Compare commits
43
Commits
| Author | SHA1 | Date | |
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fcc4085321 | ||
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8490690001 | ||
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2646407805 | ||
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999973a00f | ||
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7d4b3f40d3 | ||
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d366d9207a | ||
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e22e16aef1 | ||
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077677e02d | ||
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09de0dc2c6 | ||
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c3b29e4ebc | ||
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adcf17c5f0 | ||
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49860ab95d | ||
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2a56187294 | ||
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710747d00b | ||
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4e76c007b8 | ||
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6e5b64ca94 | ||
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157b20a1de | ||
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7644afc3aa | ||
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89e09f780d | ||
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f03523ca8f | ||
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459af9e33b | ||
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3626dbd0a9 | ||
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cec18a472f | ||
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339833e2d6 | ||
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ec0de5b6a2 | ||
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4b42c8d13f | ||
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fe5121b1ed | ||
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519bb9cb52 | ||
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6c0886e2c4 | ||
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9f70fb75dd | ||
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9f396cccdf |
@@ -103,7 +103,7 @@ public class PlanSpec {
|
||||
.enabled(true),
|
||||
new InjectVariablesTask().description("Inject git Tag").path("git.tag").namespace("g").scope(InjectVariablesScope.LOCAL),
|
||||
new VcsTagTask().description("${bamboo.g.gitTag}").tagName("${bamboo.g.gitTag}").defaultRepository())
|
||||
.dockerConfiguration(new DockerConfiguration().image("nexus.iqser.com:5001/infra/maven:3.8.4-openjdk-17-slim")
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||||
.dockerConfiguration(new DockerConfiguration().image("nexus.knecon.com:5001/infra/maven:3.8.4-openjdk-17-slim")
|
||||
.volume("/etc/maven/settings.xml", "/usr/share/maven/ref/settings.xml")
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||||
.volume("/var/run/docker.sock", "/var/run/docker.sock"))))
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||||
.linkedRepositories("RED / " + SERVICE_NAME)
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||||
@@ -128,7 +128,7 @@ public class PlanSpec {
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createJUnitParserTask().description("Resultparser")
|
||||
.resultDirectories("**/test-reports/*.xml, **/target/surefire-reports/*.xml, **/target/failsafe-reports/*.xml")
|
||||
.enabled(true))
|
||||
.dockerConfiguration(new DockerConfiguration().image("nexus.iqser.com:5001/infra/maven:3.8.4-openjdk-17-slim")
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||||
.dockerConfiguration(new DockerConfiguration().image("nexus.knecon.com:5001/infra/maven:3.8.4-openjdk-17-slim")
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.volume("/etc/maven/settings.xml", "/usr/share/maven/ref/settings.xml")
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||||
.volume("/var/run/docker.sock", "/var/run/docker.sock"))))
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.linkedRepositories("RED / " + SERVICE_NAME)
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||||
|
||||
@@ -54,7 +54,7 @@ mvn -f ${bamboo_build_working_directory}/$SERVICE_NAME-v1/pom.xml \
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-Dmaven.wagon.http.ssl.insecure=true \
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-Dmaven.wagon.http.ssl.allowall=true \
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-Dmaven.wagon.http.ssl.ignore.validity.dates=true \
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||||
-DaltDeploymentRepository=iqser_release::default::https://nexus.iqser.com/repository/red-platform-releases
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-DaltDeploymentRepository=iqser_release::default::https://nexus.knecon.com/repository/red-platform-releases
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||||
|
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mvn --no-transfer-progress \
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-f ${bamboo_build_working_directory}/$SERVICE_NAME-image-v1/pom.xml \
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||||
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||||
@@ -22,7 +22,7 @@ then
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||||
-f ${bamboo_build_working_directory}/$SERVICE_NAME-v1/pom.xml \
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sonar:sonar \
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-Dsonar.projectKey=RED_$SERVICE_NAME \
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-Dsonar.host.url=https://sonarqube.iqser.com \
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-Dsonar.host.url=https://sonarqube.knecon.com \
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-Dsonar.login=${bamboo_sonarqube_api_token_secret} \
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||||
-Dsonar.branch.name=${bamboo_planRepository_1_branch} \
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||||
-Dsonar.dependencyCheck.jsonReportPath=target/dependency-check-report.json \
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||||
@@ -34,7 +34,7 @@ else
|
||||
-f ${bamboo_build_working_directory}/$SERVICE_NAME-v1/pom.xml \
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||||
sonar:sonar \
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||||
-Dsonar.projectKey=RED_$SERVICE_NAME \
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||||
-Dsonar.host.url=https://sonarqube.iqser.com \
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||||
-Dsonar.host.url=https://sonarqube.knecon.com \
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||||
-Dsonar.login=${bamboo_sonarqube_api_token_secret} \
|
||||
-Dsonar.pullrequest.key=${bamboo_repository_pr_key} \
|
||||
-Dsonar.pullrequest.branch=${bamboo_repository_pr_sourceBranch} \
|
||||
|
||||
@@ -3,9 +3,9 @@
|
||||
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
|
||||
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
|
||||
<parent>
|
||||
<groupId>com.iqser.red</groupId>
|
||||
<groupId>com.knecon.fforesight</groupId>
|
||||
<artifactId>platform-docker-dependency</artifactId>
|
||||
<version>1.2.0</version>
|
||||
<version>0.1.0</version>
|
||||
<relativePath/>
|
||||
</parent>
|
||||
<modelVersion>4.0.0</modelVersion>
|
||||
|
||||
@@ -5,14 +5,14 @@
|
||||
<parent>
|
||||
<artifactId>platform-dependency</artifactId>
|
||||
<groupId>com.iqser.red</groupId>
|
||||
<version>1.17.0</version>
|
||||
<version>2.2.0</version>
|
||||
<relativePath/>
|
||||
</parent>
|
||||
<modelVersion>4.0.0</modelVersion>
|
||||
|
||||
<artifactId>redaction-service-v1</artifactId>
|
||||
<groupId>com.iqser.red.service</groupId>
|
||||
<version>1.0-SNAPSHOT</version>
|
||||
<version>4.0-SNAPSHOT</version>
|
||||
|
||||
<packaging>pom</packaging>
|
||||
|
||||
@@ -23,7 +23,6 @@
|
||||
|
||||
<properties>
|
||||
<pdfbox.version>2.0.24</pdfbox.version>
|
||||
<dsljson.version>1.9.9</dsljson.version>
|
||||
</properties>
|
||||
|
||||
|
||||
@@ -32,7 +31,7 @@
|
||||
<dependency>
|
||||
<groupId>com.iqser.red</groupId>
|
||||
<artifactId>platform-commons-dependency</artifactId>
|
||||
<version>1.22.0</version>
|
||||
<version>2.1.0</version>
|
||||
<scope>import</scope>
|
||||
<type>pom</type>
|
||||
</dependency>
|
||||
|
||||
@@ -6,7 +6,7 @@
|
||||
<parent>
|
||||
<artifactId>redaction-service-v1</artifactId>
|
||||
<groupId>com.iqser.red.service</groupId>
|
||||
<version>1.0-SNAPSHOT</version>
|
||||
<version>4.0-SNAPSHOT</version>
|
||||
</parent>
|
||||
|
||||
<artifactId>redaction-service-api-v1</artifactId>
|
||||
@@ -17,13 +17,6 @@
|
||||
|
||||
<dependencies>
|
||||
|
||||
<!-- https://mvnrepository.com/artifact/com.dslplatform/dsl-json-java8 -->
|
||||
<dependency>
|
||||
<groupId>com.dslplatform</groupId>
|
||||
<artifactId>dsl-json-java8</artifactId>
|
||||
<version>${dsljson.version}</version>
|
||||
</dependency>
|
||||
|
||||
<dependency>
|
||||
<groupId>org.springframework</groupId>
|
||||
<artifactId>spring-web</artifactId>
|
||||
@@ -55,10 +48,13 @@
|
||||
<groupId>org.apache.maven.plugins</groupId>
|
||||
<artifactId>maven-compiler-plugin</artifactId>
|
||||
<configuration>
|
||||
<annotationProcessors>
|
||||
<annotationProcessor>lombok.launch.AnnotationProcessorHider$AnnotationProcessor</annotationProcessor>
|
||||
<annotationProcessor>com.dslplatform.json.processor.CompiledJsonAnnotationProcessor</annotationProcessor>
|
||||
</annotationProcessors>
|
||||
<annotationProcessorPaths>
|
||||
<path>
|
||||
<groupId>org.projectlombok</groupId>
|
||||
<artifactId>lombok</artifactId>
|
||||
<version>${lombok.version}</version>
|
||||
</path>
|
||||
</annotationProcessorPaths>
|
||||
</configuration>
|
||||
</plugin>
|
||||
</plugins>
|
||||
|
||||
@@ -6,7 +6,7 @@
|
||||
<parent>
|
||||
<artifactId>redaction-service-v1</artifactId>
|
||||
<groupId>com.iqser.red.service</groupId>
|
||||
<version>1.0-SNAPSHOT</version>
|
||||
<version>4.0-SNAPSHOT</version>
|
||||
</parent>
|
||||
|
||||
<artifactId>redaction-service-server-v1</artifactId>
|
||||
@@ -14,10 +14,10 @@
|
||||
<properties>
|
||||
<drools.version>7.73.0.Final</drools.version>
|
||||
<kie.version>7.73.0.Final</kie.version>
|
||||
<locationtech.version>1.18.2</locationtech.version>
|
||||
<javaassist.version>3.28.0-GA</javaassist.version>
|
||||
<locationtech.version>1.19.0</locationtech.version>
|
||||
<javaassist.version>3.29.2-GA</javaassist.version>
|
||||
<ahocorasick.version>0.6.3</ahocorasick.version>
|
||||
<jackson.version>2.13.2</jackson.version>
|
||||
<jackson.version>2.14.2</jackson.version>
|
||||
</properties>
|
||||
|
||||
<dependencies>
|
||||
@@ -30,6 +30,7 @@
|
||||
<dependency>
|
||||
<groupId>com.iqser.red.commons</groupId>
|
||||
<artifactId>storage-commons</artifactId>
|
||||
<version>2.1.0</version>
|
||||
</dependency>
|
||||
|
||||
<dependency>
|
||||
@@ -134,10 +135,13 @@
|
||||
<groupId>org.apache.maven.plugins</groupId>
|
||||
<artifactId>maven-compiler-plugin</artifactId>
|
||||
<configuration>
|
||||
<annotationProcessors>
|
||||
<annotationProcessor>lombok.launch.AnnotationProcessorHider$AnnotationProcessor</annotationProcessor>
|
||||
<annotationProcessor>com.dslplatform.json.processor.CompiledJsonAnnotationProcessor</annotationProcessor>
|
||||
</annotationProcessors>
|
||||
<annotationProcessorPaths>
|
||||
<path>
|
||||
<groupId>org.projectlombok</groupId>
|
||||
<artifactId>lombok</artifactId>
|
||||
<version>${lombok.version}</version>
|
||||
</path>
|
||||
</annotationProcessorPaths>
|
||||
</configuration>
|
||||
</plugin>
|
||||
|
||||
|
||||
+2
-2
@@ -9,17 +9,17 @@ import org.springframework.cloud.openfeign.EnableFeignClients;
|
||||
import org.springframework.context.annotation.Bean;
|
||||
import org.springframework.context.annotation.Import;
|
||||
|
||||
import com.iqser.red.commons.spring.DefaultWebMvcConfiguration;
|
||||
import com.iqser.red.service.redaction.v1.server.client.RulesClient;
|
||||
import com.iqser.red.service.redaction.v1.server.multitenancy.AsyncConfig;
|
||||
import com.iqser.red.service.redaction.v1.server.multitenancy.MultiTenancyMessagingConfiguration;
|
||||
import com.iqser.red.service.redaction.v1.server.multitenancy.MultiTenancyWebConfiguration;
|
||||
import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
|
||||
import com.iqser.red.storage.commons.StorageAutoConfiguration;
|
||||
|
||||
import io.micrometer.core.aop.TimedAspect;
|
||||
import io.micrometer.core.instrument.MeterRegistry;
|
||||
|
||||
@Import({MultiTenancyWebConfiguration.class, AsyncConfig.class, MultiTenancyMessagingConfiguration.class})
|
||||
@Import({MultiTenancyWebConfiguration.class, AsyncConfig.class, MultiTenancyMessagingConfiguration.class, MetricsConfiguration.class, StorageAutoConfiguration.class})
|
||||
@EnableFeignClients(basePackageClasses = RulesClient.class)
|
||||
@EnableConfigurationProperties(RedactionServiceSettings.class)
|
||||
@SpringBootApplication(exclude = {SecurityAutoConfiguration.class, ManagementWebSecurityAutoConfiguration.class})
|
||||
|
||||
+26
@@ -0,0 +1,26 @@
|
||||
package com.iqser.red.service.redaction.v1.server;
|
||||
|
||||
import org.springframework.beans.factory.annotation.Qualifier;
|
||||
import org.springframework.context.annotation.Bean;
|
||||
import org.springframework.context.annotation.Configuration;
|
||||
import org.springframework.context.annotation.Import;
|
||||
|
||||
import com.iqser.gin4.commons.metrics.MetricCommonsConfiguration;
|
||||
import com.iqser.gin4.commons.metrics.meters.FunctionTimerFactory;
|
||||
import com.iqser.gin4.commons.metrics.meters.FunctionTimerValues;
|
||||
|
||||
@Configuration
|
||||
@Import({MetricCommonsConfiguration.class})
|
||||
public class MetricsConfiguration {
|
||||
|
||||
private static final String REDACTMANAGER_ANALYZE_PAGEWISE_METRIC_NAME = "redactmanager_analyze.pagewise";
|
||||
|
||||
|
||||
@Bean
|
||||
@Qualifier(REDACTMANAGER_ANALYZE_PAGEWISE_METRIC_NAME)
|
||||
public FunctionTimerValues redactmanagerAnalyzePagewise(FunctionTimerFactory factory) {
|
||||
|
||||
return factory.create(REDACTMANAGER_ANALYZE_PAGEWISE_METRIC_NAME);
|
||||
}
|
||||
|
||||
}
|
||||
-2
@@ -1,6 +1,5 @@
|
||||
package com.iqser.red.service.redaction.v1.server.classification.model;
|
||||
|
||||
import com.dslplatform.json.JsonAttribute;
|
||||
import com.fasterxml.jackson.annotation.JsonIgnore;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
|
||||
|
||||
@@ -17,7 +16,6 @@ public class Footer {
|
||||
|
||||
|
||||
@JsonIgnore
|
||||
@JsonAttribute(ignore = true)
|
||||
public SearchableText getSearchableText() {
|
||||
|
||||
SearchableText searchableText = new SearchableText();
|
||||
|
||||
-2
@@ -1,6 +1,5 @@
|
||||
package com.iqser.red.service.redaction.v1.server.classification.model;
|
||||
|
||||
import com.dslplatform.json.JsonAttribute;
|
||||
import com.fasterxml.jackson.annotation.JsonIgnore;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
|
||||
|
||||
@@ -17,7 +16,6 @@ public class Header {
|
||||
|
||||
|
||||
@JsonIgnore
|
||||
@JsonAttribute(ignore = true)
|
||||
public SearchableText getSearchableText() {
|
||||
|
||||
SearchableText searchableText = new SearchableText();
|
||||
|
||||
+7
-6
@@ -1,7 +1,12 @@
|
||||
package com.iqser.red.service.redaction.v1.server.classification.model;
|
||||
|
||||
import com.dslplatform.json.CompiledJson;
|
||||
import com.dslplatform.json.JsonAttribute;
|
||||
import java.util.ArrayList;
|
||||
import java.util.HashMap;
|
||||
import java.util.HashSet;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
import java.util.Set;
|
||||
|
||||
import com.fasterxml.jackson.annotation.JsonIgnore;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.redactionlog.section.SectionArea;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.CellValue;
|
||||
@@ -13,11 +18,8 @@ import lombok.Builder;
|
||||
import lombok.Data;
|
||||
import lombok.NoArgsConstructor;
|
||||
|
||||
import java.util.*;
|
||||
|
||||
@Data
|
||||
@Builder
|
||||
@CompiledJson
|
||||
@NoArgsConstructor
|
||||
@AllArgsConstructor
|
||||
public class SectionText {
|
||||
@@ -48,7 +50,6 @@ public class SectionText {
|
||||
|
||||
|
||||
@JsonIgnore
|
||||
@JsonAttribute(ignore = true)
|
||||
public SearchableText getSearchableText() {
|
||||
|
||||
SearchableText searchableText = new SearchableText();
|
||||
|
||||
-2
@@ -1,6 +1,5 @@
|
||||
package com.iqser.red.service.redaction.v1.server.classification.model;
|
||||
|
||||
import com.dslplatform.json.CompiledJson;
|
||||
|
||||
import lombok.AllArgsConstructor;
|
||||
import lombok.Builder;
|
||||
@@ -9,7 +8,6 @@ import lombok.NoArgsConstructor;
|
||||
|
||||
@Data
|
||||
@Builder
|
||||
@CompiledJson
|
||||
@NoArgsConstructor
|
||||
@AllArgsConstructor
|
||||
public class SimplifiedSectionText {
|
||||
|
||||
-3
@@ -3,8 +3,6 @@ package com.iqser.red.service.redaction.v1.server.classification.model;
|
||||
import java.util.ArrayList;
|
||||
import java.util.List;
|
||||
|
||||
import com.dslplatform.json.CompiledJson;
|
||||
|
||||
import lombok.AllArgsConstructor;
|
||||
import lombok.Builder;
|
||||
import lombok.Data;
|
||||
@@ -12,7 +10,6 @@ import lombok.NoArgsConstructor;
|
||||
|
||||
@Data
|
||||
@Builder
|
||||
@CompiledJson
|
||||
@NoArgsConstructor
|
||||
@AllArgsConstructor
|
||||
public class SimplifiedText {
|
||||
|
||||
-2
@@ -1,6 +1,5 @@
|
||||
package com.iqser.red.service.redaction.v1.server.classification.model;
|
||||
|
||||
import com.dslplatform.json.CompiledJson;
|
||||
|
||||
import lombok.AllArgsConstructor;
|
||||
import lombok.Data;
|
||||
@@ -10,7 +9,6 @@ import java.util.ArrayList;
|
||||
import java.util.List;
|
||||
|
||||
@Data
|
||||
@CompiledJson
|
||||
@NoArgsConstructor
|
||||
@AllArgsConstructor
|
||||
public class Text {
|
||||
|
||||
-11
@@ -3,8 +3,6 @@ package com.iqser.red.service.redaction.v1.server.classification.model;
|
||||
import java.util.ArrayList;
|
||||
import java.util.List;
|
||||
|
||||
import com.dslplatform.json.CompiledJson;
|
||||
import com.dslplatform.json.JsonAttribute;
|
||||
import com.fasterxml.jackson.annotation.JsonIgnore;
|
||||
import com.iqser.red.service.redaction.v1.server.parsing.model.TextDirection;
|
||||
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
|
||||
@@ -19,7 +17,6 @@ import lombok.NoArgsConstructor;
|
||||
@AllArgsConstructor
|
||||
@Builder
|
||||
@Data
|
||||
@CompiledJson
|
||||
@NoArgsConstructor
|
||||
public class TextBlock extends AbstractTextContainer {
|
||||
|
||||
@@ -52,7 +49,6 @@ public class TextBlock extends AbstractTextContainer {
|
||||
|
||||
|
||||
@JsonIgnore
|
||||
@JsonAttribute(ignore = true)
|
||||
public TextDirection getDir() {
|
||||
|
||||
return sequences.get(0).getDir();
|
||||
@@ -60,7 +56,6 @@ public class TextBlock extends AbstractTextContainer {
|
||||
|
||||
|
||||
@JsonIgnore
|
||||
@JsonAttribute(ignore = true)
|
||||
private float getPageHeight() {
|
||||
|
||||
return sequences.get(0).getPageHeight();
