Compare commits
| Author | SHA1 | Date | |
|---|---|---|---|
|
|
b80914288b | ||
|
|
df694a90a8 | ||
|
|
49b91955b8 | ||
|
|
04ec3cb7b9 | ||
|
|
fcae77dcd4 | ||
|
|
13e60e05b6 | ||
|
|
90ba3239fc | ||
|
|
6de0346052 | ||
|
|
7b520ee0ab | ||
|
|
bf638dac01 | ||
|
|
9354cbb6bc | ||
|
|
406f5a48cf | ||
|
|
a71ee61e1b | ||
|
|
096544d8e2 | ||
|
|
646f2020a8 | ||
|
|
72a7761dd8 | ||
|
|
c869a624e6 | ||
|
|
3ca37133c6 | ||
|
|
93baf97ce3 | ||
|
|
a0773d16dc | ||
|
|
c4816579c9 | ||
|
|
c9e80e3fa1 | ||
|
|
677d62deca | ||
|
|
5229cd87f6 | ||
|
|
50e137575d | ||
|
|
7303a7579b | ||
|
|
2b4f174bdf |
+3
-8
@@ -7,18 +7,13 @@ include:
|
||||
ref: 'main'
|
||||
file: 'ci-templates/gradle_java.yml'
|
||||
|
||||
deploy:
|
||||
deploy JavaDoc:
|
||||
stage: deploy
|
||||
tags:
|
||||
- dind
|
||||
script:
|
||||
- echo "Building with gradle version ${BUILDVERSION}"
|
||||
- echo "Building JavaDoc with gradle version ${BUILDVERSION}"
|
||||
- gradle -Pversion=${BUILDVERSION} publish
|
||||
- gradle bootBuildImage --publishImage -PbuildbootDockerHostNetwork=true -Pversion=${BUILDVERSION}
|
||||
- echo "BUILDVERSION=$BUILDVERSION" >> version.env
|
||||
artifacts:
|
||||
reports:
|
||||
dotenv: version.env
|
||||
rules:
|
||||
- if: $CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH
|
||||
- if: $CI_COMMIT_BRANCH =~ /^release/
|
||||
@@ -37,4 +32,4 @@ generateJavaDoc:
|
||||
rules:
|
||||
- if: $CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH
|
||||
- if: $CI_COMMIT_BRANCH =~ /^release/
|
||||
- if: $CI_COMMIT_TAG
|
||||
- if: $CI_COMMIT_TAG
|
||||
|
||||
+13
@@ -1,11 +1,15 @@
|
||||
package com.iqser.red.service.redaction.v1.model;
|
||||
|
||||
import java.util.Collections;
|
||||
import java.util.Set;
|
||||
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.ManualRedactions;
|
||||
|
||||
import lombok.AllArgsConstructor;
|
||||
import lombok.Builder;
|
||||
import lombok.Data;
|
||||
import lombok.NoArgsConstructor;
|
||||
import lombok.NonNull;
|
||||
|
||||
@Data
|
||||
@Builder
|
||||
@@ -13,9 +17,18 @@ import lombok.NoArgsConstructor;
|
||||
@AllArgsConstructor
|
||||
public class MigrationRequest {
|
||||
|
||||
@NonNull
|
||||
String dossierTemplateId;
|
||||
@NonNull
|
||||
String dossierId;
|
||||
@NonNull
|
||||
String fileId;
|
||||
|
||||
boolean fileIsApproved;
|
||||
@NonNull
|
||||
ManualRedactions manualRedactions;
|
||||
@NonNull
|
||||
@Builder.Default
|
||||
Set<String> entitiesWithComments = Collections.emptySet();
|
||||
|
||||
}
|
||||
|
||||
@@ -16,7 +16,7 @@ val layoutParserVersion = "0.96.0"
|
||||
val jacksonVersion = "2.15.2"
|
||||
val droolsVersion = "9.44.0.Final"
|
||||
val pdfBoxVersion = "3.0.0"
|
||||
val persistenceServiceVersion = "2.377.0"
|
||||
val persistenceServiceVersion = "2.380.0"
|
||||
val springBootStarterVersion = "3.1.5"
|
||||
|
||||
configurations {
|
||||
|
||||
+2
-1
@@ -206,7 +206,8 @@ public class LegacyRedactionLogMergeService {
|
||||
.withManualRedactionType(ManualRedactionType.RECATEGORIZE)
|
||||
.withChange("type", imageRecategorization.getType())
|
||||
.withChange("section", imageRecategorization.getSection())
|
||||
.withChange("legalBasis", imageRecategorization.getLegalBasis()));
|
||||
.withChange("legalBasis", imageRecategorization.getLegalBasis())
|
||||
.withChange("value", imageRecategorization.getValue()));
|
||||
}
|
||||
|
||||
|
||||
|
||||
+4
-2
@@ -57,7 +57,7 @@ public class MigrationMessageReceiver {
|
||||
|
||||
if (redactionLog.getAnalysisVersion() == 0) {
|
||||
redactionLog = legacyVersion0MigrationService.mergeDuplicateAnnotationIds(redactionLog);
|
||||
} else if (migrationRequest.getManualRedactions() != null) {
|
||||
} else {
|
||||
redactionLog = legacyRedactionLogMergeService.addManualAddEntriesAndRemoveSkippedImported(redactionLog,
|
||||
migrationRequest.getManualRedactions(),
|
||||
migrationRequest.getDossierTemplateId());
|
||||
@@ -67,7 +67,9 @@ public class MigrationMessageReceiver {
|
||||
document,
|
||||
migrationRequest.getDossierTemplateId(),
|
||||
migrationRequest.getManualRedactions(),
|
||||
migrationRequest.getFileId());
|
||||
migrationRequest.getFileId(),
|
||||
migrationRequest.getEntitiesWithComments(),
|
||||
migrationRequest.isFileIsApproved());
|
||||
|
||||
log.info("Storing migrated entityLog and ids to migrate in DB for file {}", migrationRequest.getFileId());
|
||||
redactionStorageService.storeObject(migrationRequest.getDossierId(), migrationRequest.getFileId(), FileType.ENTITY_LOG, migratedEntityLog.getEntityLog());
|
||||
|
||||
+85
-19
@@ -8,6 +8,7 @@ import java.util.LinkedList;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
import java.util.Optional;
|
||||
import java.util.Set;
|
||||
import java.util.function.Function;
|
||||
import java.util.stream.Collectors;
|
||||
import java.util.stream.Stream;
|
||||
@@ -19,7 +20,9 @@ import com.iqser.red.service.persistence.service.v1.api.shared.model.analysislog
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.analysislog.migration.MigratedIds;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.ManualRedactions;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.BaseAnnotation;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.IdRemoval;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.ManualRedactionEntry;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.ManualResizeRedaction;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.redactionlog.Rectangle;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.redactionlog.RedactionLog;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.redactionlog.RedactionLogEntry;
|
||||
@@ -57,7 +60,13 @@ public class RedactionLogToEntityLogMigrationService {
|
||||
ManualChangesApplicationService manualChangesApplicationService;
|
||||
|
||||
|
||||
public MigratedEntityLog migrate(RedactionLog redactionLog, Document document, String dossierTemplateId, ManualRedactions manualRedactions, String fileId) {
|
||||
public MigratedEntityLog migrate(RedactionLog redactionLog,
|
||||
Document document,
|
||||
String dossierTemplateId,
|
||||
ManualRedactions manualRedactions,
|
||||
String fileId,
|
||||
Set<String> entitiesWithComments,
|
||||
boolean fileIsApproved) {
|
||||
|
||||
log.info("Migrating entities for file {}", fileId);
|
||||
List<MigrationEntity> entitiesToMigrate = calculateMigrationEntitiesFromRedactionLog(redactionLog, document, dossierTemplateId, fileId);
|
||||
@@ -66,7 +75,7 @@ public class RedactionLogToEntityLogMigrationService {
|
||||
.collect(new MigratedIdsCollector());
|
||||
|
||||
log.info("applying manual changes to migrated entities for file {}", fileId);
|
||||
applyManualChanges(entitiesToMigrate, manualRedactions);
|
||||
applyLocalProcessedManualChanges(entitiesToMigrate, manualRedactions, fileIsApproved);
|
||||
|
||||
EntityLog entityLog = new EntityLog();
|
||||
entityLog.setAnalysisNumber(redactionLog.getAnalysisNumber());
|
||||
@@ -87,7 +96,7 @@ public class RedactionLogToEntityLogMigrationService {
|
||||
.map(migrationEntity -> migrationEntity.toEntityLogEntry(oldToNewIDMapping))
|
||||
.toList());
|
||||
|
||||
if (getNumberOfApprovedEntries(redactionLog) != entityLog.getEntityLogEntry().size()) {
|
||||
if (getNumberOfApprovedEntries(redactionLog, document.getNumberOfPages()) != entityLog.getEntityLogEntry().size()) {
|
||||
String message = String.format("Not all entities have been found during the migration redactionLog has %d entries and new entityLog %d",
|
||||
redactionLog.getRedactionLogEntry().size(),
|
||||
entityLog.getEntityLogEntry().size());
|
||||
@@ -95,8 +104,14 @@ public class RedactionLogToEntityLogMigrationService {
|
||||
throw new AssertionError(message);
|
||||
}
|
||||
|
||||
Set<String> entitiesWithUnprocessedChanges = manualRedactions.buildAll()
|
||||
.stream()
|
||||
.filter(manualRedaction -> manualRedaction.getProcessedDate() == null)
|
||||
.map(BaseAnnotation::getAnnotationId)
|
||||
.collect(Collectors.toSet());
|
||||
|
||||
MigratedIds idsToMigrateInDb = entitiesToMigrate.stream()
|
||||
.filter(MigrationEntity::hasManualChangesOrComments)
|
||||
.filter(migrationEntity -> migrationEntity.hasManualChangesOrComments(entitiesWithComments, entitiesWithUnprocessedChanges))
|
||||
.filter(m -> !m.getOldId().equals(m.getNewId()))
|
||||
.collect(new MigratedIdsCollector());
|
||||
|
||||
@@ -111,20 +126,29 @@ public class RedactionLogToEntityLogMigrationService {
|
||||
}
|
||||
|
||||
|
||||
private void applyManualChanges(List<MigrationEntity> entitiesToMigrate, ManualRedactions manualRedactions) {
|
||||
private void applyLocalProcessedManualChanges(List<MigrationEntity> entitiesToMigrate, ManualRedactions manualRedactions, boolean fileIsApproved) {
|
||||
|
||||
if (manualRedactions == null) {
|
||||
return;
|
||||
}
|
||||
Map<String, List<BaseAnnotation>> manualChangesPerAnnotationId;
|
||||
|
||||
Map<String, List<BaseAnnotation>> manualChangesPerAnnotationId = Stream.of(manualRedactions.getIdsToRemove(),
|
||||
manualRedactions.getEntriesToAdd(),
|
||||
manualRedactions.getForceRedactions(),
|
||||
manualRedactions.getResizeRedactions(),
|
||||
manualRedactions.getLegalBasisChanges(),
|
||||
manualRedactions.getRecategorizations())
|
||||
.flatMap(Collection::stream)
|
||||
.collect(Collectors.groupingBy(BaseAnnotation::getAnnotationId));
|
||||
if (fileIsApproved) {
|
||||
manualChangesPerAnnotationId = manualRedactions.buildAll()
|
||||
.stream()
|
||||
.filter(manualChange -> (manualChange.getProcessedDate() != null && manualChange.isLocal()) //
|
||||
// unprocessed dict change of type IdRemoval or ManualResize must be applied for approved documents
|
||||
|| (manualChange.getProcessedDate() == null && !manualChange.isLocal() //
|
||||
&& (manualChange instanceof IdRemoval || manualChange instanceof ManualResizeRedaction)))
|
||||
.map(this::convertPendingDictChangesToLocal)
|
||||
.collect(Collectors.groupingBy(BaseAnnotation::getAnnotationId));
|
||||
} else {
|
||||
manualChangesPerAnnotationId = manualRedactions.buildAll()
|
||||
.stream()
|
||||
.filter(manualChange -> manualChange.getProcessedDate() != null)
|
||||
.filter(BaseAnnotation::isLocal)
|
||||
.collect(Collectors.groupingBy(BaseAnnotation::getAnnotationId));
|
||||
}
|
||||
|
||||
entitiesToMigrate.forEach(migrationEntity -> migrationEntity.applyManualChanges(manualChangesPerAnnotationId.getOrDefault(migrationEntity.getOldId(),
|
||||
Collections.emptyList()),
|
||||
@@ -133,15 +157,40 @@ public class RedactionLogToEntityLogMigrationService {
|
||||
}
|
||||
|
||||
|
||||
private static long getNumberOfApprovedEntries(RedactionLog redactionLog) {
|
||||
private BaseAnnotation convertPendingDictChangesToLocal(BaseAnnotation baseAnnotation) {
|
||||
|
||||
return redactionLog.getRedactionLogEntry().size();
|
||||
if (baseAnnotation.getProcessedDate() != null) {
|
||||
return baseAnnotation;
|
||||
}
|
||||
|
||||
if (baseAnnotation.isLocal()) {
|
||||
return baseAnnotation;
|
||||
}
|
||||
|
||||
if (baseAnnotation instanceof ManualResizeRedaction manualResizeRedaction) {
|
||||
manualResizeRedaction.setAddToAllDossiers(false);
|
||||
manualResizeRedaction.setUpdateDictionary(false);
|
||||
} else if (baseAnnotation instanceof IdRemoval idRemoval) {
|
||||
idRemoval.setRemoveFromAllDossiers(false);
|
||||
idRemoval.setRemoveFromDictionary(false);
|
||||
}
|
||||
|
||||
return baseAnnotation;
|
||||
}
|
||||
|
||||
|
||||
private long getNumberOfApprovedEntries(RedactionLog redactionLog, int numberOfPages) {
|
||||
|
||||
return redactionLog.getRedactionLogEntry()
|
||||
.stream()
|
||||
.filter(redactionLogEntry -> isOnExistingPage(redactionLogEntry, numberOfPages))
|
||||
.count();
|
||||
}
|
||||
|
||||
|
||||
private List<MigrationEntity> calculateMigrationEntitiesFromRedactionLog(RedactionLog redactionLog, Document document, String dossierTemplateId, String fileId) {
|
||||
|
||||
List<MigrationEntity> images = getImageBasedMigrationEntities(redactionLog, document, fileId);
|
||||
List<MigrationEntity> images = getImageBasedMigrationEntities(redactionLog, document, fileId, dossierTemplateId);
|
||||
List<MigrationEntity> textMigrationEntities = getTextBasedMigrationEntities(redactionLog, document, dossierTemplateId, fileId);
|
||||
return Stream.of(textMigrationEntities.stream(), images.stream())
