_PORT)
@Import(RedactionIntegrationTest.RedactionIntegrationTestConfiguration.class)
public class DictionaryServiceTest {
@MockBean
protected KieContainer kieContainer;
@MockBean
protected DictionaryClient dictionaryClient;
@Autowired
protected DictionaryService dictionaryService;
@Configuration
@EnableAutoConfiguration(exclude = {RabbitAutoConfiguration.class, StorageAutoConfiguration.class})
public static class RedactionIntegrationTestConfiguration {
@Bean
@Primary
public StorageService inmemoryStorage() {
return new FileSystemBackedStorageService();
}
}
@Test
public void testDictionaryServiceConsistency() {
when(dictionaryClient.getVersion(anyString())).thenReturn(0L);
when(dictionaryClient.getColors(anyString())).thenReturn(new Colors("dossierTemplateId", "#cccccc",
"#cccccc", "#cccccc", "#cccccc", "#cccccc", "#cccccc",
"#cccccc", "#cccccc", "#cccccc", "#cccccc"));
var type1 = new Type();
type1.setType("type1");
type1.setId("type1");
type1.setVersion(1L);
type1.setHexColor("#cccccc");
type1.setHasDictionary(true);
type1.setEntries(Stream.of("a", "b", "c").map(t -> new DictionaryEntry(1, t, 1L, false, "type1")).collect(Collectors.toList()));
var type2 = new Type();
type2.setType("type2");
type2.setId("type2");
type2.setVersion(1L);
type2.setHexColor("#cccccc");
type2.setHasDictionary(true);
type2.setEntries(Stream.of("d", "e", "f").map(t -> new DictionaryEntry(1, t, 1L, false, "type2")).collect(Collectors.toList()));
var type1Updated = new Type();
type1Updated.setType("type1");
type1Updated.setId("type1");
type1Updated.setVersion(2L);
type1Updated.setHexColor("#cccccc");
type1Updated.setHasDictionary(true);
type1Updated.setEntries(Stream.of("z", "q", "x").map(t -> new DictionaryEntry(1, t, 2L, false, "type1")).collect(Collectors.toList()));
when(dictionaryClient.getAllTypesForDossierTemplate(anyString(), anyBoolean())).thenReturn(List.of(type1, type2));
when(dictionaryClient.getDictionaryForType("type1", null)).thenReturn(type1);
when(dictionaryClient.getDictionaryForType("type2", null)).thenReturn(type2);
when(dictionaryClient.getDictionaryForType("type1", 0L)).thenReturn(type1);
when(dictionaryClient.getDictionaryForType("type2", 0L)).thenReturn(type2);
dictionaryService.updateDictionary("dossierTemplateId", null);
var increments = dictionaryService.getDictionaryIncrements("dossierTemplateId",
DictionaryVersion.builder().dossierTemplateVersion(0L).build(), null);
when(dictionaryClient.getVersion(any())).thenReturn(1L);
when(dictionaryClient.getAllTypesForDossierTemplate(anyString(), anyBoolean())).thenReturn(List.of(type1Updated));
when(dictionaryClient.getDictionaryForType("type1", 1L)).thenReturn(type1Updated);
dictionaryService.updateDictionary("dossierTemplateId", null);
var updatedIncrements = dictionaryService.getDictionaryIncrements("dossierTemplateId",
DictionaryVersion.builder().dossierTemplateVersion(0L).build(), null);
}
}
@@ -10,15 +10,15 @@ import org.springframework.core.io.InputStreamResource;
import java.io.File;
import java.io.FileInputStream;
import java.io.FileOutputStream;
import java.util.HashMap;
import java.util.Map;
import java.io.InputStream;
import java.util.*;
import java.util.stream.Collectors;
public class FileSystemBackedStorageService extends S3StorageService {
public class FileSystemBackedStorageService implements StorageService{
private final Map<String, File> dataMap = new HashMap<>();
public FileSystemBackedStorageService() {
super(null, null);
}
@SneakyThrows
@@ -33,16 +33,51 @@ public class FileSystemBackedStorageService extends S3StorageService {
}
@Override
public void deleteObject(String objectId) {
dataMap.remove(objectId);
}
@Override
public boolean objectExists(String objectId) {
return dataMap.containsKey(objectId);
}
@Override
public void init() {
}
public List<String> listPaths(){
return new ArrayList<>(dataMap.keySet());
}
public List<String> listFilePaths(){
return dataMap.values().stream().map(File::getAbsolutePath).collect(Collectors.toList());
}
@SneakyThrows
@Override
public void storeObject(String objectId, byte[] data) {
File tempFile = File.createTempFile("test", ".tmp");
File tempFile = File.createTempFile("storage", objectId.replace("/","-"));
IOUtils.write(data, new FileOutputStream(tempFile));
dataMap.put(objectId, tempFile);
}
@Override
@SneakyThrows
public void storeObject(String objectId, InputStream stream) {
File tempFile = File.createTempFile("test", ".tmp");
IOUtils.copy(stream, new FileOutputStream(tempFile));
dataMap.put(objectId, tempFile);
}
public void clearStorage() {
this.dataMap.forEach((k, v) -> {
v.delete();
@@ -1,28 +1,35 @@
package com.iqser.red.service.redaction.v1.server;
import static org.assertj.core.api.Assertions.assertThat;
import static org.mockito.Mockito.when;
import java.io.BufferedReader;
import java.io.ByteArrayInputStream;
import java.io.File;
import java.io.FileInputStream;
import java.io.FileOutputStream;
import java.io.IOException;
import java.io.InputStream;
import java.io.InputStreamReader;
import java.net.URL;
import java.nio.charset.StandardCharsets;
import java.time.OffsetDateTime;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.UUID;
import java.util.stream.Collectors;
import com.amazonaws.services.s3.AmazonS3;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.AnnotationStatus;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.Comment;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactions;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.Rectangle;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.*;
import com.iqser.red.service.persistence.service.v1.api.model.common.JSONPrimitive;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.configuration.Colors;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.dossier.file.FileType;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.type.DictionaryEntry;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.type.Type;
import com.iqser.red.service.redaction.v1.model.*;
import com.iqser.red.service.redaction.v1.server.annotate.AnnotateRequest;
import com.iqser.red.service.redaction.v1.server.annotate.AnnotateResponse;
import com.iqser.red.service.redaction.v1.server.annotate.AnnotationService;
import com.iqser.red.service.redaction.v1.server.classification.model.SectionText;
import com.iqser.red.service.redaction.v1.server.client.DictionaryClient;
import com.iqser.red.service.redaction.v1.server.client.LegalBasisClient;
import com.iqser.red.service.redaction.v1.server.client.RulesClient;
import com.iqser.red.service.redaction.v1.server.controller.RedactionController;
import com.iqser.red.service.redaction.v1.server.redaction.service.AnalyzeService;
import com.iqser.red.service.redaction.v1.server.redaction.service.ManualRedactionSurroundingTextService;
import com.iqser.red.service.redaction.v1.server.redaction.utils.OsUtils;
import com.iqser.red.service.redaction.v1.server.redaction.utils.ResourceLoader;
import com.iqser.red.service.redaction.v1.server.redaction.utils.TextNormalizationUtilities;
import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
import com.iqser.red.storage.commons.StorageAutoConfiguration;
import com.iqser.red.storage.commons.service.StorageService;
import lombok.SneakyThrows;
import org.apache.commons.io.IOUtils;
import org.junit.After;
import org.junit.Before;
@@ -47,48 +54,15 @@ import org.springframework.context.annotation.Primary;
import org.springframework.core.io.ClassPathResource;
import org.springframework.test.context.junit4.SpringRunner;
import com.amazonaws.services.s3.AmazonS3;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.AnnotationStatus;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.Comment;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactions;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.Rectangle;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.IdRemoval;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.ManualForceRedaction;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.ManualImageRecategorization;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.ManualLegalBasisChange;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.ManualRedactionEntry;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.ManualResizeRedaction;
import com.iqser.red.service.persistence.service.v1.api.model.common.JSONPrimitive;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.configuration.Colors;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.dossier.file.FileType;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.type.DictionaryEntry;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.type.Type;
import com.iqser.red.service.redaction.v1.model.AnalyzeRequest;
import com.iqser.red.service.redaction.v1.model.AnalyzeResult;
import com.iqser.red.service.redaction.v1.model.AnnotateRequest;
import com.iqser.red.service.redaction.v1.model.AnnotateResponse;
import com.iqser.red.service.redaction.v1.model.FileAttribute;
import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
import com.iqser.red.service.redaction.v1.model.RedactionRequest;
import com.iqser.red.service.redaction.v1.model.RedactionResult;
import com.iqser.red.service.redaction.v1.model.StructureAnalyzeRequest;
import com.iqser.red.service.redaction.v1.server.classification.model.SectionText;
import com.iqser.red.service.redaction.v1.server.client.DictionaryClient;
import com.iqser.red.service.redaction.v1.server.client.LegalBasisClient;
import com.iqser.red.service.redaction.v1.server.client.RulesClient;
import com.iqser.red.service.redaction.v1.server.controller.RedactionController;
import com.iqser.red.service.redaction.v1.server.memory.MemoryStats;
import com.iqser.red.service.redaction.v1.server.redaction.service.AnalyzeService;
import com.iqser.red.service.redaction.v1.server.redaction.service.ManualRedactionSurroundingTextService;
import com.iqser.red.service.redaction.v1.server.redaction.utils.OsUtils;
import com.iqser.red.service.redaction.v1.server.redaction.utils.ResourceLoader;
import com.iqser.red.service.redaction.v1.server.redaction.utils.TextNormalizationUtilities;
import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