|
||||
@@ -68,7 +63,6 @@ public class TextBlock extends AbstractTextContainer {
|
||||
|
||||
|
||||
@JsonIgnore
|
||||
@JsonAttribute(ignore = true)
|
||||
private float getPageWidth() {
|
||||
|
||||
return sequences.get(0).getPageWidth();
|
||||
@@ -86,7 +80,6 @@ public class TextBlock extends AbstractTextContainer {
|
||||
* @return the minX value in pdf coordinate system
|
||||
*/
|
||||
@JsonIgnore
|
||||
@JsonAttribute(ignore = true)
|
||||
public float getPdfMinX() {
|
||||
|
||||
if (getDir().getDegrees() == 90) {
|
||||
@@ -113,7 +106,6 @@ public class TextBlock extends AbstractTextContainer {
|
||||
* @return the maxX value in pdf coordinate system
|
||||
*/
|
||||
@JsonIgnore
|
||||
@JsonAttribute(ignore = true)
|
||||
public float getPdfMaxX() {
|
||||
|
||||
if (getDir().getDegrees() == 90) {
|
||||
@@ -140,7 +132,6 @@ public class TextBlock extends AbstractTextContainer {
|
||||
* @return the minY value in pdf coordinate system
|
||||
*/
|
||||
@JsonIgnore
|
||||
@JsonAttribute(ignore = true)
|
||||
public float getPdfMinY() {
|
||||
|
||||
if (getDir().getDegrees() == 90) {
|
||||
@@ -168,7 +159,6 @@ public class TextBlock extends AbstractTextContainer {
|
||||
* @return the maxY value in pdf coordinate system
|
||||
*/
|
||||
@JsonIgnore
|
||||
@JsonAttribute(ignore = true)
|
||||
public float getPdfMaxY() {
|
||||
|
||||
if (getDir().getDegrees() == 90) {
|
||||
@@ -288,7 +278,6 @@ public class TextBlock extends AbstractTextContainer {
|
||||
|
||||
@Override
|
||||
@JsonIgnore
|
||||
@JsonAttribute(ignore = true)
|
||||
public String getText() {
|
||||
|
||||
StringBuilder sb = new StringBuilder();
|
||||
|
||||
-2
@@ -1,6 +1,5 @@
|
||||
package com.iqser.red.service.redaction.v1.server.classification.model;
|
||||
|
||||
import com.dslplatform.json.JsonAttribute;
|
||||
import com.fasterxml.jackson.annotation.JsonIgnore;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
|
||||
|
||||
@@ -17,7 +16,6 @@ public class UnclassifiedText {
|
||||
|
||||
|
||||
@JsonIgnore
|
||||
@JsonAttribute(ignore = true)
|
||||
public SearchableText getSearchableText() {
|
||||
|
||||
SearchableText searchableText = new SearchableText();
|
||||
|
||||
-2
@@ -1,6 +1,5 @@
|
||||
package com.iqser.red.service.redaction.v1.server.client.model;
|
||||
|
||||
import com.dslplatform.json.CompiledJson;
|
||||
|
||||
import lombok.AllArgsConstructor;
|
||||
import lombok.Builder;
|
||||
@@ -9,7 +8,6 @@ import lombok.NoArgsConstructor;
|
||||
|
||||
@Data
|
||||
@Builder
|
||||
@CompiledJson
|
||||
@AllArgsConstructor
|
||||
@NoArgsConstructor
|
||||
public class EntityRecogintionEntity {
|
||||
|
||||
-2
@@ -4,14 +4,12 @@ import java.util.HashMap;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
|
||||
import com.dslplatform.json.CompiledJson;
|
||||
|
||||
import lombok.AllArgsConstructor;
|
||||
import lombok.Data;
|
||||
import lombok.NoArgsConstructor;
|
||||
|
||||
@Data
|
||||
@CompiledJson
|
||||
@NoArgsConstructor
|
||||
@AllArgsConstructor
|
||||
public class NerEntities {
|
||||
|
||||
+1
-1
@@ -6,7 +6,6 @@ import java.security.SecureRandom;
|
||||
import java.security.spec.KeySpec;
|
||||
import java.util.Base64;
|
||||
|
||||
import javax.annotation.PostConstruct;
|
||||
import javax.crypto.Cipher;
|
||||
import javax.crypto.SecretKey;
|
||||
import javax.crypto.SecretKeyFactory;
|
||||
@@ -17,6 +16,7 @@ import javax.crypto.spec.SecretKeySpec;
|
||||
import org.springframework.beans.factory.annotation.Value;
|
||||
import org.springframework.stereotype.Service;
|
||||
|
||||
import jakarta.annotation.PostConstruct;
|
||||
import lombok.SneakyThrows;
|
||||
|
||||
@Service
|
||||
|
||||
-6
@@ -3,8 +3,6 @@ package com.iqser.red.service.redaction.v1.server.parsing.model;
|
||||
import org.apache.pdfbox.text.TextPosition;
|
||||
import org.springframework.beans.BeanUtils;
|
||||
|
||||
import com.dslplatform.json.CompiledJson;
|
||||
import com.dslplatform.json.JsonAttribute;
|
||||
import com.fasterxml.jackson.annotation.JsonIgnore;
|
||||
|
||||
import lombok.AllArgsConstructor;
|
||||
@@ -17,7 +15,6 @@ import lombok.SneakyThrows;
|
||||
@Builder
|
||||
@NoArgsConstructor
|
||||
@AllArgsConstructor
|
||||
@CompiledJson
|
||||
public class RedTextPosition {
|
||||
|
||||
private String textMatrix;
|
||||
@@ -39,17 +36,14 @@ public class RedTextPosition {
|
||||
|
||||
// not used in reanalysis
|
||||
@JsonIgnore
|
||||
@JsonAttribute(ignore = true)
|
||||
private float widthOfSpace;
|
||||
|
||||
// not used in reanalysis
|
||||
@JsonIgnore
|
||||
@JsonAttribute(ignore = true)
|
||||
private float fontSizeInPt;
|
||||
|
||||
// not used in reanalysis
|
||||
@JsonIgnore
|
||||
@JsonAttribute(ignore = true)
|
||||
private String fontName;
|
||||
|
||||
|
||||
|
||||
-7
@@ -35,13 +35,6 @@ public enum TextDirection {
|
||||
}
|
||||
|
||||
|
||||
@com.dslplatform.json.JsonValue
|
||||
public float jsonValue() {
|
||||
|
||||
return getDegrees();
|
||||
}
|
||||
|
||||
|
||||
@JsonCreator(mode = JsonCreator.Mode.DELEGATING)
|
||||
public static TextDirection fromDegrees(float degrees) {
|
||||
|
||||
|
||||
-15
@@ -8,8 +8,6 @@ import java.util.stream.Collectors;
|
||||
|
||||
import org.apache.pdfbox.text.TextPosition;
|
||||
|
||||
import com.dslplatform.json.CompiledJson;
|
||||
import com.dslplatform.json.JsonAttribute;
|
||||
import com.fasterxml.jackson.annotation.JsonIgnore;
|
||||
import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.redactionlog.Point;
|
||||
@@ -25,7 +23,6 @@ import lombok.extern.slf4j.Slf4j;
|
||||
@Slf4j
|
||||
@Data
|
||||
@Builder
|
||||
@CompiledJson
|
||||
@NoArgsConstructor
|
||||
@AllArgsConstructor
|
||||
@JsonIgnoreProperties({"empty"})
|
||||
@@ -144,7 +141,6 @@ public class TextPositionSequence implements CharSequence {
|
||||
* @return the text direction adjusted minX value
|
||||
*/
|
||||
@JsonIgnore
|
||||
@JsonAttribute(ignore = true)
|
||||
public float getMinXDirAdj() {
|
||||
|
||||
return textPositions.get(0).getXDirAdj();
|
||||
@@ -159,7 +155,6 @@ public class TextPositionSequence implements CharSequence {
|
||||
* @return the text direction adjusted maxX value
|
||||
*/
|
||||
@JsonIgnore
|
||||
@JsonAttribute(ignore = true)
|
||||
public float getMaxXDirAdj() {
|
||||
|
||||
return textPositions.get(textPositions.size() - 1).getXDirAdj() + textPositions.get(textPositions.size() - 1).getWidthDirAdj() + HEIGHT_PADDING;
|
||||
@@ -174,7 +169,6 @@ public class TextPositionSequence implements CharSequence {
|
||||
* @return the text direction adjusted minY value. The upper border of the bounding box of the word.
|
||||
*/
|
||||
@JsonIgnore
|
||||
@JsonAttribute(ignore = true)
|
||||
public float getMinYDirAdj() {
|
||||
|
||||
return textPositions.get(0).getYDirAdj() - getTextHeight();
|
||||
@@ -189,7 +183,6 @@ public class TextPositionSequence implements CharSequence {
|
||||
* @return the text direction adjusted maxY value. The lower border of the bounding box of the word.
|
||||
*/
|
||||
@JsonIgnore
|
||||
@JsonAttribute(ignore = true)
|
||||
public float getMaxYDirAdj() {
|
||||
|
||||
return textPositions.get(0).getYDirAdj();
|
||||
@@ -198,7 +191,6 @@ public class TextPositionSequence implements CharSequence {
|
||||
|
||||
|
||||
@JsonIgnore
|
||||
@JsonAttribute(ignore = true)
|
||||
public float getTextHeight() {
|
||||
|
||||
return textPositions.get(0).getHeightDir() + HEIGHT_PADDING;
|
||||
@@ -206,7 +198,6 @@ public class TextPositionSequence implements CharSequence {
|
||||
|
||||
|
||||
@JsonIgnore
|
||||
@JsonAttribute(ignore = true)
|
||||
public float getHeight() {
|
||||
|
||||
return getMaxYDirAdj() - getMinYDirAdj();
|
||||
@@ -214,7 +205,6 @@ public class TextPositionSequence implements CharSequence {
|
||||
|
||||
|
||||
@JsonIgnore
|
||||
@JsonAttribute(ignore = true)
|
||||
public float getWidth() {
|
||||
|
||||
return getMaxXDirAdj() - getMinXDirAdj();
|
||||
@@ -222,7 +212,6 @@ public class TextPositionSequence implements CharSequence {
|
||||
|
||||
|
||||
@JsonIgnore
|
||||
@JsonAttribute(ignore = true)
|
||||
public String getFont() {
|
||||
|
||||
return textPositions.get(0).getFontName().toLowerCase().replaceAll(",bold", "").replaceAll(",italic", "");
|
||||
@@ -230,7 +219,6 @@ public class TextPositionSequence implements CharSequence {
|
||||
|
||||
|
||||
@JsonIgnore
|
||||
@JsonAttribute(ignore = true)
|
||||
public String getFontStyle() {
|
||||
|
||||
String lowercaseFontName = textPositions.get(0).getFontName().toLowerCase();
|
||||
@@ -249,7 +237,6 @@ public class TextPositionSequence implements CharSequence {
|
||||
|
||||
|
||||
@JsonIgnore
|
||||
@JsonAttribute(ignore = true)
|
||||
public float getFontSize() {
|
||||
|
||||
return textPositions.get(0).getFontSizeInPt();
|
||||
@@ -257,7 +244,6 @@ public class TextPositionSequence implements CharSequence {
|
||||
|
||||
|
||||
@JsonIgnore
|
||||
@JsonAttribute(ignore = true)
|
||||
public float getSpaceWidth() {
|
||||
|
||||
return textPositions.get(0).getWidthOfSpace();
|
||||
@@ -274,7 +260,6 @@ public class TextPositionSequence implements CharSequence {
|
||||
* @return bounding box of the word in Pdf Coordinate System
|
||||
*/
|
||||
@JsonIgnore
|
||||
@JsonAttribute(ignore = true)
|
||||
@SneakyThrows
|
||||
public Rectangle getRectangle() {
|
||||
|
||||
|
||||
-2
@@ -1,6 +1,5 @@
|
||||
package com.iqser.red.service.redaction.v1.server.redaction.model;
|
||||
|
||||
import com.dslplatform.json.CompiledJson;
|
||||
|
||||
import lombok.AllArgsConstructor;
|
||||
import lombok.Builder;
|
||||
@@ -9,7 +8,6 @@ import lombok.NoArgsConstructor;
|
||||
|
||||
@Data
|
||||
@Builder
|
||||
@CompiledJson
|
||||
@NoArgsConstructor
|
||||
@AllArgsConstructor
|
||||
public class Image implements ReasonHolder {
|
||||
|
||||
-4
@@ -1,7 +1,5 @@
|
||||
package com.iqser.red.service.redaction.v1.server.redaction.model;
|
||||
|
||||
import com.dslplatform.json.CompiledJson;
|
||||
import com.dslplatform.json.JsonAttribute;
|
||||
import com.fasterxml.jackson.annotation.JsonIgnore;
|
||||
|
||||
import lombok.AllArgsConstructor;
|
||||
@@ -11,7 +9,6 @@ import lombok.NoArgsConstructor;
|
||||
|
||||
@Data
|
||||
@Builder
|
||||
@CompiledJson
|
||||
@NoArgsConstructor
|
||||
@AllArgsConstructor
|
||||
public class RedRectangle2D {
|
||||
@@ -25,7 +22,6 @@ public class RedRectangle2D {
|
||||
|
||||
|
||||
@JsonIgnore
|
||||
@JsonAttribute(ignore = true)
|
||||
public boolean isEmpty() {
|
||||
|
||||
return width <= 0.0f || height <= 0.0f;
|
||||
|
||||
-2
@@ -1,6 +1,5 @@
|
||||
package com.iqser.red.service.redaction.v1.server.redaction.model;
|
||||
|
||||
import com.dslplatform.json.JsonAttribute;
|
||||
import com.fasterxml.jackson.annotation.JsonIgnore;
|
||||
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.utils.IdBuilder;
|
||||
@@ -18,7 +17,6 @@ import lombok.Getter;
|
||||
public class SearchableText {
|
||||
|
||||
@JsonIgnore
|
||||
@JsonAttribute(ignore = true)
|
||||
private transient String stringRepresentation;
|
||||
@Getter
|
||||
private final List<TextPositionSequence> sequences = new ArrayList<>();
|
||||
|
||||
+15
@@ -0,0 +1,15 @@
|
||||
package com.iqser.red.service.redaction.v1.server.redaction.model;
|
||||
|
||||
import java.util.HashMap;
|
||||
import java.util.Map;
|
||||
|
||||
import lombok.Data;
|
||||
import lombok.NoArgsConstructor;
|
||||
|
||||
@Data
|
||||
@NoArgsConstructor
|
||||
public class TenantDictionary {
|
||||
|
||||
private final Map<String, DictionaryRepresentation> dictionariesByDossierTemplate = new HashMap<>();
|
||||
private final Map<String, DictionaryRepresentation> dictionariesByDossier = new HashMap<>();
|
||||
}
|
||||
+15
@@ -0,0 +1,15 @@
|
||||
package com.iqser.red.service.redaction.v1.server.redaction.model;
|
||||
|
||||
import java.util.HashMap;
|
||||
import java.util.Map;
|
||||
|
||||
import lombok.Data;
|
||||
import lombok.NoArgsConstructor;
|
||||
|
||||
@Data
|
||||
@NoArgsConstructor
|
||||
public class TenantRules {
|
||||
|
||||
private Map<String, Long> rulesVersionPerDossierTemplateId = new HashMap<>();
|
||||
|
||||
}
|
||||
-2
@@ -3,12 +3,10 @@ package com.iqser.red.service.redaction.v1.server.redaction.model.image;
|
||||
import java.util.HashMap;
|
||||
import java.util.Map;
|
||||
|
||||
import com.dslplatform.json.CompiledJson;
|
||||
|
||||
import lombok.Data;
|
||||
|
||||
@Data
|
||||
@CompiledJson
|
||||
public class Classification {
|
||||
|
||||
private Map<String, Float> probabilities = new HashMap<>();
|
||||
|
||||
-2
@@ -1,11 +1,9 @@
|
||||
package com.iqser.red.service.redaction.v1.server.redaction.model.image;
|
||||
|
||||
import com.dslplatform.json.CompiledJson;
|
||||
|
||||
import lombok.Data;
|
||||
|
||||
@Data
|
||||
@CompiledJson
|
||||
public class FilterGeometry {
|
||||
|
||||
private ImageSize imageSize;
|
||||
|
||||
-2
@@ -1,11 +1,9 @@
|
||||
package com.iqser.red.service.redaction.v1.server.redaction.model.image;
|
||||
|
||||
import com.dslplatform.json.CompiledJson;
|
||||
|
||||
import lombok.Data;
|
||||
|
||||
@Data
|
||||
@CompiledJson
|
||||
public class Filters {
|
||||
|
||||
private FilterGeometry geometry;
|
||||
|
||||
-2
@@ -1,11 +1,9 @@
|
||||
package com.iqser.red.service.redaction.v1.server.redaction.model.image;
|
||||
|
||||
import com.dslplatform.json.CompiledJson;
|
||||
|
||||
import lombok.Data;
|
||||
|
||||
@Data
|
||||
@CompiledJson
|
||||
public class Geometry {
|
||||
|
||||
private float width;
|
||||
|
||||
-2
@@ -1,11 +1,9 @@
|
||||
package com.iqser.red.service.redaction.v1.server.redaction.model.image;
|
||||
|
||||
import com.dslplatform.json.CompiledJson;
|
||||
|
||||
import lombok.Data;
|
||||
|
||||
@Data
|
||||
@CompiledJson
|
||||
public class ImageFormat {
|
||||
|
||||
private float quotient;
|
||||
|
||||
-2
@@ -1,11 +1,9 @@
|
||||
package com.iqser.red.service.redaction.v1.server.redaction.model.image;
|
||||
|
||||
import com.dslplatform.json.CompiledJson;
|
||||
|
||||
import lombok.Data;
|
||||
|
||||
@Data
|
||||
@CompiledJson
|
||||
public class ImageMetadata {
|
||||
|
||||
private Classification classification;
|
||||
|
||||
-5
@@ -1,7 +1,5 @@
|
||||
package com.iqser.red.service.redaction.v1.server.redaction.model.image;
|
||||
|
||||
import com.dslplatform.json.CompiledJson;
|
||||
import com.dslplatform.json.JsonAttribute;
|
||||
import com.fasterxml.jackson.annotation.JsonAlias;
|
||||
import com.fasterxml.jackson.annotation.JsonProperty;
|
||||
|
||||
@@ -11,7 +9,6 @@ import java.util.ArrayList;
|
||||
import java.util.List;
|
||||
|
||||
@Data
|
||||
@CompiledJson
|
||||
public class ImageServiceResponse {
|
||||
|
||||
private String dossierId;
|
||||
@@ -19,7 +16,6 @@ public class ImageServiceResponse {
|
||||
|
||||
@JsonProperty(value = "imageMetadata")
|
||||
@JsonAlias("data")
|
||||
@JsonAttribute(alternativeNames = {"imageMetadata"})
|
||||
private List<ImageMetadata> data = new ArrayList<>();
|
||||
|
||||
private List<ImageMetadata> dataCV = new ArrayList<>();
|
||||
@@ -27,7 +23,6 @@ public class ImageServiceResponse {
|
||||
|
||||
@JsonProperty(value = "imageMetadata")
|
||||
@JsonAlias("data")
|
||||
@JsonAttribute(alternativeNames = {"imageMetadata"})
|
||||
public void setData(List<ImageMetadata> data) {this.data = data;}
|
||||
|
||||
}
|
||||
|
||||
-3
@@ -1,11 +1,8 @@
|
||||
package com.iqser.red.service.redaction.v1.server.redaction.model.image;
|
||||
|
||||
import com.dslplatform.json.CompiledJson;
|
||||
|
||||
import lombok.Data;
|
||||
|
||||
@Data
|
||||
@CompiledJson
|
||||
public class ImageSize {
|
||||
|
||||
private float quotient;
|
||||
|
||||
-2
@@ -1,11 +1,9 @@
|
||||
package com.iqser.red.service.redaction.v1.server.redaction.model.image;
|
||||
|
||||
import com.dslplatform.json.CompiledJson;
|
||||
|
||||
import lombok.Data;
|
||||
|
||||
@Data
|
||||
@CompiledJson
|
||||
public class Position {
|
||||
|
||||
private float x1;
|
||||
|
||||
-2
@@ -1,11 +1,9 @@
|
||||
package com.iqser.red.service.redaction.v1.server.redaction.model.image;
|
||||
|
||||
import com.dslplatform.json.CompiledJson;
|
||||
|
||||
import lombok.Data;
|
||||
|
||||
@Data
|
||||
@CompiledJson
|
||||
public class Probability {
|
||||
|
||||
private boolean unconfident;
|
||||
|
||||
-2
@@ -1,11 +1,9 @@
|
||||
package com.iqser.red.service.redaction.v1.server.redaction.model.table;
|
||||
|
||||
import com.dslplatform.json.CompiledJson;
|
||||
|
||||
import lombok.Data;
|
||||
|
||||
@Data
|
||||
@CompiledJson
|
||||
public class PageInfo {
|
||||
|
||||
private int number;
|
||||
|
||||
-2
@@ -1,11 +1,9 @@
|
||||
package com.iqser.red.service.redaction.v1.server.redaction.model.table;
|
||||
|
||||
import com.dslplatform.json.CompiledJson;
|
||||
|
||||
import lombok.Data;
|
||||
|
||||
@Data
|
||||
@CompiledJson
|
||||
public class TableCells {
|
||||
|
||||
private float x0;
|
||||
|
||||
-2
@@ -3,12 +3,10 @@ package com.iqser.red.service.redaction.v1.server.redaction.model.table;
|
||||
import java.util.ArrayList;
|
||||
import java.util.List;
|
||||
|
||||
import com.dslplatform.json.CompiledJson;
|
||||
|
||||
import lombok.Data;
|
||||
|
||||
@Data
|
||||
@CompiledJson
|
||||
public class TableData {
|
||||
|
||||
private PageInfo pageInfo;
|
||||
|
||||
-2
@@ -3,12 +3,10 @@ package com.iqser.red.service.redaction.v1.server.redaction.model.table;
|
||||
import java.util.ArrayList;
|
||||
import java.util.List;
|
||||
|
||||
import com.dslplatform.json.CompiledJson;
|
||||
|
||||
import lombok.Data;
|
||||
|
||||
@Data
|
||||
@CompiledJson
|
||||
public class TableServiceResponse {
|
||||
|
||||
private String dossierId;
|
||||
|
||||
+109
-32
@@ -1,24 +1,43 @@
|
||||
package com.iqser.red.service.redaction.v1.server.redaction.service;
|
||||
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.dossiertemplate.configuration.Colors;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.dossiertemplate.type.DictionaryEntry;
|
||||
import com.iqser.red.service.redaction.v1.server.client.DictionaryClient;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.*;
|
||||
|
||||
import feign.FeignException;
|
||||
import io.micrometer.core.annotation.Timed;
|
||||
import lombok.RequiredArgsConstructor;
|
||||
import lombok.extern.slf4j.Slf4j;
|
||||
import java.awt.Color;
|
||||
import java.util.ArrayList;
|
||||
import java.util.Comparator;
|
||||
import java.util.HashSet;
|
||||
import java.util.List;
|
||||
import java.util.Locale;
|
||||
import java.util.Optional;
|
||||
import java.util.Set;
|
||||
import java.util.concurrent.TimeUnit;
|
||||
import java.util.stream.Collectors;
|
||||
|
||||
import org.apache.commons.collections4.CollectionUtils;
|
||||
import org.apache.commons.lang3.SerializationUtils;
|
||||
import org.springframework.stereotype.Service;
|
||||
|
||||
import java.awt.*;
|
||||
import java.util.List;
|
||||
import java.util.*;
|
||||
import java.util.stream.Collectors;
|
||||
import com.google.common.cache.CacheBuilder;
|
||||
import com.google.common.cache.CacheLoader;