|
||||
.flatMap(Function.identity())
|
||||
@@ -155,7 +204,7 @@ public class RedactionLogToEntityLogMigrationService {
|
||||
}
|
||||
|
||||
|
||||
private List<MigrationEntity> getImageBasedMigrationEntities(RedactionLog redactionLog, Document document, String fileId) {
|
||||
private List<MigrationEntity> getImageBasedMigrationEntities(RedactionLog redactionLog, Document document, String fileId, String dossierTemplateId) {
|
||||
|
||||
List<Image> images = document.streamAllImages()
|
||||
.collect(Collectors.toList());
|
||||
@@ -202,7 +251,7 @@ public class RedactionLogToEntityLogMigrationService {
|
||||
} else {
|
||||
closestImage.skip(ruleIdentifier, reason);
|
||||
}
|
||||
migrationEntities.add(MigrationEntity.fromRedactionLogImage(redactionLogImage, closestImage, fileId));
|
||||
migrationEntities.add(MigrationEntity.fromRedactionLogImage(redactionLogImage, closestImage, fileId, dictionaryService, dossierTemplateId));
|
||||
}
|
||||
return migrationEntities;
|
||||
}
|
||||
@@ -248,7 +297,8 @@ public class RedactionLogToEntityLogMigrationService {
|
||||
List<MigrationEntity> entitiesToMigrate = redactionLog.getRedactionLogEntry()
|
||||
.stream()
|
||||
.filter(redactionLogEntry -> !redactionLogEntry.isImage())
|
||||
.map(entry -> MigrationEntity.fromRedactionLogEntry(entry, dictionaryService.isHint(entry.getType(), dossierTemplateId), fileId))
|
||||
.filter(redactionLogEntry -> isOnExistingPage(redactionLogEntry, document.getNumberOfPages()))
|
||||
.map(entry -> MigrationEntity.fromRedactionLogEntry(entry, fileId, dictionaryService, dossierTemplateId))
|
||||
.toList();
|
||||
|
||||
List<PrecursorEntity> precursorEntities = entitiesToMigrate.stream()
|
||||
@@ -285,4 +335,20 @@ public class RedactionLogToEntityLogMigrationService {
|
||||
return entitiesToMigrate;
|
||||
}
|
||||
|
||||
|
||||
private boolean isOnExistingPage(RedactionLogEntry redactionLogEntry, int numberOfPages) {
|
||||
|
||||
var pages = redactionLogEntry.getPositions()
|
||||
.stream()
|
||||
.map(Rectangle::getPage)
|
||||
.collect(Collectors.toSet());
|
||||
|
||||
for (int page : pages) {
|
||||
if (page > numberOfPages) {
|
||||
return false;
|
||||
}
|
||||
}
|
||||
return true;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
+46
-32
@@ -8,6 +8,7 @@ import java.time.OffsetDateTime;
|
||||
import java.util.Collections;
|
||||
import java.util.LinkedList;
|
||||
import java.util.List;
|
||||
import java.util.Locale;
|
||||
import java.util.Map;
|
||||
import java.util.Optional;
|
||||
import java.util.Set;
|
||||
@@ -19,6 +20,7 @@ import com.iqser.red.service.persistence.service.v1.api.shared.model.analysislog
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.analysislog.entitylog.Position;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.Rectangle;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.BaseAnnotation;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.ManualRecategorization;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.ManualRedactionEntry;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.ManualResizeRedaction;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.dossiertemplate.type.DictionaryEntryType;
|
||||
@@ -30,6 +32,8 @@ import com.iqser.red.service.redaction.v1.server.model.document.entity.IEntity;
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.entity.ManualChangeOverwrite;
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.entity.TextEntity;
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.nodes.Image;
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.nodes.ImageType;
|
||||
import com.iqser.red.service.redaction.v1.server.service.DictionaryService;
|
||||
import com.iqser.red.service.redaction.v1.server.service.ManualChangeFactory;
|
||||
import com.iqser.red.service.redaction.v1.server.service.ManualChangesApplicationService;
|
||||
|
||||
@@ -48,6 +52,8 @@ public final class MigrationEntity {
|
||||
|
||||
private final PrecursorEntity precursorEntity;
|
||||
private final RedactionLogEntry redactionLogEntry;
|
||||
private final DictionaryService dictionaryService;
|
||||
private final String dossierTemplateId;
|
||||
private IEntity migratedEntity;
|
||||
private String oldId;
|
||||
private String newId;
|
||||
@@ -57,10 +63,10 @@ public final class MigrationEntity {
|
||||
List<BaseAnnotation> manualChanges = new LinkedList<>();
|
||||
|
||||
|
||||
public static MigrationEntity fromRedactionLogEntry(RedactionLogEntry redactionLogEntry, boolean hint, String fileId) {
|
||||
public static MigrationEntity fromRedactionLogEntry(RedactionLogEntry redactionLogEntry, String fileId, DictionaryService dictionaryService, String dossierTemplateId) {
|
||||
|
||||
boolean hint = dictionaryService.isHint(redactionLogEntry.getType(), dossierTemplateId);
|
||||
PrecursorEntity precursorEntity = createPrecursorEntity(redactionLogEntry, hint);
|
||||
|
||||
if (precursorEntity.getEntityType().equals(EntityType.HINT) && !redactionLogEntry.isHint() && !redactionLogEntry.isRedacted()) {
|
||||
precursorEntity.ignore(precursorEntity.getRuleIdentifier(), precursorEntity.getReason());
|
||||
} else if (redactionLogEntry.lastChangeIsRemoved()) {
|
||||
@@ -75,13 +81,32 @@ public final class MigrationEntity {
|
||||
precursorEntity.skip(precursorEntity.getRuleIdentifier(), precursorEntity.getReason());
|
||||
}
|
||||
|
||||
return MigrationEntity.builder().precursorEntity(precursorEntity).redactionLogEntry(redactionLogEntry).oldId(redactionLogEntry.getId()).fileId(fileId).build();
|
||||
return MigrationEntity.builder()
|
||||
.precursorEntity(precursorEntity)
|
||||
.redactionLogEntry(redactionLogEntry)
|
||||
.oldId(redactionLogEntry.getId())
|
||||
.fileId(fileId)
|
||||
.dictionaryService(dictionaryService)
|
||||
.dossierTemplateId(dossierTemplateId)
|
||||
.build();
|
||||
}
|
||||
|
||||
|
||||
public static MigrationEntity fromRedactionLogImage(RedactionLogEntry redactionLogImage, Image image, String fileId) {
|
||||
public static MigrationEntity fromRedactionLogImage(RedactionLogEntry redactionLogImage,
|
||||
Image image,
|
||||
String fileId,
|
||||
DictionaryService dictionaryService,
|
||||
String dossierTemplateId) {
|
||||
|
||||
return MigrationEntity.builder().redactionLogEntry(redactionLogImage).migratedEntity(image).oldId(redactionLogImage.getId()).newId(image.getId()).fileId(fileId).build();
|
||||
return MigrationEntity.builder()
|
||||
.redactionLogEntry(redactionLogImage)
|
||||
.migratedEntity(image)
|
||||
.oldId(redactionLogImage.getId())
|
||||
.newId(image.getId())
|
||||
.fileId(fileId)
|
||||
.dictionaryService(dictionaryService)
|
||||
.dossierTemplateId(dossierTemplateId)
|
||||
.build();
|
||||
}
|
||||
|
||||
|
||||
@@ -158,18 +183,6 @@ public final class MigrationEntity {
|
||||
}
|
||||
|
||||
|
||||
private static EntryType getEntryType(EntityType entityType) {
|
||||
|
||||
return switch (entityType) {
|
||||
case ENTITY -> EntryType.ENTITY;
|
||||
case HINT -> EntryType.HINT;
|
||||
case FALSE_POSITIVE -> EntryType.FALSE_POSITIVE;
|
||||
case RECOMMENDATION -> EntryType.RECOMMENDATION;
|
||||
case FALSE_RECOMMENDATION -> EntryType.FALSE_RECOMMENDATION;
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
public EntityLogEntry toEntityLogEntry(Map<String, String> oldToNewIdMapping) {
|
||||
|
||||
EntityLogEntry entityLogEntry;
|
||||
@@ -192,9 +205,6 @@ public final class MigrationEntity {
|
||||
entityLogEntry.setReference(migrateSetOfIds(redactionLogEntry.getReference(), oldToNewIdMapping));
|
||||
entityLogEntry.setImportedRedactionIntersections(migrateSetOfIds(redactionLogEntry.getImportedRedactionIntersections(), oldToNewIdMapping));
|
||||
entityLogEntry.setEngines(MigrationMapper.getMigratedEngines(redactionLogEntry));
|
||||
if (redactionLogEntry.getLegalBasis() != null) {
|
||||
entityLogEntry.setLegalBasis(redactionLogEntry.getLegalBasis());
|
||||
}
|
||||
|
||||
if (entityLogEntry.getEntryType().equals(EntryType.HINT) && lastManualChangeIsRemoveLocally(entityLogEntry)) {
|
||||
entityLogEntry.setState(EntryState.IGNORED);
|
||||
@@ -227,13 +237,15 @@ public final class MigrationEntity {
|
||||
|
||||
public EntityLogEntry createEntityLogEntry(Image image) {
|
||||
|
||||
String imageType = image.getImageType().equals(ImageType.OTHER) ? "image" : image.getImageType().toString().toLowerCase(Locale.ENGLISH);
|
||||
List<Position> positions = getPositionsFromOverride(image).orElse(List.of(new Position(image.getPosition(), image.getPage().getNumber())));
|
||||
return EntityLogEntry.builder()
|
||||
.id(image.getId())
|
||||
.value(image.value())
|
||||
.type(image.type())
|
||||
.value(image.getValue())
|
||||
.type(imageType)
|
||||
.reason(image.buildReasonWithManualChangeDescriptions())
|
||||
.legalBasis(image.legalBasis())
|
||||
.legalBasis(image.getManualOverwrite().getLegalBasis()
|
||||
.orElse(redactionLogEntry.getLegalBasis()))
|
||||
.matchedRule(image.getMatchedRule().getRuleIdentifier().toString())
|
||||
.dictionaryEntry(false)
|
||||
.positions(positions)
|
||||
@@ -245,7 +257,7 @@ public final class MigrationEntity {
|
||||
.textBefore(redactionLogEntry.getTextBefore())
|
||||
.imageHasTransparency(image.isTransparent())
|
||||
.state(buildEntryState(image))
|
||||
.entryType(redactionLogEntry.isHint() ? EntryType.IMAGE_HINT : EntryType.IMAGE)
|
||||
.entryType(dictionaryService.isHint(imageType, dossierTemplateId) ? EntryType.IMAGE_HINT : EntryType.IMAGE)
|
||||
.build();
|
||||
|
||||
}
|
||||
@@ -256,7 +268,8 @@ public final class MigrationEntity {
|
||||
return EntityLogEntry.builder()
|
||||
.id(precursorEntity.getId())
|
||||
.reason(precursorEntity.buildReasonWithManualChangeDescriptions())
|
||||
.legalBasis(precursorEntity.legalBasis())
|
||||
.legalBasis(precursorEntity.getManualOverwrite().getLegalBasis()
|
||||
.orElse(redactionLogEntry.getLegalBasis()))
|
||||
.value(precursorEntity.value())
|
||||
.type(precursorEntity.type())
|
||||
.state(buildEntryState(precursorEntity))
|
||||
@@ -290,7 +303,8 @@ public final class MigrationEntity {
|
||||
.id(entity.getId())
|
||||
.positions(rectanglesPerLine)
|
||||
.reason(entity.buildReasonWithManualChangeDescriptions())
|
||||
.legalBasis(entity.legalBasis())
|
||||
.legalBasis(entity.getManualOverwrite().getLegalBasis()
|
||||
.orElse(redactionLogEntry.getLegalBasis()))
|
||||
.value(entity.getManualOverwrite().getValue()
|
||||
.orElse(entity.getMatchedRule().isWriteValueWithLineBreaks() ? entity.getValueWithLineBreaks() : entity.getValue()))
|
||||
.type(entity.type())
|
||||
@@ -333,11 +347,11 @@ public final class MigrationEntity {
|
||||
}
|
||||
|
||||
|
||||
public boolean hasManualChangesOrComments() {
|
||||
public boolean hasManualChangesOrComments(Set<String> entitiesWithComments, Set<String> entitiesWithUnprocessedChanges) {
|
||||
|
||||
return !(redactionLogEntry.getManualChanges() == null || redactionLogEntry.getManualChanges().isEmpty()) || //
|
||||
!(redactionLogEntry.getComments() == null || redactionLogEntry.getComments().isEmpty()) //
|
||||
|| hasManualChanges();
|
||||
|| hasManualChanges() || entitiesWithComments.contains(oldId) || entitiesWithUnprocessedChanges.contains(oldId);
|
||||
}
|
||||
|
||||
|
||||
@@ -354,6 +368,9 @@ public final class MigrationEntity {
|
||||
if (manualChange instanceof ManualResizeRedaction manualResizeRedaction && migratedEntity instanceof TextEntity textEntity) {
|
||||
manualResizeRedaction.setAnnotationId(newId);
|
||||
manualChangesApplicationService.resize(textEntity, manualResizeRedaction);
|
||||
} else if (manualChange instanceof ManualRecategorization manualRecategorization && migratedEntity instanceof Image image) {
|
||||
image.setImageType(ImageType.fromString(manualRecategorization.getType()));
|
||||
migratedEntity.getManualOverwrite().addChange(manualChange);
|
||||
} else {
|
||||
migratedEntity.getManualOverwrite().addChange(manualChange);
|
||||
}
|
||||
@@ -371,10 +388,7 @@ public final class MigrationEntity {
|
||||
.findFirst()
|
||||
.orElse(manualChanges.get(0)).getUser();
|
||||
|
||||
OffsetDateTime requestDate = manualChanges.stream()
|
||||
.filter(mc -> mc instanceof ManualResizeRedaction)
|
||||
.findFirst()
|
||||
.orElse(manualChanges.get(0)).getRequestDate();
|
||||