import com.iqser.red.storage.commons.StorageAutoConfiguration;
import com.iqser.red.storage.commons.service.StorageService;
import java.io.*;
import java.net.URL;
import java.nio.charset.StandardCharsets;
import java.time.OffsetDateTime;
import java.util.*;
import java.util.stream.Collectors;
import lombok.SneakyThrows;
import static org.assertj.core.api.Assertions.assertThat;
import static org.mockito.Mockito.when;
@RunWith(SpringRunner.class)
@SpringBootTest(classes = Application.class, webEnvironment = SpringBootTest.WebEnvironment.RANDOM_PORT)
@@ -114,17 +88,14 @@ public class RedactionIntegrationTest {
private static final String OCR = "ocr";
private static final String DOSSIER_REDACTIONS = "dossier_redactions";
private static final String IMPORTED_REDACTION = "imported_redaction";
private static final String RECOMMENDATION_AUTHOR = "recommendation_CBI_author";
private static final String RECOMMENDATION_ADDRESS = "recommendation_CBI_address";
private static final String FALSE_POSITIVE = "false_positive";
private static final String PII = "PII";
@Autowired
private RedactionController redactionController;
@Autowired
private AnnotationService annotationService;
@Autowired
private AnalyzeService analyzeService;
@@ -157,6 +128,8 @@ public class RedactionIntegrationTest {
private final Map<String, List<String>> dictionary = new HashMap<>();
private final Map<String, List<String>> dossierDictionary = new HashMap<>();
private final Map<String, List<String>> falsePositive = new HashMap<>();
private final Map<String, List<String>> falseRecommendation = new HashMap<>();
private final Map<String, String> typeColorMap = new HashMap<>();
private final Map<String, Boolean> hintTypeMap = new HashMap<>();
private final Map<String, Boolean> caseInSensitiveMap = new HashMap<>();
@@ -220,10 +193,10 @@ public class RedactionIntegrationTest {
loadTypeForTest();
loadNerForTest();
when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(0L);
when(dictionaryClient.getAllTypesForDossierTemplate(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getTypeResponse());
when(dictionaryClient.getAllTypesForDossierTemplate(TEST_DOSSIER_TEMPLATE_ID, false)).thenReturn(getTypeResponse());
when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(0L);
when(dictionaryClient.getAllTypesForDossier(TEST_DOSSIER_ID)).thenReturn(List.of(Type.builder()
when(dictionaryClient.getAllTypesForDossier(TEST_DOSSIER_ID, false)).thenReturn(List.of(Type.builder()
.id(DOSSIER_REDACTIONS + ":" + TEST_DOSSIER_TEMPLATE_ID)
.type(DOSSIER_REDACTIONS)
.dossierTemplateId(TEST_DOSSIER_ID)
@@ -234,37 +207,41 @@ public class RedactionIntegrationTest {
.rank(rankTypeMap.get(DOSSIER_REDACTIONS))
.build()));
when(dictionaryClient.getDictionaryForType(VERTEBRATE + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(VERTEBRATE, false));
when(dictionaryClient.getDictionaryForType(ADDRESS + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(ADDRESS, false));
when(dictionaryClient.getDictionaryForType(AUTHOR + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(AUTHOR, false));
when(dictionaryClient.getDictionaryForType(SPONSOR + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(SPONSOR, false));
when(dictionaryClient.getDictionaryForType(NO_REDACTION_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(NO_REDACTION_INDICATOR, false));
when(dictionaryClient.getDictionaryForType(REDACTION_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(REDACTION_INDICATOR, false));
when(dictionaryClient.getDictionaryForType(HINT_ONLY + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(HINT_ONLY, false));
when(dictionaryClient.getDictionaryForType(MUST_REDACT + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(MUST_REDACT, false));
when(dictionaryClient.getDictionaryForType(PUBLISHED_INFORMATION + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(PUBLISHED_INFORMATION, false));
when(dictionaryClient.getDictionaryForType(TEST_METHOD + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(TEST_METHOD, false));
when(dictionaryClient.getDictionaryForType(PII + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(PII, false));
when(dictionaryClient.getDictionaryForType(RECOMMENDATION_AUTHOR + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(RECOMMENDATION_AUTHOR, false));
when(dictionaryClient.getDictionaryForType(RECOMMENDATION_ADDRESS + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(RECOMMENDATION_ADDRESS, false));
when(dictionaryClient.getDictionaryForType(FALSE_POSITIVE + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(FALSE_POSITIVE, false));
when(dictionaryClient.getDictionaryForType(PURITY + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(PURITY, false));
when(dictionaryClient.getDictionaryForType(IMAGE + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(IMAGE, false));
when(dictionaryClient.getDictionaryForType(OCR + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(OCR, false));
when(dictionaryClient.getDictionaryForType(LOGO + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(LOGO, false));
when(dictionaryClient.getDictionaryForType(SIGNATURE + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(SIGNATURE, false));
when(dictionaryClient.getDictionaryForType(FORMULA + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(FORMULA, false));
when(dictionaryClient.getDictionaryForType(DOSSIER_REDACTIONS + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(DOSSIER_REDACTIONS, true));
when(dictionaryClient.getDictionaryForType(IMPORTED_REDACTION + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(IMPORTED_REDACTION, true));
mockDictionaryCalls(null);
mockDictionaryCalls(0L);
when(dictionaryClient.getColors(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(colors);
}
private void mockDictionaryCalls(Long version){
when(dictionaryClient.getDictionaryForType(VERTEBRATE + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).thenReturn(getDictionaryResponse(VERTEBRATE, false));
when(dictionaryClient.getDictionaryForType(ADDRESS + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).thenReturn(getDictionaryResponse(ADDRESS, false));
when(dictionaryClient.getDictionaryForType(AUTHOR + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).thenReturn(getDictionaryResponse(AUTHOR, false));
when(dictionaryClient.getDictionaryForType(SPONSOR + ":" + TEST_DOSSIER_TEMPLATE_ID,version)).thenReturn(getDictionaryResponse(SPONSOR, false));
when(dictionaryClient.getDictionaryForType(NO_REDACTION_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).thenReturn(getDictionaryResponse(NO_REDACTION_INDICATOR, false));
when(dictionaryClient.getDictionaryForType(REDACTION_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).thenReturn(getDictionaryResponse(REDACTION_INDICATOR, false));
when(dictionaryClient.getDictionaryForType(HINT_ONLY + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).thenReturn(getDictionaryResponse(HINT_ONLY, false));
when(dictionaryClient.getDictionaryForType(MUST_REDACT + ":" + TEST_DOSSIER_TEMPLATE_ID,version)).thenReturn(getDictionaryResponse(MUST_REDACT, false));
when(dictionaryClient.getDictionaryForType(PUBLISHED_INFORMATION + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).thenReturn(getDictionaryResponse(PUBLISHED_INFORMATION, false));
when(dictionaryClient.getDictionaryForType(TEST_METHOD + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).thenReturn(getDictionaryResponse(TEST_METHOD, false));
when(dictionaryClient.getDictionaryForType(PII + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).thenReturn(getDictionaryResponse(PII, false));
when(dictionaryClient.getDictionaryForType(PURITY + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).thenReturn(getDictionaryResponse(PURITY, false));
when(dictionaryClient.getDictionaryForType(IMAGE + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).thenReturn(getDictionaryResponse(IMAGE, false));
when(dictionaryClient.getDictionaryForType(OCR + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).thenReturn(getDictionaryResponse(OCR, false));
when(dictionaryClient.getDictionaryForType(LOGO + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).thenReturn(getDictionaryResponse(LOGO, false));
when(dictionaryClient.getDictionaryForType(SIGNATURE + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).thenReturn(getDictionaryResponse(SIGNATURE, false));
when(dictionaryClient.getDictionaryForType(FORMULA + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).thenReturn(getDictionaryResponse(FORMULA, false));
when(dictionaryClient.getDictionaryForType(DOSSIER_REDACTIONS + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).thenReturn(getDictionaryResponse(DOSSIER_REDACTIONS, true));
when(dictionaryClient.getDictionaryForType(IMPORTED_REDACTION + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).thenReturn(getDictionaryResponse(IMPORTED_REDACTION, true));
}
@Test
public void test270Rotated() {
AnalyzeRequest request = prepareStorage("files/Minimal Examples/270Rotated.pdf");
MemoryStats.printMemoryStats();
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
AnalyzeResult result = analyzeService.analyze(request);
assertThat(result).isNotNull();
@@ -276,7 +253,6 @@ public class RedactionIntegrationTest {
public void testLargeScannedFileOOM() {
AnalyzeRequest request = prepareStorage("scanned/VV-377031.pdf");
MemoryStats.printMemoryStats();
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
AnalyzeResult result = analyzeService.analyze(request);
assertThat(result).isNotNull();
@@ -306,7 +282,7 @@ public class RedactionIntegrationTest {
dictionary.get(AUTHOR).add("Drinking water");
when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(1L);
AnnotateResponse annotateResponse = redactionController.annotate(AnnotateRequest.builder()
AnnotateResponse annotateResponse = annotationService.annotate(AnnotateRequest.builder()
.dossierId(TEST_DOSSIER_ID)
.fileId(TEST_FILE_ID)
.build());
@@ -330,6 +306,8 @@ public class RedactionIntegrationTest {
@Test
public void redactionExpansionOverlap() throws IOException {
// F. Lastname, J. Doe, M. Mustermann
// Lastname M., Doe J., Mustermann M.
ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/ExpansionTest.pdf");
AnalyzeRequest request = prepareStorage(pdfFileResource.getInputStream());
@@ -348,6 +326,7 @@ public class RedactionIntegrationTest {
@Test
@Ignore
@SneakyThrows
public void testIgnoreHint() {
@@ -512,16 +491,13 @@ public class RedactionIntegrationTest {
deleted.add("David Chubb");
deleted.add("mouse");
dictionary.get(FALSE_POSITIVE).add("David Chubb");
reanlysisVersions.put("David Chubb", 3L);
reanlysisVersions.put("mouse", 3L);
when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(3L);
when(dictionaryClient.getDictionaryForType(VERTEBRATE)).thenReturn(getDictionaryResponse(VERTEBRATE, false));
when(dictionaryClient.getDictionaryForType(VERTEBRATE, null)).thenReturn(getDictionaryResponse(VERTEBRATE, false));
when(dictionaryClient.getDictionaryForType(FALSE_POSITIVE)).thenReturn(getDictionaryResponse(FALSE_POSITIVE, false));
start = System.currentTimeMillis();
@@ -543,7 +519,7 @@ public class RedactionIntegrationTest {
end = System.currentTimeMillis();
System.out.println("reanalysis analysis duration: " + (end - start));
AnnotateResponse annotateResponse = redactionController.annotate(AnnotateRequest.builder()
AnnotateResponse annotateResponse = annotationService.annotate(AnnotateRequest.builder()
.dossierId(TEST_DOSSIER_ID)
.fileId(TEST_FILE_ID)
.build());
@@ -557,7 +533,7 @@ public class RedactionIntegrationTest {
when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(4L);
when(dictionaryClient.getDictionaryForType(VERTEBRATE)).thenReturn(getDictionaryResponse(VERTEBRATE, false));
when(dictionaryClient.getDictionaryForType(VERTEBRATE, null)).thenReturn(getDictionaryResponse(VERTEBRATE, false));
analyzeService.reanalyze(request);
@@ -582,17 +558,18 @@ public class RedactionIntegrationTest {
dictionary.get(AUTHOR).add("report");
reanlysisVersions.put("report", 2L);
when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(2L);
when(dictionaryClient.getDictionaryForType(AUTHOR + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(AUTHOR, false));
mockDictionaryCalls(0L);
analyzeService.reanalyze(request);
dictionary.get(AUTHOR).add("assessment report");
reanlysisVersions.put("assessment report", 3L);
when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(3L);
when(dictionaryClient.getDictionaryForType(AUTHOR + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(AUTHOR, false));
mockDictionaryCalls(2L);
analyzeService.reanalyze(request);
when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(3L);
when(dictionaryClient.getDictionaryForType(AUTHOR + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(AUTHOR, false));
mockDictionaryCalls(3L);
analyzeService.reanalyze(request);
var redactionLog = redactionStorageService.getRedactionLog(TEST_DOSSIER_ID, TEST_FILE_ID);
@@ -606,7 +583,7 @@ public class RedactionIntegrationTest {
assertThat(changes.size()).isEqualTo(2);
AnnotateResponse annotateResponse = redactionController.annotate(AnnotateRequest.builder()
AnnotateResponse annotateResponse = annotationService.annotate(AnnotateRequest.builder()
.dossierId(TEST_DOSSIER_ID)
.fileId(TEST_FILE_ID)
.build());
@@ -676,6 +653,7 @@ public class RedactionIntegrationTest {
dictionary.get(AUTHOR).add("properties");
reanlysisVersions.put("properties", 1L);
mockDictionaryCalls(0L);
dictionary.get(AUTHOR).add("physical");
reanlysisVersions.put("physical", 2L);
@@ -683,16 +661,14 @@ public class RedactionIntegrationTest {
deleted.add("David Chubb");
deleted.add("mouse");
dictionary.get(FALSE_POSITIVE).add("David Chubb");
reanlysisVersions.put("David Chubb", 3L);
reanlysisVersions.put("mouse", 3L);
when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(3L);
when(dictionaryClient.getDictionaryForType(VERTEBRATE)).thenReturn(getDictionaryResponse(VERTEBRATE, false));
when(dictionaryClient.getDictionaryForType(VERTEBRATE, null)).thenReturn(getDictionaryResponse(VERTEBRATE, false));
when(dictionaryClient.getDictionaryForType(FALSE_POSITIVE)).thenReturn(getDictionaryResponse(FALSE_POSITIVE, false));
start = System.currentTimeMillis();
@@ -714,7 +690,7 @@ public class RedactionIntegrationTest {
end = System.currentTimeMillis();
System.out.println("reanalysis analysis duration: " + (end - start));
AnnotateResponse annotateResponse = redactionController.annotate(AnnotateRequest.builder()
AnnotateResponse annotateResponse = annotationService.annotate(AnnotateRequest.builder()
.dossierId(TEST_DOSSIER_ID)
.fileId(TEST_FILE_ID)
.build());
@@ -725,10 +701,11 @@ public class RedactionIntegrationTest {
deleted.remove("mouse");
reanlysisVersions.put("mouse", 4L);
mockDictionaryCalls(3L);
when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(4L);
when(dictionaryClient.getDictionaryForType(VERTEBRATE)).thenReturn(getDictionaryResponse(VERTEBRATE, false));
when(dictionaryClient.getDictionaryForType(VERTEBRATE, null)).thenReturn(getDictionaryResponse(VERTEBRATE, false));
analyzeService.reanalyze(request);
@@ -748,7 +725,7 @@ public class RedactionIntegrationTest {
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
AnalyzeResult result = analyzeService.analyze(request);
AnnotateResponse annotateResponse = redactionController.annotate(AnnotateRequest.builder()
AnnotateResponse annotateResponse = annotationService.annotate(AnnotateRequest.builder()
.dossierId(TEST_DOSSIER_ID)
.fileId(TEST_FILE_ID)
.build());
@@ -838,7 +815,7 @@ public class RedactionIntegrationTest {
var redactionLog = redactionStorageService.getRedactionLog(TEST_DOSSIER_ID, TEST_FILE_ID);
AnnotateResponse annotateResponse = redactionController.annotate(AnnotateRequest.builder()
AnnotateResponse annotateResponse = annotationService.annotate(AnnotateRequest.builder()
.dossierId(TEST_DOSSIER_ID)
.fileId(TEST_FILE_ID)
.build());
@@ -972,7 +949,7 @@ public class RedactionIntegrationTest {
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
AnalyzeResult result = analyzeService.analyze(request);
AnnotateResponse annotateResponse = redactionController.annotate(AnnotateRequest.builder()
AnnotateResponse annotateResponse = annotationService.annotate(AnnotateRequest.builder()
.dossierId(TEST_DOSSIER_ID)
.fileId(TEST_FILE_ID)
.build());
@@ -988,6 +965,7 @@ public class RedactionIntegrationTest {
@Test
@Ignore
public void resizeRedactionTest() throws IOException {
ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Single Table.pdf");
@@ -1103,7 +1081,7 @@ public class RedactionIntegrationTest {
analyzeService.reanalyze(request);
AnnotateResponse annotateResponse = redactionController.annotate(AnnotateRequest.builder()
AnnotateResponse annotateResponse = annotationService.annotate(AnnotateRequest.builder()
.dossierId(TEST_DOSSIER_ID)
.fileId(TEST_FILE_ID)
.dossierTemplateId(TEST_DOSSIER_TEMPLATE_ID)
@@ -1127,7 +1105,7 @@ public class RedactionIntegrationTest {
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
AnalyzeResult result = analyzeService.analyze(request);
AnnotateResponse annotateResponse = redactionController.annotate(AnnotateRequest.builder()
AnnotateResponse annotateResponse = annotationService.annotate(AnnotateRequest.builder()
.dossierId(TEST_DOSSIER_ID)
.fileId(TEST_FILE_ID)
.build());
@@ -1143,6 +1121,7 @@ public class RedactionIntegrationTest {
@Test
@Ignore
public void testManualSurroundingText() throws IOException {
ClassPathResource pdfFileResource = new ClassPathResource("files/new/S4.pdf");
@@ -1203,7 +1182,7 @@ public class RedactionIntegrationTest {
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