|
||||
import com.google.common.cache.LoadingCache;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.dossiertemplate.configuration.Colors;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.dossiertemplate.type.DictionaryEntry;
|
||||
import com.iqser.red.service.redaction.v1.server.client.DictionaryClient;
|
||||
import com.iqser.red.service.redaction.v1.server.multitenancy.TenantContext;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryEntries;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryIncrement;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryIncrementValue;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryModel;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryRepresentation;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryVersion;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.TenantDictionary;
|
||||
import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
|
||||
|
||||
import feign.FeignException;
|
||||
import io.micrometer.core.annotation.Timed;
|
||||
import jakarta.annotation.PostConstruct;
|
||||
import lombok.RequiredArgsConstructor;
|
||||
import lombok.SneakyThrows;
|
||||
import lombok.extern.slf4j.Slf4j;
|
||||
|
||||
@Slf4j
|
||||
@Service
|
||||
@@ -28,22 +47,39 @@ public class DictionaryService {
|
||||
private static final String DEFAULT_COLOR = "#cccccc";
|
||||
private final DictionaryClient dictionaryClient;
|
||||
|
||||
private final Map<String, DictionaryRepresentation> dictionariesByDossierTemplate = new HashMap<>();
|
||||
private final Map<String, DictionaryRepresentation> dictionariesByDossier = new HashMap<>();
|
||||
private final RedactionServiceSettings settings;
|
||||
|
||||
private LoadingCache<String, TenantDictionary> tenantDictionaryCache;
|
||||
|
||||
|
||||
@PostConstruct
|
||||
protected void createCache() {
|
||||
|
||||
tenantDictionaryCache = CacheBuilder.newBuilder()
|
||||
.maximumSize(settings.getDictionaryCacheMaximumSize())
|
||||
.expireAfterAccess(settings.getDictionaryCacheExpireAfterAccessDays(), TimeUnit.DAYS)
|
||||
.build(new CacheLoader<>() {
|
||||
public TenantDictionary load(String key) {
|
||||
|
||||
return new TenantDictionary();
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
|
||||
@SneakyThrows
|
||||
@Timed("redactmanager_updateDictionary")
|
||||
public DictionaryVersion updateDictionary(String dossierTemplateId, String dossierId) {
|
||||
|
||||
log.info("Updating dictionary data for dossierTemplate {} and dossier {}", dossierTemplateId, dossierId);
|
||||
long dossierTemplateDictionaryVersion = dictionaryClient.getVersion(dossierTemplateId);
|
||||
var dossierTemplateDictionary = dictionariesByDossierTemplate.get(dossierTemplateId);
|
||||
var dossierTemplateDictionary = getDossierTemplateDictionary(dossierTemplateId);
|
||||
if (dossierTemplateDictionary == null || dossierTemplateDictionaryVersion > dossierTemplateDictionary.getDictionaryVersion()) {
|
||||
updateDictionaryEntry(dossierTemplateId, dossierTemplateDictionaryVersion, getVersion(dossierTemplateDictionary), null);
|
||||
}
|
||||
|
||||
long dossierDictionaryVersion = dictionaryClient.getVersionForDossier(dossierId);
|
||||
var dossierDictionary = dictionariesByDossier.get(dossierId);
|
||||
var dossierDictionary = getDossierDictionary(dossierId);
|
||||
if (dossierDictionary == null || dossierDictionaryVersion > dossierDictionary.getDictionaryVersion()) {
|
||||
updateDictionaryEntry(dossierTemplateId, dossierDictionaryVersion, getVersion(dossierDictionary), dossierId);
|
||||
}
|
||||
@@ -52,13 +88,14 @@ public class DictionaryService {
|
||||
}
|
||||
|
||||
|
||||
@SneakyThrows
|
||||
@Timed("redactmanager_getDictionaryIncrements")
|
||||
public DictionaryIncrement getDictionaryIncrements(String dossierTemplateId, DictionaryVersion fromVersion, String dossierId) {
|
||||
|
||||
DictionaryVersion version = updateDictionary(dossierTemplateId, dossierId);
|
||||
|
||||
Set<DictionaryIncrementValue> newValues = new HashSet<>();
|
||||
List<DictionaryModel> dictionaryModels = dictionariesByDossierTemplate.get(dossierTemplateId).getDictionary();
|
||||
List<DictionaryModel> dictionaryModels = getDossierTemplateDictionary(dossierTemplateId).getDictionary();
|
||||
dictionaryModels.forEach(dictionaryModel -> {
|
||||
dictionaryModel.getEntries().forEach(dictionaryEntry -> {
|
||||
if (dictionaryEntry.getVersion() > fromVersion.getDossierTemplateVersion()) {
|
||||
@@ -77,8 +114,8 @@ public class DictionaryService {
|
||||
});
|
||||
});
|
||||
|
||||
if (dictionariesByDossier.containsKey(dossierId)) {
|
||||
dictionaryModels = dictionariesByDossier.get(dossierId).getDictionary();
|
||||
if (dossierDictionaryExists(dossierId)) {
|
||||
dictionaryModels = getDossierDictionary(dossierId).getDictionary();
|
||||
dictionaryModels.forEach(dictionaryModel -> {
|
||||
dictionaryModel.getEntries().forEach(dictionaryEntry -> {
|
||||
if (dictionaryEntry.getVersion() > fromVersion.getDossierVersion()) {
|
||||
@@ -102,6 +139,7 @@ public class DictionaryService {
|
||||
}
|
||||
|
||||
|
||||
@SneakyThrows
|
||||
private void updateDictionaryEntry(String dossierTemplateId, long version, Long currentVersion, String dossierId) {
|
||||
|
||||
try {
|
||||
@@ -115,10 +153,10 @@ public class DictionaryService {
|
||||
|
||||
Optional<DictionaryModel> oldModel;
|
||||
if (dossierId == null) {
|
||||
var representation = dictionariesByDossierTemplate.get(dossierTemplateId);
|
||||
var representation = getDossierTemplateDictionary(dossierTemplateId);
|
||||
oldModel = representation != null ? representation.getDictionary().stream().filter(f -> f.getType().equals(t.getType())).findAny() : Optional.empty();
|
||||
} else {
|
||||
var representation = dictionariesByDossier.get(dossierId);
|
||||
var representation = getDossierDictionary(dossierId);
|
||||
oldModel = representation != null ? representation.getDictionary().stream().filter(f -> f.getType().equals(t.getType())).findAny() : Optional.empty();
|
||||
}
|
||||
|
||||
@@ -178,9 +216,9 @@ public class DictionaryService {
|
||||
dictionaryRepresentation.setDictionary(dictionary);
|
||||
|
||||
if (dossierId == null) {
|
||||
dictionariesByDossierTemplate.put(dossierTemplateId, dictionaryRepresentation);
|
||||
addDictionaryRepresentationForDossierTemplate(dossierTemplateId, dictionaryRepresentation);
|
||||
} else {
|
||||
dictionariesByDossier.put(dossierId, dictionaryRepresentation);
|
||||
addDictionaryRepresentationForDossier(dossierId, dictionaryRepresentation);
|
||||
}
|
||||
}
|
||||
} catch (FeignException e) {
|
||||
@@ -219,19 +257,21 @@ public class DictionaryService {
|
||||
}
|
||||
|
||||
|
||||
@SneakyThrows
|
||||
public float[] getColor(String type, String dossierTemplateId) {
|
||||
|
||||
DictionaryModel model = dictionariesByDossierTemplate.get(dossierTemplateId).getLocalAccessMap().get(type);
|
||||
DictionaryModel model = getDossierTemplateDictionary(dossierTemplateId).getLocalAccessMap().get(type);
|
||||
if (model != null) {
|
||||
return model.getColor();
|
||||
}
|
||||
return dictionariesByDossierTemplate.get(dossierTemplateId).getDefaultColor();
|
||||
return getDossierTemplateDictionary(dossierTemplateId).getDefaultColor();
|
||||
}
|
||||
|
||||
|
||||
@SneakyThrows
|
||||
public boolean isHint(String type, String dossierTemplateId) {
|
||||
|
||||
DictionaryModel model = dictionariesByDossierTemplate.get(dossierTemplateId).getLocalAccessMap().get(type);
|
||||
DictionaryModel model = getDossierTemplateDictionary(dossierTemplateId).getLocalAccessMap().get(type);
|
||||
if (model != null) {
|
||||
return model.isHint();
|
||||
}
|
||||
@@ -239,20 +279,21 @@ public class DictionaryService {
|
||||
}
|
||||
|
||||
|
||||
@SneakyThrows
|
||||
@Timed("redactmanager_getDeepCopyDictionary")
|
||||
public Dictionary getDeepCopyDictionary(String dossierTemplateId, String dossierId) {
|
||||
|
||||
List<DictionaryModel> copy = new ArrayList<>();
|
||||
|
||||
var dossierTemplateRepresentation = dictionariesByDossierTemplate.get(dossierTemplateId);
|
||||
var dossierTemplateRepresentation = getDossierTemplateDictionary(dossierTemplateId);
|
||||
dossierTemplateRepresentation.getDictionary().forEach(dm -> {
|
||||
copy.add(SerializationUtils.clone(dm));
|
||||
});
|
||||
|
||||
//TODO merge dictionaries if they have same names
|
||||
long dossierDictionaryVersion = -1;
|
||||
if (dictionariesByDossier.containsKey(dossierId)) {
|
||||
var dossierRepresentation = dictionariesByDossier.get(dossierId);
|
||||
if (dossierDictionaryExists(dossierId)) {
|
||||
var dossierRepresentation = getDossierDictionary(dossierId);
|
||||
dossierRepresentation.getDictionary().forEach(dm -> {
|
||||
copy.add(SerializationUtils.clone(dm));
|
||||
});
|
||||
@@ -264,9 +305,45 @@ public class DictionaryService {
|
||||
}
|
||||
|
||||
|
||||
@SneakyThrows
|
||||
public float[] getNotRedactedColor(String dossierTemplateId) {
|
||||
|
||||
return dictionariesByDossierTemplate.get(dossierTemplateId).getNotRedactedColor();
|
||||
return getDossierTemplateDictionary(dossierTemplateId).getNotRedactedColor();
|
||||
}
|
||||
|
||||
|
||||
@SneakyThrows
|
||||
private void addDictionaryRepresentationForDossierTemplate(String dossierTemplateId, DictionaryRepresentation dictionaryRepresentation) {
|
||||
|
||||
tenantDictionaryCache.get(TenantContext.getTenantId()).getDictionariesByDossierTemplate().put(dossierTemplateId, dictionaryRepresentation);
|
||||
}
|
||||
|
||||
|
||||
@SneakyThrows
|
||||
private void addDictionaryRepresentationForDossier(String dossierId, DictionaryRepresentation dictionaryRepresentation) {
|
||||
|
||||
tenantDictionaryCache.get(TenantContext.getTenantId()).getDictionariesByDossier().put(dossierId, dictionaryRepresentation);
|
||||
}
|
||||
|
||||
|
||||
@SneakyThrows
|
||||
private DictionaryRepresentation getDossierTemplateDictionary(String dossierTemplateId) {
|
||||
|
||||
return tenantDictionaryCache.get(TenantContext.getTenantId()).getDictionariesByDossierTemplate().get(dossierTemplateId);
|
||||
}
|
||||
|
||||
|
||||
@SneakyThrows
|
||||
private DictionaryRepresentation getDossierDictionary(String dossierId) {
|
||||
|
||||
return tenantDictionaryCache.get(TenantContext.getTenantId()).getDictionariesByDossier().get(dossierId);
|
||||
}
|
||||
|
||||
|
||||
@SneakyThrows
|
||||
private boolean dossierDictionaryExists(String dossierId) {
|
||||
|
||||
return tenantDictionaryCache.get(TenantContext.getTenantId()).getDictionariesByDossier().containsKey(dossierId);
|
||||
}
|
||||
|
||||
|
||||
|
||||
+55
-15
@@ -1,11 +1,11 @@
|
||||
package com.iqser.red.service.redaction.v1.server.redaction.service;
|
||||
|
||||
import com.iqser.red.service.redaction.v1.server.client.RulesClient;
|
||||
import com.iqser.red.service.redaction.v1.server.exception.RulesValidationException;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.Section;
|
||||
|
||||
import io.micrometer.core.annotation.Timed;
|
||||
import lombok.RequiredArgsConstructor;
|
||||
import java.io.ByteArrayInputStream;
|
||||
import java.io.InputStream;
|
||||
import java.nio.charset.StandardCharsets;
|
||||
import java.util.HashMap;
|
||||
import java.util.Map;
|
||||
import java.util.concurrent.TimeUnit;
|
||||
|
||||
import org.apache.commons.lang3.StringUtils;
|
||||
import org.kie.api.KieServices;
|
||||
@@ -16,11 +16,20 @@ import org.kie.api.runtime.KieContainer;
|
||||
import org.kie.api.runtime.KieSession;
|
||||
import org.springframework.stereotype.Service;
|
||||
|
||||
import java.io.ByteArrayInputStream;
|
||||
import java.io.InputStream;
|
||||
import java.nio.charset.StandardCharsets;
|
||||
import java.util.HashMap;
|
||||
import java.util.Map;
|
||||
import com.google.common.cache.CacheBuilder;
|
||||
import com.google.common.cache.CacheLoader;
|
||||
import com.google.common.cache.LoadingCache;
|
||||
import com.iqser.red.service.redaction.v1.server.client.RulesClient;
|
||||
import com.iqser.red.service.redaction.v1.server.exception.RulesValidationException;
|
||||
import com.iqser.red.service.redaction.v1.server.multitenancy.TenantContext;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.Section;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.TenantRules;
|
||||
import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
|
||||
|
||||
import io.micrometer.core.annotation.Timed;
|
||||
import jakarta.annotation.PostConstruct;
|
||||
import lombok.RequiredArgsConstructor;
|
||||
import lombok.SneakyThrows;
|
||||
|
||||
@Service
|
||||
@RequiredArgsConstructor
|
||||
@@ -30,7 +39,24 @@ public class DroolsExecutionService {
|
||||
|
||||
private final Map<String, KieContainer> kieContainers = new HashMap<>();
|
||||
|
||||
private final Map<String, Long> rulesVersionPerDossierTemplateId = new HashMap<>();
|
||||
private final RedactionServiceSettings settings;
|
||||
|
||||
private LoadingCache<String, TenantRules> tenantRulesCache;
|
||||
|
||||
|
||||
@PostConstruct
|
||||
protected void createCache() {
|
||||
|
||||
tenantRulesCache = CacheBuilder.newBuilder()
|
||||
.maximumSize(settings.getDictionaryCacheMaximumSize())
|
||||
.expireAfterAccess(settings.getDictionaryCacheExpireAfterAccessDays(), TimeUnit.DAYS)
|
||||
.build(new CacheLoader<>() {
|
||||
public TenantRules load(String key) {
|
||||
|
||||
return new TenantRules();
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
|
||||
public KieContainer getKieContainer(String dossierTemplateId) {
|
||||
@@ -61,13 +87,13 @@ public class DroolsExecutionService {
|
||||
public KieContainer updateRules(String dossierTemplateId) {
|
||||
|
||||
long version = rulesClient.getVersion(dossierTemplateId);
|
||||
Long rulesVersion = rulesVersionPerDossierTemplateId.get(dossierTemplateId);
|
||||
Long rulesVersion = getVersionForDossierTemplate(dossierTemplateId);
|
||||
if (rulesVersion == null) {
|
||||
rulesVersion = -1L;
|
||||
}
|
||||
|
||||
if (version > rulesVersion) {
|
||||
rulesVersionPerDossierTemplateId.put(dossierTemplateId, version);
|
||||
setRulesVersionForDossierTemplate(dossierTemplateId, version);
|
||||
return createOrUpdateKieContainer(dossierTemplateId);
|
||||
}
|
||||
return getKieContainer(dossierTemplateId);
|
||||
@@ -126,11 +152,25 @@ public class DroolsExecutionService {
|
||||
|
||||
public long getRulesVersion(String dossierTemplateId) {
|
||||
|
||||
Long rulesVersion = rulesVersionPerDossierTemplateId.get(dossierTemplateId);
|
||||
Long rulesVersion = getVersionForDossierTemplate(dossierTemplateId);
|
||||
if (rulesVersion == null) {
|
||||
return -1;
|
||||
}
|
||||
return rulesVersion;
|
||||
}
|
||||
|
||||
|
||||
@SneakyThrows
|
||||
private Long getVersionForDossierTemplate(String dossierTemplateId) {
|
||||
|
||||
return tenantRulesCache.get(TenantContext.getTenantId()).getRulesVersionPerDossierTemplateId().get(dossierTemplateId);
|
||||
}
|
||||
|
||||
|
||||
@SneakyThrows
|
||||
private void setRulesVersionForDossierTemplate(String dossierTemplateId, long version) {
|
||||
|
||||
tenantRulesCache.get(TenantContext.getTenantId()).getRulesVersionPerDossierTemplateId().put(dossierTemplateId, version);
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
+7
-65
@@ -8,13 +8,13 @@ import java.util.List;
|
||||
import java.util.Map;
|
||||
import java.util.Objects;
|
||||
import java.util.Set;
|
||||
import java.util.concurrent.TimeUnit;
|
||||
import java.util.stream.Collectors;
|
||||
|
||||
import org.kie.api.runtime.KieContainer;
|
||||
import org.springframework.stereotype.Service;
|
||||
import org.springframework.web.bind.annotation.RequestBody;
|
||||
|
||||
import com.iqser.gin4.commons.metrics.meters.FunctionTimerValues;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.AnalyzeRequest;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.AnalyzeResult;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.FileAttribute;
|
||||
@@ -53,10 +53,8 @@ import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettin
|
||||
import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
|
||||
|
||||
import io.micrometer.core.annotation.Timed;
|
||||
import io.micrometer.core.instrument.FunctionTimer;
|
||||
import io.micrometer.core.instrument.MeterRegistry;
|
||||
import lombok.AccessLevel;
|
||||
import lombok.Getter;
|
||||
import lombok.RequiredArgsConstructor;
|
||||
import lombok.SneakyThrows;
|
||||
import lombok.experimental.FieldDefaults;
|
||||
import lombok.extern.slf4j.Slf4j;
|
||||
@@ -64,8 +62,11 @@ import lombok.extern.slf4j.Slf4j;
|
||||
@Slf4j
|
||||
@Service
|
||||
@FieldDefaults(makeFinal = true, level = AccessLevel.PRIVATE)
|
||||
@RequiredArgsConstructor
|
||||
public class AnalyzeService {
|
||||
|
||||
private static final String REDACTMANAGER_ANALYZE_PAGEWISE_METRIC_NAME = "redactmanager_analyze.pagewise";
|
||||
|
||||
DictionaryService dictionaryService;
|
||||
DroolsExecutionService droolsExecutionService;
|
||||
EntityRedactionService entityRedactionService;
|
||||
@@ -80,50 +81,8 @@ public class AnalyzeService {
|
||||
ImageService imageService;
|
||||
ImportedRedactionService importedRedactionService;
|
||||
SectionFinder sectionFinder;
|
||||
PagewiseCounter analyzeCounter = new PagewiseCounter();
|
||||
|
||||
|
||||
@SuppressWarnings("SpringJavaInjectionPointsAutowiringInspection")
|
||||
public AnalyzeService(DictionaryService dictionaryService,
|
||||
DroolsExecutionService droolsExecutionService,
|
||||
EntityRedactionService entityRedactionService,
|
||||
RedactionLogCreatorService redactionLogCreatorService,
|
||||
RedactionStorageService redactionStorageService,
|
||||
PdfSegmentationService pdfSegmentationService,
|
||||
RedactionChangeLogService redactionChangeLogService,
|
||||
LegalBasisClient legalBasisClient,
|
||||
RedactionServiceSettings redactionServiceSettings,
|
||||
SectionTextBuilderService sectionTextBuilderService,
|
||||
SectionGridCreatorService sectionGridCreatorService,
|
||||
ImageService imageService,
|
||||
ImportedRedactionService importedRedactionService,
|
||||
SectionFinder sectionFinder,
|
||||
MeterRegistry meterRegistry) {
|
||||
|
||||
this.dictionaryService = dictionaryService;
|
||||
this.droolsExecutionService = droolsExecutionService;
|
||||
this.entityRedactionService = entityRedactionService;
|
||||
this.redactionLogCreatorService = redactionLogCreatorService;
|
||||
this.redactionStorageService = redactionStorageService;
|
||||
this.pdfSegmentationService = pdfSegmentationService;
|
||||
this.redactionChangeLogService = redactionChangeLogService;
|
||||
this.legalBasisClient = legalBasisClient;
|
||||
this.redactionServiceSettings = redactionServiceSettings;
|
||||
this.sectionTextBuilderService = sectionTextBuilderService;
|
||||
this.sectionGridCreatorService = sectionGridCreatorService;
|
||||
this.imageService = imageService;
|
||||
this.importedRedactionService = importedRedactionService;
|
||||
this.sectionFinder = sectionFinder;
|
||||
|
||||
// This is just here as an example of how to do a timer with a counter.