OffsetDateTime requestDate = manualChanges.get(0).getRequestDate();
|
||||
|
||||
return ManualRedactionEntry.builder()
|
||||
.annotationId(newId)
|
||||
|
||||
+15
-17
@@ -2,7 +2,6 @@ package com.iqser.red.service.redaction.v1.server.model.dictionary;
|
||||
|
||||
import java.io.Serializable;
|
||||
import java.util.HashMap;
|
||||
import java.util.List;
|
||||
import java.util.Locale;
|
||||
import java.util.Set;
|
||||
import java.util.stream.Collectors;
|
||||
@@ -11,11 +10,11 @@ import com.iqser.red.service.dictionarymerge.commons.DictionaryEntry;
|
||||
import com.iqser.red.service.dictionarymerge.commons.DictionaryEntryModel;
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.entity.MatchedRule;
|
||||
|
||||
import lombok.AllArgsConstructor;
|
||||
import lombok.Data;
|
||||
import lombok.extern.slf4j.Slf4j;
|
||||
|
||||
@Data
|
||||
@AllArgsConstructor
|
||||
@Slf4j
|
||||
public class DictionaryModel implements Serializable {
|
||||
|
||||
private final String type;
|
||||
@@ -29,6 +28,7 @@ public class DictionaryModel implements Serializable {
|
||||
private final Set<DictionaryEntryModel> falseRecommendations;
|
||||
|
||||
private transient SearchImplementation entriesSearch;
|
||||
private transient SearchImplementation deletionEntriesSearch;
|
||||
private transient SearchImplementation falsePositiveSearch;
|
||||
private transient SearchImplementation falseRecommendationsSearch;
|
||||
|
||||
@@ -56,20 +56,6 @@ public class DictionaryModel implements Serializable {
|
||||
this.entries = entries;
|
||||
this.falsePositives = falsePositives;
|
||||
this.falseRecommendations = falseRecommendations;
|
||||
|
||||
this.entriesSearch = new SearchImplementation(this.entries.stream()
|
||||
.filter(e -> !e.isDeleted())
|
||||
.map(DictionaryEntryModel::getValue)
|
||||
.collect(Collectors.toList()), caseInsensitive);
|
||||
this.falsePositiveSearch = new SearchImplementation(this.falsePositives.stream()
|
||||
.filter(e -> !e.isDeleted())
|
||||
.map(DictionaryEntryModel::getValue)
|
||||
.collect(Collectors.toList()), caseInsensitive);
|
||||
this.falseRecommendationsSearch = new SearchImplementation(this.falseRecommendations.stream()
|
||||
.filter(e -> !e.isDeleted())
|
||||
.map(DictionaryEntry::getValue)
|
||||
.collect(Collectors.toList()), caseInsensitive);
|
||||
|
||||
}
|
||||
|
||||
|
||||
@@ -94,6 +80,18 @@ public class DictionaryModel implements Serializable {
|
||||
}
|
||||
|
||||
|
||||
public SearchImplementation getDeletionEntriesSearch() {
|
||||
|
||||
if (deletionEntriesSearch == null) {
|
||||
this.deletionEntriesSearch = new SearchImplementation(this.entries.stream()
|
||||
.filter(DictionaryEntry::isDeleted)
|
||||
.map(DictionaryEntry::getValue)
|
||||
.collect(Collectors.toList()), caseInsensitive);
|
||||
}
|
||||
return deletionEntriesSearch;
|
||||
}
|
||||
|
||||
|
||||
public SearchImplementation getFalsePositiveSearch() {
|
||||
|
||||
if (falsePositiveSearch == null) {
|
||||
|
||||
+2
-1
@@ -5,5 +5,6 @@ public enum EntityType {
|
||||
HINT,
|
||||
RECOMMENDATION,
|
||||
FALSE_POSITIVE,
|
||||
FALSE_RECOMMENDATION
|
||||
FALSE_RECOMMENDATION,
|
||||
DICTIONARY_REMOVAL
|
||||
}
|
||||
|
||||
+1
@@ -132,6 +132,7 @@ public class ManualChangeOverwrite {
|
||||
recategorized = true;
|
||||
type = recategorization.getType();
|
||||
section = recategorization.getSection();
|
||||
value = recategorization.getValue();
|
||||
if (recategorization.getLegalBasis() != null && !recategorization.getLegalBasis().isEmpty()) {
|
||||
legalBasis = recategorization.getLegalBasis();
|
||||
}
|
||||
|
||||
+2
-1
@@ -25,7 +25,8 @@ public final class MatchedRule implements Comparable<MatchedRule> {
|
||||
public static final RuleType FINAL_TYPE = RuleType.fromString("FINAL");
|
||||
public static final RuleType ELIMINATION_RULE_TYPE = RuleType.fromString("X");
|
||||
public static final RuleType IMPORTED_TYPE = RuleType.fromString("IMP");
|
||||
private static final List<RuleType> RULE_TYPE_PRIORITIES = List.of(FINAL_TYPE, ELIMINATION_RULE_TYPE, IMPORTED_TYPE);
|
||||
public static final RuleType DICTIONARY_TYPE = RuleType.fromString("DICT");
|
||||
private static final List<RuleType> RULE_TYPE_PRIORITIES = List.of(FINAL_TYPE, ELIMINATION_RULE_TYPE, IMPORTED_TYPE, DICTIONARY_TYPE);
|
||||
|
||||
RuleIdentifier ruleIdentifier;
|
||||
@Builder.Default
|
||||
|
||||
+22
-10
@@ -40,7 +40,7 @@ public class TextEntity implements IEntity {
|
||||
TextRange textRange;
|
||||
@Builder.Default
|
||||
List<TextRange> duplicateTextRanges = new ArrayList<>();
|
||||
String type; // TODO: make final once ManualChangesApplicatioService recategorize is deleted
|
||||
String type; // TODO: make final once ManualChangesApplicationService::recategorize is deleted
|
||||
final EntityType entityType;
|
||||
|
||||
@Builder.Default
|
||||
@@ -182,25 +182,37 @@ public class TextEntity implements IEntity {
|
||||
|
||||
public boolean containedBy(TextEntity textEntity) {
|
||||
|
||||
return this.textRange.containedBy(textEntity.getTextRange())
|
||||
|| duplicateTextRanges.stream().anyMatch(duplicateTextRange -> duplicateTextRange.containedBy(textEntity.textRange))
|
||||
|| duplicateTextRanges.stream().anyMatch(duplicateTextRange -> textEntity.getDuplicateTextRanges().stream().anyMatch(duplicateTextRange::containedBy));
|
||||
return this.textRange.containedBy(textEntity.getTextRange()) //
|
||||
|| duplicateTextRanges.stream()
|
||||
.anyMatch(duplicateTextRange -> duplicateTextRange.containedBy(textEntity.textRange)) //
|
||||
|| duplicateTextRanges.stream()
|
||||
.anyMatch(duplicateTextRange -> textEntity.getDuplicateTextRanges()
|
||||
.stream()
|
||||
.anyMatch(duplicateTextRange::containedBy));
|
||||
}
|
||||
|
||||
|
||||
public boolean contains(TextEntity textEntity) {
|
||||
|
||||
return this.textRange.contains(textEntity.getTextRange())
|
||||
|| duplicateTextRanges.stream().anyMatch(duplicateTextRange -> duplicateTextRange.contains(textEntity.textRange))
|
||||
|| duplicateTextRanges.stream().anyMatch(duplicateTextRange -> textEntity.getDuplicateTextRanges().stream().anyMatch(duplicateTextRange::contains));
|
||||
return this.textRange.contains(textEntity.getTextRange()) //
|
||||
|| duplicateTextRanges.stream()
|
||||
.anyMatch(duplicateTextRange -> duplicateTextRange.contains(textEntity.textRange)) //
|
||||
|| duplicateTextRanges.stream()
|
||||
.anyMatch(duplicateTextRange -> textEntity.getDuplicateTextRanges()
|
||||
.stream()
|
||||
.anyMatch(duplicateTextRange::contains));
|
||||
}
|
||||
|
||||
|
||||
public boolean intersects(TextEntity textEntity) {
|
||||
|
||||
return this.textRange.intersects(textEntity.getTextRange())
|
||||
|| duplicateTextRanges.stream().anyMatch(duplicateTextRange -> duplicateTextRange.intersects(textEntity.textRange))
|
||||
|| duplicateTextRanges.stream().anyMatch(duplicateTextRange -> textEntity.getDuplicateTextRanges().stream().anyMatch(duplicateTextRange::intersects));
|
||||
return this.textRange.intersects(textEntity.getTextRange()) //
|
||||
|| duplicateTextRanges.stream()
|
||||
.anyMatch(duplicateTextRange -> duplicateTextRange.intersects(textEntity.textRange)) //
|
||||
|| duplicateTextRanges.stream()
|
||||
.anyMatch(duplicateTextRange -> textEntity.getDuplicateTextRanges()
|
||||
.stream()
|
||||
.anyMatch(duplicateTextRange::intersects));
|
||||
}
|
||||
|
||||
|
||||
|
||||
+9
-4
@@ -6,10 +6,11 @@ import java.util.Set;
|
||||
import org.springframework.stereotype.Service;
|
||||
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.analysislog.entitylog.Engine;
|
||||
import com.iqser.red.service.redaction.v1.server.model.dictionary.Dictionary;
|
||||
import com.iqser.red.service.redaction.v1.server.model.dictionary.DictionaryModel;
|
||||
import com.iqser.red.service.redaction.v1.server.model.dictionary.SearchImplementation;
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.entity.EntityType;
|
||||
import com.iqser.red.service.redaction.v1.server.model.document.nodes.SemanticNode;
|
||||
import com.iqser.red.service.redaction.v1.server.model.dictionary.SearchImplementation;
|
||||
import com.iqser.red.service.redaction.v1.server.model.dictionary.Dictionary;
|
||||
import com.iqser.red.service.redaction.v1.server.service.document.EntityCreationService;
|
||||
import com.iqser.red.service.redaction.v1.server.service.document.EntityEnrichmentService;
|
||||
|
||||
@@ -38,10 +39,13 @@ public class DictionarySearchService {
|
||||
@Observed(name = "DictionarySearchService", contextualName = "add-dictionary-entries")
|
||||
public void addDictionaryEntities(Dictionary dictionary, SemanticNode node) {
|
||||
|
||||
for (var model : dictionary.getDictionaryModels()) {
|
||||
for (DictionaryModel model : dictionary.getDictionaryModels()) {
|
||||
bySearchImplementationAsDictionary(model.getEntriesSearch(), model.getType(), model.isHint() ? EntityType.HINT : EntityType.ENTITY, node, model.isDossierDictionary());
|
||||
bySearchImplementationAsDictionary(model.getFalsePositiveSearch(), model.getType(), EntityType.FALSE_POSITIVE, node, model.isDossierDictionary());
|
||||
bySearchImplementationAsDictionary(model.getFalseRecommendationsSearch(), model.getType(), EntityType.FALSE_RECOMMENDATION, node, model.isDossierDictionary());
|
||||
if (model.isDossierDictionary()) {
|
||||
bySearchImplementationAsDictionary(model.getDeletionEntriesSearch(), model.getType(), EntityType.DICTIONARY_REMOVAL, node, model.isDossierDictionary());
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@@ -52,11 +56,12 @@ public class DictionarySearchService {
|
||||
SemanticNode node,
|
||||
boolean isDossierDictionaryEntry) {
|
||||
|
||||
Set<Engine> engines = isDossierDictionaryEntry ? Set.of(Engine.DICTIONARY, Engine.DOSSIER_DICTIONARY) : Set.of(Engine.DICTIONARY);
|
||||
EntityCreationService entityCreationService = new EntityCreationService(entityEnrichmentService);
|
||||
searchImplementation.getBoundaries(node.getTextBlock(), node.getTextRange())
|
||||
.stream()
|
||||
.filter(boundary -> entityCreationService.isValidEntityTextRange(node.getTextBlock(), boundary))
|
||||
.forEach(bounds -> entityCreationService.byTextRangeWithEngine(bounds, type, entityType, node, Set.of(Engine.DICTIONARY))
|
||||
.forEach(bounds -> entityCreationService.byTextRangeWithEngine(bounds, type, entityType, node, engines)
|
||||
.ifPresent(entity -> {
|
||||
entity.setDictionaryEntry(true);
|
||||
entity.setDossierDictionaryEntry(isDossierDictionaryEntry);
|
||||
|
||||
+19
-15
@@ -4,6 +4,7 @@ import java.awt.Color;
|
||||
import java.util.ArrayList;
|
||||
import java.util.Comparator;
|
||||
import java.util.HashSet;
|
||||
import java.util.LinkedList;
|
||||
import java.util.List;
|
||||
import java.util.Locale;
|
||||
import java.util.Optional;
|
||||
@@ -91,7 +92,8 @@ public class DictionaryService {
|
||||
updateDictionaryEntry(dossierTemplateId, dossierDictionaryVersion, getVersion(dossierDictionary), dossierId);
|
||||
}
|
||||
|
||||
return DictionaryVersion.builder().dossierTemplateVersion(dossierTemplateDictionaryVersion).dossierVersion(dossierDictionaryVersion).build();
|
||||
return DictionaryVersion.builder().dossierTemplateVersion(dossierTemplateDictionaryVersion).dossierVersion(dossierDictionaryVersion)
|
||||
.build();
|
||||
}
|
||||
|
||||
|
||||
@@ -368,30 +370,32 @@ public class DictionaryService {
|
||||
@Observed(name = "DictionaryService", contextualName = "deep-copy-dictionary")
|
||||
public Dictionary getDeepCopyDictionary(String dossierTemplateId, String dossierId) {
|
||||
|
||||
List<DictionaryModel> mergedDictionaries;
|
||||
List<DictionaryModel> mergedDictionaries = new LinkedList<>();
|
||||
|
||||
var dossierTemplateRepresentation = getDossierTemplateDictionary(dossierTemplateId);
|
||||
var dossierTemplateDictionaries = dossierTemplateRepresentation.getDictionary();
|
||||
DictionaryRepresentation dossierTemplateRepresentation = getDossierTemplateDictionary(dossierTemplateId);
|
||||
List<DictionaryModel> dossierTemplateDictionaries = dossierTemplateRepresentation.getDictionary();
|
||||
dossierTemplateDictionaries.forEach(dm -> mergedDictionaries.add(SerializationUtils.clone(dm)));
|
||||
|
||||
// merge dictionaries if they have same names
|
||||
// add dossier
|
||||
long dossierDictionaryVersion = -1;
|
||||
if (dossierDictionaryExists(dossierId)) {