AnalyzeResult result = analyzeService.analyze(request);
AnnotateResponse annotateResponse = redactionController.annotate(AnnotateRequest.builder()
AnnotateResponse annotateResponse = annotationService.annotate(AnnotateRequest.builder()
.dossierId(TEST_DOSSIER_ID)
.dossierTemplateId(TEST_DOSSIER_TEMPLATE_ID)
.fileId(TEST_FILE_ID)
@@ -1280,21 +1259,6 @@ public class RedactionIntegrationTest {
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(RECOMMENDATION_AUTHOR, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/recommendation_CBI_author.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(RECOMMENDATION_ADDRESS, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/recommendation_CBI_address.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(FALSE_POSITIVE, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/false_positive.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dictionary.computeIfAbsent(PURITY, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/purity.txt")
.stream()
@@ -1331,6 +1295,13 @@ public class RedactionIntegrationTest {
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
dossierDictionary.put(IMPORTED_REDACTION, new ArrayList<>());
falsePositive.computeIfAbsent(PII, v -> new ArrayList<>())
.addAll(ResourceLoader.load("dictionaries/PII_false_positive.txt")
.stream()
.map(this::cleanDictionaryEntry)
.collect(Collectors.toSet()));
}
@@ -1384,9 +1355,6 @@ public class RedactionIntegrationTest {
typeColorMap.put(PUBLISHED_INFORMATION, "#85ebff");
typeColorMap.put(TEST_METHOD, "#91fae8");
typeColorMap.put(PII, "#66ccff");
typeColorMap.put(RECOMMENDATION_AUTHOR, "#8df06c");
typeColorMap.put(RECOMMENDATION_ADDRESS, "#8df06c");
typeColorMap.put(FALSE_POSITIVE, "#ffffff");
typeColorMap.put(PURITY, "#ffe187");
typeColorMap.put(IMAGE, "#fcc5fb");
typeColorMap.put(OCR, "#fcc5fb");
@@ -1406,9 +1374,6 @@ public class RedactionIntegrationTest {
hintTypeMap.put(PUBLISHED_INFORMATION, true);
hintTypeMap.put(TEST_METHOD, true);
hintTypeMap.put(PII, false);
hintTypeMap.put(RECOMMENDATION_AUTHOR, false);
hintTypeMap.put(RECOMMENDATION_ADDRESS, false);
hintTypeMap.put(FALSE_POSITIVE, true);
hintTypeMap.put(PURITY, false);
hintTypeMap.put(IMAGE, true);
hintTypeMap.put(OCR, true);
@@ -1429,9 +1394,6 @@ public class RedactionIntegrationTest {
caseInSensitiveMap.put(PUBLISHED_INFORMATION, true);
caseInSensitiveMap.put(TEST_METHOD, false);
caseInSensitiveMap.put(PII, false);
caseInSensitiveMap.put(RECOMMENDATION_AUTHOR, false);
caseInSensitiveMap.put(RECOMMENDATION_ADDRESS, false);
caseInSensitiveMap.put(FALSE_POSITIVE, false);
caseInSensitiveMap.put(PURITY, false);
caseInSensitiveMap.put(IMAGE, true);
caseInSensitiveMap.put(OCR, true);
@@ -1452,9 +1414,6 @@ public class RedactionIntegrationTest {
recommendationTypeMap.put(PUBLISHED_INFORMATION, false);
recommendationTypeMap.put(TEST_METHOD, false);
recommendationTypeMap.put(PII, false);
recommendationTypeMap.put(RECOMMENDATION_AUTHOR, true);
recommendationTypeMap.put(RECOMMENDATION_ADDRESS, true);
recommendationTypeMap.put(FALSE_POSITIVE, false);
recommendationTypeMap.put(PURITY, false);
recommendationTypeMap.put(IMAGE, false);
recommendationTypeMap.put(OCR, false);
@@ -1464,7 +1423,6 @@ public class RedactionIntegrationTest {
recommendationTypeMap.put(DOSSIER_REDACTIONS, false);
recommendationTypeMap.put(IMPORTED_REDACTION, false);
rankTypeMap.put(FALSE_POSITIVE, 160);
rankTypeMap.put(PURITY, 155);
rankTypeMap.put(PII, 150);
rankTypeMap.put(ADDRESS, 140);
@@ -1477,8 +1435,6 @@ public class RedactionIntegrationTest {
rankTypeMap.put(PUBLISHED_INFORMATION, 70);
rankTypeMap.put(TEST_METHOD, 60);
rankTypeMap.put(HINT_ONLY, 50);
rankTypeMap.put(RECOMMENDATION_AUTHOR, 40);
rankTypeMap.put(RECOMMENDATION_ADDRESS, 30);
rankTypeMap.put(IMAGE, 30);
rankTypeMap.put(OCR, 29);
rankTypeMap.put(LOGO, 28);
@@ -1528,6 +1484,8 @@ public class RedactionIntegrationTest {
.id(type + ":" + TEST_DOSSIER_TEMPLATE_ID)
.hexColor(typeColorMap.get(type))
.entries(isDossierDictionary ? toDictionaryEntry(dossierDictionary.get(type)) : toDictionaryEntry(dictionary.get(type)))
.falsePositiveEntries(falsePositive.containsKey(type) ? toDictionaryEntry(falsePositive.get(type)) : new ArrayList<>())
.falseRecommendationEntries(falseRecommendation.containsKey(type) ? toDictionaryEntry(falseRecommendation.get(type)) : new ArrayList<>())
.isHint(hintTypeMap.get(type))
.isCaseInsensitive(caseInSensitiveMap.get(type))
.isRecommendation(recommendationTypeMap.get(type))
@@ -1571,7 +1529,7 @@ public class RedactionIntegrationTest {
var redactionLog = redactionStorageService.getRedactionLog(TEST_DOSSIER_ID, TEST_FILE_ID);
AnnotateResponse annotateResponse = redactionController.annotate(AnnotateRequest.builder()
AnnotateResponse annotateResponse = annotationService.annotate(AnnotateRequest.builder()
.dossierId(TEST_DOSSIER_ID)
.fileId(TEST_FILE_ID)
.build());
@@ -1581,6 +1539,44 @@ public class RedactionIntegrationTest {
}
}
@Test
public void testExpandByPrefixRegEx() throws IOException {
assertThat(dictionary.get(AUTHOR).contains("Robinson"));
assertThat(! dictionary.get(AUTHOR).contains("Mrs. Robinson"));
assertThat(dictionary.get(AUTHOR).contains("Bojangles"));
assertThat(! dictionary.get(AUTHOR).contains("Mr. Bojangles"));
assertThat(dictionary.get(AUTHOR).contains("Tambourine Man"));
assertThat(! dictionary.get(AUTHOR).contains("Mr. Tambourine Man"));
String fileName = "files/mr-mrs.pdf";
String outputFileName = OsUtils.getTemporaryDirectory() + "/Annotated.pdf";
ClassPathResource pdfFileResource = new ClassPathResource(fileName);
AnalyzeRequest request = prepareStorage(pdfFileResource.getInputStream());
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
analyzeService.analyze(request);
AnnotateResponse annotateResponse = annotationService.annotate(AnnotateRequest.builder()
.dossierId(TEST_DOSSIER_ID)
.fileId(TEST_FILE_ID)
.build());
try (FileOutputStream fileOutputStream = new FileOutputStream(outputFileName)) {
fileOutputStream.write(annotateResponse.getDocument());
}
var redactionLog = redactionStorageService.getRedactionLog(TEST_DOSSIER_ID, TEST_FILE_ID);
var values = redactionLog.getRedactionLogEntry()
.stream()
.map(RedactionLogEntry::getValue)
.collect(Collectors.toList());
assertThat(values).contains("Mrs. Robinson");
assertThat(values).contains("Mr. Bojangles");
assertThat(values).contains("Mr. Tambourine Man");
}
@SneakyThrows
private AnalyzeRequest prepareStorage(InputStream stream) {
@@ -1,4 +1,4 @@
package com.iqser.red.service.redaction.v1.model;
package com.iqser.red.service.redaction.v1.server.annotate;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactions;
@@ -1,4 +1,4 @@
package com.iqser.red.service.redaction.v1.model;
package com.iqser.red.service.redaction.v1.server.annotate;
import lombok.AllArgsConstructor;
import lombok.Builder;
@@ -1,9 +1,15 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
package com.iqser.red.service.redaction.v1.server.annotate;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.Comment;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.dossier.file.FileType;
import com.iqser.red.service.redaction.v1.model.Rectangle;
import com.iqser.red.service.redaction.v1.model.*;
import com.iqser.red.service.redaction.v1.server.exception.RedactionException;
import com.iqser.red.service.redaction.v1.server.redaction.service.DictionaryService;
import com.iqser.red.service.redaction.v1.server.redaction.service.RedactionLogMergeService;