|
||||
// For a full implementation this should be moved to a common helper class.
|
||||
FunctionTimer.builder("redactmanager_analyze.pagewise", //
|
||||
analyzeCounter, //
|
||||
PagewiseCounter::getTotalPageCount, //
|
||||
PagewiseCounter::getTotalTimeMillis, //
|
||||
TimeUnit.MILLISECONDS) //
|
||||
.register(meterRegistry);
|
||||
}
|
||||
FunctionTimerValues redactmanagerAnalyzePagewiseValues;
|
||||
|
||||
|
||||
@Timed("redactmanager_analyzeDocumentStructure")
|
||||
@@ -296,7 +255,7 @@ public class AnalyzeService {
|
||||
|
||||
long duration = System.currentTimeMillis() - startTime;
|
||||
|
||||
analyzeCounter.increase(text.getNumberOfPages(), duration);
|
||||
redactmanagerAnalyzePagewiseValues.increase(text.getNumberOfPages(), duration);
|
||||
|
||||
return AnalyzeResult.builder()
|
||||
.dossierId(analyzeRequest.getDossierId())
|
||||
@@ -347,21 +306,4 @@ public class AnalyzeService {
|
||||
return SimplifiedText.builder().numberOfPages(numberOfPages).sectionTexts(sectionTexts).build();
|
||||
}
|
||||
|
||||
|
||||
@FieldDefaults(level = AccessLevel.PRIVATE)
|
||||
@Getter
|
||||
private static final class PagewiseCounter {
|
||||
|
||||
long totalPageCount;
|
||||
long totalTimeMillis;
|
||||
|
||||
|
||||
public void increase(long pageCount, long durationMillis) {
|
||||
|
||||
totalPageCount += pageCount;
|
||||
totalTimeMillis += durationMillis;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
+1
-1
@@ -66,7 +66,7 @@ class EntityFinder {
|
||||
!local,
|
||||
model.isDossierDictionary(),
|
||||
local ? Engine.RULE : Engine.DICTIONARY,
|
||||
local ? EntityType.RECOMMENDATION : EntityType.ENTITY));
|
||||
local ? EntityType.RECOMMENDATION : EntityType.ENTITY)).stream().filter(e -> !e.isFalsePositive()).collect(Collectors.toSet());
|
||||
|
||||
EntitySearchUtils.addOrAddEngine(found, entities);
|
||||
}
|
||||
|
||||
+10
-3
@@ -273,14 +273,14 @@ public final class EntitySearchUtils {
|
||||
existing.setLegalBasis(found.getLegalBasis());
|
||||
existing.setMatchedRule(found.getMatchedRule());
|
||||
existing.setRedactionReason(found.getRedactionReason());
|
||||
if (existing.getEntityType().equals(EntityType.RECOMMENDATION) && found.getEntityType().equals(EntityType.ENTITY) || existing.getEntityType()
|
||||
.equals(EntityType.ENTITY) && found.getEntityType().equals(EntityType.RECOMMENDATION)) {
|
||||
if (isOneARecommendationAndTheOtherEntity(found, existing)) {
|
||||
existing.setEntityType(EntityType.ENTITY);
|
||||
if (found.isRedaction()) {
|
||||
existing.setRedaction(true);
|
||||
}
|
||||
}
|
||||
} else if (dictionary.getDictionaryRank(existing.getType()) <= dictionary.getDictionaryRank(found.getType())) {
|
||||
} else if (dictionary.getDictionaryRank(existing.getType()) <= dictionary.getDictionaryRank(found.getType()) &&
|
||||
!(isOneARecommendationAndTheOtherEntity(found, existing) && existing.isRedaction() && found.isRedaction()) ) {
|
||||
entities.remove(found);
|
||||
entities.add(found);
|
||||
}
|
||||
@@ -289,6 +289,13 @@ public final class EntitySearchUtils {
|
||||
}
|
||||
}
|
||||
|
||||
private boolean isOneARecommendationAndTheOtherEntity(Entity entityOne, Entity entityTwo) {
|
||||
|
||||
var entityTypeOne = entityOne.getEntityType();
|
||||
var entityTypeTwo = entityTwo.getEntityType();
|
||||
return entityTypeTwo.equals(EntityType.RECOMMENDATION) && entityTypeOne.equals(EntityType.ENTITY)
|
||||
|| entityTypeTwo.equals(EntityType.ENTITY) && entityTypeOne.equals(EntityType.RECOMMENDATION);
|
||||
}
|
||||
|
||||
public void addEntitiesIgnoreRank(Set<Entity> entities, Set<Entity> found) {
|
||||
// HashSet keeps old value but we want the new.
|
||||
|
||||
+4
@@ -24,4 +24,8 @@ public class RedactionServiceSettings {
|
||||
|
||||
private boolean priorityMode;
|
||||
|
||||
private long dictionaryCacheMaximumSize = 100;
|
||||
|
||||
private int dictionaryCacheExpireAfterAccessDays = 3;
|
||||
|
||||
}
|
||||
|
||||
-3
@@ -1,6 +1,5 @@
|
||||
package com.iqser.red.service.redaction.v1.server.tableextraction.model;
|
||||
|
||||
import com.dslplatform.json.JsonAttribute;
|
||||
import com.fasterxml.jackson.annotation.JsonIgnore;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.redactionlog.Rectangle;
|
||||
import com.iqser.red.service.redaction.v1.server.classification.model.Orientation;
|
||||
@@ -55,7 +54,6 @@ public abstract class AbstractTextContainer {
|
||||
|
||||
|
||||
@JsonIgnore
|
||||
@JsonAttribute(ignore = true)
|
||||
public float getHeight() {
|
||||
|
||||
return maxY - minY;
|
||||
@@ -63,7 +61,6 @@ public abstract class AbstractTextContainer {
|
||||
|
||||
|
||||
@JsonIgnore
|
||||
@JsonAttribute(ignore = true)
|
||||
public float getWidth() {
|
||||
|
||||
return maxX - minX;
|
||||
|
||||
+8
@@ -25,6 +25,8 @@ public class Cell extends Rectangle {
|
||||
|
||||
private boolean isHeaderCell;
|
||||
|
||||
private static final int MIN_SIZE = 1;
|
||||
|
||||
|
||||
public Cell(Point2D topLeft, Point2D bottomRight) {
|
||||
|
||||
@@ -66,4 +68,10 @@ public class Cell extends Rectangle {
|
||||
return TextNormalizationUtilities.removeHyphenLineBreaks(sb.toString()).replaceAll("\n", " ").replaceAll(" {2}", " ");
|
||||
}
|
||||
|
||||
|
||||
public boolean hasMinimumSize() {
|
||||
|
||||
return this.getHeight() >= MIN_SIZE && this.getWidth() >= MIN_SIZE;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
+3
-1
@@ -261,7 +261,9 @@ public class Table extends AbstractTextContainer {
|
||||
if (intersectionCell.isPresent()) {
|
||||
cell.getTextBlocks().addAll(intersectionCell.get().getTextBlocks());
|
||||
}
|
||||
row.add(cell);
|
||||
if (cell.hasMinimumSize()) {
|
||||
row.add(cell);
|
||||
}
|
||||
}
|
||||
prevX = x;
|
||||
}
|
||||
|
||||
+2
-2
@@ -88,7 +88,7 @@ public class TableExtractionService {
|
||||
for (AbstractTextContainer abstractTextContainer : page.getTextBlocks()) {
|
||||
TextBlock textBlock = (TextBlock) abstractTextContainer;
|
||||
for (Cell cell : cells) {
|
||||
if (cell.intersects(textBlock.getPdfMinX(),
|
||||
if (cell.hasMinimumSize() && cell.intersects(textBlock.getPdfMinX(),
|
||||
textBlock.getPdfMinY(),
|
||||
textBlock.getPdfMaxX() - textBlock.getPdfMinX(),
|
||||
textBlock.getPdfMaxY() - textBlock.getPdfMinY())) {
|
||||
@@ -109,7 +109,7 @@ public class TableExtractionService {
|
||||
|
||||
List<Cell> overlappingCells = new ArrayList<>();
|
||||
for (Cell c : cells) {
|
||||
if (c.intersects(area)) {
|
||||
if (c.hasMinimumSize() && c.intersects(area)) {
|
||||
overlappingCells.add(c);
|
||||
}
|
||||
}
|
||||
|
||||
+462
@@ -0,0 +1,462 @@
|
||||
package com.iqser.red.service.redaction.v1.server;
|
||||
|
||||
import static org.mockito.Mockito.when;
|
||||
|
||||
import java.io.File;
|
||||
import java.io.InputStream;
|
||||
import java.net.URL;
|
||||
import java.nio.file.Files;
|
||||
import java.time.OffsetDateTime;
|
||||
import java.util.ArrayList;
|
||||
import java.util.Collections;
|
||||
import java.util.HashMap;
|
||||
import java.util.HashSet;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
import java.util.Set;
|
||||
import java.util.stream.Collectors;
|
||||
|
||||
import org.junit.jupiter.api.AfterEach;
|
||||
import org.mockito.stubbing.Answer;
|
||||
import org.springframework.amqp.rabbit.core.RabbitTemplate;
|
||||
import org.springframework.beans.factory.annotation.Autowired;
|
||||
import org.springframework.boot.test.mock.mockito.MockBean;
|
||||
import org.springframework.core.io.ClassPathResource;
|
||||
|
||||
import com.amazonaws.services.s3.AmazonS3;
|
||||
import com.fasterxml.jackson.databind.ObjectMapper;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.AnalyzeRequest;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.dossiertemplate.configuration.Colors;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.dossiertemplate.dossier.file.FileType;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.dossiertemplate.type.DictionaryEntry;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.dossiertemplate.type.Type;
|
||||
import com.iqser.red.service.redaction.v1.server.annotate.AnnotationService;
|
||||
import com.iqser.red.service.redaction.v1.server.client.DictionaryClient;
|
||||
import com.iqser.red.service.redaction.v1.server.client.LegalBasisClient;
|
||||
import com.iqser.red.service.redaction.v1.server.client.RulesClient;
|
||||
import com.iqser.red.service.redaction.v1.server.controller.RedactionController;
|
||||
import com.iqser.red.service.redaction.v1.server.multitenancy.TenantContext;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.service.ManualRedactionSurroundingTextService;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.service.analyze.AnalyzeService;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.utils.ResourceLoader;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.utils.TextNormalizationUtilities;
|
||||
import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
|
||||
import com.iqser.red.storage.commons.service.StorageService;
|
||||
|
||||
import lombok.SneakyThrows;
|
||||
|
||||
public abstract class AbstractRedactionIntegrationTest {
|
||||
|
||||
protected static final String VERTEBRATE_INDICATOR = "vertebrate";
|
||||
protected static final String DICTIONARY_ADDRESS = "CBI_address";
|
||||
protected static final String DICTIONARY_AUTHOR = "CBI_author";
|
||||
protected static final String DICTIONARY_SPONSOR = "CBI_sponsor";
|
||||
protected static final String DICTIONARY_PII = "PII";
|
||||
protected static final String NO_REDACTION_INDICATOR = "no_redaction_indicator";
|
||||
protected static final String REDACTION_INDICATOR = "redaction_indicator";
|
||||
protected static final String HINT_ONLY_INDICATOR = "hint_only";
|
||||
protected static final String MUST_REDACT_INDICATOR = "must_redact";
|
||||
protected static final String PUBLISHED_INFORMATION_INDICATOR = "published_information";
|
||||
protected static final String TEST_METHOD_INDICATOR = "test_method";
|
||||
protected static final String PURITY_INDICATOR = "purity";
|
||||
protected static final String IMAGE_INDICATOR = "image";
|
||||
protected static final String LOGO_INDICATOR = "logo";
|
||||
protected static final String SIGNATURE_INDICATOR = "signature";
|
||||
protected static final String FORMULA_INDICATOR = "formula";
|
||||
protected static final String OCR_INDICATOR = "ocr";
|
||||
protected static final String DOSSIER_REDACTIONS_INDICATOR = "dossier_redactions";
|
||||
protected static final String IMPORTED_REDACTION_INDICATOR = "imported_redaction";
|
||||
protected static final String ROTATE_SIMPLE_INDICATOR = "RotateSimple";
|
||||
|
||||
protected final static String TEST_DOSSIER_TEMPLATE_ID = "123";
|
||||
public static final String IMPORTED_REDACTION_TYPE_ID = IMPORTED_REDACTION_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID;
|
||||
public static final String DOSSIER_REDACTIONS_TYPE_ID = DOSSIER_REDACTIONS_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID;
|
||||
public static final String ROTATE_SIMPLE_TYPE_ID = ROTATE_SIMPLE_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID;
|
||||
public static final String FORMULA_TYPE_ID = FORMULA_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID;
|
||||
public static final String SIGNATURE_TYPE_ID = SIGNATURE_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID;
|
||||
public static final String LOGO_TYPE_ID = LOGO_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID;
|
||||
public static final String OCR_TYPE_ID = OCR_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID;
|
||||
public static final String IMAGE_TYPE_ID = IMAGE_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID;
|
||||
public static final String PURITY_TYPE_ID = PURITY_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID;
|
||||
public static final String PII_TYPE_ID = DICTIONARY_PII + ":" + TEST_DOSSIER_TEMPLATE_ID;
|
||||
public static final String TEST_METHOD_TYPE_ID = TEST_METHOD_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID;
|
||||
public static final String PUBLISHED_INFORMATION_TYPE_ID = PUBLISHED_INFORMATION_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID;
|
||||
public static final String MUST_REDACT_TYPE_ID = MUST_REDACT_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID;
|
||||
public static final String HINT_ONLY_TYPE_ID = HINT_ONLY_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID;
|
||||
public static final String REDACTION_TYPE_ID = REDACTION_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID;
|
||||
public static final String NO_REDACTION_TYPE_ID = NO_REDACTION_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID;
|
||||
public static final String SPONSOR_TYPE_ID = DICTIONARY_SPONSOR + ":" + TEST_DOSSIER_TEMPLATE_ID;
|
||||
public static final String AUTHOR_TYPE_ID = DICTIONARY_AUTHOR + ":" + TEST_DOSSIER_TEMPLATE_ID;
|
||||
public static final String ADDRESS_TYPE_ID = DICTIONARY_ADDRESS + ":" + TEST_DOSSIER_TEMPLATE_ID;
|
||||
public static final String VERTEBRATE_TYPE_ID = VERTEBRATE_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID;
|
||||
|
||||
@Autowired
|
||||
protected RedactionController redactionController;
|
||||
|
||||
@Autowired
|
||||
protected AnnotationService annotationService;
|
||||
|
||||
@Autowired
|
||||
protected AnalyzeService analyzeService;
|
||||
|
||||
@Autowired
|
||||
protected ObjectMapper objectMapper;
|
||||
|
||||
@Autowired
|
||||
protected RedactionStorageService redactionStorageService;
|
||||
|
||||
@Autowired
|
||||
protected StorageService storageService;
|
||||
|
||||
@Autowired
|
||||
protected ManualRedactionSurroundingTextService manualRedactionSurroundingTextService;
|
||||
|
||||
@MockBean
|
||||
protected AmazonS3 amazonS3;
|
||||
|
||||
@MockBean
|
||||
protected RabbitTemplate rabbitTemplate;
|
||||
|
||||
@MockBean
|
||||
protected LegalBasisClient legalBasisClient;
|
||||
|
||||
protected final Map<String, List<String>> dictionary = new HashMap<>();
|
||||
protected final Map<String, List<String>> dossierDictionary = new HashMap<>();
|
||||
protected final Map<String, List<String>> falsePositive = new HashMap<>();
|
||||
protected final Map<String, List<String>> falseRecommendation = new HashMap<>();
|
||||
protected final Map<String, String> typeColorMap = new HashMap<>();
|
||||
protected final Map<String, Boolean> hintTypeMap = new HashMap<>();
|
||||
protected final Map<String, Boolean> caseInSensitiveMap = new HashMap<>();
|
||||
protected final Map<String, Boolean> recommendationTypeMap = new HashMap<>();
|
||||
protected final Map<String, Integer> rankTypeMap = new HashMap<>();
|
||||
protected final Colors colors = new Colors();
|
||||
protected final Map<String, Long> reanlysisVersions = new HashMap<>();
|
||||
protected final Set<String> deleted = new HashSet<>();
|
||||
|
||||
protected final static String TEST_DOSSIER_ID = "123";
|
||||
protected final static String TEST_FILE_ID = "123";
|
||||
|
||||
@MockBean
|
||||
protected RulesClient rulesClient;
|
||||
|
||||
@MockBean
|
||||
protected DictionaryClient dictionaryClient;
|
||||
|
||||
|
||||
@AfterEach
|
||||
public void cleanupStorage() {
|
||||
|
||||
if (this.storageService instanceof FileSystemBackedStorageService) {
|
||||
((FileSystemBackedStorageService) this.storageService).clearStorage();
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
protected void mockDictionaryCalls(Long version) {
|
||||
|
||||
when(dictionaryClient.getDictionaryForType(VERTEBRATE_TYPE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(VERTEBRATE_INDICATOR, false));
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_TYPE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(DICTIONARY_ADDRESS, false));
|
||||
when(dictionaryClient.getDictionaryForType(AUTHOR_TYPE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(DICTIONARY_AUTHOR, false));
|
||||
when(dictionaryClient.getDictionaryForType(SPONSOR_TYPE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(DICTIONARY_SPONSOR, false));
|
||||
when(dictionaryClient.getDictionaryForType(NO_REDACTION_TYPE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(NO_REDACTION_INDICATOR, false));
|
||||
when(dictionaryClient.getDictionaryForType(REDACTION_TYPE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(REDACTION_INDICATOR, false));
|
||||
when(dictionaryClient.getDictionaryForType(HINT_ONLY_TYPE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(HINT_ONLY_INDICATOR, false));
|
||||
when(dictionaryClient.getDictionaryForType(MUST_REDACT_TYPE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(MUST_REDACT_INDICATOR, false));
|
||||
when(dictionaryClient.getDictionaryForType(PUBLISHED_INFORMATION_TYPE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(PUBLISHED_INFORMATION_INDICATOR, false));
|
||||
when(dictionaryClient.getDictionaryForType(TEST_METHOD_TYPE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(TEST_METHOD_INDICATOR, false));
|
||||
when(dictionaryClient.getDictionaryForType(PII_TYPE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(DICTIONARY_PII, false));
|
||||
when(dictionaryClient.getDictionaryForType(PURITY_TYPE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(PURITY_INDICATOR, false));
|
||||