|
||||
var dossierRepresentation = getDossierDictionary(dossierId);
|
||||
var dossierDictionaries = dossierRepresentation.getDictionary();
|
||||
mergedDictionaries = convertCommonsDictionaryModel(dictionaryMergeService.getMergedDictionary(convertDictionaryModel(dossierTemplateDictionaries),
|
||||
convertDictionaryModel(dossierDictionaries)));
|
||||
dossierDictionaryVersion = dossierRepresentation.getDictionaryVersion();
|
||||
DictionaryRepresentation dossierRepresentation = getDossierDictionary(dossierId);
|
||||
List<DictionaryModel> dossierDictionaries = dossierRepresentation.getDictionary();
|
||||
dossierDictionaries.forEach(dm -> mergedDictionaries.add(SerializationUtils.clone(dm)));
|
||||
return getDictionary(mergedDictionaries, dossierTemplateRepresentation, dossierRepresentation.getDictionaryVersion());
|
||||
} else {
|
||||
mergedDictionaries = new ArrayList<>();
|
||||
dossierTemplateDictionaries.forEach(dm -> mergedDictionaries.add(SerializationUtils.clone(dm)));
|
||||
return getDictionary(mergedDictionaries, dossierTemplateRepresentation, dossierDictionaryVersion);
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
|
||||
private Dictionary getDictionary(List<DictionaryModel> mergedDictionaries, DictionaryRepresentation dossierTemplateRepresentation, long dossierDictionaryVersion) {
|
||||
|
||||
return new Dictionary(mergedDictionaries.stream()
|
||||
.sorted(Comparator.comparingInt(DictionaryModel::getRank).reversed())
|
||||
.collect(Collectors.toList()),
|
||||
DictionaryVersion.builder()
|
||||
.dossierTemplateVersion(dossierTemplateRepresentation.getDictionaryVersion())
|
||||
.dossierVersion(dossierDictionaryVersion)
|
||||
DictionaryVersion.builder().dossierTemplateVersion(dossierTemplateRepresentation.getDictionaryVersion()).dossierVersion(dossierDictionaryVersion)
|
||||
.build());
|
||||
}
|
||||
|
||||
|
||||
+13
-6
@@ -1,7 +1,6 @@
|
||||
package com.iqser.red.service.redaction.v1.server.service;
|
||||
|
||||
import java.time.OffsetDateTime;
|
||||
import java.util.Comparator;
|
||||
import java.util.List;
|
||||
import java.util.Optional;
|
||||
import java.util.Set;
|
||||
@@ -13,9 +12,6 @@ import com.iqser.red.service.persistence.service.v1.api.shared.model.analysislog
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.analysislog.entitylog.ChangeType;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.analysislog.entitylog.EntityLogEntry;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.analysislog.entitylog.EntryState;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.analysislog.entitylog.ManualChange;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.ManualRedactions;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.IdRemoval;
|
||||
|
||||
import io.micrometer.core.annotation.Timed;
|
||||
import lombok.AccessLevel;
|
||||
@@ -41,9 +37,11 @@ public class EntityChangeLogService {
|
||||
boolean hasChanges = false;
|
||||
|
||||
for (EntityLogEntry entityLogEntry : newEntityLogEntries) {
|
||||
|
||||
Optional<EntityLogEntry> optionalPreviousEntity = previousEntityLogEntries.stream()
|
||||
.filter(entry -> entry.getId().equals(entityLogEntry.getId()))
|
||||
.findAny();
|
||||
|
||||
if (optionalPreviousEntity.isEmpty()) {
|
||||
hasChanges = true;
|
||||
entityLogEntry.getChanges().add(new Change(analysisNumber, ChangeType.ADDED, now));
|
||||
@@ -51,14 +49,18 @@ public class EntityChangeLogService {
|
||||
}
|
||||
|
||||
EntityLogEntry previousEntity = optionalPreviousEntity.get();
|
||||
|
||||
entityLogEntry.getChanges().addAll(previousEntity.getChanges());
|
||||
|
||||
if (!previousEntity.getState().equals(entityLogEntry.getState())) {
|
||||
hasChanges = true;
|
||||
ChangeType changeType = calculateChangeType(entityLogEntry.getState(), previousEntity.getState());
|
||||
entityLogEntry.getChanges().add(new Change(analysisNumber, changeType, now));
|
||||
}
|
||||
}
|
||||
|
||||
addRemovedEntriesAsRemoved(previousEntityLogEntries, newEntityLogEntries, analysisNumber, now);
|
||||
|
||||
return hasChanges;
|
||||
}
|
||||
|
||||
@@ -68,11 +70,16 @@ public class EntityChangeLogService {
|
||||
Set<String> existingIds = newEntityLogEntries.stream()
|
||||
.map(EntityLogEntry::getId)
|
||||
.collect(Collectors.toSet());
|
||||
|
||||
List<EntityLogEntry> removedEntries = previousEntityLogEntries.stream()
|
||||
.filter(entry -> !existingIds.contains(entry.getId()))
|
||||
.toList();
|
||||
removedEntries.forEach(entry -> entry.getChanges().add(new Change(analysisNumber, ChangeType.REMOVED, now)));
|
||||
removedEntries.forEach(entry -> entry.setState(EntryState.REMOVED));
|
||||
|
||||
removedEntries.stream()
|
||||
.filter(entry -> !entry.getState().equals(EntryState.REMOVED))
|
||||
.peek(entry -> entry.getChanges().add(new Change(analysisNumber, ChangeType.REMOVED, now)))
|
||||
.forEach(entry -> entry.setState(EntryState.REMOVED));
|
||||
|
||||
newEntityLogEntries.addAll(removedEntries);
|
||||
}
|
||||
|
||||
|
||||
+7
-4
@@ -52,9 +52,11 @@ public class EntityLogCreatorService {
|
||||
RedactionStorageService redactionStorageService;
|
||||
|
||||
|
||||
private static boolean notFalsePositiveOrFalseRecommendation(TextEntity textEntity) {
|
||||
private static boolean notFalsePositiveOrFalseRecommendationOrRemoval(TextEntity textEntity) {
|
||||
|
||||
return !(textEntity.getEntityType().equals(EntityType.FALSE_POSITIVE) || textEntity.getEntityType().equals(EntityType.FALSE_RECOMMENDATION));
|
||||
return !(textEntity.getEntityType().equals(EntityType.FALSE_POSITIVE) //
|
||||
|| textEntity.getEntityType().equals(EntityType.FALSE_RECOMMENDATION) //
|
||||
|| textEntity.getEntityType().equals(EntityType.DICTIONARY_REMOVAL));
|
||||
}
|
||||
|
||||
|
||||
@@ -145,7 +147,7 @@ public class EntityLogCreatorService {
|
||||
document.getEntities()
|
||||
.stream()
|
||||
.filter(entity -> !entity.getValue().isEmpty())
|
||||
.filter(EntityLogCreatorService::notFalsePositiveOrFalseRecommendation)
|
||||
.filter(EntityLogCreatorService::notFalsePositiveOrFalseRecommendationOrRemoval)
|
||||
.filter(entity -> !entity.removed())
|
||||
.forEach(entityNode -> entries.addAll(toEntityLogEntries(entityNode)));
|
||||
document.streamAllImages()
|
||||
@@ -188,7 +190,7 @@ public class EntityLogCreatorService {
|
||||
boolean isHint = dictionaryService.isHint(imageType, dossierTemplateId);
|
||||
return EntityLogEntry.builder()
|
||||
.id(image.getId())
|
||||
.value(image.value())
|
||||
.value(image.getValue())
|
||||
.type(imageType)
|
||||
.reason(image.buildReasonWithManualChangeDescriptions())
|
||||
.legalBasis(image.legalBasis())
|
||||
@@ -341,6 +343,7 @@ public class EntityLogCreatorService {
|
||||
case FALSE_POSITIVE -> EntryType.FALSE_POSITIVE;
|
||||
case RECOMMENDATION -> EntryType.RECOMMENDATION;
|
||||
case FALSE_RECOMMENDATION -> EntryType.FALSE_RECOMMENDATION;
|
||||
case DICTIONARY_REMOVAL -> EntryType.FALSE_POSITIVE;
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
+2
-1
@@ -34,7 +34,8 @@ public class ManualChangeFactory {
|
||||
manualChange.withManualRedactionType(ManualRedactionType.RECATEGORIZE)
|
||||
.withChange("type", recategorization.getType())
|
||||
.withChange("section", recategorization.getSection())
|
||||
.withChange("legalBasis", recategorization.getLegalBasis());
|
||||
.withChange("legalBasis", recategorization.getLegalBasis())
|
||||
.withChange("value", recategorization.getValue());
|
||||
} else if (baseAnnotation instanceof IdRemoval manualRemoval) {
|
||||
manualChange.withManualRedactionType(manualRemoval.isRemoveFromDictionary() ? ManualRedactionType.REMOVE_FROM_DICTIONARY : ManualRedactionType.REMOVE);
|
||||
} else if (baseAnnotation instanceof ManualForceRedaction manualForceRedaction) {
|
||||
|
||||
+25
-8
@@ -594,6 +594,9 @@ public class EntityCreationService {
|
||||
throw new IllegalArgumentException(String.format("%s is not in the %s of the provided semantic node %s", textRange, node.getTextRange(), node));
|
||||
}
|
||||
TextRange trimmedTextRange = textRange.trim(node.getTextBlock());
|
||||
if (trimmedTextRange.length() == 0){
|
||||
return Optional.empty();
|
||||
}
|
||||
TextEntity entity = TextEntity.initialEntityNode(trimmedTextRange, type, entityType, node);
|
||||
if (node.getEntities().contains(entity)) {
|
||||
Optional<TextEntity> optionalTextEntity = node.getEntities()
|
||||
@@ -679,6 +682,8 @@ public class EntityCreationService {
|
||||
|
||||
addEntityToGraph(mergedEntity, node);
|
||||
insertToKieSession(mergedEntity);
|
||||
|
||||
entitiesToMerge.stream().filter(e -> !e.equals(mergedEntity)).forEach(node.getEntities()::remove);
|
||||
return mergedEntity;
|
||||
}
|
||||
|
||||
@@ -763,26 +768,38 @@ public class EntityCreationService {
|
||||
try {
|
||||
if (node.getEntities().contains(entity)) {
|
||||
// If entity already exists and it has a different text range, we add the text range to the list of duplicated text ranges
|
||||
node.getEntities()
|
||||
Optional<TextEntity> optionalTextEntity = node.getEntities()
|
||||
.stream()//
|
||||
.filter(e -> e.equals(entity))//
|
||||
.filter(e -> !e.getTextRange().equals(entity.getTextRange()))//
|
||||
.findAny()//
|
||||
.ifPresent(entityToDuplicate -> addDuplicateEntityToGraph(entityToDuplicate, entity.getTextRange(), node));
|
||||
.findAny();
|
||||
if (optionalTextEntity.isPresent()) {
|
||||
addDuplicateEntityToGraph(optionalTextEntity.get(), entity.getTextRange(), node);
|
||||
} else {
|
||||
node.getEntities().remove(entity);
|
||||
addNewEntityToGraph(entity, documentTree);
|
||||
}
|
||||
|
||||
} else {
|
||||
entity.addIntersectingNode(documentTree.getRoot().getNode());
|
||||
addEntityToGraph(entity, documentTree);
|
||||
}
|
||||
} catch (NoSuchElementException e) {
|
||||
entity.setDeepestFullyContainingNode(documentTree.getRoot().getNode());
|
||||
entityEnrichmentService.enrichEntity(entity, entity.getDeepestFullyContainingNode().getTextBlock());
|
||||
entity.addIntersectingNode(documentTree.getRoot().getNode());
|
||||
addToPages(entity);
|
||||
addEntityToNodeEntitySets(entity);
|
||||
addNewEntityToGraph(entity, documentTree);
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
private void addNewEntityToGraph(TextEntity entity, DocumentTree documentTree) {
|
||||
|
||||
entity.setDeepestFullyContainingNode(documentTree.getRoot().getNode());
|
||||
entityEnrichmentService.enrichEntity(entity, entity.getDeepestFullyContainingNode().getTextBlock());
|
||||
entity.addIntersectingNode(documentTree.getRoot().getNode());
|
||||
addToPages(entity);
|
||||
addEntityToNodeEntitySets(entity);
|
||||
}
|
||||
|
||||
|
||||
private void addDuplicateEntityToGraph(TextEntity entityToDuplicate, TextRange newTextRange, SemanticNode node) {
|
||||
|
||||
entityToDuplicate.addTextRange(newTextRange);
|
||||
|
||||
+11
@@ -1582,6 +1582,17 @@ rule "X.10.0: remove false positives of ai"
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: X.11
|
||||
rule "X.11.0: Remove dictionary entity which intersects with a manual entity"
|
||||
salience 64
|
||||
when
|
||||
$manualEntity: TextEntity(engines contains Engine.MANUAL, active())
|
||||
$dictionaryEntity: TextEntity(intersects($manualEntity), dictionaryEntry, engines not contains Engine.MANUAL)
|
||||
then
|
||||
$dictionaryEntity.remove("X.11.0", "remove dictionary entity which intersects with a manual entity");
|
||||
retract($dictionaryEntity);
|
||||
end
|
||||
|
||||
|
||||
//------------------------------------ File attributes rules ------------------------------------
|
||||
|
||||
|
||||
+3
-8
@@ -233,18 +233,13 @@ public class DictionaryServiceTest {
|
||||
|
||||
dictionaryService.updateDictionary("dtId", "dossierId");
|
||||
var dict = dictionaryService.getDeepCopyDictionary("dtId", "dossierId");
|
||||
assertThat(dict.getDictionaryModels().size()).isEqualTo(1);
|
||||
assertThat(dict.getDictionaryModels().size()).isEqualTo(2);
|
||||
var dictModel = dict.getDictionaryModels()
|
||||
.get(0);
|
||||
assertThat(dictModel.getType()).isEqualTo(type);
|
||||
assertThat(dictModel.getEntries().size()).isEqualTo(4);
|
||||
assertThat(dictModel.getEntries().size()).isEqualTo(3);
|
||||
dictModel.getEntries()
|
||||
.forEach(entry -> {
|
||||
switch (entry.getValue()) {
|
||||