import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
import lombok.RequiredArgsConstructor;
import org.apache.pdfbox.io.MemoryUsageSetting;
import org.apache.pdfbox.pdmodel.PDDocument;
import org.apache.pdfbox.pdmodel.PDPage;
import org.apache.pdfbox.pdmodel.PDPageContentStream;
@@ -17,6 +23,7 @@ import org.apache.pdfbox.pdmodel.interactive.annotation.PDAnnotationTextMarkup;
import org.springframework.stereotype.Service;
import java.awt.*;
import java.io.ByteArrayOutputStream;
import java.io.IOException;
import java.util.List;
import java.util.*;
@@ -26,8 +33,39 @@ import java.util.stream.Collectors;
@RequiredArgsConstructor
public class AnnotationService {
private final RedactionStorageService redactionStorageService;
private final DictionaryService dictionaryService;
public void annotate(PDDocument document, RedactionLog redactionLog, SectionGrid sectionGrid) throws IOException {
private final RedactionLogMergeService redactionLogMergeService;
public AnnotateResponse annotate(AnnotateRequest annotateRequest) {
var storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(annotateRequest.getDossierId(), annotateRequest.getFileId(), FileType.ORIGIN));
var mergedRedactionLog = redactionLogMergeService.provideRedactionLog(RedactionRequest.builder()
.fileId(annotateRequest.getFileId())
.manualRedactions(annotateRequest.getManualRedactions())
.dossierId(annotateRequest.getDossierId())
.dossierTemplateId(annotateRequest.getDossierTemplateId())
.build());
var sectionsGrid = redactionStorageService.getSectionGrid(annotateRequest.getDossierId(), annotateRequest.getFileId());
try (PDDocument pdDocument = PDDocument.load(storedObjectStream, MemoryUsageSetting.setupTempFileOnly())) {
pdDocument.setAllSecurityToBeRemoved(true);
dictionaryService.updateDictionary(annotateRequest.getDossierTemplateId(), annotateRequest.getDossierId());
annotate(pdDocument, mergedRedactionLog, sectionsGrid);
try (ByteArrayOutputStream byteArrayOutputStream = new ByteArrayOutputStream()) {
pdDocument.save(byteArrayOutputStream);
return AnnotateResponse.builder().document(byteArrayOutputStream.toByteArray()).build();
}
} catch (Exception e) {
throw new RedactionException(e);
}
}
private void annotate(PDDocument document, RedactionLog redactionLog, SectionGrid sectionGrid) throws IOException {
Map<Integer, List<RedactionLogEntry>> redactionLogPerPage = convertRedactionLog(redactionLog);
@@ -86,7 +124,7 @@ public class AnnotationService {
annotations.add(annotation);
if (redactionLogEntry.getComments() != null) {
for (Comment comment : redactionLogEntry.getComments()) {
for (RedactionLogComment comment : redactionLogEntry.getComments()) {
PDAnnotationText txtAnnot = new PDAnnotationText();
txtAnnot.setAnnotationName(String.valueOf(comment.getId()));
txtAnnot.setInReplyTo(annotation); // Reference to highlight annotation
@@ -0,0 +1,87 @@
package com.iqser.red.service.redaction.v1.server.realdata;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.fasterxml.jackson.datatype.jsr310.JavaTimeModule;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.dossier.file.FileType;
import com.iqser.red.service.redaction.v1.model.AnalyzeRequest;
import com.iqser.red.service.redaction.v1.model.MessageType;
import lombok.SneakyThrows;
import lombok.extern.slf4j.Slf4j;
import org.junit.Test;
import org.springframework.core.io.ClassPathResource;
import java.time.OffsetDateTime;
import java.util.List;
import java.util.Set;
@Slf4j
public class AnalyseFileRealDataIntegrationTest extends LiveDataIntegrationTest {
public static final String FILE_NAME = "test-file";
@Test
@SneakyThrows
public void testFile() {
ObjectMapper om = new ObjectMapper();
om.registerModule(new JavaTimeModule());
var file = new ClassPathResource(BASE_DIR + "data/" + FILE_NAME + ".pdf").getInputStream();
redactionStorageService.storeObject("dossierId", "fileId", FileType.ORIGIN, file);
try {
var nerData = new ClassPathResource(BASE_DIR + "data/" + FILE_NAME + ".ner.json").getInputStream();
redactionStorageService.storeObject("dossierId", "fileId", FileType.NER_ENTITIES, nerData);
} catch (Exception e) {
log.warn("No NER File Provided");
redactionServiceSettings.setNerServiceEnabled(false);
}
AnalyzeRequest ar = AnalyzeRequest.builder()
.fileId("fileId")
.dossierId("dossierId")
.analysisNumber(1)
.dossierTemplateId("dossierTemplateId")
.lastProcessed(OffsetDateTime.now())
.excludedPages(Set.of())
.fileAttributes(List.of())
.build();
try {
var text = new ClassPathResource(BASE_DIR + "data/" + FILE_NAME + ".text.json").getInputStream();
var sectionText = new ClassPathResource(BASE_DIR + "data/" + FILE_NAME + ".section-grid.json").getInputStream();
redactionStorageService.storeObject("dossierId", "fileId", FileType.TEXT, text);
redactionStorageService.storeObject("dossierId", "fileId", FileType.SECTION_GRID, sectionText);
} catch (Exception e) {
log.info("No text file provided, Performing Structure analysis");
ar.setMessageType(MessageType.STRUCTURE_ANALYSE);
String in = om.writeValueAsString(ar);
redactionMessageReceiver.receiveAnalyzeRequest(in, false);
}
try {
var redactionLog = new ClassPathResource(BASE_DIR + "data/" + FILE_NAME + ".redaction-log.json").getInputStream();
} catch (Exception e) {
log.info("No redaction log provided, Performing full analysis");
ar.setMessageType(MessageType.ANALYSE);
String in = om.writeValueAsString(ar);
redactionMessageReceiver.receiveAnalyzeRequest(in, false);
}
simulateIncrement(List.of("Desiree"), "PII", 3L);
ar.setMessageType(MessageType.REANALYSE);
String in = om.writeValueAsString(ar);
redactionMessageReceiver.receiveAnalyzeRequest(in, false);
// var log = redactionStorageService.getRedactionLog("dossierId","fileId");
}
}
@@ -0,0 +1,196 @@
package com.iqser.red.service.redaction.v1.server.realdata;
import com.fasterxml.jackson.core.type.TypeReference;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.iqser.red.service.persistence.service.v1.api.model.common.JSONPrimitive;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.configuration.Colors;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.type.DictionaryEntry;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.type.Type;
import com.iqser.red.service.redaction.v1.server.Application;
import com.iqser.red.service.redaction.v1.server.FileSystemBackedStorageService;
import com.iqser.red.service.redaction.v1.server.client.*;
import com.iqser.red.service.redaction.v1.server.queue.RedactionMessageReceiver;
import com.iqser.red.service.redaction.v1.server.redaction.service.DictionaryService;
import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
import com.iqser.red.storage.commons.StorageAutoConfiguration;
import com.iqser.red.storage.commons.service.StorageService;
import lombok.SneakyThrows;
import org.apache.commons.io.IOUtils;
import org.junit.Before;
import org.junit.Test;
import org.junit.runner.RunWith;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.boot.autoconfigure.EnableAutoConfiguration;
import org.springframework.boot.autoconfigure.amqp.RabbitAutoConfiguration;
import org.springframework.boot.test.context.SpringBootTest;
import org.springframework.boot.test.mock.mockito.MockBean;
import org.springframework.context.annotation.Bean;
import org.springframework.context.annotation.Configuration;
import org.springframework.context.annotation.Import;
import org.springframework.context.annotation.Primary;
import org.springframework.core.io.ClassPathResource;
import org.springframework.core.io.Resource;