when(dictionaryClient.getDictionaryForType(IMAGE_TYPE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(IMAGE_INDICATOR, false));
|
||||
when(dictionaryClient.getDictionaryForType(OCR_TYPE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(OCR_INDICATOR, false));
|
||||
when(dictionaryClient.getDictionaryForType(LOGO_TYPE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(LOGO_INDICATOR, false));
|
||||
when(dictionaryClient.getDictionaryForType(SIGNATURE_TYPE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(SIGNATURE_INDICATOR, false));
|
||||
when(dictionaryClient.getDictionaryForType(FORMULA_TYPE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(FORMULA_INDICATOR, false));
|
||||
when(dictionaryClient.getDictionaryForType(ROTATE_SIMPLE_TYPE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(ROTATE_SIMPLE_INDICATOR, false));
|
||||
when(dictionaryClient.getDictionaryForType(DOSSIER_REDACTIONS_TYPE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(DOSSIER_REDACTIONS_INDICATOR,true));
|
||||
when(dictionaryClient.getDictionaryForType(IMPORTED_REDACTION_TYPE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(IMPORTED_REDACTION_INDICATOR,true));
|
||||
|
||||
}
|
||||
|
||||
|
||||
protected void loadDictionaryForTest() {
|
||||
|
||||
dictionary.computeIfAbsent(DICTIONARY_AUTHOR, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/CBI_author.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(DICTIONARY_SPONSOR, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/CBI_sponsor.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(VERTEBRATE_INDICATOR, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/vertebrate.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(DICTIONARY_ADDRESS, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/CBI_address.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(NO_REDACTION_INDICATOR, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/no_redaction_indicator.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(REDACTION_INDICATOR, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/redaction_indicator.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(HINT_ONLY_INDICATOR, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/hint_only.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(MUST_REDACT_INDICATOR, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/must_redact.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(PUBLISHED_INFORMATION_INDICATOR, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/published_information.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(TEST_METHOD_INDICATOR, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/test_method.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(DICTIONARY_PII, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/PII.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(PURITY_INDICATOR, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/purity.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(IMAGE_INDICATOR, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/empty.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(OCR_INDICATOR, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/empty.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(LOGO_INDICATOR, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/empty.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(SIGNATURE_INDICATOR, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/empty.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(FORMULA_INDICATOR, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/empty.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
dossierDictionary.computeIfAbsent(DOSSIER_REDACTIONS_INDICATOR, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/dossier_redactions.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
dossierDictionary.put(IMPORTED_REDACTION_INDICATOR, new ArrayList<>());
|
||||
|
||||
falsePositive.computeIfAbsent(DICTIONARY_PII, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/PII_false_positive.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
|
||||
}
|
||||
|
||||
|
||||
protected void loadOnlyDictionaryForSimpleFile() {
|
||||
|
||||
dictionary.clear();
|
||||
dictionary.computeIfAbsent(ROTATE_SIMPLE_INDICATOR, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/RotateTestFileSimple.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
}
|
||||
|
||||
|
||||
@SneakyThrows
|
||||
protected static String loadFromClassPath(String path) {
|
||||
|
||||
URL resource = ResourceLoader.class.getClassLoader().getResource(path);
|
||||
if (resource == null) {
|
||||
throw new IllegalArgumentException("could not load classpath resource: drools/rules.drl");
|
||||
}
|
||||
List<String> stringList = Files.readAllLines(new File(resource.getPath()).toPath());
|
||||
return String.join("\n", stringList);
|
||||
}
|
||||
|
||||
|
||||
protected void loadTypeForTest() {
|
||||
|
||||
typeColorMap.put(VERTEBRATE_INDICATOR, "#ff85f7");
|
||||
typeColorMap.put(DICTIONARY_ADDRESS, "#ffe187");
|
||||
typeColorMap.put(DICTIONARY_AUTHOR, "#ffe187");
|
||||
typeColorMap.put(DICTIONARY_SPONSOR, "#85ebff");
|
||||
typeColorMap.put(NO_REDACTION_INDICATOR, "#be85ff");
|
||||
typeColorMap.put(REDACTION_INDICATOR, "#caff85");
|
||||
typeColorMap.put(HINT_ONLY_INDICATOR, "#abc0c4");
|
||||
typeColorMap.put(MUST_REDACT_INDICATOR, "#fab4c0");
|
||||
typeColorMap.put(PUBLISHED_INFORMATION_INDICATOR, "#85ebff");
|
||||
typeColorMap.put(TEST_METHOD_INDICATOR, "#91fae8");
|
||||
typeColorMap.put(DICTIONARY_PII, "#66ccff");
|
||||
typeColorMap.put(PURITY_INDICATOR, "#ffe187");
|
||||
typeColorMap.put(IMAGE_INDICATOR, "#fcc5fb");
|
||||
typeColorMap.put(OCR_INDICATOR, "#fcc5fb");
|
||||
typeColorMap.put(LOGO_INDICATOR, "#ffe187");
|
||||
typeColorMap.put(FORMULA_INDICATOR, "#ffe187");
|
||||
typeColorMap.put(SIGNATURE_INDICATOR, "#ffe187");
|
||||
typeColorMap.put(IMPORTED_REDACTION_INDICATOR, "#fcfbe6");
|
||||
typeColorMap.put(ROTATE_SIMPLE_INDICATOR, "#66ccff");
|
||||
|
||||
hintTypeMap.put(VERTEBRATE_INDICATOR, true);
|
||||
hintTypeMap.put(DICTIONARY_ADDRESS, false);
|
||||
hintTypeMap.put(DICTIONARY_AUTHOR, false);
|
||||
hintTypeMap.put(DICTIONARY_SPONSOR, false);
|
||||
hintTypeMap.put(NO_REDACTION_INDICATOR, true);
|
||||
hintTypeMap.put(REDACTION_INDICATOR, true);
|
||||
hintTypeMap.put(HINT_ONLY_INDICATOR, true);
|
||||
hintTypeMap.put(MUST_REDACT_INDICATOR, true);
|
||||
hintTypeMap.put(PUBLISHED_INFORMATION_INDICATOR, true);
|
||||
hintTypeMap.put(TEST_METHOD_INDICATOR, true);
|
||||
hintTypeMap.put(DICTIONARY_PII, false);
|
||||
hintTypeMap.put(PURITY_INDICATOR, false);
|
||||
hintTypeMap.put(IMAGE_INDICATOR, true);
|
||||
hintTypeMap.put(OCR_INDICATOR, true);
|
||||
hintTypeMap.put(FORMULA_INDICATOR, false);
|
||||
hintTypeMap.put(LOGO_INDICATOR, false);
|
||||
hintTypeMap.put(SIGNATURE_INDICATOR, false);
|
||||
hintTypeMap.put(DOSSIER_REDACTIONS_INDICATOR, false);
|
||||
hintTypeMap.put(IMPORTED_REDACTION_INDICATOR, false);
|
||||
hintTypeMap.put(ROTATE_SIMPLE_INDICATOR, false);
|
||||
|
||||
caseInSensitiveMap.put(VERTEBRATE_INDICATOR, true);
|
||||
caseInSensitiveMap.put(DICTIONARY_ADDRESS, false);
|
||||
caseInSensitiveMap.put(DICTIONARY_AUTHOR, false);
|
||||
caseInSensitiveMap.put(DICTIONARY_SPONSOR, false);
|
||||
caseInSensitiveMap.put(NO_REDACTION_INDICATOR, true);
|
||||
caseInSensitiveMap.put(REDACTION_INDICATOR, true);
|
||||
caseInSensitiveMap.put(HINT_ONLY_INDICATOR, true);
|
||||
caseInSensitiveMap.put(MUST_REDACT_INDICATOR, true);
|
||||
caseInSensitiveMap.put(PUBLISHED_INFORMATION_INDICATOR, true);
|
||||
caseInSensitiveMap.put(TEST_METHOD_INDICATOR, false);
|
||||
caseInSensitiveMap.put(DICTIONARY_PII, false);
|
||||
caseInSensitiveMap.put(PURITY_INDICATOR, false);
|
||||
caseInSensitiveMap.put(IMAGE_INDICATOR, true);
|
||||
caseInSensitiveMap.put(OCR_INDICATOR, true);
|
||||
caseInSensitiveMap.put(SIGNATURE_INDICATOR, true);
|
||||
caseInSensitiveMap.put(LOGO_INDICATOR, true);
|
||||
caseInSensitiveMap.put(FORMULA_INDICATOR, true);
|
||||
caseInSensitiveMap.put(DOSSIER_REDACTIONS_INDICATOR, false);
|
||||
caseInSensitiveMap.put(IMPORTED_REDACTION_INDICATOR, false);
|
||||
caseInSensitiveMap.put(ROTATE_SIMPLE_INDICATOR, true);
|
||||
|
||||
recommendationTypeMap.put(VERTEBRATE_INDICATOR, false);
|
||||
recommendationTypeMap.put(DICTIONARY_ADDRESS, false);
|
||||
recommendationTypeMap.put(DICTIONARY_AUTHOR, false);
|
||||
recommendationTypeMap.put(DICTIONARY_SPONSOR, false);
|
||||
recommendationTypeMap.put(NO_REDACTION_INDICATOR, false);
|
||||
recommendationTypeMap.put(REDACTION_INDICATOR, false);
|
||||
recommendationTypeMap.put(HINT_ONLY_INDICATOR, false);
|
||||
recommendationTypeMap.put(MUST_REDACT_INDICATOR, false);
|
||||
recommendationTypeMap.put(PUBLISHED_INFORMATION_INDICATOR, false);
|
||||
recommendationTypeMap.put(TEST_METHOD_INDICATOR, false);
|
||||
recommendationTypeMap.put(DICTIONARY_PII, false);
|
||||
recommendationTypeMap.put(PURITY_INDICATOR, false);
|
||||
recommendationTypeMap.put(IMAGE_INDICATOR, false);
|
||||
recommendationTypeMap.put(OCR_INDICATOR, false);
|
||||
recommendationTypeMap.put(FORMULA_INDICATOR, false);
|
||||
recommendationTypeMap.put(SIGNATURE_INDICATOR, false);
|
||||
recommendationTypeMap.put(LOGO_INDICATOR, false);
|
||||
recommendationTypeMap.put(DOSSIER_REDACTIONS_INDICATOR, false);
|
||||
recommendationTypeMap.put(IMPORTED_REDACTION_INDICATOR, false);
|
||||
recommendationTypeMap.put(ROTATE_SIMPLE_INDICATOR, false);
|
||||
|
||||
rankTypeMap.put(PURITY_INDICATOR, 155);
|
||||
rankTypeMap.put(DICTIONARY_PII, 150);
|
||||
rankTypeMap.put(DICTIONARY_ADDRESS, 140);
|
||||
rankTypeMap.put(DICTIONARY_AUTHOR, 130);
|
||||
rankTypeMap.put(DICTIONARY_SPONSOR, 120);
|
||||
rankTypeMap.put(VERTEBRATE_INDICATOR, 110);
|
||||
rankTypeMap.put(MUST_REDACT_INDICATOR, 100);
|
||||
rankTypeMap.put(REDACTION_INDICATOR, 90);
|
||||
rankTypeMap.put(NO_REDACTION_INDICATOR, 80);
|
||||
rankTypeMap.put(PUBLISHED_INFORMATION_INDICATOR, 70);
|
||||
rankTypeMap.put(TEST_METHOD_INDICATOR, 60);
|
||||
rankTypeMap.put(HINT_ONLY_INDICATOR, 50);
|
||||
rankTypeMap.put(IMAGE_INDICATOR, 30);
|
||||
rankTypeMap.put(OCR_INDICATOR, 29);
|
||||
rankTypeMap.put(LOGO_INDICATOR, 28);
|
||||
rankTypeMap.put(SIGNATURE_INDICATOR, 27);
|
||||
rankTypeMap.put(FORMULA_INDICATOR, 26);
|
||||
rankTypeMap.put(DOSSIER_REDACTIONS_INDICATOR, 200);
|
||||
rankTypeMap.put(IMPORTED_REDACTION_INDICATOR, 200);
|
||||
rankTypeMap.put(ROTATE_SIMPLE_INDICATOR, 150);
|
||||
|
||||
colors.setSkippedColor("#cccccc");
|
||||
colors.setRequestAddColor("#04b093");
|
||||
colors.setRequestRemoveColor("#04b093");
|
||||
}
|
||||
|
||||
|
||||
@SneakyThrows
|
||||
protected void loadNerForTest() {
|
||||
|
||||
ClassPathResource responseJson = new ClassPathResource("files/ner_response.json");
|
||||
storageService.storeObject(TenantContext.getTenantId(),
|
||||
RedactionStorageService.StorageIdUtils.getStorageId(TEST_DOSSIER_ID, TEST_FILE_ID, FileType.NER_ENTITIES),
|
||||
responseJson.getInputStream());
|
||||
}
|
||||
|
||||
|
||||
protected List<Type> getTypeResponse() {
|
||||
|
||||
return typeColorMap.entrySet()
|
||||
.stream()
|
||||
.map(typeColor -> Type.builder()
|
||||
.id(typeColor.getKey() + ":" + TEST_DOSSIER_TEMPLATE_ID)
|
||||
.type(typeColor.getKey())
|
||||
.dossierTemplateId(TEST_DOSSIER_TEMPLATE_ID)
|
||||
.hexColor(typeColor.getValue())
|
||||
.isHint(hintTypeMap.get(typeColor.getKey()))
|
||||
.isCaseInsensitive(caseInSensitiveMap.get(typeColor.getKey()))
|
||||
.isRecommendation(recommendationTypeMap.get(typeColor.getKey()))
|
||||
.rank(rankTypeMap.get(typeColor.getKey()))
|
||||
.build())
|
||||
|
||||
.collect(Collectors.toList());
|
||||
}
|
||||
|
||||
|
||||
protected Type getDictionaryResponse(String type, boolean isDossierDictionary) {
|
||||
|
||||
return Type.builder()
|
||||
.id(type + ":" + TEST_DOSSIER_TEMPLATE_ID)
|
||||
.hexColor(typeColorMap.get(type))
|
||||
.entries(isDossierDictionary ? toDictionaryEntry(dossierDictionary.get(type)) : toDictionaryEntry(dictionary.get(type)))
|
||||
.falsePositiveEntries(falsePositive.containsKey(type) ? toDictionaryEntry(falsePositive.get(type)) : new ArrayList<>())
|
||||
.falseRecommendationEntries(falseRecommendation.containsKey(type) ? toDictionaryEntry(falseRecommendation.get(type)) : new ArrayList<>())
|
||||
.isHint(hintTypeMap.get(type))
|
||||
.isCaseInsensitive(caseInSensitiveMap.get(type))
|
||||
.isRecommendation(recommendationTypeMap.get(type))
|
||||
.rank(rankTypeMap.get(type))
|
||||
.build();
|
||||
}
|
||||
|
||||
|
||||
private String cleanDictionaryEntry(String entry) {
|
||||
|
||||
return TextNormalizationUtilities.removeHyphenLineBreaks(entry).replaceAll("\\n", " ");
|
||||
}
|
||||
|
||||
|
||||
private List<DictionaryEntry> toDictionaryEntry(List<String> entries) {
|
||||
|
||||
if (entries == null) {
|
||||
entries = Collections.emptyList();
|
||||
}
|
||||
return entries.stream().map(this::toDictionaryEntry).collect(Collectors.toList());
|
||||
|
||||
}
|
||||
|
||||
|
||||
private DictionaryEntry toDictionaryEntry(String entry) {
|
||||
|
||||
return DictionaryEntry.builder().value(entry).version(reanlysisVersions.getOrDefault(entry, 0L)).deleted(deleted.contains(entry)).build();
|
||||
}
|
||||
|
||||
|
||||
@SneakyThrows
|
||||
protected AnalyzeRequest uploadFileToStorage(String file) {
|
||||
|
||||
return prepareStorage(file, "files/cv_service_empty_response.json");
|
||||
}
|
||||
|
||||
|
||||
@SneakyThrows
|
||||
protected AnalyzeRequest prepareStorage(String file, String cvServiceResponseFile) {
|
||||
|
||||
ClassPathResource pdfFileResource = new ClassPathResource(file);
|
||||
ClassPathResource cvServiceResponseFileResource = new ClassPathResource(cvServiceResponseFile);
|
||||
|
||||
return prepareStorage(pdfFileResource.getInputStream(), cvServiceResponseFileResource.getInputStream());
|
||||
}
|
||||
|
||||
|
||||
@SneakyThrows
|
||||
protected AnalyzeRequest prepareStorage(InputStream fileStream, InputStream cvServiceResponseFileStream) {
|
||||
|
||||
AnalyzeRequest request = AnalyzeRequest.builder()
|
||||
.dossierTemplateId(TEST_DOSSIER_TEMPLATE_ID)
|
||||
.dossierId(TEST_DOSSIER_ID)
|
||||
.fileId(TEST_FILE_ID)
|
||||
.lastProcessed(OffsetDateTime.now())
|
||||
.build();
|
||||
|
||||
storageService.storeObject(TenantContext.getTenantId(),
|
||||
RedactionStorageService.StorageIdUtils.getStorageId(TEST_DOSSIER_ID, TEST_FILE_ID, FileType.TABLES),
|
||||
cvServiceResponseFileStream);
|
||||
storageService.storeObject(TenantContext.getTenantId(), RedactionStorageService.StorageIdUtils.getStorageId(TEST_DOSSIER_ID, TEST_FILE_ID, FileType.ORIGIN), fileStream);
|
||||
|
||||
return request;
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
+6
-1
@@ -18,7 +18,9 @@ import org.springframework.boot.autoconfigure.amqp.RabbitAutoConfiguration;
|
||||
import org.springframework.boot.test.context.SpringBootTest;
|
||||
import org.springframework.boot.test.mock.mockito.MockBean;
|
||||
import org.springframework.context.annotation.Bean;
|
||||
import org.springframework.context.annotation.ComponentScan;
|
||||
import org.springframework.context.annotation.Configuration;
|
||||
import org.springframework.context.annotation.FilterType;
|
||||
import org.springframework.context.annotation.Import;
|
||||
import org.springframework.context.annotation.Primary;
|
||||
import org.springframework.test.context.junit.jupiter.SpringExtension;
|
||||
@@ -27,6 +29,7 @@ import com.iqser.red.service.persistence.service.v1.api.shared.model.dossiertemp
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.dossiertemplate.type.DictionaryEntry;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.dossiertemplate.type.Type;
|
||||
import com.iqser.red.service.redaction.v1.server.client.DictionaryClient;
|
||||
import com.iqser.red.service.redaction.v1.server.multitenancy.TenantContext;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryVersion;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.service.DictionaryService;
|
||||
import com.iqser.red.storage.commons.StorageAutoConfiguration;
|
||||
@@ -47,7 +50,7 @@ public class DictionaryServiceTest {
|
||||
protected DictionaryService dictionaryService;
|
||||
|
||||
@Configuration
|
||||
@EnableAutoConfiguration(exclude = {RabbitAutoConfiguration.class, StorageAutoConfiguration.class})
|
||||
@EnableAutoConfiguration(exclude = {RabbitAutoConfiguration.class})
|
||||
public static class RedactionIntegrationTestConfiguration {
|
||||
|
||||
@Bean
|
||||
@@ -63,6 +66,8 @@ public class DictionaryServiceTest {
|
||||
@Test
|
||||
public void testDictionaryServiceConsistency() {
|
||||
|
||||
TenantContext.setTenantId("redaction");
|
||||
|
||||
when(dictionaryClient.getVersion(anyString())).thenReturn(0L);
|
||||
when(dictionaryClient.getColors(anyString())).thenReturn(new Colors("dossierTemplateId",
|
||||
"#cccccc",
|
||||
|
||||
+5
-1
@@ -37,7 +37,9 @@ import org.springframework.boot.autoconfigure.amqp.RabbitAutoConfiguration;
|
||||
import org.springframework.boot.test.context.SpringBootTest;
|
||||
import org.springframework.boot.test.mock.mockito.MockBean;
|
||||
import org.springframework.context.annotation.Bean;
|
||||