case "aa", "dd", "bb" -> assertThat(entry.getTypeId()).isEqualTo(dossierType.getTypeId());
|
||||
case "cc" -> assertThat(entry.getTypeId()).isEqualTo(dtType.getTypeId());
|
||||
}
|
||||
});
|
||||
.forEach(entry -> assertThat(entry.getTypeId()).isEqualTo(dtType.getTypeId()));
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
+3
-1
@@ -177,7 +177,9 @@ public class MigrationIntegrationTest extends BuildDocumentIntegrationTest {
|
||||
document,
|
||||
TEST_DOSSIER_TEMPLATE_ID,
|
||||
manualRedactions,
|
||||
TEST_FILE_ID);
|
||||
TEST_FILE_ID,
|
||||
Collections.emptySet(),
|
||||
false);
|
||||
|
||||
redactionStorageService.storeObject(TEST_DOSSIER_ID, TEST_FILE_ID, FileType.ENTITY_LOG, migratedEntityLog.getEntityLog());
|
||||
assertEquals(mergedRedactionLog.getRedactionLogEntry().size(), migratedEntityLog.getEntityLog().getEntityLogEntry().size());
|
||||
|
||||
+84
-17
@@ -540,7 +540,7 @@ rule "PII.2.1: Redact Phone and Fax by RegEx (non vertebrate study)"
|
||||
containsString("Fel") ||
|
||||
containsString("Fer"))
|
||||
then
|
||||
entityCreationService.byRegexIgnoreCase("\\b(contact|telephone|phone|ph\\.|fax|tel|ter|mobile|fel|fer)[a-zA-Z\\s]{0,10}[:.\\s]{0,3}([\\+\\d\\(][\\s\\d\\(\\)\\-\\/\\.]{4,100}\\d)\\b", "PII", EntityType.ENTITY, 2, $section)
|
||||
entityCreationService.byRegexIgnoreCase("\\b(contact|telephone|phone|ph\\.|fax|tel|ter[^m]|mobile|fel|fer)[a-zA-Z\\s]{0,10}[:.\\s]{0,3}([\\+\\d\\(][\\s\\d\\(\\)\\-\\/\\.]{4,100}\\d)\\b", "PII", EntityType.ENTITY, 2, $section)
|
||||
.forEach(contactEntity -> contactEntity.redact("PII.2.1", "Found by Phone and Fax Regex", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
|
||||
end
|
||||
|
||||
@@ -558,7 +558,7 @@ rule "PII.2.2: Redact Phone and Fax by RegEx (vertebrate study)"
|
||||
containsString("Fel") ||
|
||||
containsString("Fer"))
|
||||
then
|
||||
entityCreationService.byRegexIgnoreCase("\\b(contact|telephone|phone|ph\\.|fax|tel|ter|mobile|fel|fer)[a-zA-Z\\s]{0,10}[:.\\s]{0,3}([\\+\\d\\(][\\s\\d\\(\\)\\-\\/\\.]{4,100}\\d)\\b", "PII", EntityType.ENTITY, 2, $section)
|
||||
entityCreationService.byRegexIgnoreCase("\\b(contact|telephone|phone|ph\\.|fax|tel|ter[^m]|mobile|fel|fer)[a-zA-Z\\s]{0,10}[:.\\s]{0,3}([\\+\\d\\(][\\s\\d\\(\\)\\-\\/\\.]{4,100}\\d)\\b", "PII", EntityType.ENTITY, 2, $section)
|
||||
.forEach(contactEntity -> contactEntity.redact("PII.2.2", "Found by Phone and Fax Regex", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
|
||||
end
|
||||
|
||||
@@ -646,6 +646,62 @@ rule "PII.4.1: Redact line after contact information keywords"
|
||||
.forEach(contactEntity -> contactEntity.redact("PII.4.1", "Found after \"" + $contactKeyword + "\" contact keyword", "Article 4(1)(b), Regulation (EC) No 1049/2001 (Personal data)"));
|
||||
end
|
||||
|
||||
rule "PII.4.2: Redact line after contact information keywords (Non vertebrate study)"
|
||||
when
|
||||
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
|
||||
$contactKeyword: String() from List.of("Contact point:",
|
||||
"Contact:",
|
||||
"Alternative contact:",
|
||||
"European contact:",
|
||||
"No:",
|
||||
"Contact:",
|
||||
"Tel.:",
|
||||
"Tel:",
|
||||
"Telephone number:",
|
||||
"Telephone No:",
|
||||
"Telephone:",
|
||||
"Phone No.",
|
||||
"Phone:",
|
||||
"Fax number:",
|
||||
"Fax:",
|
||||
"E-mail:",
|
||||
"Email:",
|
||||
"e-mail:",
|
||||
"E-mail address:")
|
||||
$section: Section(containsString($contactKeyword))
|
||||
then
|
||||
entityCreationService.lineAfterString($contactKeyword, "PII", EntityType.ENTITY, $section)
|
||||
.forEach(contactEntity -> contactEntity.redact("PII.4.2", "Found after \"" + $contactKeyword + "\" contact keyword", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
|
||||
end
|
||||
|
||||
rule "PII.4.3: Redact line after contact information keywords (Vertebrate study)"
|
||||
when
|
||||
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
|
||||
$contactKeyword: String() from List.of("Contact point:",
|
||||
"Contact:",
|
||||
"Alternative contact:",
|
||||
"European contact:",
|
||||
"No:",
|
||||
"Contact:",
|
||||
"Tel.:",
|
||||
"Tel:",
|
||||
"Telephone number:",
|
||||
"Telephone No:",
|
||||
"Telephone:",
|
||||
"Phone No.",
|
||||
"Phone:",
|
||||
"Fax number:",
|
||||
"Fax:",
|
||||
"E-mail:",
|
||||
"Email:",
|
||||
"e-mail:",
|
||||
"E-mail address:")
|
||||
$section: Section(containsString($contactKeyword))
|
||||
then
|
||||
entityCreationService.lineAfterString($contactKeyword, "PII", EntityType.ENTITY, $section)
|
||||
.forEach(contactEntity -> contactEntity.redact("PII.4.3", "Found after \"" + $contactKeyword + "\" contact keyword", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: PII.5
|
||||
rule "PII.5.0: Redact line after contact information keywords reduced"
|
||||
@@ -1191,21 +1247,6 @@ rule "X.0.0: Remove Entity contained by Entity of same type"
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: X.1
|
||||
rule "X.1.0: Merge intersecting Entities of same type"
|
||||
salience 64
|
||||
when
|
||||
$first: TextEntity($type: type(), $entityType: entityType, !resized(), active())
|
||||
$second: TextEntity(intersects($first), type() == $type, entityType == $entityType, this != $first, !hasManualChanges(), active())
|
||||
then
|
||||
TextEntity mergedEntity = entityCreationService.mergeEntitiesOfSameType(List.of($first, $second), $type, $entityType, document);
|
||||
$first.remove("X.1.0", "merge intersecting Entities of same type");
|
||||
$second.remove("X.1.0", "merge intersecting Entities of same type");
|
||||
retract($first);
|
||||
retract($second);
|
||||
mergedEntity.getIntersectingNodes().forEach(node -> update(node));
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: X.2
|
||||
rule "X.2.0: Remove Entity of type ENTITY when contained by FALSE_POSITIVE"
|
||||
@@ -1335,6 +1376,32 @@ rule "X.10.0: remove false positives of ai"
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: X.11
|
||||
rule "X.11.0: Remove dictionary entity which intersects with a manual entity"
|
||||
salience 64
|
||||
when
|
||||
$manualEntity: TextEntity(engines contains Engine.MANUAL, active())
|
||||
$dictionaryEntity: TextEntity(intersects($manualEntity), dictionaryEntry, engines not contains Engine.MANUAL)
|
||||
then
|
||||
$dictionaryEntity.remove("X.11.0", "remove dictionary entity which intersects with a manual entity");
|
||||
retract($dictionaryEntity);
|
||||
end
|
||||
|
||||
|
||||
//------------------------------------ Dictionary merging rules ------------------------------------
|
||||
|
||||
// Rule unit: DICT.0
|
||||
rule "DICT.0.0: Ignore Template Dictionary Entity when contained by Dossier Dictionary DICTIONARY_REMOVAL"
|
||||
salience 64
|
||||
when
|
||||
$dictionaryRemoval: TextEntity($type: type(), entityType == EntityType.DICTIONARY_REMOVAL, engines contains Engine.DOSSIER_DICTIONARY, active())
|
||||
$entity: TextEntity(getTextRange().equals($dictionaryRemoval.getTextRange()), engines contains Engine.DICTIONARY, type() == $type, (entityType == EntityType.ENTITY || entityType == EntityType.HINT), !hasManualChanges())
|
||||
then
|
||||
$entity.getIntersectingNodes().forEach(node -> update(node));
|
||||
$entity.ignore("DICT.0.0", "Ignore Template Dictionary Entity when contained by Dossier Dictionary DICTIONARY_REMOVAL");
|
||||
end
|
||||
|
||||
|
||||
//------------------------------------ File attributes rules ------------------------------------
|
||||
|
||||
// Rule unit: FA.1
|
||||
|
||||
+96
-21
@@ -979,7 +979,7 @@ rule "PII.2.1: Redact Phone and Fax by RegEx (non vertebrate study)"
|
||||
containsString("Fel") ||
|
||||
containsString("Fer"))
|
||||
then
|
||||
entityCreationService.byRegexIgnoreCase("\\b(contact|telephone|phone|ph\\.|fax|tel|ter|mobile|fel|fer)[a-zA-Z\\s]{0,10}[:.\\s]{0,3}([\\+\\d\\(][\\s\\d\\(\\)\\-\\/\\.]{4,100}\\d)\\b", "PII", EntityType.ENTITY, 2, $section)
|
||||
entityCreationService.byRegexIgnoreCase("\\b(contact|telephone|phone|ph\\.|fax|tel|ter[^m]|mobile|fel|fer)[a-zA-Z\\s]{0,10}[:.\\s]{0,3}([\\+\\d\\(][\\s\\d\\(\\)\\-\\/\\.]{4,100}\\d)\\b", "PII", EntityType.ENTITY, 2, $section)
|
||||
.forEach(contactEntity -> contactEntity.redact("PII.2.1", "Found by Phone and Fax Regex", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
|
||||
end
|
||||
|
||||
@@ -997,7 +997,7 @@ rule "PII.2.2: Redact Phone and Fax by RegEx (vertebrate study)"
|
||||
containsString("Fel") ||
|
||||
containsString("Fer"))
|
||||
then
|
||||
entityCreationService.byRegexIgnoreCase("\\b(contact|telephone|phone|ph\\.|fax|tel|ter|mobile|fel|fer)[a-zA-Z\\s]{0,10}[:.\\s]{0,3}([\\+\\d\\(][\\s\\d\\(\\)\\-\\/\\.]{4,100}\\d)\\b", "PII", EntityType.ENTITY, 2, $section)
|
||||
entityCreationService.byRegexIgnoreCase("\\b(contact|telephone|phone|ph\\.|fax|tel|ter[^m]|mobile|fel|fer)[a-zA-Z\\s]{0,10}[:.\\s]{0,3}([\\+\\d\\(][\\s\\d\\(\\)\\-\\/\\.]{4,100}\\d)\\b", "PII", EntityType.ENTITY, 2, $section)
|
||||
.forEach(contactEntity -> contactEntity.redact("PII.2.2", "Found by Phone and Fax Regex", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
|
||||
end
|
||||
|
||||
@@ -1037,6 +1037,7 @@ rule "PII.3.2: Redact telephone numbers by RegEx (vertebrate study)"
|
||||
.forEach(entity -> entity.redact("PII.3.2", "Telephone number found by regex", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: PII.4
|
||||
rule "PII.4.0: Redact line after contact information keywords"
|
||||
when
|
||||
@@ -1092,6 +1093,62 @@ rule "PII.4.1: Redact line after contact information keywords"
|
||||
.forEach(contactEntity -> contactEntity.redact("PII.4.1", "Found after \"" + $contactKeyword + "\" contact keyword", "Article 4(1)(b), Regulation (EC) No 1049/2001 (Personal data)"));
|
||||
end
|
||||
|
||||
rule "PII.4.2: Redact line after contact information keywords (Non vertebrate study)"
|
||||
when
|
||||
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
|
||||
$contactKeyword: String() from List.of("Contact point:",
|
||||
"Contact:",
|
||||
"Alternative contact:",
|
||||
"European contact:",
|
||||
"No:",
|
||||
"Contact:",
|
||||
"Tel.:",
|
||||
"Tel:",
|
||||
"Telephone number:",
|
||||
"Telephone No:",
|
||||
"Telephone:",
|
||||
"Phone No.",
|
||||
"Phone:",
|
||||
"Fax number:",
|
||||
"Fax:",
|
||||
"E-mail:",
|
||||
"Email:",
|
||||
"e-mail:",
|
||||
"E-mail address:")
|
||||
$section: Section(containsString($contactKeyword))
|
||||
then
|
||||
entityCreationService.lineAfterString($contactKeyword, "PII", EntityType.ENTITY, $section)
|
||||
.forEach(contactEntity -> contactEntity.redact("PII.4.2", "Found after \"" + $contactKeyword + "\" contact keyword", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
|
||||
end
|
||||
|
||||
rule "PII.4.3: Redact line after contact information keywords (Vertebrate study)"
|
||||
when
|
||||
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
|
||||
$contactKeyword: String() from List.of("Contact point:",
|
||||
"Contact:",
|
||||
"Alternative contact:",
|
||||
"European contact:",
|
||||
"No:",
|
||||
"Contact:",
|
||||
"Tel.:",
|
||||
"Tel:",
|
||||
"Telephone number:",
|
||||
"Telephone No:",
|
||||
"Telephone:",
|
||||
"Phone No.",
|
||||
"Phone:",
|
||||
"Fax number:",
|
||||
"Fax:",
|
||||
"E-mail:",
|
||||
"Email:",
|
||||
"e-mail:",
|
||||
"E-mail address:")
|
||||
$section: Section(containsString($contactKeyword))
|
||||
then
|
||||
entityCreationService.lineAfterString($contactKeyword, "PII", EntityType.ENTITY, $section)
|
||||
.forEach(contactEntity -> contactEntity.redact("PII.4.3", "Found after \"" + $contactKeyword + "\" contact keyword", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: PII.5
|
||||
rule "PII.5.0: Redact line after contact information keywords reduced"
|
||||
@@ -1340,8 +1397,6 @@ rule "PII.12.0: Expand PII entities with salutation prefix"
|
||||
.ifPresent(expandedEntity -> expandedEntity.apply("PII.12.0", "Expanded PII with salutation prefix", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: PII.12
|
||||
rule "PII.12.1: Expand PII entities with salutation prefix"
|
||||
when
|
||||
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
|
||||
@@ -1351,6 +1406,7 @@ rule "PII.12.1: Expand PII entities with salutation prefix"
|
||||
.ifPresent(expandedEntity -> expandedEntity.apply("PII.12.1", "Expanded PII with salutation prefix", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: PII.13