import org.springframework.core.io.support.ResourcePatternResolver;
import org.springframework.test.context.junit4.SpringRunner;
import java.util.ArrayList;
import java.util.List;
import java.util.stream.Collectors;
import static org.assertj.core.api.AssertionsForClassTypes.assertThat;
import static org.mockito.ArgumentMatchers.*;
import static org.mockito.Mockito.when;
@RunWith(SpringRunner.class)
@SpringBootTest(classes = Application.class, webEnvironment = SpringBootTest.WebEnvironment.RANDOM_PORT)
@Import(LiveDataIntegrationTest.RedactionIntegrationTestConfiguration.class)
public class LiveDataIntegrationTest {
protected static String BASE_DIR = "performance/";
protected static String EFSA_SANITISATION_GFL_V1 = "dictionaries/EFSA_sanitisation_GFL_v1/";
@MockBean
protected DictionaryClient dictionaryClient;
@MockBean
protected EntityRecognitionClient entityRecognitionClient;
@MockBean
private FileStatusProcessingUpdateClient fileStatusProcessingUpdateClient;
@MockBean
private LegalBasisClient legalBasisClient;
@Autowired
private ResourcePatternResolver resourcePatternResolver;
@MockBean
private RulesClient rulesClient;
@Autowired
protected DictionaryService dictionaryService;
@Autowired
protected RedactionStorageService redactionStorageService;
@Autowired
protected RedactionMessageReceiver redactionMessageReceiver;
@Autowired
protected FileSystemBackedStorageService fileSystemBackedStorageService;
@Autowired
protected RedactionServiceSettings redactionServiceSettings;
private List<Type> types;
@Configuration
@EnableAutoConfiguration(exclude = {RabbitAutoConfiguration.class, StorageAutoConfiguration.class})
public static class RedactionIntegrationTestConfiguration {
@Bean
@Primary
public StorageService inmemoryStorage() {
return new FileSystemBackedStorageService();
}
}
@SneakyThrows
@Before
public void prepareTest() {
when(dictionaryClient.getVersion(anyString())).thenReturn(1L);
when(dictionaryClient.getVersionForDossier(anyString())).thenReturn(1L);
var rules = IOUtils.toString(new ClassPathResource(BASE_DIR + EFSA_SANITISATION_GFL_V1 + "rules.drl").getInputStream());
when(rulesClient.getRules(any())).thenReturn(JSONPrimitive.of(rules));
ObjectMapper objectMapper = new ObjectMapper();
var jsonNode = objectMapper.readTree(new ClassPathResource(BASE_DIR + EFSA_SANITISATION_GFL_V1 + "types.json").getInputStream());
types = objectMapper.treeToValue(jsonNode.get("types"), objectMapper.getTypeFactory().constructType(
new TypeReference<List<Type>>() {
}));
types.forEach(t -> {
t.setId(t.getType());
t.setVersion(0L);
});
when(dictionaryClient.getAllTypesForDossierTemplate(anyString(), anyBoolean())).thenReturn(types);
when(dictionaryClient.getAllTypesForDossier(anyString(), anyBoolean())).thenReturn(new ArrayList<>());
when(dictionaryClient.getColors(anyString())).thenReturn(objectMapper.readValue(new ClassPathResource(BASE_DIR + EFSA_SANITISATION_GFL_V1 + "colors.json").getInputStream(), Colors.class));
when(dictionaryClient.getDictionaryForType(anyString(), nullable(Long.class))).then(answer -> {
String typeName = answer.getArgument(0);
var found = types.stream().filter(t -> t.getType().equalsIgnoreCase(typeName)).findFirst();
if(found.isPresent()) {
var type = types.stream().filter(t -> t.getType().equalsIgnoreCase(typeName)).findFirst().get();
type.setEntries(getEntries(typeName, type.getTypeId()));
return type;
}else{
return null;
}
});
dictionaryService.updateDictionary("dossierTemplateId","dossierId");
}
public void simulateIncrement(List<String> values, String deltaTypeName, long version) {
when(dictionaryClient.getVersion(anyString())).thenReturn(version);
when(dictionaryClient.getVersionForDossier(anyString())).thenReturn(version);
when(dictionaryClient.getDictionaryForType(anyString(), nullable(Long.class))).then(answer -> {
String typeName = answer.getArgument(0);
var found = types.stream().filter(t -> t.getType().equalsIgnoreCase(typeName)).findFirst();
if(found.isPresent()) {
var type = types.stream().filter(t -> t.getType().equalsIgnoreCase(typeName)).findFirst().get();
if (deltaTypeName.equalsIgnoreCase(typeName)) {
type.setEntries(values.stream().map(l -> new DictionaryEntry(0, l, version, false, type.getTypeId())).collect(Collectors.toList()));
} else {
type.setEntries(new ArrayList<>());
}
return type;
}else{
return null;
}
});
}
@Test
public void testUpdateDictionary() {
dictionaryService.updateDictionary("dossierTemplateId", "dossierId");
var dict = dictionaryService.getDeepCopyDictionary("dossierTemplateId", "dossierId");
assertThat(dict.getLocalAccessMap().size()).isEqualTo(12);
}
@SneakyThrows
private List<DictionaryEntry> getEntries(String typeName, String typeId) {
Resource[] dictionaryResources = resourcePatternResolver.getResources("classpath:" + BASE_DIR + EFSA_SANITISATION_GFL_V1 + "dictionaries/**");
for (var resource : dictionaryResources) {
if (resource.getFilename().contains(typeName)) {
List<String> lines = IOUtils.readLines(resource.getInputStream());
return lines.stream().map(l -> new DictionaryEntry(0, l, 0L, false, typeId)).collect(Collectors.toList());
}
}
return new ArrayList<>();
}
}
@@ -9,6 +9,7 @@ import org.junit.Test;
import com.iqser.red.service.redaction.v1.model.Engine;
import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
import com.iqser.red.service.redaction.v1.server.redaction.model.EntityType;
public class EntitySearchUtilsTest {
@@ -16,8 +17,8 @@ public class EntitySearchUtilsTest {
public void testNestedEntitiesRemoval() {
Set<Entity> entities = new HashSet<>();
Entity nested = new Entity("nested", "fake type", 10, 16, "fake headline", 0, false, false, Engine.RULE);
Entity nesting = new Entity("nesting nested", "fake type", 2, 16, "fake headline", 0, false, false, Engine.RULE);
Entity nested = new Entity("nested", "fake type", 10, 16, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
Entity nesting = new Entity("nesting nested", "fake type", 2, 16, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
entities.add(nested);
entities.add(nesting);
EntitySearchUtils.removeEntitiesContainedInLarger(entities);
@@ -39,14 +40,14 @@ public class EntitySearchUtilsTest {
// Arrange
Set<Entity> existingEntities = new HashSet<>();
Entity existingEntity1 = new Entity("Batman", "fake type", 0, 5, "fake headline", 0, false, false, Engine.RULE);
Entity existingEntity2 = new Entity("Superman", "fake type", 10, 17, "fake headline", 0, false, false, Engine.RULE);
Entity existingEntity1 = new Entity("Batman", "fake type", 0, 5, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
Entity existingEntity2 = new Entity("Superman", "fake type", 10, 17, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
existingEntities.add(existingEntity1);
existingEntities.add(existingEntity2);
Set<Entity> foundEntities = new HashSet<>();
Entity foundEntities1 = new Entity("Batman X.", "fake type", 0, 8, "fake headline", 0, false, false, Engine.RULE);
Entity foundEntities2 = new Entity("Superman Y.", "fake type", 10, 20, "fake headline", 0, false, false, Engine.RULE);
Entity foundEntities1 = new Entity("Batman X.", "fake type", 0, 8, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
Entity foundEntities2 = new Entity("Superman Y.", "fake type", 10, 20, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
foundEntities.add(foundEntities1);
foundEntities.add(foundEntities2);
@@ -72,14 +73,14 @@ public class EntitySearchUtilsTest {
// Arrange
Set<Entity> existingEntities = new HashSet<>();