import org.springframework.context.annotation.ComponentScan;
|
||||
import org.springframework.context.annotation.Configuration;
|
||||
import org.springframework.context.annotation.FilterType;
|
||||
import org.springframework.context.annotation.Import;
|
||||
import org.springframework.context.annotation.Primary;
|
||||
import org.springframework.core.io.ClassPathResource;
|
||||
@@ -199,7 +201,8 @@ public class HeadlinesGoldStandardIntegrationTest {
|
||||
|
||||
|
||||
@Configuration
|
||||
@EnableAutoConfiguration(exclude = {RabbitAutoConfiguration.class, StorageAutoConfiguration.class})
|
||||
@EnableAutoConfiguration(exclude = {RabbitAutoConfiguration.class/*, StorageAutoConfiguration.class*/})
|
||||
@ComponentScan(excludeFilters={@ComponentScan.Filter(type= FilterType.ASSIGNABLE_TYPE, value=StorageAutoConfiguration.class)})
|
||||
public static class RedactionIntegrationTestConfiguration {
|
||||
|
||||
@Bean
|
||||
@@ -240,6 +243,7 @@ public class HeadlinesGoldStandardIntegrationTest {
|
||||
@BeforeEach
|
||||
public void stubClients() {
|
||||
|
||||
TenantContext.setTenantId("redaction");
|
||||
when(rulesClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(0L);
|
||||
when(rulesClient.getRules(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(JSONPrimitive.of(RULES));
|
||||
|
||||
|
||||
+70
-513
@@ -3,28 +3,26 @@ package com.iqser.red.service.redaction.v1.server;
|
||||
import static org.assertj.core.api.Assertions.assertThat;
|
||||
import static org.mockito.Mockito.when;
|
||||
|
||||
import java.io.BufferedReader;
|
||||
import java.io.ByteArrayInputStream;
|
||||
import java.io.File;
|
||||
import java.io.FileOutputStream;
|
||||
import java.io.IOException;
|
||||
import java.io.InputStream;
|
||||
import java.io.InputStreamReader;
|
||||
import java.net.URI;
|
||||
import java.net.URL;
|
||||
import java.nio.charset.StandardCharsets;
|
||||
import java.nio.file.Files;
|
||||
import java.nio.file.Path;
|
||||
import java.nio.file.Paths;
|
||||
import java.time.OffsetDateTime;
|
||||
import java.time.ZoneOffset;
|
||||
import java.util.ArrayList;
|
||||
import java.util.Collections;
|
||||
import java.util.HashMap;
|
||||
import java.util.HashSet;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
import java.util.Set;
|
||||
import java.util.UUID;
|
||||
import java.util.stream.Collectors;
|
||||
|
||||
import org.junit.jupiter.api.AfterEach;
|
||||
import org.junit.jupiter.api.BeforeEach;
|
||||
import org.junit.jupiter.api.Disabled;
|
||||
import org.junit.jupiter.api.Test;
|
||||
@@ -34,23 +32,19 @@ import org.kie.api.builder.KieBuilder;
|
||||
import org.kie.api.builder.KieFileSystem;
|
||||
import org.kie.api.builder.KieModule;
|
||||
import org.kie.api.runtime.KieContainer;
|
||||
import org.mockito.stubbing.Answer;
|
||||
import org.springframework.amqp.rabbit.core.RabbitTemplate;
|
||||
import org.springframework.beans.factory.annotation.Autowired;
|
||||
import org.springframework.boot.autoconfigure.EnableAutoConfiguration;
|
||||
import org.springframework.boot.autoconfigure.amqp.RabbitAutoConfiguration;
|
||||
import org.springframework.boot.test.context.SpringBootTest;
|
||||
import org.springframework.boot.test.mock.mockito.MockBean;
|
||||
import org.springframework.context.annotation.Bean;
|
||||
import org.springframework.context.annotation.ComponentScan;
|
||||
import org.springframework.context.annotation.Configuration;
|
||||
import org.springframework.context.annotation.FilterType;
|
||||
import org.springframework.context.annotation.Import;
|
||||
import org.springframework.context.annotation.Primary;
|
||||
import org.springframework.core.io.ClassPathResource;
|
||||
import org.springframework.test.context.junit.jupiter.SpringExtension;
|
||||
|
||||
import com.amazonaws.services.s3.AmazonS3;
|
||||
import com.fasterxml.jackson.core.type.TypeReference;
|
||||
import com.fasterxml.jackson.databind.ObjectMapper;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.AnalyzeRequest;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.AnalyzeResult;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.FileAttribute;
|
||||
@@ -67,24 +61,14 @@ import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.common.JSONPrimitive;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.dossiertemplate.configuration.Colors;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.dossiertemplate.dossier.file.FileType;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.dossiertemplate.type.DictionaryEntry;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.dossiertemplate.type.Type;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.redactionlog.RedactionLogEntry;
|
||||
import com.iqser.red.service.redaction.v1.model.StructureAnalyzeRequest;
|
||||
import com.iqser.red.service.redaction.v1.server.annotate.AnnotateRequest;
|
||||
import com.iqser.red.service.redaction.v1.server.annotate.AnnotateResponse;
|
||||
import com.iqser.red.service.redaction.v1.server.annotate.AnnotationService;
|
||||
import com.iqser.red.service.redaction.v1.server.classification.model.SectionText;
|
||||
import com.iqser.red.service.redaction.v1.server.client.DictionaryClient;
|
||||
import com.iqser.red.service.redaction.v1.server.client.LegalBasisClient;
|
||||
import com.iqser.red.service.redaction.v1.server.client.RulesClient;
|
||||
import com.iqser.red.service.redaction.v1.server.controller.RedactionController;
|
||||
import com.iqser.red.service.redaction.v1.server.multitenancy.TenantContext;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.service.ManualRedactionSurroundingTextService;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.service.analyze.AnalyzeService;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.utils.OsUtils;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.utils.ResourceLoader;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.utils.TextNormalizationUtilities;
|
||||
import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
|
||||
import com.iqser.red.storage.commons.StorageAutoConfiguration;
|
||||
import com.iqser.red.storage.commons.service.StorageService;
|
||||
@@ -94,85 +78,13 @@ import lombok.SneakyThrows;
|
||||
@ExtendWith(SpringExtension.class)
|
||||
@SpringBootTest(classes = Application.class, webEnvironment = SpringBootTest.WebEnvironment.RANDOM_PORT)
|
||||
@Import(RedactionIntegrationTest.RedactionIntegrationTestConfiguration.class)
|
||||
public class RedactionIntegrationTest {
|
||||
public class RedactionIntegrationTest extends AbstractRedactionIntegrationTest {
|
||||
|
||||
private static final String RULES = loadFromClassPath("drools/rules.drl");
|
||||
private static final String VERTEBRATE = "vertebrate";
|
||||
private static final String ADDRESS = "CBI_address";
|
||||
private static final String AUTHOR = "CBI_author";
|
||||
private static final String SPONSOR = "CBI_sponsor";
|
||||
private static final String NO_REDACTION_INDICATOR = "no_redaction_indicator";
|
||||
private static final String REDACTION_INDICATOR = "redaction_indicator";
|
||||
private static final String HINT_ONLY = "hint_only";
|
||||
private static final String MUST_REDACT = "must_redact";
|
||||
private static final String PUBLISHED_INFORMATION = "published_information";
|
||||
private static final String TEST_METHOD = "test_method";
|
||||
private static final String PURITY = "purity";
|
||||
private static final String IMAGE = "image";
|
||||
private static final String LOGO = "logo";
|
||||
private static final String SIGNATURE = "signature";
|
||||
private static final String FORMULA = "formula";
|
||||
private static final String OCR = "ocr";
|
||||
private static final String DOSSIER_REDACTIONS = "dossier_redactions";
|
||||
private static final String IMPORTED_REDACTION = "imported_redaction";
|
||||
private static final String PII = "PII";
|
||||
private static final String ROTATE_SIMPLE = "RotateSimple";
|
||||
|
||||
@Autowired
|
||||
private RedactionController redactionController;
|
||||
|
||||
@Autowired
|
||||
private AnnotationService annotationService;
|
||||
|
||||
@Autowired
|
||||
private AnalyzeService analyzeService;
|
||||
|
||||
@Autowired
|
||||
private ObjectMapper objectMapper;
|
||||
|
||||
@MockBean
|
||||
private RulesClient rulesClient;
|
||||
|
||||
@MockBean
|
||||
private DictionaryClient dictionaryClient;
|
||||
|
||||
@Autowired
|
||||
private RedactionStorageService redactionStorageService;
|
||||
|
||||
@Autowired
|
||||
private StorageService storageService;
|
||||
|
||||
@Autowired
|
||||
private ManualRedactionSurroundingTextService manualRedactionSurroundingTextService;
|
||||
|
||||
@MockBean
|
||||
private AmazonS3 amazonS3;
|
||||
|
||||
@MockBean
|
||||
private RabbitTemplate rabbitTemplate;
|
||||
|
||||
@MockBean
|
||||
private LegalBasisClient legalBasisClient;
|
||||
|
||||
private final Map<String, List<String>> dictionary = new HashMap<>();
|
||||
private final Map<String, List<String>> dossierDictionary = new HashMap<>();
|
||||
private final Map<String, List<String>> falsePositive = new HashMap<>();
|
||||
private final Map<String, List<String>> falseRecommendation = new HashMap<>();
|
||||
private final Map<String, String> typeColorMap = new HashMap<>();
|
||||
private final Map<String, Boolean> hintTypeMap = new HashMap<>();
|
||||
private final Map<String, Boolean> caseInSensitiveMap = new HashMap<>();
|
||||
private final Map<String, Boolean> recommendationTypeMap = new HashMap<>();
|
||||
private final Map<String, Integer> rankTypeMap = new HashMap<>();
|
||||
private final Colors colors = new Colors();
|
||||
private final Map<String, Long> reanlysisVersions = new HashMap<>();
|
||||
private final Set<String> deleted = new HashSet<>();
|
||||
|
||||
private final static String TEST_DOSSIER_TEMPLATE_ID = "123";
|
||||
private final static String TEST_DOSSIER_ID = "123";
|
||||
private final static String TEST_FILE_ID = "123";
|
||||
|
||||
@Configuration
|
||||
@EnableAutoConfiguration(exclude = {RabbitAutoConfiguration.class, StorageAutoConfiguration.class})
|
||||
@EnableAutoConfiguration(exclude = {RabbitAutoConfiguration.class})
|
||||
@ComponentScan(excludeFilters={@ComponentScan.Filter(type= FilterType.ASSIGNABLE_TYPE, value=StorageAutoConfiguration.class)})
|
||||
public static class RedactionIntegrationTestConfiguration {
|
||||
|
||||
@Bean
|
||||
@@ -201,18 +113,11 @@ public class RedactionIntegrationTest {
|
||||
}
|
||||
|
||||
|
||||
@AfterEach
|
||||
public void cleanupStorage() {
|
||||
|
||||
if (this.storageService instanceof FileSystemBackedStorageService) {
|
||||
((FileSystemBackedStorageService) this.storageService).clearStorage();
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
@BeforeEach
|
||||
public void stubClients() {
|
||||
|
||||
TenantContext.setTenantId("redaction");
|
||||
|
||||
when(rulesClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(0L);
|
||||
when(rulesClient.getRules(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(JSONPrimitive.of(RULES));
|
||||
|
||||
@@ -224,67 +129,26 @@ public class RedactionIntegrationTest {
|
||||
|
||||
when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(0L);
|
||||
when(dictionaryClient.getAllTypesForDossier(TEST_DOSSIER_ID, false)).thenReturn(List.of(Type.builder()
|
||||
.id(DOSSIER_REDACTIONS + ":" + TEST_DOSSIER_TEMPLATE_ID)
|
||||
.type(DOSSIER_REDACTIONS)
|
||||
.id(DOSSIER_REDACTIONS_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID)
|
||||
.type(DOSSIER_REDACTIONS_INDICATOR)
|
||||
.dossierTemplateId(TEST_DOSSIER_ID)
|
||||
.hexColor("#ffe187")
|
||||
.isHint(hintTypeMap.get(DOSSIER_REDACTIONS))
|
||||
.isCaseInsensitive(caseInSensitiveMap.get(DOSSIER_REDACTIONS))
|
||||
.isRecommendation(recommendationTypeMap.get(DOSSIER_REDACTIONS))
|
||||
.rank(rankTypeMap.get(DOSSIER_REDACTIONS))
|
||||
.isHint(hintTypeMap.get(DOSSIER_REDACTIONS_INDICATOR))
|
||||
.isCaseInsensitive(caseInSensitiveMap.get(DOSSIER_REDACTIONS_INDICATOR))
|
||||
.isRecommendation(recommendationTypeMap.get(DOSSIER_REDACTIONS_INDICATOR))
|
||||
.rank(rankTypeMap.get(DOSSIER_REDACTIONS_INDICATOR))
|
||||
.build()));
|
||||
|
||||
mockDictionaryCalls(null);
|
||||
mockDictionaryCalls(0L);
|
||||
|
||||
when(dictionaryClient.getColors(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(colors);
|
||||
}
|
||||
|
||||
|
||||
private void mockDictionaryCalls(Long version) {
|
||||
|
||||
when(dictionaryClient.getDictionaryForType(VERTEBRATE + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(VERTEBRATE,
|
||||
false));
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(ADDRESS, false));
|
||||
when(dictionaryClient.getDictionaryForType(AUTHOR + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(AUTHOR, false));
|
||||
when(dictionaryClient.getDictionaryForType(SPONSOR + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(SPONSOR, false));
|
||||
when(dictionaryClient.getDictionaryForType(NO_REDACTION_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(
|
||||
NO_REDACTION_INDICATOR,
|
||||
false));
|
||||
when(dictionaryClient.getDictionaryForType(REDACTION_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(
|
||||
REDACTION_INDICATOR,
|
||||
false));
|
||||
when(dictionaryClient.getDictionaryForType(HINT_ONLY + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(HINT_ONLY, false));
|
||||
when(dictionaryClient.getDictionaryForType(MUST_REDACT + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(MUST_REDACT,
|
||||
false));
|
||||
when(dictionaryClient.getDictionaryForType(PUBLISHED_INFORMATION + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(
|
||||
PUBLISHED_INFORMATION,
|
||||
false));
|
||||
when(dictionaryClient.getDictionaryForType(TEST_METHOD + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(TEST_METHOD,
|
||||
false));
|
||||
when(dictionaryClient.getDictionaryForType(PII + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(PII, false));
|
||||
when(dictionaryClient.getDictionaryForType(PURITY + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(PURITY, false));
|
||||
when(dictionaryClient.getDictionaryForType(IMAGE + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(IMAGE, false));
|
||||
when(dictionaryClient.getDictionaryForType(OCR + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(OCR, false));
|
||||
when(dictionaryClient.getDictionaryForType(LOGO + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(LOGO, false));
|
||||
when(dictionaryClient.getDictionaryForType(SIGNATURE + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(SIGNATURE, false));
|
||||
when(dictionaryClient.getDictionaryForType(FORMULA + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(FORMULA, false));
|
||||
when(dictionaryClient.getDictionaryForType(ROTATE_SIMPLE + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(ROTATE_SIMPLE,
|
||||
false));
|
||||
when(dictionaryClient.getDictionaryForType(DOSSIER_REDACTIONS + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(
|
||||
DOSSIER_REDACTIONS,
|
||||
true));
|
||||
when(dictionaryClient.getDictionaryForType(IMPORTED_REDACTION + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).then((Answer<Type>) invocation -> getDictionaryResponse(
|
||||
IMPORTED_REDACTION,
|
||||
true));
|
||||
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
public void test270Rotated() {
|
||||
|
||||
AnalyzeRequest request = prepareStorage("files/Minimal Examples/270Rotated.pdf");
|
||||
AnalyzeRequest request = uploadFileToStorage("files/Minimal Examples/270Rotated.pdf");
|
||||
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
|
||||
AnalyzeResult result = analyzeService.analyze(request);
|
||||
assertThat(result).isNotNull();
|
||||
@@ -295,7 +159,7 @@ public class RedactionIntegrationTest {
|
||||
@Disabled
|
||||
public void testLargeScannedFileOOM() {
|
||||
|
||||
AnalyzeRequest request = prepareStorage("scanned/VV-377031.pdf");
|
||||
AnalyzeRequest request = uploadFileToStorage("scanned/VV-377031.pdf");
|
||||
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
|
||||
AnalyzeResult result = analyzeService.analyze(request);
|
||||
assertThat(result).isNotNull();
|
||||
@@ -307,7 +171,7 @@ public class RedactionIntegrationTest {
|
||||
|
||||
long start = System.currentTimeMillis();
|
||||
|
||||
AnalyzeRequest request = prepareStorage("files/Minimal Examples/merge_images.pdf");
|
||||
AnalyzeRequest request = uploadFileToStorage("files/Minimal Examples/merge_images.pdf");
|
||||
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
|
||||
AnalyzeResult result = analyzeService.analyze(request);
|
||||
|
||||
@@ -321,7 +185,7 @@ public class RedactionIntegrationTest {
|
||||
|
||||
duplicates.forEach((key, value) -> assertThat(value.size()).isEqualTo(1));
|
||||
|
||||
dictionary.get(AUTHOR).add("Drinking water");
|
||||
dictionary.get(DICTIONARY_AUTHOR).add("Drinking water");
|
||||
when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(1L);
|
||||
|
||||
AnnotateResponse annotateResponse = annotationService.annotate(AnnotateRequest.builder().dossierId(TEST_DOSSIER_ID).fileId(TEST_FILE_ID).build());
|
||||
@@ -347,7 +211,7 @@ public class RedactionIntegrationTest {
|
||||
|
||||
// F. Lastname, J. Doe, M. Mustermann
|
||||
// Lastname M., Doe J., Mustermann M.