|
||||
rule "PII.13.0: Add recommendation for PII after Contact Person"
|
||||
when
|
||||
@@ -1542,6 +1598,7 @@ rule "ETC.8.1: Redact formulas (non vertebrate study)"
|
||||
$logo.redact("ETC.8.1", "Logo Found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: ETC.9
|
||||
rule "ETC.9.0: Redact skipped impurities"
|
||||
when
|
||||
@@ -1559,6 +1616,7 @@ rule "ETC.9.1: Redact impurities"
|
||||
$skippedImpurities.redact("ETC.9.1", "Impurity found", "Article 63(2)(b) of Regulation (EC) No 1107/2009");
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: ETC.10
|
||||
rule "ETC.10.0: Redact Product Composition Information"
|
||||
when
|
||||
@@ -1567,6 +1625,7 @@ rule "ETC.10.0: Redact Product Composition Information"
|
||||
$compositionInformation.redact("ETC.10.0", "Product Composition Information found", "Article 63(2)(d) of Regulation (EC) No 1107/2009");
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: ETC.11
|
||||
rule "ETC.11.0: Recommend first line in table cell with name and address of owner"
|
||||
when
|
||||
@@ -1596,6 +1655,7 @@ rule "ETC.12.1: Redact dossier_redaction (Vertebrate study)"
|
||||
$dossierRedaction.redact("ETC.12.1", "Dossier dictionary entry found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
|
||||
end
|
||||
|
||||
|
||||
//------------------------------------ AI rules ------------------------------------
|
||||
|
||||
// Rule unit: AI.0
|
||||
@@ -1641,7 +1701,8 @@ rule "AI.3.0: Recommend authors from AI as PII"
|
||||
.forEach(nerEntity -> entityCreationService.optionalByNerEntity(nerEntity, "PII", EntityType.RECOMMENDATION, document));
|
||||
end
|
||||
|
||||
//------------------------------------ Manual redaction rules ------------------------------------
|
||||
|
||||
//------------------------------------ Manual changes rules ------------------------------------
|
||||
|
||||
// Rule unit: MAN.0
|
||||
rule "MAN.0.0: Apply manual resize redaction"
|
||||
@@ -1761,7 +1822,6 @@ rule "MAN.3.2: Apply image recategorization"
|
||||
retract($recategorization);
|
||||
end
|
||||
|
||||
|
||||
rule "MAN.3.3: Apply recategorization entities by default"
|
||||
salience 128
|
||||
when
|
||||
@@ -1770,6 +1830,7 @@ rule "MAN.3.3: Apply recategorization entities by default"
|
||||
$entity.apply("MAN.3.3", "Recategorized entities are applied by default.", $entity.legalBasis());
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: MAN.4
|
||||
rule "MAN.4.0: Apply legal basis change"
|
||||
salience 128
|
||||
@@ -1808,21 +1869,6 @@ rule "X.0.0: Remove Entity contained by Entity of same type"
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: X.1
|
||||
rule "X.1.0: Merge intersecting Entities of same type"
|
||||
salience 64
|
||||
when
|
||||
$first: TextEntity($type: type(), $entityType: entityType, !resized(), active())
|
||||
$second: TextEntity(intersects($first), type() == $type, entityType == $entityType, this != $first, !hasManualChanges(), active())
|
||||
then
|
||||
TextEntity mergedEntity = entityCreationService.mergeEntitiesOfSameType(List.of($first, $second), $type, $entityType, document);
|
||||
$first.remove("X.1.0", "merge intersecting Entities of same type");
|
||||
$second.remove("X.1.0", "merge intersecting Entities of same type");
|
||||
retract($first);
|
||||
retract($second);
|
||||
mergedEntity.getIntersectingNodes().forEach(node -> update(node));
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: X.2
|
||||
rule "X.2.0: Remove Entity of type ENTITY when contained by FALSE_POSITIVE"
|
||||
@@ -1930,6 +1976,7 @@ rule "X.8.1: Remove Entity when intersected by imported Entity"
|
||||
retract($other);
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: X.9
|
||||
rule "X.9.0: Merge mostly contained signatures"
|
||||
when
|
||||
@@ -1940,6 +1987,7 @@ rule "X.9.0: Merge mostly contained signatures"
|
||||
$signature.addEngine(LayoutEngine.AI);
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: X.10
|
||||
rule "X.10.0: remove false positives of ai"
|
||||
when
|
||||
@@ -1949,6 +1997,33 @@ rule "X.10.0: remove false positives of ai"
|
||||
$aiSignature.remove("X.10.0", "Removed because false positive");
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: X.11
|
||||
rule "X.11.0: Remove dictionary entity which intersects with a manual entity"
|
||||
salience 64
|
||||
when
|
||||
$manualEntity: TextEntity(engines contains Engine.MANUAL, active())
|
||||
$dictionaryEntity: TextEntity(intersects($manualEntity), dictionaryEntry, engines not contains Engine.MANUAL)
|
||||
then
|
||||
$dictionaryEntity.remove("X.11.0", "remove dictionary entity which intersects with a manual entity");
|
||||
retract($dictionaryEntity);
|
||||
end
|
||||
|
||||
|
||||
//------------------------------------ Dictionary merging rules ------------------------------------
|
||||
|
||||
// Rule unit: DICT.0
|
||||
rule "DICT.0.0: Ignore Template Dictionary Entity when contained by Dossier Dictionary DICTIONARY_REMOVAL"
|
||||
salience 64
|
||||
when
|
||||
$dictionaryRemoval: TextEntity($type: type(), entityType == EntityType.DICTIONARY_REMOVAL, engines contains Engine.DOSSIER_DICTIONARY, active())
|
||||
$entity: TextEntity(getTextRange().equals($dictionaryRemoval.getTextRange()), engines contains Engine.DICTIONARY, type() == $type, (entityType == EntityType.ENTITY || entityType == EntityType.HINT), !hasManualChanges())
|
||||
then
|
||||
$entity.getIntersectingNodes().forEach(node -> update(node));
|
||||
$entity.ignore("DICT.0.0", "Ignore Template Dictionary Entity when contained by Dossier Dictionary DICTIONARY_REMOVAL");
|
||||
end
|
||||
|
||||
|
||||
//------------------------------------ File attributes rules ------------------------------------
|
||||
|
||||
// Rule unit: FA.1
|
||||
|
||||
+26
@@ -1437,6 +1437,32 @@ rule "X.10.0: remove false positives of ai"
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: X.11
|
||||
rule "X.11.0: Remove dictionary entity which intersects with a manual entity"
|
||||
salience 64
|
||||
when
|
||||
$manualEntity: TextEntity(engines contains Engine.MANUAL, active())
|
||||
$dictionaryEntity: TextEntity(intersects($manualEntity), dictionaryEntry, engines not contains Engine.MANUAL)
|
||||
then
|
||||
$dictionaryEntity.remove("X.11.0", "remove dictionary entity which intersects with a manual entity");
|
||||
retract($dictionaryEntity);
|
||||
end
|
||||
|
||||
|
||||
//------------------------------------ Dictionary merging rules ------------------------------------
|
||||
|
||||
// Rule unit: DICT.0
|
||||
rule "DICT.0.0: Ignore Template Dictionary Entity when contained by Dossier Dictionary DICTIONARY_REMOVAL"
|
||||
salience 64
|
||||
when
|
||||
$dictionaryRemoval: TextEntity($type: type(), entityType == EntityType.DICTIONARY_REMOVAL, engines contains Engine.DOSSIER_DICTIONARY, active())
|
||||
$entity: TextEntity(getTextRange().equals($dictionaryRemoval.getTextRange()), engines contains Engine.DICTIONARY, type() == $type, (entityType == EntityType.ENTITY || entityType == EntityType.HINT), !hasManualChanges())
|
||||
then
|
||||
$entity.getIntersectingNodes().forEach(node -> update(node));
|
||||
$entity.ignore("DICT.0.0", "Ignore Template Dictionary Entity when contained by Dossier Dictionary DICTIONARY_REMOVAL");
|
||||
end
|
||||
|
||||
|
||||
//------------------------------------ File attributes rules ------------------------------------
|
||||
|
||||
// Rule unit: FA.1
|
||||
|
||||
+31
-17
@@ -296,6 +296,7 @@ rule "CBI.20.2: Redact between \"PERFORMING LABORATORY\" and \"LABORATORY PROJEC
|
||||
});
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: CBI.23
|
||||
rule "CBI.23.0: Redact between \"AUTHOR(S)\" and \"(STUDY) COMPLETION DATE\" (non vertebrate study)"
|
||||
when
|
||||
@@ -315,6 +316,7 @@ rule "CBI.23.1: Redact between \"AUTHOR(S)\" and \"(STUDY) COMPLETION DATE\" (ve
|
||||
.forEach(authorEntity -> authorEntity.redact("CBI.23.1", "AUTHOR(S) was found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
|
||||
end
|
||||
|
||||
|
||||
//------------------------------------ PII rules ------------------------------------
|
||||
|
||||
// Rule unit: PII.0
|
||||
@@ -378,7 +380,7 @@ rule "PII.2.1: Redact Phone and Fax by RegEx (non vertebrate study)"
|
||||
containsString("Fel") ||
|
||||
containsString("Fer"))
|
||||
then
|
||||
entityCreationService.byRegexIgnoreCase("\\b(contact|telephone|phone|ph\\.|fax|tel|ter|mobile|fel|fer)[a-zA-Z\\s]{0,10}[:.\\s]{0,3}([\\+\\d\\(][\\s\\d\\(\\)\\-\\/\\.]{4,100}\\d)\\b", "PII", EntityType.ENTITY, 2, $section)
|
||||
entityCreationService.byRegexIgnoreCase("\\b(contact|telephone|phone|ph\\.|fax|tel|ter[^m]|mobile|fel|fer)[a-zA-Z\\s]{0,10}[:.\\s]{0,3}([\\+\\d\\(][\\s\\d\\(\\)\\-\\/\\.]{4,100}\\d)\\b", "PII", EntityType.ENTITY, 2, $section)
|
||||
.forEach(contactEntity -> contactEntity.redact("PII.2.1", "Found by Phone and Fax Regex", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
|
||||
end
|
||||
|
||||
@@ -396,7 +398,7 @@ rule "PII.2.2: Redact Phone and Fax by RegEx (vertebrate study)"
|
||||
containsString("Fel") ||
|
||||
containsString("Fer"))
|
||||
then
|
||||
entityCreationService.byRegexIgnoreCase("\\b(contact|telephone|phone|ph\\.|fax|tel|ter|mobile|fel|fer)[a-zA-Z\\s]{0,10}[:.\\s]{0,3}([\\+\\d\\(][\\s\\d\\(\\)\\-\\/\\.]{4,100}\\d)\\b", "PII", EntityType.ENTITY, 2, $section)
|
||||
entityCreationService.byRegexIgnoreCase("\\b(contact|telephone|phone|ph\\.|fax|tel|ter[^m]|mobile|fel|fer)[a-zA-Z\\s]{0,10}[:.\\s]{0,3}([\\+\\d\\(][\\s\\d\\(\\)\\-\\/\\.]{4,100}\\d)\\b", "PII", EntityType.ENTITY, 2, $section)
|
||||
.forEach(contactEntity -> contactEntity.redact("PII.2.2", "Found by Phone and Fax Regex", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
|
||||
end
|
||||
|
||||
@@ -504,6 +506,7 @@ rule "PII.8.2: Redact contact information if producer is found (vertebrate study
|
||||
.forEach(entity -> entity.redact("PII.8.2", "Producer was found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: PII.10
|
||||
rule "PII.10.0: Redact study director abbreviation"
|
||||
when
|
||||
@@ -803,21 +806,6 @@ rule "X.0.0: Remove Entity contained by Entity of same type"
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: X.1
|
||||
rule "X.1.0: Merge intersecting Entities of same type"
|
||||
salience 64
|
||||
when
|
||||
$first: TextEntity($type: type(), $entityType: entityType, !resized(), active())
|
||||
$second: TextEntity(intersects($first), type() == $type, entityType == $entityType, this != $first, !hasManualChanges(), active())
|
||||
then
|
||||
TextEntity mergedEntity = entityCreationService.mergeEntitiesOfSameType(List.of($first, $second), $type, $entityType, document);
|
||||
$first.remove("X.1.0", "merge intersecting Entities of same type");
|
||||
$second.remove("X.1.0", "merge intersecting Entities of same type");
|
||||
retract($first);
|
||||
retract($second);
|
||||
mergedEntity.getIntersectingNodes().forEach(node -> update(node));
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: X.2
|
||||
rule "X.2.0: Remove Entity of type ENTITY when contained by FALSE_POSITIVE"
|
||||
@@ -947,6 +935,32 @@ rule "X.10.0: remove false positives of ai"
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: X.11
|
||||
rule "X.11.0: Remove dictionary entity which intersects with a manual entity"
|
||||
salience 64
|
||||
when
|
||||
$manualEntity: TextEntity(engines contains Engine.MANUAL, active())
|
||||
$dictionaryEntity: TextEntity(intersects($manualEntity), dictionaryEntry, engines not contains Engine.MANUAL)
|
||||
then
|
||||
$dictionaryEntity.remove("X.11.0", "remove dictionary entity which intersects with a manual entity");
|
||||
retract($dictionaryEntity);
|
||||
end
|
||||
|
||||
|
||||
//------------------------------------ Dictionary merging rules ------------------------------------
|
||||
|
||||
// Rule unit: DICT.0
|
||||
rule "DICT.0.0: Ignore Template Dictionary Entity when contained by Dossier Dictionary DICTIONARY_REMOVAL"
|
||||
salience 64
|
||||
when
|
||||
$dictionaryRemoval: TextEntity($type: type(), entityType == EntityType.DICTIONARY_REMOVAL, engines contains Engine.DOSSIER_DICTIONARY, active())
|
||||
$entity: TextEntity(getTextRange().equals($dictionaryRemoval.getTextRange()), engines contains Engine.DICTIONARY, type() == $type, (entityType == EntityType.ENTITY || entityType == EntityType.HINT), !hasManualChanges())