Entity existingEntity1 = new Entity("Batman X.", "fake type", 0, 8, "fake headline", 0, false, false, Engine.RULE);
Entity existingEntity2 = new Entity("Superman", "fake type", 10, 17, "fake headline", 0, false, false, Engine.RULE);
Entity existingEntity1 = new Entity("Batman X.", "fake type", 0, 8, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
Entity existingEntity2 = new Entity("Superman", "fake type", 10, 17, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
existingEntities.add(existingEntity1);
existingEntities.add(existingEntity2);
Set<Entity> foundEntities = new HashSet<>();
Entity foundEntities1 = new Entity("Batman X.", "fake type", 0, 8, "fake headline", 0, false, false, Engine.RULE);
Entity foundEntities2 = new Entity("X. Superman Y.", "fake type", 7, 20, "fake headline", 0, false, false, Engine.RULE);
Entity foundEntities1 = new Entity("Batman X.", "fake type", 0, 8, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
Entity foundEntities2 = new Entity("X. Superman Y.", "fake type", 7, 20, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
foundEntities.add(foundEntities1);
foundEntities.add(foundEntities2);
@@ -104,14 +105,14 @@ public class EntitySearchUtilsTest {
// Arrange
Set<Entity> existingEntities = new HashSet<>();
Entity existingEntity1 = new Entity("Batman X.", "fake type", 0, 8, "fake headline", 0, false, false, Engine.RULE);
Entity existingEntity2 = new Entity("Superman", "fake type", 10, 17, "fake headline", 0, false, false, Engine.RULE);
Entity existingEntity1 = new Entity("Batman X.", "fake type", 0, 8, "fake headline", 0, false, false, Engine.RULE,EntityType.ENTITY);
Entity existingEntity2 = new Entity("Superman", "fake type", 10, 17, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
existingEntities.add(existingEntity1);
existingEntities.add(existingEntity2);
Set<Entity> foundEntities = new HashSet<>();
Entity foundEntities1 = new Entity("Batman X.", "fake type", 0, 8, "fake headline", 0, false, false, Engine.RULE);
Entity foundEntities2 = new Entity("X. Superman", "fake type", 7, 17, "fake headline", 0, false, false, Engine.RULE);
Entity foundEntities1 = new Entity("Batman X.", "fake type", 0, 8, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
Entity foundEntities2 = new Entity("X. Superman", "fake type", 7, 17, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
foundEntities.add(foundEntities1);
foundEntities.add(foundEntities2);
@@ -136,22 +137,25 @@ public class EntitySearchUtilsTest {
// Arrange
Set<Entity> existingEntities = new HashSet<>();
Entity existingEntity1 = new Entity("X. Superman", "fake type", 7, 17, "fake headline", 0, false, false, Engine.RULE);
Entity existingEntity2 = new Entity("Batman", "fake type", 0, 5, "fake headline", 0, false, false, Engine.RULE);
Entity existingEntity1 = new Entity("X. Superman", "fake type", 7, 17, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
Entity existingEntity2 = new Entity("Batman", "fake type", 0, 5, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
existingEntities.add(existingEntity1);
existingEntities.add(existingEntity2);
Set<Entity> foundEntities = new HashSet<>();
Entity foundEntities1 = new Entity("Batman X.", "fake type", 0, 8, "fake headline", 0, false, false, Engine.RULE);
Entity foundEntities2 = new Entity("Superman", "fake type", 10, 17, "fake headline", 0, false, false, Engine.RULE);
Entity foundEntities1 = new Entity("Batman X.", "fake type", 0, 8, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
Entity foundEntities2 = new Entity("Superman", "fake type", 10, 17, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
Entity foundEntities3 = new Entity("Superman Y.", "fake type", 10, 20, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
foundEntities.add(foundEntities1);
foundEntities.add(foundEntities2);
foundEntities.add(foundEntities3);
// Act
Set<Entity> result = EntitySearchUtils.findNonOverlappingMatchEntities(existingEntities, foundEntities);
// Assert
assertThat(result.size()).isEqualTo(0);
assertThat(result.size()).isEqualTo(1);
assertThat(result.contains(foundEntities2));
}
@@ -166,22 +170,27 @@ public class EntitySearchUtilsTest {
// Arrange
Set<Entity> existingEntities = new HashSet<>();
Entity existingEntity1 = new Entity("X. Superman", "fake type", 7, 17, "fake headline", 0, false, false, Engine.RULE);
Entity existingEntity2 = new Entity("Batman", "fake type", 0, 5, "fake headline", 0, false, false, Engine.RULE);
Entity existingEntity1 = new Entity("X. Superman", "fake type", 7, 17, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
Entity existingEntity2 = new Entity("Batman", "fake type", 0, 5, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
existingEntities.add(existingEntity1);
existingEntities.add(existingEntity2);
Set<Entity> foundEntities = new HashSet<>();
Entity foundEntities1 = new Entity("Batman X. Superman", "fake type", 0, 17, "fake headline", 0, false, false, Engine.RULE);
Entity foundEntities2 = new Entity("Superman", "fake type", 10, 17, "fake headline", 0, false, false, Engine.RULE);
foundEntities.add(foundEntities1);
foundEntities.add(foundEntities2);
Entity foundEntitiesOverlap1 = new Entity("Batman X. Superman Y.", "fake type", 0, 17, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
Entity foundEntitiesOverlap2 = new Entity("Superman Y.", "fake type", 10, 20, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
Entity foundEntitiesSubset1 = new Entity("Batman X. Superman", "fake type", 0, 17, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
Entity foundEntitiesSubset2 = new Entity("Superman", "fake type", 10, 17, "fake headline", 0, false, false, Engine.RULE, EntityType.ENTITY);
foundEntities.add(foundEntitiesOverlap1);
foundEntities.add(foundEntitiesOverlap2);
foundEntities.add(foundEntitiesSubset1);
foundEntities.add(foundEntitiesSubset2);
// Act
Set<Entity> result = EntitySearchUtils.findNonOverlappingMatchEntities(existingEntities, foundEntities);
// Assert
assertThat(result.size()).isEqualTo(0);
assertThat(result.size()).isEqualTo(2);
assertThat(result).containsExactlyInAnyOrder(foundEntitiesSubset1, foundEntitiesSubset2);
}
@@ -94,7 +94,7 @@ public class PdfSegmentationServiceTest {
ImageServiceResponse imageServiceResponse = objectMapper.readValue(responseJson.getInputStream(), ImageServiceResponse.class);
Map<Integer, List<PdfImage>> images = new HashMap<>();
imageServiceResponse.getImageMetadata().stream().forEach(imageMetadata -> {
imageServiceResponse.getData().stream().forEach(imageMetadata -> {
images.computeIfAbsent(imageMetadata.getPosition().getPageNumber() ,x -> new ArrayList<>())
.add(new PdfImage(new RedRectangle2D(imageMetadata.getPosition().getX1(), imageMetadata.getPosition().getY1(), imageMetadata.getGeometry().getWidth(), imageMetadata.getGeometry().getHeight()), ImageType.valueOf(imageMetadata.getClassification().getLabel().toUpperCase(Locale.ROOT)), imageMetadata.getPosition().getPageNumber()));
});
@@ -9,6 +9,7 @@ ribbon:
spring:
main:
allow-bean-definition-overriding: true
allow-circular-references: true # FIXME
processing.kafkastreams: false
@@ -8620,4 +8620,6 @@ Doe
M. Mustermann
F. Lastname
Mustermann
Lastname
Lastname
Bojangles
Tambourine Man
@@ -1,239 +0,0 @@
(Parent
ADME - Bioanalyses, Vergèze,
Aeration: Gentle
Andrews mean
Andrews pKi
BASF study code
Billington –
Bond elute
Brown Liquid
Brown Orange
Brown Solid
Brown disco
Brown discoloured
Brown fat
Brown liquid
Brown solid
Buehler (1980),
Buehler (1980).