|
||||
AnalyzeRequest request = prepareStorage("files/Minimal Examples/ExpansionTest.pdf");
|
||||
AnalyzeRequest request = uploadFileToStorage("files/Minimal Examples/ExpansionTest.pdf");
|
||||
|
||||
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
|
||||
AnalyzeResult result = analyzeService.analyze(request);
|
||||
@@ -363,7 +227,7 @@ public class RedactionIntegrationTest {
|
||||
@Test
|
||||
public void titleExtraction() throws IOException {
|
||||
|
||||
AnalyzeRequest request = prepareStorage("files/new/APN3_Clean_6.1 (6.4.3.01-02)_Apple_211029.pdf");
|
||||
AnalyzeRequest request = uploadFileToStorage("files/new/APN3_Clean_6.1 (6.4.3.01-02)_Apple_211029.pdf");
|
||||
|
||||
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
|
||||
AnalyzeResult result = analyzeService.analyze(request);
|
||||
@@ -386,7 +250,7 @@ public class RedactionIntegrationTest {
|
||||
@Test
|
||||
public void testAddFileAttribute() {
|
||||
|
||||
AnalyzeRequest request = prepareStorage("files/RSS/01 - CGA100251 - Acute Oral Toxicity (Up and Down Procedure) - Rat (1).pdf");
|
||||
AnalyzeRequest request = uploadFileToStorage("files/RSS/01 - CGA100251 - Acute Oral Toxicity (Up and Down Procedure) - Rat (1).pdf");
|
||||
|
||||
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
|
||||
AnalyzeResult result = analyzeService.analyze(request);
|
||||
@@ -403,7 +267,7 @@ public class RedactionIntegrationTest {
|
||||
|
||||
System.out.println("testIgnoreHint");
|
||||
|
||||
AnalyzeRequest request = prepareStorage("files/new/test-ignore-hint.pdf");
|
||||
AnalyzeRequest request = uploadFileToStorage("files/new/test-ignore-hint.pdf");
|
||||
|
||||
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
|
||||
analyzeService.analyze(request);
|
||||
@@ -441,15 +305,11 @@ public class RedactionIntegrationTest {
|
||||
System.out.println("noExceptionShouldBeThrownForAnyFiles");
|
||||
ClassLoader loader = getClass().getClassLoader();
|
||||
URL url = loader.getResource("files");
|
||||
File[] files = new File(url.getPath()).listFiles();
|
||||
List<File> input = new ArrayList<>();
|
||||
for (File file : files) {
|
||||
input.addAll(getPathsRecursively(file));
|
||||
}
|
||||
for (File path : input) {
|
||||
Path path = Paths.get(URI.create(url.toString()));
|
||||
|
||||
AnalyzeRequest request = prepareStorage(path.getPath());
|
||||
System.out.println("Redacting file : " + path.getName());
|
||||
Files.walk(path).forEach(currentPath -> {
|
||||
AnalyzeRequest request = uploadFileToStorage(currentPath.toString());
|
||||
System.out.println("Redacting file : " + currentPath.getFileName());
|
||||
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
|
||||
|
||||
long fstart = System.currentTimeMillis();
|
||||
@@ -468,7 +328,7 @@ public class RedactionIntegrationTest {
|
||||
assertThat(entry.getValue().size()).isEqualTo(1);
|
||||
});
|
||||
|
||||
dictionary.get(AUTHOR).add("Drinking water");
|
||||
dictionary.get(DICTIONARY_AUTHOR).add("Drinking water");
|
||||
when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(1L);
|
||||
|
||||
long rstart = System.currentTimeMillis();
|
||||
@@ -476,8 +336,7 @@ public class RedactionIntegrationTest {
|
||||
|
||||
long rend = System.currentTimeMillis();
|
||||
System.out.println("reanalysis analysis duration: " + (rend - rstart));
|
||||
|
||||
}
|
||||
});
|
||||
|
||||
long end = System.currentTimeMillis();
|
||||
|
||||
@@ -493,7 +352,7 @@ public class RedactionIntegrationTest {
|
||||
String outputFileName = OsUtils.getTemporaryDirectory() + "/AnnotatedRedactionTestSeparatedRedaction.pdf";
|
||||
|
||||
long start = System.currentTimeMillis();
|
||||
AnalyzeRequest request = prepareStorage(fileName);
|
||||
AnalyzeRequest request = uploadFileToStorage(fileName);
|
||||
request.setExcludedPages(Set.of(1));
|
||||
|
||||
request.setFileAttributes(List.of(FileAttribute.builder()
|
||||
@@ -537,10 +396,10 @@ public class RedactionIntegrationTest {
|
||||
}
|
||||
assertThat(correctFound).isEqualTo(redactionLog.getRedactionLogEntry().size());
|
||||
|
||||
dictionary.get(AUTHOR).add("properties");
|
||||
dictionary.get(DICTIONARY_AUTHOR).add("properties");
|
||||
reanlysisVersions.put("properties", 1L);
|
||||
|
||||
dictionary.get(AUTHOR).add("physical");
|
||||
dictionary.get(DICTIONARY_AUTHOR).add("physical");
|
||||
reanlysisVersions.put("physical", 2L);
|
||||
|
||||
deleted.add("David Chubb");
|
||||
@@ -550,7 +409,7 @@ public class RedactionIntegrationTest {
|
||||
|
||||
when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(3L);
|
||||
|
||||
when(dictionaryClient.getDictionaryForType(VERTEBRATE, null)).thenReturn(getDictionaryResponse(VERTEBRATE, false));
|
||||
when(dictionaryClient.getDictionaryForType(VERTEBRATE_INDICATOR, null)).thenReturn(getDictionaryResponse(VERTEBRATE_INDICATOR, false));
|
||||
|
||||
start = System.currentTimeMillis();
|
||||
|
||||
@@ -583,7 +442,7 @@ public class RedactionIntegrationTest {
|
||||
|
||||
when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(4L);
|
||||
|
||||
when(dictionaryClient.getDictionaryForType(VERTEBRATE, null)).thenReturn(getDictionaryResponse(VERTEBRATE, false));
|
||||
when(dictionaryClient.getDictionaryForType(VERTEBRATE_INDICATOR, null)).thenReturn(getDictionaryResponse(VERTEBRATE_INDICATOR, false));
|
||||
|
||||
analyzeService.reanalyze(request);
|
||||
|
||||
@@ -599,19 +458,19 @@ public class RedactionIntegrationTest {
|
||||
String fileName = "files/new/test1S1T1.pdf";
|
||||
String outputFileName = OsUtils.getTemporaryDirectory() + "/Annotated.pdf";
|
||||
|
||||
AnalyzeRequest request = prepareStorage(fileName);
|
||||
AnalyzeRequest request = uploadFileToStorage(fileName);
|
||||
|
||||
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
|
||||
analyzeService.analyze(request);
|
||||
|
||||
dictionary.get(AUTHOR).add("report");
|
||||
dictionary.get(DICTIONARY_AUTHOR).add("report");
|
||||
reanlysisVersions.put("report", 2L);
|
||||
when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(2L);
|
||||
mockDictionaryCalls(0L);
|
||||
|
||||
analyzeService.reanalyze(request);
|
||||
|
||||
dictionary.get(AUTHOR).add("assessment report");
|
||||
dictionary.get(DICTIONARY_AUTHOR).add("assessment report");
|
||||
reanlysisVersions.put("assessment report", 3L);
|
||||
when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(3L);
|
||||
mockDictionaryCalls(2L);
|
||||
@@ -642,10 +501,12 @@ public class RedactionIntegrationTest {
|
||||
String outputFileName = OsUtils.getTemporaryDirectory() + "/Annotated.pdf";
|
||||
|
||||
ClassPathResource responseJson = new ClassPathResource("files/crafted_document.NER_ENTITIES.json");
|
||||
storageService.storeObject(TenantContext.getTenantId(), RedactionStorageService.StorageIdUtils.getStorageId(TEST_DOSSIER_ID, TEST_FILE_ID, FileType.NER_ENTITIES), responseJson.getInputStream());
|
||||
storageService.storeObject(TenantContext.getTenantId(),
|
||||
RedactionStorageService.StorageIdUtils.getStorageId(TEST_DOSSIER_ID, TEST_FILE_ID, FileType.NER_ENTITIES),
|
||||
responseJson.getInputStream());
|
||||
|
||||
long start = System.currentTimeMillis();
|
||||
AnalyzeRequest request = prepareStorage(fileName);
|
||||
AnalyzeRequest request = uploadFileToStorage(fileName);
|
||||
request.setExcludedPages(Set.of(1));
|
||||
|
||||
request.setFileAttributes(List.of(FileAttribute.builder()
|
||||
@@ -689,11 +550,11 @@ public class RedactionIntegrationTest {
|
||||
}
|
||||
assertThat(correctFound).isEqualTo(redactionLog.getRedactionLogEntry().size());
|
||||
|
||||
dictionary.get(AUTHOR).add("properties");
|
||||
dictionary.get(DICTIONARY_AUTHOR).add("properties");
|
||||
reanlysisVersions.put("properties", 1L);
|
||||
mockDictionaryCalls(0L);
|
||||
|
||||
dictionary.get(AUTHOR).add("physical");
|
||||
dictionary.get(DICTIONARY_AUTHOR).add("physical");
|
||||
reanlysisVersions.put("physical", 2L);
|
||||
|
||||
deleted.add("David Chubb");
|
||||
@@ -705,7 +566,7 @@ public class RedactionIntegrationTest {
|
||||
|
||||
when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(3L);
|
||||
|
||||
when(dictionaryClient.getDictionaryForType(VERTEBRATE, null)).thenReturn(getDictionaryResponse(VERTEBRATE, false));
|
||||
when(dictionaryClient.getDictionaryForType(VERTEBRATE_INDICATOR, null)).thenReturn(getDictionaryResponse(VERTEBRATE_INDICATOR, false));
|
||||
|
||||
start = System.currentTimeMillis();
|
||||
|
||||
@@ -739,7 +600,7 @@ public class RedactionIntegrationTest {
|
||||
|
||||
when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(4L);
|
||||
|
||||
when(dictionaryClient.getDictionaryForType(VERTEBRATE, null)).thenReturn(getDictionaryResponse(VERTEBRATE, false));
|
||||
when(dictionaryClient.getDictionaryForType(VERTEBRATE_INDICATOR, null)).thenReturn(getDictionaryResponse(VERTEBRATE_INDICATOR, false));
|
||||
|
||||
analyzeService.reanalyze(request);
|
||||
|
||||
@@ -762,7 +623,7 @@ public class RedactionIntegrationTest {
|
||||
};
|
||||
List<Type> types = objectMapper.readValue(typeResource.getInputStream(), typeRefForTypes);
|
||||
|
||||
AnalyzeRequest request = prepareStorage("files/new/PublishedInformationTest.pdf");
|
||||
AnalyzeRequest request = uploadFileToStorage("files/new/PublishedInformationTest.pdf");
|
||||
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
|
||||
ManualRedactions manualRedactions = new ManualRedactions();
|
||||
manualRedactions.getIdsToRemove()
|
||||
@@ -820,7 +681,7 @@ public class RedactionIntegrationTest {
|
||||
System.out.println("testTableRedaction");
|
||||
long start = System.currentTimeMillis();
|
||||
|
||||
AnalyzeRequest request = prepareStorage("files/Metolachlor/S-Metolachlor_RAR_02_Volume_2_2018-09-06.pdf");
|
||||
AnalyzeRequest request = uploadFileToStorage("files/Metolachlor/S-Metolachlor_RAR_02_Volume_2_2018-09-06.pdf");
|
||||
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
|
||||
AnalyzeResult result = analyzeService.analyze(request);
|
||||
|
||||
@@ -889,7 +750,7 @@ public class RedactionIntegrationTest {
|
||||
|
||||
long start = System.currentTimeMillis();
|
||||
|
||||
AnalyzeRequest request = prepareStorage("files/new/unicodeProblem.pdf");
|
||||
AnalyzeRequest request = uploadFileToStorage("files/new/unicodeProblem.pdf");
|
||||
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
|
||||
AnalyzeResult result = analyzeService.analyze(request);
|
||||
|
||||
@@ -911,7 +772,7 @@ public class RedactionIntegrationTest {
|
||||
System.out.println("testTableRedaction");
|
||||
long start = System.currentTimeMillis();
|
||||
|
||||
AnalyzeRequest request = prepareStorage("files/new/RotateTestFile.pdf");
|
||||
AnalyzeRequest request = uploadFileToStorage("files/new/RotateTestFile.pdf");
|
||||
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
|
||||
AnalyzeResult result = analyzeService.analyze(request);
|
||||
|
||||
@@ -937,7 +798,7 @@ public class RedactionIntegrationTest {
|
||||
System.out.println("testTableRedaction");
|
||||
long start = System.currentTimeMillis();
|
||||
|
||||
AnalyzeRequest request = prepareStorage("files/new/RotateTestFileSimple.pdf");
|
||||
AnalyzeRequest request = uploadFileToStorage("files/new/RotateTestFileSimple.pdf");
|
||||
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
|
||||
AnalyzeResult result = analyzeService.analyze(request);
|
||||
|
||||
@@ -959,7 +820,7 @@ public class RedactionIntegrationTest {
|
||||
System.out.println("testTableHeader");
|
||||
long start = System.currentTimeMillis();
|
||||
|
||||
AnalyzeRequest request = prepareStorage("files/Minimal Examples/NoHeaderTable.pdf");
|
||||
AnalyzeRequest request = uploadFileToStorage("files/Minimal Examples/NoHeaderTable.pdf");
|
||||
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
|
||||
AnalyzeResult result = analyzeService.analyze(request);
|
||||
|
||||
@@ -994,7 +855,7 @@ public class RedactionIntegrationTest {
|
||||
|
||||
long start = System.currentTimeMillis();
|
||||
|
||||
AnalyzeRequest request = prepareStorage("files/new/S157.pdf");
|
||||
AnalyzeRequest request = uploadFileToStorage("files/new/S157.pdf");
|
||||
|
||||
ManualRedactions manualRedactions = new ManualRedactions();
|
||||
|
||||
@@ -1070,7 +931,7 @@ public class RedactionIntegrationTest {
|
||||
manualRedactionEntry.setPositions(List.of(Rectangle.builder().topLeftX(375.61096f).topLeftY(241.282f).width(7.648041f).height(43.72262f).page(1).build(),
|
||||
Rectangle.builder().topLeftX(384.83517f).topLeftY(241.282f).width(7.648041f).height(17.043358f).page(1).build()));
|
||||
|
||||
AnalyzeRequest request = prepareStorage(pdfFile);
|
||||
AnalyzeRequest request = uploadFileToStorage(pdfFile);
|
||||
request.setManualRedactions(manualRedactions);
|
||||
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
|
||||
AnalyzeResult result = analyzeService.analyze(request);
|
||||
@@ -1100,14 +961,10 @@ public class RedactionIntegrationTest {
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@Test
|
||||
public void phantomCellsDocumentTest() throws IOException {
|
||||
|
||||
AnalyzeRequest request = prepareStorage("files/Minimal Examples/Phantom Cells.pdf");
|
||||
AnalyzeRequest request = uploadFileToStorage("files/Minimal Examples/Phantom Cells.pdf");
|
||||
|
||||
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
|
||||
AnalyzeResult result = analyzeService.analyze(request);
|
||||
@@ -1127,7 +984,7 @@ public class RedactionIntegrationTest {
|
||||
|
||||
long start = System.currentTimeMillis();
|
||||
|
||||
AnalyzeRequest request = prepareStorage("files/Minimal Examples/sponsor_companies.pdf");
|
||||
AnalyzeRequest request = uploadFileToStorage("files/Minimal Examples/sponsor_companies.pdf");
|
||||
|
||||
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
|
||||
AnalyzeResult result = analyzeService.analyze(request);
|
||||
@@ -1189,7 +1046,7 @@ public class RedactionIntegrationTest {
|
||||
|
||||
// manualRedactions.getEntriesToAdd().add(manualRedactionEntry);
|
||||
|
||||
AnalyzeRequest request = prepareStorage(pdfFile);
|
||||
AnalyzeRequest request = uploadFileToStorage(pdfFile);
|
||||
request.setManualRedactions(manualRedactions);
|
||||
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
|
||||
AnalyzeResult result = analyzeService.analyze(request);
|
||||
@@ -1245,7 +1102,7 @@ public class RedactionIntegrationTest {
|
||||
System.out.println("expandByRegex");
|
||||
long start = System.currentTimeMillis();
|
||||
|
||||
AnalyzeRequest request = prepareStorage("files/Metolachlor/S-Metolachlor_RAR_02_Volume_2_2018-09-06.pdf");
|
||||
AnalyzeRequest request = uploadFileToStorage("files/Metolachlor/S-Metolachlor_RAR_02_Volume_2_2018-09-06.pdf");
|
||||
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
|
||||
AnalyzeResult result = analyzeService.analyze(request);
|
||||
|
||||
@@ -1300,7 +1157,7 @@ public class RedactionIntegrationTest {
|
||||
manualRedactions.getEntriesToAdd().add(manualRedactionEntry2);
|
||||
manualRedactions.getEntriesToAdd().add(manualRedactionEntry3);
|
||||
|
||||
AnalyzeRequest request = prepareStorage(pdfFile);
|
||||
AnalyzeRequest request = uploadFileToStorage(pdfFile);
|
||||
request.setManualRedactions(manualRedactions);
|
||||
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
|
||||
AnalyzeResult result = analyzeService.analyze(request);
|
||||
@@ -1324,280 +1181,15 @@ public class RedactionIntegrationTest {
|
||||
}
|
||||
|
||||
|
||||
private void loadDictionaryForTest() {
|
||||
|
||||
dictionary.computeIfAbsent(AUTHOR, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/CBI_author.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(SPONSOR, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/CBI_sponsor.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(VERTEBRATE, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/vertebrate.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(ADDRESS, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/CBI_address.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(NO_REDACTION_INDICATOR, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/no_redaction_indicator.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(REDACTION_INDICATOR, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/redaction_indicator.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(HINT_ONLY, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/hint_only.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(MUST_REDACT, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/must_redact.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(PUBLISHED_INFORMATION, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/published_information.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(TEST_METHOD, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/test_method.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(PII, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/PII.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(PURITY, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/purity.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(IMAGE, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/empty.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(OCR, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/empty.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(LOGO, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/empty.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(SIGNATURE, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/empty.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(FORMULA, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/empty.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
dossierDictionary.computeIfAbsent(DOSSIER_REDACTIONS, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/dossier_redactions.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
dossierDictionary.put(IMPORTED_REDACTION, new ArrayList<>());
|
||||
|
||||
falsePositive.computeIfAbsent(PII, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/PII_false_positive.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
|
||||
}
|
||||
|
||||
|
||||
private void loadOnlyDictionaryForSimpleFile() {
|
||||
|
||||
dictionary.clear();
|
||||
dictionary.computeIfAbsent(ROTATE_SIMPLE, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/RotateTestFileSimple.txt").stream().map(this::cleanDictionaryEntry).collect(Collectors.toSet()));
|
||||
}
|
||||
|
||||
|
||||
private static String loadFromClassPath(String path) {
|
||||
|
||||
URL resource = ResourceLoader.class.getClassLoader().getResource(path);
|
||||
if (resource == null) {
|
||||
throw new IllegalArgumentException("could not load classpath resource: drools/rules.drl");
|
||||
}
|
||||
try (BufferedReader br = new BufferedReader(new InputStreamReader(resource.openStream(), StandardCharsets.UTF_8))) {
|
||||
StringBuilder sb = new StringBuilder();
|
||||
String str;
|
||||
while ((str = br.readLine()) != null) {
|
||||
sb.append(str).append("\n");
|
||||
}
|
||||
return sb.toString();
|
||||
} catch (IOException e) {
|
||||
throw new IllegalArgumentException("could not load classpath resource: " + path, e);
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
private List<File> getPathsRecursively(File path) {
|
||||
|
||||
List<File> result = new ArrayList<>();
|
||||
if (path == null || path.listFiles() == null) {
|
||||
return result;
|
||||
}
|
||||
for (File f : path.listFiles()) {
|
||||
if (f.isFile()) {
|
||||
result.add(f);
|
||||
} else {
|
||||
result.addAll(getPathsRecursively(f));
|
||||
}
|
||||
}
|
||||
return result;
|
||||
|
||||
}
|
||||
|
||||
|
||||
private void loadTypeForTest() {
|
||||
|
||||
typeColorMap.put(VERTEBRATE, "#ff85f7");
|
||||
typeColorMap.put(ADDRESS, "#ffe187");
|
||||
typeColorMap.put(AUTHOR, "#ffe187");
|
||||
typeColorMap.put(SPONSOR, "#85ebff");
|
||||
typeColorMap.put(NO_REDACTION_INDICATOR, "#be85ff");
|
||||
typeColorMap.put(REDACTION_INDICATOR, "#caff85");
|
||||
typeColorMap.put(HINT_ONLY, "#abc0c4");
|
||||
typeColorMap.put(MUST_REDACT, "#fab4c0");
|
||||
typeColorMap.put(PUBLISHED_INFORMATION, "#85ebff");
|
||||
typeColorMap.put(TEST_METHOD, "#91fae8");
|
||||
typeColorMap.put(PII, "#66ccff");
|
||||
typeColorMap.put(PURITY, "#ffe187");
|
||||
typeColorMap.put(IMAGE, "#fcc5fb");
|
||||
typeColorMap.put(OCR, "#fcc5fb");
|
||||
typeColorMap.put(LOGO, "#ffe187");
|
||||
typeColorMap.put(FORMULA, "#ffe187");
|
||||
typeColorMap.put(SIGNATURE, "#ffe187");
|
||||
typeColorMap.put(IMPORTED_REDACTION, "#fcfbe6");
|
||||
typeColorMap.put(ROTATE_SIMPLE, "#66ccff");
|
||||
|
||||
hintTypeMap.put(VERTEBRATE, true);
|
||||
hintTypeMap.put(ADDRESS, false);
|
||||
hintTypeMap.put(AUTHOR, false);
|
||||
hintTypeMap.put(SPONSOR, false);
|
||||
hintTypeMap.put(NO_REDACTION_INDICATOR, true);
|
||||
hintTypeMap.put(REDACTION_INDICATOR, true);
|
||||
hintTypeMap.put(HINT_ONLY, true);
|
||||
hintTypeMap.put(MUST_REDACT, true);
|
||||
hintTypeMap.put(PUBLISHED_INFORMATION, true);
|
||||
hintTypeMap.put(TEST_METHOD, true);
|
||||
hintTypeMap.put(PII, false);
|
||||
hintTypeMap.put(PURITY, false);
|
||||
hintTypeMap.put(IMAGE, true);
|