|
||||
then
|
||||
$entity.getIntersectingNodes().forEach(node -> update(node));
|
||||
$entity.ignore("DICT.0.0", "Ignore Template Dictionary Entity when contained by Dossier Dictionary DICTIONARY_REMOVAL");
|
||||
end
|
||||
|
||||
|
||||
//------------------------------------ File attributes rules ------------------------------------
|
||||
|
||||
// Rule unit: FA.1
|
||||
|
||||
+26
@@ -278,6 +278,32 @@ rule "X.10.0: remove false positives of ai"
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: X.11
|
||||
rule "X.11.0: Remove dictionary entity which intersects with a manual entity"
|
||||
salience 64
|
||||
when
|
||||
$manualEntity: TextEntity(engines contains Engine.MANUAL, active())
|
||||
$dictionaryEntity: TextEntity(intersects($manualEntity), dictionaryEntry, engines not contains Engine.MANUAL)
|
||||
then
|
||||
$dictionaryEntity.remove("X.11.0", "remove dictionary entity which intersects with a manual entity");
|
||||
retract($dictionaryEntity);
|
||||
end
|
||||
|
||||
|
||||
//------------------------------------ Dictionary merging rules ------------------------------------
|
||||
|
||||
// Rule unit: DICT.0
|
||||
rule "DICT.0.0: Ignore Template Dictionary Entity when contained by Dossier Dictionary DICTIONARY_REMOVAL"
|
||||
salience 64
|
||||
when
|
||||
$dictionaryRemoval: TextEntity($type: type(), entityType == EntityType.DICTIONARY_REMOVAL, engines contains Engine.DOSSIER_DICTIONARY, active())
|
||||
$entity: TextEntity(getTextRange().equals($dictionaryRemoval.getTextRange()), engines contains Engine.DICTIONARY, type() == $type, (entityType == EntityType.ENTITY || entityType == EntityType.HINT), !hasManualChanges())
|
||||
then
|
||||
$entity.getIntersectingNodes().forEach(node -> update(node));
|
||||
$entity.ignore("DICT.0.0", "Ignore Template Dictionary Entity when contained by Dossier Dictionary DICTIONARY_REMOVAL");
|
||||
end
|
||||
|
||||
|
||||
//------------------------------------ Local dictionary search rules ------------------------------------
|
||||
|
||||
// Rule unit: LDS.0
|
||||
|
||||
+82
-17
@@ -274,7 +274,6 @@ rule "CBI.9.1: Redact all cells with Header Author as CBI_author (non vertebrate
|
||||
.forEach(redactionEntity -> redactionEntity.redact("CBI.9.1", "Author found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
|
||||
end
|
||||
|
||||
|
||||
rule "CBI.9.2: Redact all cells with Header Author(s) as CBI_author (non vertebrate study)"
|
||||
agenda-group "LOCAL_DICTIONARY_ADDS"
|
||||
when
|
||||
@@ -602,7 +601,6 @@ rule "CBI.23.1: Redact between \"AUTHOR(S)\" and \"(STUDY) COMPLETION DATE\" (ve
|
||||
|
||||
//------------------------------------ PII rules ------------------------------------
|
||||
|
||||
|
||||
// Rule unit: PII.0
|
||||
rule "PII.0.0: Redact all PII"
|
||||
when
|
||||
@@ -734,6 +732,62 @@ rule "PII.4.1: Redact line after contact information keywords"
|
||||
.forEach(contactEntity -> contactEntity.redact("PII.4.1", "Found after \"" + $contactKeyword + "\" contact keyword", "Article 4(1)(b), Regulation (EC) No 1049/2001 (Personal data)"));
|
||||
end
|
||||
|
||||
rule "PII.4.2: Redact line after contact information keywords (Non vertebrate study)"
|
||||
when
|
||||
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
|
||||
$contactKeyword: String() from List.of("Contact point:",
|
||||
"Contact:",
|
||||
"Alternative contact:",
|
||||
"European contact:",
|
||||
"No:",
|
||||
"Contact:",
|
||||
"Tel.:",
|
||||
"Tel:",
|
||||
"Telephone number:",
|
||||
"Telephone No:",
|
||||
"Telephone:",
|
||||
"Phone No.",
|
||||
"Phone:",
|
||||
"Fax number:",
|
||||
"Fax:",
|
||||
"E-mail:",
|
||||
"Email:",
|
||||
"e-mail:",
|
||||
"E-mail address:")
|
||||
$section: Section(containsString($contactKeyword))
|
||||
then
|
||||
entityCreationService.lineAfterString($contactKeyword, "PII", EntityType.ENTITY, $section)
|
||||
.forEach(contactEntity -> contactEntity.redact("PII.4.2", "Found after \"" + $contactKeyword + "\" contact keyword", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
|
||||
end
|
||||
|
||||
rule "PII.4.3: Redact line after contact information keywords (Vertebrate study)"
|
||||
when
|
||||
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
|
||||
$contactKeyword: String() from List.of("Contact point:",
|
||||
"Contact:",
|
||||
"Alternative contact:",
|
||||
"European contact:",
|
||||
"No:",
|
||||
"Contact:",
|
||||
"Tel.:",
|
||||
"Tel:",
|
||||
"Telephone number:",
|
||||
"Telephone No:",
|
||||
"Telephone:",
|
||||
"Phone No.",
|
||||
"Phone:",
|
||||
"Fax number:",
|
||||
"Fax:",
|
||||
"E-mail:",
|
||||
"Email:",
|
||||
"e-mail:",
|
||||
"E-mail address:")
|
||||
$section: Section(containsString($contactKeyword))
|
||||
then
|
||||
entityCreationService.lineAfterString($contactKeyword, "PII", EntityType.ENTITY, $section)
|
||||
.forEach(contactEntity -> contactEntity.redact("PII.4.3", "Found after \"" + $contactKeyword + "\" contact keyword", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: PII.6
|
||||
rule "PII.6.0: Redact line between contact keywords"
|
||||
@@ -1281,21 +1335,6 @@ rule "X.0.0: Remove Entity contained by Entity of same type"
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: X.1
|
||||
rule "X.1.0: Merge intersecting Entities of same type"
|
||||
salience 64
|
||||
when
|
||||
$first: TextEntity($type: type(), $entityType: entityType, !resized(), active())
|
||||
$second: TextEntity(intersects($first), type() == $type, entityType == $entityType, this != $first, !hasManualChanges(), active())
|
||||
then
|
||||
TextEntity mergedEntity = entityCreationService.mergeEntitiesOfSameType(List.of($first, $second), $type, $entityType, document);
|
||||
$first.remove("X.1.0", "merge intersecting Entities of same type");
|
||||
$second.remove("X.1.0", "merge intersecting Entities of same type");
|
||||
retract($first);
|
||||
retract($second);
|
||||
mergedEntity.getIntersectingNodes().forEach(node -> update(node));
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: X.2
|
||||
rule "X.2.0: Remove Entity of type ENTITY when contained by FALSE_POSITIVE"
|
||||
@@ -1425,6 +1464,32 @@ rule "X.10.0: remove false positives of ai"
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: X.11
|
||||
rule "X.11.0: Remove dictionary entity which intersects with a manual entity"
|
||||
salience 64
|
||||
when
|
||||
$manualEntity: TextEntity(engines contains Engine.MANUAL, active())
|
||||
$dictionaryEntity: TextEntity(intersects($manualEntity), dictionaryEntry, engines not contains Engine.MANUAL)
|
||||
then
|
||||
$dictionaryEntity.remove("X.11.0", "remove dictionary entity which intersects with a manual entity");
|
||||
retract($dictionaryEntity);
|
||||
end
|
||||
|
||||
|
||||
//------------------------------------ Dictionary merging rules ------------------------------------
|
||||
|
||||
// Rule unit: DICT.0
|
||||
rule "DICT.0.0: Ignore Template Dictionary Entity when contained by Dossier Dictionary DICTIONARY_REMOVAL"
|
||||
salience 64
|
||||
when
|
||||
$dictionaryRemoval: TextEntity($type: type(), entityType == EntityType.DICTIONARY_REMOVAL, engines contains Engine.DOSSIER_DICTIONARY, active())
|
||||
$entity: TextEntity(getTextRange().equals($dictionaryRemoval.getTextRange()), engines contains Engine.DICTIONARY, type() == $type, (entityType == EntityType.ENTITY || entityType == EntityType.HINT), !hasManualChanges())
|
||||
then
|
||||
$entity.getIntersectingNodes().forEach(node -> update(node));
|
||||
$entity.ignore("DICT.0.0", "Ignore Template Dictionary Entity when contained by Dossier Dictionary DICTIONARY_REMOVAL");
|
||||
end
|
||||
|
||||
|
||||
//------------------------------------ File attributes rules ------------------------------------
|
||||
|
||||
// Rule unit: FA.1
|
||||
|
||||
+26
-15
@@ -258,21 +258,6 @@ rule "X.0.0: Remove Entity contained by Entity of same type"
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: X.1
|
||||
rule "X.1.0: Merge intersecting Entities of same type"
|
||||
salience 64
|
||||
when
|
||||
$first: TextEntity($type: type(), $entityType: entityType, !resized(), active())
|
||||
$second: TextEntity(intersects($first), type() == $type, entityType == $entityType, this != $first, !hasManualChanges(), active())
|
||||
then
|
||||
TextEntity mergedEntity = entityCreationService.mergeEntitiesOfSameType(List.of($first, $second), $type, $entityType, document);
|
||||
$first.remove("X.1.0", "merge intersecting Entities of same type");
|
||||
$second.remove("X.1.0", "merge intersecting Entities of same type");
|
||||
retract($first);
|
||||
retract($second);
|
||||
mergedEntity.getIntersectingNodes().forEach(node -> update(node));
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: X.2
|
||||
rule "X.2.0: Remove Entity of type ENTITY when contained by FALSE_POSITIVE"
|
||||
@@ -402,6 +387,32 @@ rule "X.10.0: remove false positives of ai"
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: X.11
|
||||
rule "X.11.0: Remove dictionary entity which intersects with a manual entity"
|
||||
salience 64
|
||||
when
|
||||
$manualEntity: TextEntity(engines contains Engine.MANUAL, active())
|
||||
$dictionaryEntity: TextEntity(intersects($manualEntity), dictionaryEntry, engines not contains Engine.MANUAL)
|
||||
then
|
||||
$dictionaryEntity.remove("X.11.0", "remove dictionary entity which intersects with a manual entity");
|
||||
retract($dictionaryEntity);
|
||||
end
|
||||
|
||||
|
||||
//------------------------------------ Dictionary merging rules ------------------------------------
|
||||
|
||||
// Rule unit: DICT.0
|
||||
rule "DICT.0.0: Ignore Template Dictionary Entity when contained by Dossier Dictionary DICTIONARY_REMOVAL"
|
||||
salience 64
|
||||
when
|
||||
$dictionaryRemoval: TextEntity($type: type(), entityType == EntityType.DICTIONARY_REMOVAL, engines contains Engine.DOSSIER_DICTIONARY, active())
|
||||
$entity: TextEntity(getTextRange().equals($dictionaryRemoval.getTextRange()), engines contains Engine.DICTIONARY, type() == $type, (entityType == EntityType.ENTITY || entityType == EntityType.HINT), !hasManualChanges())
|
||||
then
|
||||
$entity.getIntersectingNodes().forEach(node -> update(node));
|
||||
$entity.ignore("DICT.0.0", "Ignore Template Dictionary Entity when contained by Dossier Dictionary DICTIONARY_REMOVAL");
|
||||
end
|
||||
|
||||
|
||||
//------------------------------------ File attributes rules ------------------------------------
|
||||
|
||||
// Rule unit: FA.1
|
||||
|
||||
+26
@@ -523,6 +523,32 @@ rule "X.10.0: remove false positives of ai"
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: X.11
|
||||
rule "X.11.0: Remove dictionary entity which intersects with a manual entity"
|
||||
salience 64
|
||||
when
|
||||
$manualEntity: TextEntity(engines contains Engine.MANUAL, active())
|
||||
$dictionaryEntity: TextEntity(intersects($manualEntity), dictionaryEntry, engines not contains Engine.MANUAL)
|
||||
then
|
||||
$dictionaryEntity.remove("X.11.0", "remove dictionary entity which intersects with a manual entity");
|
||||
retract($dictionaryEntity);
|
||||
end
|
||||
|
||||
|
||||
//------------------------------------ Dictionary merging rules ------------------------------------
|
||||
|
||||
// Rule unit: DICT.0
|
||||
rule "DICT.0.0: Ignore Template Dictionary Entity when contained by Dossier Dictionary DICTIONARY_REMOVAL"
|
||||
salience 64
|
||||
when
|
||||
$dictionaryRemoval: TextEntity($type: type(), entityType == EntityType.DICTIONARY_REMOVAL, engines contains Engine.DOSSIER_DICTIONARY, active())
|
||||
$entity: TextEntity(getTextRange().equals($dictionaryRemoval.getTextRange()), engines contains Engine.DICTIONARY, type() == $type, (entityType == EntityType.ENTITY || entityType == EntityType.HINT), !hasManualChanges())
|
||||
then
|
||||
$entity.getIntersectingNodes().forEach(node -> update(node));
|
||||
$entity.ignore("DICT.0.0", "Ignore Template Dictionary Entity when contained by Dossier Dictionary DICTIONARY_REMOVAL");
|
||||
end
|
||||
|
||||
|
||||
//------------------------------------ File attributes rules ------------------------------------
|
||||
|
||||
// Rule unit: FA.1
|
||||
|
||||
+26
-15
@@ -284,21 +284,6 @@ rule "X.0.0: Remove Entity contained by Entity of same type"