Buehler 9
Buehler Test.
Buehler assay
Buehler test
Buehler)
Buehler-like :
Calandra lark
Cary, NC,
Chambersas for
Class 4
Class III’
Class III’)
Class method,
Class2 (effectively
ClassMethod) Vischim
Clay =
Cochran-Armitage Test.
Cochran-armitage test.
Dunnett 2
Dunnett's "t''
Dunnett's Test
Dunnett's multiple
Dunnett's t-test
Dunnett's test
Dunnett) **
Dunnett) Dose
Dunnett) Food
Dunnett) Lower
Dunnett, 1964)
Dunnett’s Multiple
Dunnett’s T
Dunnett’s Test)
Dunnett’s adjustment
Dunnett’s multiple
Dunnett’s post
Dunnett’s t-test)
Fine vacuolation
Fine white
Finewhite powder
Fischer 344
Fischer 344)
Fischer F344
Fischer rat
Fischer) Contaminants:
Fischer-344 acceptability
Fischer-344/
Fischer-344/DuCrj acceptability
Fischer344 rats.
Fischer344) :
Fischerrat embryo
Fischer’s exact
Fisher 344
Fisher Exact Test
Fisher Exact test
Fisher exact test
Fisher's Exact
Fisher-344 rat
Fisher344 (F344/
Fisher344 rat
Fisher344 rats
Fisher344 rats.
Fisher344 rats/
Fisher344) group
Fisher’s exact.
Freeman-Tukey transform
Gentle aeration
Grade 2:
Grade 3)
Grade 3:
Green
Green Alga
Green as
Green-, blue-,
GreenAlga, Selenastrum
GreenAlga.. Springborn
Gross External
Gross Necropsy
Gross and
Gross necropsies
Gross necropsy
Gross pathology
Gross pathology:
Hall Farm
Hall Farm)
HallFarm (396
Ham's F12
Ham’s F10
Hand-held
HarlanWinkelmann, Borchem,
Hill International,
Hill Top
Hill criteria
Hill, Bracknell,
HillTop Chamber,
Hillmodel was
Hill’s model
Japanese White
Jerneplaque assay
Kent. Blood
Klimisch score
Litchfield and Wilcoxon
Long term
Long-Term Toxicity
Long-term
Longbw/
Major Macroscopic findings
Major biliary
Major defects
Major deviations
Major fetal
Major metabolic
Major metabolites
Major route
Major treatment-related
Mallard (Anas
Mallard with
Manual-Hand held
Marsh Frog
Marsh harrier
Masonjars (500
Meier formula)
Meier survival
Miles anti-Canine
Miles anti-dog
Netherlands, 2011
Netherlands, published:
Netherlands. Report
Penn State
Porewater:
Rattray study
Read across
Reed Bunting
Reichert-Jung Cryo
RifconGmbH. Oxon
Ritz and
S.P.-U/
San Diego,
Shaw's Farm,
Sprague
Strain JapaneseWhite
Strong morphological
Weight -
Weight 2744
Weight Gain
Weight On
Weight Range
Weight and
Weight and length
Weight at
Weight gain
Weight loss
Weight of
Weight only
Weight range
Weight, age
Weight, feed
Weight-of-evidence approach
Weight:
Weight; Adult
Weight; Whole
WeightGain 0-1
WeightRange:
Weightat dosing:
Weightrange 200-250g.
White (Tif:
White 10
White 3
White Age
White Powder
White Strain
White blood
White cell
White crystalline
White guideline
White guinea-pigs
White hygroscopic
White powder
White solid
White stork
White swan
White to off-white
White wagtail
White, solid
WhitePowder Lot/
Whiteguideline :
Whitehygroscopic solid
Whitepowder Lot/
Whitepowder Stability
Whitesolid Batch
Whiteswan)
Whiteto off-white
Wildlife International specifications
Wildlife Internationalspecifications Water:
Williams E
Williams medium
Williams' medium
WilliamsE medium
Williams’ test
Wilson's method.
Wilson. All foetal
Wilson.All foetal
Wood pigeons
York.
Zeneca dossier);
Zenecadossier); see
green algae
CTL
No details reported
Not given
Not indicated
Not reported
Not reported.
Not stated
Syngenta
Syngenta AG
N/A
No details reported
Not available
Test facility
TBD
David Chubb
@@ -9,10 +9,9 @@ global Section section
//rule "0: Expand CBI Authors with firstname initials"
// when
// Section(matchesType("CBI_author") || matchesType("recommendation_CBI_author"))
// Section(matchesType("CBI_author"))
// then
// section.expandByRegEx("CBI_author", "(,? [A-Z]\\.?( ?[A-Z]\\.?)?( ?[A-Z]\\.?)?\\b\\.?)", false, 1);
// section.expandByRegEx("recommendation_CBI_author", "(,? [A-Z]\\.?( ?[A-Z]\\.?)?( ?[A-Z]\\.?)?\\b\\.?)", false, 1);
// end
@@ -20,22 +19,38 @@ rule "0: Add CBI_author from ai"
when
Section(aiMatchesType("CBI_author"))
then
section.addAiEntities("CBI_author", "recommendation_CBI_author");
section.addAiEntities("CBI_author", "CBI_author");
end
rule "0: Combine ai types CBI_author from ai"
when
Section(aiMatchesType("ORG"))
then
section.combineAiTypes("ORG", "STREET,POSTAL,COUNTRY,CARDINAL,CITY,STATE", 20, "recommendation_CBI_address", 3, false);
section.combineAiTypes("ORG", "STREET,POSTAL,COUNTRY,CARDINAL,CITY,STATE", 20, "CBI_address", 3, false);
end
rule "0: Expand CBI Authors with firstname initials"
when
Section(matchesType("CBI_author") || matchesType("recommendation_CBI_author"))
Section(matchesType("CBI_author"))
then
section.expandByRegEx("CBI_author", "(,? [A-Z]\\.?( ?[A-Z]\\.?)?( ?[A-Z]\\.?)?\\b\\.?)", false, 1, "[^\\s]+");
section.expandByRegEx("recommendation_CBI_author", "(,? [A-Z]\\.?( ?[A-Z]\\.?)?( ?[A-Z]\\.?)?\\b\\.?)", false, 1, "[^\\s]+");
end
rule "0: Expand CBI_author and PII matches with salutation prefix"
when
Section((matchesType("CBI_author") || matchesType("PII")) && (
searchText.contains("Mr")
|| searchText.contains("Mrs")
|| searchText.contains("Ms")
|| searchText.contains("Miss")
|| searchText.contains("Sir")
|| searchText.contains("Madam")
|| searchText.contains("Madame")
|| searchText.contains("Mme")
))
then
section.expandByPrefixRegEx("CBI_author", "\\b(Mrs?|Ms|Miss|Sir|Madame?|Mme)\\s?\\.?\\s*", false, 0);
section.expandByPrefixRegEx("PII", "\\b(Mrs?|Ms|Miss|Sir|Madame?|Mme)\\s?\\.?\\s*", false, 0);
end
@@ -1,7 +1,7 @@
{
"dossierId": "f889853e-4bf8-49a9-aae5-c38605c6ef40",
"fileId": "22ef63e29bb2a27db8497272336f6b32",
"imageMetadata": [
"data": [
{
"classification": {
"probabilities": {

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