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: X.1
|
||||
rule "X.1.0: Merge intersecting Entities of same type"
|
||||
salience 64
|
||||
when
|
||||
$first: TextEntity($type: type(), $entityType: entityType, !resized(), active())
|
||||
$second: TextEntity(intersects($first), type() == $type, entityType == $entityType, this != $first, !hasManualChanges(), active())
|
||||
then
|
||||
TextEntity mergedEntity = entityCreationService.mergeEntitiesOfSameType(List.of($first, $second), $type, $entityType, document);
|
||||
$first.remove("X.1.0", "merge intersecting Entities of same type");
|
||||
$second.remove("X.1.0", "merge intersecting Entities of same type");
|
||||
retract($first);
|
||||
retract($second);
|
||||
mergedEntity.getIntersectingNodes().forEach(node -> update(node));
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: X.2
|
||||
rule "X.2.0: Remove Entity of type ENTITY when contained by FALSE_POSITIVE"
|
||||
@@ -439,6 +424,32 @@ rule "X.10.0: remove false positives of ai"
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: X.11
|
||||
rule "X.11.0: Remove dictionary entity which intersects with a manual entity"
|
||||
salience 64
|
||||
when
|
||||
$manualEntity: TextEntity(engines contains Engine.MANUAL, active())
|
||||
$dictionaryEntity: TextEntity(intersects($manualEntity), dictionaryEntry, engines not contains Engine.MANUAL)
|
||||
then
|
||||
$dictionaryEntity.remove("X.11.0", "remove dictionary entity which intersects with a manual entity");
|
||||
retract($dictionaryEntity);
|
||||
end
|
||||
|
||||
|
||||
//------------------------------------ Dictionary merging rules ------------------------------------
|
||||
|
||||
// Rule unit: DICT.0
|
||||
rule "DICT.0.0: Ignore Template Dictionary Entity when contained by Dossier Dictionary DICTIONARY_REMOVAL"
|
||||
salience 64
|
||||
when
|
||||
$dictionaryRemoval: TextEntity($type: type(), entityType == EntityType.DICTIONARY_REMOVAL, engines contains Engine.DOSSIER_DICTIONARY, active())
|
||||
$entity: TextEntity(getTextRange().equals($dictionaryRemoval.getTextRange()), engines contains Engine.DICTIONARY, type() == $type, (entityType == EntityType.ENTITY || entityType == EntityType.HINT), !hasManualChanges())
|
||||
then
|
||||
$entity.getIntersectingNodes().forEach(node -> update(node));
|
||||
$entity.ignore("DICT.0.0", "Ignore Template Dictionary Entity when contained by Dossier Dictionary DICTIONARY_REMOVAL");
|
||||
end
|
||||
|
||||
|
||||
//------------------------------------ File attributes rules ------------------------------------
|
||||
|
||||
// Rule unit: FA.1
|
||||
|
||||
+1
-5
@@ -33,11 +33,7 @@ public class RuleFileMigrator {
|
||||
rulesToAdd.forEach(ruleFileBluePrint::addRule);
|
||||
}
|
||||
|
||||
RuleFileBluePrint newBluePrint = new RuleFileBluePrint(combinedBluePrint.imports(),
|
||||
combinedBluePrint.globals(),
|
||||
combinedBluePrint.queries(),
|
||||
ruleFileBluePrint.ruleClasses());
|
||||
String migratedRulesString = RuleFileFactory.buildRuleString(newBluePrint);
|
||||
String migratedRulesString = RuleFileFactory.buildRuleString(ruleFileBluePrint);
|
||||
String migratedFilePath = ruleFile.getAbsolutePath();
|
||||
try (var out = new FileOutputStream(migratedFilePath)) {
|
||||
out.write(migratedRulesString.getBytes(StandardCharsets.UTF_8));
|
||||
|
||||
+1
@@ -17,6 +17,7 @@ public class RuleType {
|
||||
"ETC", "Other",//
|
||||
"MAN", "Manual changes",//
|
||||
"X", "Entity merging",//
|
||||
"DICT", "Dictionary merging",//
|
||||
"FA", "File attributes",//
|
||||
"LDS", "Local dictionary search",//
|
||||
"TAB", "Table extraction",//
|
||||
|
||||
+85
-17
@@ -979,7 +979,7 @@ rule "PII.2.1: Redact Phone and Fax by RegEx (non vertebrate study)"
|
||||
containsString("Fel") ||
|
||||
containsString("Fer"))
|
||||
then
|
||||
entityCreationService.byRegexIgnoreCase("\\b(contact|telephone|phone|ph\\.|fax|tel|ter|mobile|fel|fer)[a-zA-Z\\s]{0,10}[:.\\s]{0,3}([\\+\\d\\(][\\s\\d\\(\\)\\-\\/\\.]{4,100}\\d)\\b", "PII", EntityType.ENTITY, 2, $section)
|
||||
entityCreationService.byRegexIgnoreCase("\\b(contact|telephone|phone|ph\\.|fax|tel|ter[^m]|mobile|fel|fer)[a-zA-Z\\s]{0,10}[:.\\s]{0,3}([\\+\\d\\(][\\s\\d\\(\\)\\-\\/\\.]{4,100}\\d)\\b", "PII", EntityType.ENTITY, 2, $section)
|
||||
.forEach(contactEntity -> contactEntity.redact("PII.2.1", "Found by Phone and Fax Regex", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
|
||||
end
|
||||
|
||||
@@ -997,7 +997,7 @@ rule "PII.2.2: Redact Phone and Fax by RegEx (vertebrate study)"
|
||||
containsString("Fel") ||
|
||||
containsString("Fer"))
|
||||
then
|
||||
entityCreationService.byRegexIgnoreCase("\\b(contact|telephone|phone|ph\\.|fax|tel|ter|mobile|fel|fer)[a-zA-Z\\s]{0,10}[:.\\s]{0,3}([\\+\\d\\(][\\s\\d\\(\\)\\-\\/\\.]{4,100}\\d)\\b", "PII", EntityType.ENTITY, 2, $section)
|
||||
entityCreationService.byRegexIgnoreCase("\\b(contact|telephone|phone|ph\\.|fax|tel|ter[^m]|mobile|fel|fer)[a-zA-Z\\s]{0,10}[:.\\s]{0,3}([\\+\\d\\(][\\s\\d\\(\\)\\-\\/\\.]{4,100}\\d)\\b", "PII", EntityType.ENTITY, 2, $section)
|
||||
.forEach(contactEntity -> contactEntity.redact("PII.2.2", "Found by Phone and Fax Regex", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
|
||||
end
|
||||
|
||||
@@ -1092,6 +1092,62 @@ rule "PII.4.1: Redact line after contact information keywords"
|
||||
.forEach(contactEntity -> contactEntity.redact("PII.4.1", "Found after \"" + $contactKeyword + "\" contact keyword", "Article 4(1)(b), Regulation (EC) No 1049/2001 (Personal data)"));
|
||||
end
|
||||
|
||||
rule "PII.4.2: Redact line after contact information keywords (Non vertebrate study)"
|
||||
when
|
||||
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
|
||||
$contactKeyword: String() from List.of("Contact point:",
|
||||
"Contact:",
|
||||
"Alternative contact:",
|
||||
"European contact:",
|
||||
"No:",
|
||||
"Contact:",
|
||||
"Tel.:",
|
||||
"Tel:",
|
||||
"Telephone number:",
|
||||
"Telephone No:",
|
||||
"Telephone:",
|
||||
"Phone No.",
|
||||
"Phone:",
|
||||
"Fax number:",
|
||||
"Fax:",
|
||||
"E-mail:",
|
||||
"Email:",
|
||||
"e-mail:",
|
||||
"E-mail address:")
|
||||
$section: Section(containsString($contactKeyword))
|
||||
then
|
||||
entityCreationService.lineAfterString($contactKeyword, "PII", EntityType.ENTITY, $section)
|
||||
.forEach(contactEntity -> contactEntity.redact("PII.4.2", "Found after \"" + $contactKeyword + "\" contact keyword", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
|
||||
end
|
||||
|
||||
rule "PII.4.3: Redact line after contact information keywords (Vertebrate study)"
|
||||
when
|
||||
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
|
||||
$contactKeyword: String() from List.of("Contact point:",
|
||||
"Contact:",
|
||||
"Alternative contact:",
|
||||
"European contact:",
|
||||
"No:",
|
||||
"Contact:",
|
||||
"Tel.:",
|
||||
"Tel:",
|
||||
"Telephone number:",
|
||||
"Telephone No:",
|
||||
"Telephone:",
|
||||
"Phone No.",
|
||||
"Phone:",
|
||||
"Fax number:",
|
||||
"Fax:",
|
||||
"E-mail:",
|
||||
"Email:",
|
||||
"e-mail:",
|
||||
"E-mail address:")
|
||||
$section: Section(containsString($contactKeyword))
|
||||
then
|
||||
entityCreationService.lineAfterString($contactKeyword, "PII", EntityType.ENTITY, $section)
|
||||
.forEach(contactEntity -> contactEntity.redact("PII.4.3", "Found after \"" + $contactKeyword + "\" contact keyword", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: PII.5
|
||||
rule "PII.5.0: Redact line after contact information keywords reduced"
|
||||
@@ -1808,21 +1864,6 @@ rule "X.0.0: Remove Entity contained by Entity of same type"
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: X.1
|
||||
rule "X.1.0: Merge intersecting Entities of same type"
|
||||
salience 64
|
||||
when
|
||||
$first: TextEntity($type: type(), $entityType: entityType, !resized(), active())
|
||||
$second: TextEntity(intersects($first), type() == $type, entityType == $entityType, this != $first, !hasManualChanges(), active())
|
||||
then
|
||||
TextEntity mergedEntity = entityCreationService.mergeEntitiesOfSameType(List.of($first, $second), $type, $entityType, document);
|
||||
$first.remove("X.1.0", "merge intersecting Entities of same type");
|
||||
$second.remove("X.1.0", "merge intersecting Entities of same type");
|
||||
retract($first);
|
||||
retract($second);
|
||||
mergedEntity.getIntersectingNodes().forEach(node -> update(node));
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: X.2
|
||||
rule "X.2.0: Remove Entity of type ENTITY when contained by FALSE_POSITIVE"
|
||||
@@ -1949,6 +1990,33 @@ rule "X.10.0: remove false positives of ai"
|
||||
$aiSignature.remove("X.10.0", "Removed because false positive");
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: X.11
|
||||
rule "X.11.0: Remove dictionary entity which intersects with a manual entity"
|
||||
salience 64
|
||||
when
|
||||
$manualEntity: TextEntity(engines contains Engine.MANUAL, active())
|
||||
$dictionaryEntity: TextEntity(intersects($manualEntity), dictionaryEntry, engines not contains Engine.MANUAL)
|
||||
then
|
||||
$dictionaryEntity.remove("X.11.0", "remove dictionary entity which intersects with a manual entity");
|
||||
retract($dictionaryEntity);
|
||||
end
|
||||
|
||||
|
||||
//------------------------------------ Dictionary merging rules ------------------------------------
|
||||
|
||||
// Rule unit: DICT.0
|
||||
rule "DICT.0.0: Ignore Template Dictionary Entity when contained by Dossier Dictionary DICTIONARY_REMOVAL"
|
||||
salience 64
|
||||
when
|
||||
$dictionaryRemoval: TextEntity($type: type(), entityType == EntityType.DICTIONARY_REMOVAL, engines contains Engine.DOSSIER_DICTIONARY, active())
|
||||
$entity: TextEntity(getTextRange().equals($dictionaryRemoval.getTextRange()), engines contains Engine.DICTIONARY, type() == $type, (entityType == EntityType.ENTITY || entityType == EntityType.HINT), !hasManualChanges())
|
||||
then
|
||||
$entity.getIntersectingNodes().forEach(node -> update(node));
|
||||
$entity.ignore("DICT.0.0", "Ignore Template Dictionary Entity when contained by Dossier Dictionary DICTIONARY_REMOVAL");
|
||||
end
|
||||
|
||||
|
||||
//------------------------------------ File attributes rules ------------------------------------
|
||||
|
||||
// Rule unit: FA.1
|
||||
|
||||
@@ -1582,6 +1582,31 @@ rule "X.10.0: remove false positives of ai"
|
||||
end
|
||||
|
||||
|
||||
// Rule unit: X.11
|
||||
rule "X.11.0: Remove dictionary entity which intersects with a manual entity"
|
||||
salience 64
|
||||
when
|
||||
$manualEntity: TextEntity(engines contains Engine.MANUAL, active())
|
||||
$dictionaryEntity: TextEntity(intersects($manualEntity), dictionaryEntry, engines not contains Engine.MANUAL)
|
||||
then
|
||||
$dictionaryEntity.remove("X.11.0", "remove dictionary entity which intersects with a manual entity");
|
||||
retract($dictionaryEntity);
|
||||
end
|
||||
|
||||
|
||||
//------------------------------------ Dictionary merging rules ------------------------------------
|
||||
|
||||
// Rule unit: DICT.0
|
||||
rule "DICT.0.0: Ignore Template Dictionary Entity when contained by Dossier Dictionary DICTIONARY_REMOVAL"
|
||||
salience 64
|
||||
when
|
||||
$dictionaryRemoval: TextEntity($type: type(), entityType == EntityType.DICTIONARY_REMOVAL, engines contains Engine.DOSSIER_DICTIONARY, active())
|
||||
$entity: TextEntity(getTextRange().equals($dictionaryRemoval.getTextRange()), engines contains Engine.DICTIONARY, type() == $type, (entityType == EntityType.ENTITY || entityType == EntityType.HINT), !hasManualChanges())
|
||||
then
|
||||
$entity.getIntersectingNodes().forEach(node -> update(node));
|
||||
$entity.ignore("DICT.0.0", "Ignore Template Dictionary Entity when contained by Dossier Dictionary DICTIONARY_REMOVAL");
|
||||
end
|
||||
|
||||
|
||||
//------------------------------------ File attributes rules ------------------------------------
|
||||
|
||||
|
||||
@@ -8,5 +8,6 @@ X.5.0
|
||||
X.5.1
|
||||
X.6.*
|
||||
X.8.*
|
||||
DICT.*.*
|
||||
FA.*.*
|
||||
LDS.*.*
|
||||
+1
@@ -7,5 +7,6 @@ X.5.0
|
||||
X.5.1
|
||||
X.7.0
|
||||
X.8.*
|
||||
DICT.*.*
|
||||
FA.*.*
|
||||
LDS.*.*
|
||||
@@ -9,5 +9,6 @@ ETC
|
||||
AI
|
||||
MAN
|
||||
X
|
||||
DICT
|
||||
FA
|
||||
LDS
|
||||
Reference in New Issue
Block a user