||||
hintTypeMap.put(OCR, true);
|
||||
hintTypeMap.put(FORMULA, false);
|
||||
hintTypeMap.put(LOGO, false);
|
||||
hintTypeMap.put(SIGNATURE, false);
|
||||
hintTypeMap.put(DOSSIER_REDACTIONS, false);
|
||||
hintTypeMap.put(IMPORTED_REDACTION, false);
|
||||
hintTypeMap.put(ROTATE_SIMPLE, false);
|
||||
|
||||
caseInSensitiveMap.put(VERTEBRATE, true);
|
||||
caseInSensitiveMap.put(ADDRESS, false);
|
||||
caseInSensitiveMap.put(AUTHOR, false);
|
||||
caseInSensitiveMap.put(SPONSOR, false);
|
||||
caseInSensitiveMap.put(NO_REDACTION_INDICATOR, true);
|
||||
caseInSensitiveMap.put(REDACTION_INDICATOR, true);
|
||||
caseInSensitiveMap.put(HINT_ONLY, true);
|
||||
caseInSensitiveMap.put(MUST_REDACT, true);
|
||||
caseInSensitiveMap.put(PUBLISHED_INFORMATION, true);
|
||||
caseInSensitiveMap.put(TEST_METHOD, false);
|
||||
caseInSensitiveMap.put(PII, false);
|
||||
caseInSensitiveMap.put(PURITY, false);
|
||||
caseInSensitiveMap.put(IMAGE, true);
|
||||
caseInSensitiveMap.put(OCR, true);
|
||||
caseInSensitiveMap.put(SIGNATURE, true);
|
||||
caseInSensitiveMap.put(LOGO, true);
|
||||
caseInSensitiveMap.put(FORMULA, true);
|
||||
caseInSensitiveMap.put(DOSSIER_REDACTIONS, false);
|
||||
caseInSensitiveMap.put(IMPORTED_REDACTION, false);
|
||||
caseInSensitiveMap.put(ROTATE_SIMPLE, true);
|
||||
|
||||
recommendationTypeMap.put(VERTEBRATE, false);
|
||||
recommendationTypeMap.put(ADDRESS, false);
|
||||
recommendationTypeMap.put(AUTHOR, false);
|
||||
recommendationTypeMap.put(SPONSOR, false);
|
||||
recommendationTypeMap.put(NO_REDACTION_INDICATOR, false);
|
||||
recommendationTypeMap.put(REDACTION_INDICATOR, false);
|
||||
recommendationTypeMap.put(HINT_ONLY, false);
|
||||
recommendationTypeMap.put(MUST_REDACT, false);
|
||||
recommendationTypeMap.put(PUBLISHED_INFORMATION, false);
|
||||
recommendationTypeMap.put(TEST_METHOD, false);
|
||||
recommendationTypeMap.put(PII, false);
|
||||
recommendationTypeMap.put(PURITY, false);
|
||||
recommendationTypeMap.put(IMAGE, false);
|
||||
recommendationTypeMap.put(OCR, false);
|
||||
recommendationTypeMap.put(FORMULA, false);
|
||||
recommendationTypeMap.put(SIGNATURE, false);
|
||||
recommendationTypeMap.put(LOGO, false);
|
||||
recommendationTypeMap.put(DOSSIER_REDACTIONS, false);
|
||||
recommendationTypeMap.put(IMPORTED_REDACTION, false);
|
||||
recommendationTypeMap.put(ROTATE_SIMPLE, false);
|
||||
|
||||
rankTypeMap.put(PURITY, 155);
|
||||
rankTypeMap.put(PII, 150);
|
||||
rankTypeMap.put(ADDRESS, 140);
|
||||
rankTypeMap.put(AUTHOR, 130);
|
||||
rankTypeMap.put(SPONSOR, 120);
|
||||
rankTypeMap.put(VERTEBRATE, 110);
|
||||
rankTypeMap.put(MUST_REDACT, 100);
|
||||
rankTypeMap.put(REDACTION_INDICATOR, 90);
|
||||
rankTypeMap.put(NO_REDACTION_INDICATOR, 80);
|
||||
rankTypeMap.put(PUBLISHED_INFORMATION, 70);
|
||||
rankTypeMap.put(TEST_METHOD, 60);
|
||||
rankTypeMap.put(HINT_ONLY, 50);
|
||||
rankTypeMap.put(IMAGE, 30);
|
||||
rankTypeMap.put(OCR, 29);
|
||||
rankTypeMap.put(LOGO, 28);
|
||||
rankTypeMap.put(SIGNATURE, 27);
|
||||
rankTypeMap.put(FORMULA, 26);
|
||||
rankTypeMap.put(DOSSIER_REDACTIONS, 200);
|
||||
rankTypeMap.put(IMPORTED_REDACTION, 200);
|
||||
rankTypeMap.put(ROTATE_SIMPLE, 150);
|
||||
|
||||
colors.setSkippedColor("#cccccc");
|
||||
colors.setRequestAddColor("#04b093");
|
||||
colors.setRequestRemoveColor("#04b093");
|
||||
}
|
||||
|
||||
|
||||
@SneakyThrows
|
||||
private void loadNerForTest() {
|
||||
|
||||
ClassPathResource responseJson = new ClassPathResource("files/ner_response.json");
|
||||
storageService.storeObject(TenantContext.getTenantId(), RedactionStorageService.StorageIdUtils.getStorageId(TEST_DOSSIER_ID, TEST_FILE_ID, FileType.NER_ENTITIES), responseJson.getInputStream());
|
||||
}
|
||||
|
||||
|
||||
private List<Type> getTypeResponse() {
|
||||
|
||||
return typeColorMap.entrySet()
|
||||
.stream()
|
||||
.map(typeColor -> Type.builder()
|
||||
.id(typeColor.getKey() + ":" + TEST_DOSSIER_TEMPLATE_ID)
|
||||
.type(typeColor.getKey())
|
||||
.dossierTemplateId(TEST_DOSSIER_TEMPLATE_ID)
|
||||
.hexColor(typeColor.getValue())
|
||||
.isHint(hintTypeMap.get(typeColor.getKey()))
|
||||
.isCaseInsensitive(caseInSensitiveMap.get(typeColor.getKey()))
|
||||
.isRecommendation(recommendationTypeMap.get(typeColor.getKey()))
|
||||
.rank(rankTypeMap.get(typeColor.getKey()))
|
||||
.build())
|
||||
|
||||
.collect(Collectors.toList());
|
||||
}
|
||||
|
||||
|
||||
private Type getDictionaryResponse(String type, boolean isDossierDictionary) {
|
||||
|
||||
return Type.builder()
|
||||
.id(type + ":" + TEST_DOSSIER_TEMPLATE_ID)
|
||||
.hexColor(typeColorMap.get(type))
|
||||
.entries(isDossierDictionary ? toDictionaryEntry(dossierDictionary.get(type)) : toDictionaryEntry(dictionary.get(type)))
|
||||
.falsePositiveEntries(falsePositive.containsKey(type) ? toDictionaryEntry(falsePositive.get(type)) : new ArrayList<>())
|
||||
.falseRecommendationEntries(falseRecommendation.containsKey(type) ? toDictionaryEntry(falseRecommendation.get(type)) : new ArrayList<>())
|
||||
.isHint(hintTypeMap.get(type))
|
||||
.isCaseInsensitive(caseInSensitiveMap.get(type))
|
||||
.isRecommendation(recommendationTypeMap.get(type))
|
||||
.rank(rankTypeMap.get(type))
|
||||
.build();
|
||||
}
|
||||
|
||||
|
||||
private String cleanDictionaryEntry(String entry) {
|
||||
|
||||
return TextNormalizationUtilities.removeHyphenLineBreaks(entry).replaceAll("\\n", " ");
|
||||
}
|
||||
|
||||
|
||||
private List<DictionaryEntry> toDictionaryEntry(List<String> entries) {
|
||||
|
||||
if (entries == null) {
|
||||
entries = Collections.emptyList();
|
||||
}
|
||||
|
||||
List<DictionaryEntry> dictionaryEntries = new ArrayList<>();
|
||||
entries.forEach(entry -> {
|
||||
dictionaryEntries.add(DictionaryEntry.builder().value(entry).version(reanlysisVersions.getOrDefault(entry, 0L)).deleted(deleted.contains(entry)).build());
|
||||
});
|
||||
return dictionaryEntries;
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
public void testImportedRedactions() throws IOException {
|
||||
|
||||
String outputFileName = OsUtils.getTemporaryDirectory() + "/Annotated.pdf";
|
||||
ClassPathResource importedRedactions = new ClassPathResource("files/ImportedRedactions/RotateTestFile_without_highlights.IMPORTED_REDACTIONS.json");
|
||||
|
||||
AnalyzeRequest request = prepareStorage("files/ImportedRedactions/RotateTestFile_without_highlights.pdf");
|
||||
storageService.storeObject(TenantContext.getTenantId(), RedactionStorageService.StorageIdUtils.getStorageId(TEST_DOSSIER_ID, TEST_FILE_ID, FileType.IMPORTED_REDACTIONS),
|
||||
AnalyzeRequest request = uploadFileToStorage("files/ImportedRedactions/RotateTestFile_without_highlights.pdf");
|
||||
storageService.storeObject(TenantContext.getTenantId(),
|
||||
RedactionStorageService.StorageIdUtils.getStorageId(TEST_DOSSIER_ID, TEST_FILE_ID, FileType.IMPORTED_REDACTIONS),
|
||||
importedRedactions.getInputStream());
|
||||
|
||||
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
|
||||
@@ -1628,17 +1220,17 @@ public class RedactionIntegrationTest {
|
||||
@Test
|
||||
public void testExpandByPrefixRegEx() throws IOException {
|
||||
|
||||
assertThat(dictionary.get(AUTHOR)).contains("Robinson");
|
||||
assertThat(dictionary.get(AUTHOR)).doesNotContain("Mrs. Robinson");
|
||||
assertThat(dictionary.get(AUTHOR)).contains("Bojangles");
|
||||
assertThat(dictionary.get(AUTHOR)).doesNotContain("Mr. Bojangles");
|
||||
assertThat(dictionary.get(AUTHOR)).contains("Tambourine Man");
|
||||
assertThat(dictionary.get(AUTHOR)).doesNotContain("Mr. Tambourine Man");
|
||||
assertThat(dictionary.get(DICTIONARY_AUTHOR)).contains("Robinson");
|
||||
assertThat(dictionary.get(DICTIONARY_AUTHOR)).doesNotContain("Mrs. Robinson");
|
||||
assertThat(dictionary.get(DICTIONARY_AUTHOR)).contains("Bojangles");
|
||||
assertThat(dictionary.get(DICTIONARY_AUTHOR)).doesNotContain("Mr. Bojangles");
|
||||
assertThat(dictionary.get(DICTIONARY_AUTHOR)).contains("Tambourine Man");
|
||||
assertThat(dictionary.get(DICTIONARY_AUTHOR)).doesNotContain("Mr. Tambourine Man");
|
||||
|
||||
String fileName = "files/mr-mrs.pdf";
|
||||
String outputFileName = OsUtils.getTemporaryDirectory() + "/Annotated.pdf";
|
||||
|
||||
AnalyzeRequest request = prepareStorage(fileName);
|
||||
AnalyzeRequest request = uploadFileToStorage(fileName);
|
||||
|
||||
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
|
||||
analyzeService.analyze(request);
|
||||
@@ -1657,39 +1249,4 @@ public class RedactionIntegrationTest {
|
||||
assertThat(values).contains("Mr. Tambourine Man");
|
||||
}
|
||||
|
||||
|
||||
@SneakyThrows
|
||||
private AnalyzeRequest prepareStorage(InputStream fileStream, InputStream cvServiceResponseFileStream) {
|
||||
|
||||
AnalyzeRequest request = AnalyzeRequest.builder()
|
||||
.dossierTemplateId(TEST_DOSSIER_TEMPLATE_ID)
|
||||
.dossierId(TEST_DOSSIER_ID)
|
||||
.fileId(TEST_FILE_ID)
|
||||
.lastProcessed(OffsetDateTime.now())
|
||||
.build();
|
||||
|
||||
storageService.storeObject(TenantContext.getTenantId(), RedactionStorageService.StorageIdUtils.getStorageId(TEST_DOSSIER_ID, TEST_FILE_ID, FileType.TABLES), cvServiceResponseFileStream);
|
||||
storageService.storeObject(TenantContext.getTenantId(), RedactionStorageService.StorageIdUtils.getStorageId(TEST_DOSSIER_ID, TEST_FILE_ID, FileType.ORIGIN), fileStream);
|
||||
|
||||
return request;
|
||||
|
||||
}
|
||||
|
||||
|
||||
@SneakyThrows
|
||||
private AnalyzeRequest prepareStorage(String file) {
|
||||
|
||||
return prepareStorage(file, "files/cv_service_empty_response.json");
|
||||
}
|
||||
|
||||
|
||||
@SneakyThrows
|
||||
private AnalyzeRequest prepareStorage(String file, String cvServiceResponseFile) {
|
||||
|
||||
ClassPathResource pdfFileResource = new ClassPathResource(file);
|
||||
ClassPathResource cvServiceResponseFileResource = new ClassPathResource(cvServiceResponseFile);
|
||||
|
||||
return prepareStorage(pdfFileResource.getInputStream(), cvServiceResponseFileResource.getInputStream());
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
+176
@@ -0,0 +1,176 @@
|
||||
package com.iqser.red.service.redaction.v1.server;
|
||||
|
||||
import static org.assertj.core.api.Assertions.assertThat;
|
||||
import static org.mockito.Mockito.when;
|
||||
|
||||
import java.util.List;
|
||||
|
||||
import org.junit.jupiter.api.BeforeEach;
|
||||
import org.junit.jupiter.api.Test;
|
||||
import org.junit.jupiter.api.extension.ExtendWith;
|
||||
import org.springframework.boot.autoconfigure.EnableAutoConfiguration;
|
||||
import org.springframework.boot.autoconfigure.amqp.RabbitAutoConfiguration;
|
||||
import org.springframework.boot.test.context.SpringBootTest;
|
||||
import org.springframework.context.annotation.Bean;
|
||||
import org.springframework.context.annotation.ComponentScan;
|
||||
import org.springframework.context.annotation.Configuration;
|
||||
import org.springframework.context.annotation.FilterType;
|
||||
import org.springframework.context.annotation.Import;
|
||||
import org.springframework.context.annotation.Primary;
|
||||
import org.springframework.test.context.junit.jupiter.SpringExtension;
|
||||
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.AnalyzeRequest;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.common.JSONPrimitive;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.dossiertemplate.type.Type;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.redactionlog.Engine;
|
||||
import com.iqser.red.service.persistence.service.v1.api.shared.model.redactionlog.RedactionLogEntry;
|
||||
import com.iqser.red.service.redaction.v1.model.StructureAnalyzeRequest;
|
||||
import com.iqser.red.service.redaction.v1.server.multitenancy.TenantContext;
|
||||
import com.iqser.red.storage.commons.StorageAutoConfiguration;
|
||||
import com.iqser.red.storage.commons.service.StorageService;
|
||||
|
||||
import lombok.SneakyThrows;
|
||||
|
||||
@ExtendWith(SpringExtension.class)
|
||||
@SpringBootTest(classes = Application.class, webEnvironment = SpringBootTest.WebEnvironment.RANDOM_PORT)
|
||||
@Import(RedactionIntegrationV2Test.RedactionIntegrationTestConfiguration.class)
|
||||
|
||||
public class RedactionIntegrationV2Test extends AbstractRedactionIntegrationTest {
|
||||
|
||||
private static final String RULES = loadFromClassPath("drools/rules_v2.drl");
|
||||
|
||||
@Configuration
|
||||
@EnableAutoConfiguration(exclude = {RabbitAutoConfiguration.class})
|
||||
@ComponentScan(excludeFilters = {@ComponentScan.Filter(type = FilterType.ASSIGNABLE_TYPE, value = StorageAutoConfiguration.class)})
|
||||
static class RedactionIntegrationTestConfiguration {
|
||||
|
||||
@Bean
|
||||
@Primary
|
||||
public StorageService inmemoryStorage() {
|
||||
|
||||
return new FileSystemBackedStorageService();
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
|
||||
@BeforeEach
|
||||
public void stubClients() {
|
||||
|
||||
TenantContext.setTenantId("redaction");
|
||||
|
||||
when(rulesClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(0L);
|
||||
when(rulesClient.getRules(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(JSONPrimitive.of(RULES));
|
||||
|
||||
loadDictionaryForTest();
|
||||
loadTypeForTest();
|
||||
loadNerForTest();
|
||||
when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(0L);
|
||||
when(dictionaryClient.getAllTypesForDossierTemplate(TEST_DOSSIER_TEMPLATE_ID, false)).thenReturn(getTypeResponse());
|
||||
|
||||
when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(0L);
|
||||
when(dictionaryClient.getAllTypesForDossier(TEST_DOSSIER_ID, false)).thenReturn(List.of(Type.builder()
|
||||
.id(DOSSIER_REDACTIONS_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID)
|
||||
.type(DOSSIER_REDACTIONS_INDICATOR)
|
||||
.dossierTemplateId(TEST_DOSSIER_ID)
|
||||
.hexColor("#ffe187")
|
||||
.isHint(hintTypeMap.get(DOSSIER_REDACTIONS_INDICATOR))
|
||||
.isCaseInsensitive(caseInSensitiveMap.get(DOSSIER_REDACTIONS_INDICATOR))
|
||||
.isRecommendation(recommendationTypeMap.get(DOSSIER_REDACTIONS_INDICATOR))
|
||||
.rank(rankTypeMap.get(DOSSIER_REDACTIONS_INDICATOR))
|
||||
.build()));
|
||||
|
||||
mockDictionaryCalls(null);
|
||||
|
||||
when(dictionaryClient.getColors(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(colors);
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* The case in this test: One term, 'Dr. Alan Miller', is found by PII-Rule and is in the PII-dictionary
|
||||
* as well as in the PII-false-positive-list - and in the CBI-author dictionary.
|
||||
* It gets redacted, as the PII-finding is false positive and so the CBI-author entry is effective,
|
||||
* independent of the entity-rank
|
||||
*/
|
||||
@Test
|
||||
@SneakyThrows
|
||||
public void testTermIsInTwoDictionariesAndInOneFalsePositive() {
|
||||
|
||||
AnalyzeRequest request = uploadFileToStorage("files/new/simplified2.pdf");
|
||||
|
||||
String entryAuthorAndPIIDictionary = "Dr. Alan Miller";
|
||||
|
||||
dictionary.get(DICTIONARY_AUTHOR).add(entryAuthorAndPIIDictionary);
|
||||
dictionary.put(DICTIONARY_PII, List.of(entryAuthorAndPIIDictionary));
|
||||
|
||||
String entryPIIFalsePositive = "Dr. Alan Miller COMPLETION DATE:";
|
||||
|
||||
falsePositive.put(DICTIONARY_PII, List.of(entryPIIFalsePositive));
|
||||
|
||||
reanlysisVersions.put(entryAuthorAndPIIDictionary, 1L);
|
||||
reanlysisVersions.put(entryPIIFalsePositive, 1L);
|
||||
|
||||
when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(3L);
|
||||
mockDictionaryCalls(0L);
|
||||
|
||||
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
|
||||
analyzeService.analyze(request);
|
||||
|
||||
var redactionLog = redactionStorageService.getRedactionLog(TEST_DOSSIER_ID, TEST_FILE_ID);
|
||||
|
||||
assertThat(redactionLog.getRedactionLogEntry().size()).isEqualTo(1);
|
||||
|
||||
RedactionLogEntry redactionLogEntry = redactionLog.getRedactionLogEntry().get(0);
|
||||
|
||||
assertThat(redactionLogEntry.getType()).isEqualTo(DICTIONARY_AUTHOR);
|
||||
assertThat(redactionLogEntry.getValue()).isEqualTo(entryAuthorAndPIIDictionary);
|
||||
assertThat(redactionLogEntry.isRedacted()).isEqualTo(true);
|
||||
assertThat(redactionLogEntry.isRecommendation()).isEqualTo(false);
|
||||
assertThat(redactionLogEntry.isFalsePositive()).isEqualTo(false);
|
||||
assertThat(redactionLogEntry.isExcluded()).isEqualTo(false);
|
||||
assertThat(redactionLogEntry.isDictionaryEntry()).isEqualTo(true);
|
||||
|
||||
assertThat(redactionLogEntry.getEngines().size()).isEqualTo(1);
|
||||
assertThat(redactionLogEntry.getEngines().contains(Engine.DICTIONARY)).isEqualTo(true);
|
||||
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* The case in this test: The term 'Evans P.G.' is very close to a table-cell. It will get redacted nevertheless.
|
||||
*/
|
||||
@Test
|
||||
@SneakyThrows
|
||||
public void testTermGetsRedactedEvenItsCloseToCellBorder() {
|
||||
|
||||
AnalyzeRequest request = uploadFileToStorage("files/SinglePages/VV-931175_Page1.pdf");
|
||||
|
||||
dictionary.clear();
|
||||
falsePositive.clear();
|
||||
|
||||
String entryAuthorDictionary = "Evans P.G.";
|
||||
dictionary.put(DICTIONARY_AUTHOR, List.of(entryAuthorDictionary));
|
||||
|
||||
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
|
||||
analyzeService.analyze(request);
|
||||
|
||||
var redactionLog = redactionStorageService.getRedactionLog(TEST_DOSSIER_ID, TEST_FILE_ID);
|
||||
|
||||
assertThat(redactionLog.getRedactionLogEntry().size()).isEqualTo(1);
|
||||
|
||||
RedactionLogEntry redactionLogEntry = redactionLog.getRedactionLogEntry().get(0);
|
||||
|
||||
assertThat(redactionLogEntry.getType()).isEqualTo(DICTIONARY_AUTHOR);
|
||||
assertThat(redactionLogEntry.getValue()).isEqualTo(entryAuthorDictionary);
|
||||
assertThat(redactionLogEntry.isRedacted()).isEqualTo(true);
|
||||
assertThat(redactionLogEntry.isRecommendation()).isEqualTo(false);
|
||||
assertThat(redactionLogEntry.isFalsePositive()).isEqualTo(false);
|
||||
assertThat(redactionLogEntry.isExcluded()).isEqualTo(false);
|
||||
assertThat(redactionLogEntry.isDictionaryEntry()).isEqualTo(true);
|
||||
|
||||
assertThat(redactionLogEntry.getEngines().size()).isEqualTo(1);
|
||||
assertThat(redactionLogEntry.getEngines().contains(Engine.DICTIONARY)).isEqualTo(true);
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
+5
-1
@@ -46,7 +46,9 @@ import org.springframework.boot.autoconfigure.amqp.RabbitAutoConfiguration;
|
||||
import org.springframework.boot.test.context.SpringBootTest;
|
||||
import org.springframework.boot.test.mock.mockito.MockBean;
|
||||
import org.springframework.context.annotation.Bean;
|
||||
import org.springframework.context.annotation.ComponentScan;
|
||||
import org.springframework.context.annotation.Configuration;
|
||||
import org.springframework.context.annotation.FilterType;
|
||||
import org.springframework.context.annotation.Import;
|
||||
import org.springframework.context.annotation.Primary;
|
||||
import org.springframework.core.io.ClassPathResource;
|
||||
@@ -245,6 +247,7 @@ public class RulesTest {
|
||||
@BeforeEach
|
||||
public void stubClients() {
|
||||
|
||||
TenantContext.setTenantId("redaction");
|
||||
objectMapper.registerModule(new JavaTimeModule());
|
||||
objectMapper.configure(DeserializationFeature.FAIL_ON_UNKNOWN_PROPERTIES, false);
|
||||
|
||||
@@ -801,7 +804,8 @@ public class RulesTest {
|
||||
|
||||
|
||||
@Configuration
|
||||
@EnableAutoConfiguration(exclude = {RabbitAutoConfiguration.class, StorageAutoConfiguration.class})
|
||||
@EnableAutoConfiguration(exclude = {RabbitAutoConfiguration.class})
|
||||
@ComponentScan(excludeFilters={@ComponentScan.Filter(type= FilterType.ASSIGNABLE_TYPE, value=StorageAutoConfiguration.class)})
|
||||
public static class RulesTestConfiguration {
|
||||
|
||||
@Bean
|
||||
|
||||
-12
@@ -49,18 +49,6 @@ public class TextPositionSequenceTest {
|
||||
assertThat(textPositionSequence.getPageWidth()).isEqualTo(600f);
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
@SneakyThrows
|
||||
public void testDeserializationWithDslJson() {
|
||||
|
||||
TextPositionSequence textPositionSequence = objectSerializer.deserializeWithDslJson(new ByteArrayInputStream(TEXT_POSITION_SEQUENCE_AS_JSON.getBytes(StandardCharsets.UTF_8)),
|
||||
TextPositionSequence.class);
|
||||
|
||||
assertPropertiesAfterJsonDeserialization(textPositionSequence);
|
||||
}
|
||||
|
||||
|
||||
private Matrix createIdentityMatrix() {
|
||||
|
||||
return new Matrix();
|
||||
|
||||
+8
-1
@@ -19,10 +19,13 @@ import org.junit.jupiter.api.extension.ExtendWith;
|
||||
import org.springframework.beans.factory.annotation.Autowired;
|
||||
import org.springframework.boot.autoconfigure.EnableAutoConfiguration;
|
||||
import org.springframework.boot.autoconfigure.amqp.RabbitAutoConfiguration;
|
||||
import org.springframework.boot.test.autoconfigure.actuate.observability.AutoConfigureObservability;
|
||||
import org.springframework.boot.test.context.SpringBootTest;
|
||||
import org.springframework.boot.test.mock.mockito.MockBean;
|
||||
import org.springframework.context.annotation.Bean;
|
||||
import org.springframework.context.annotation.ComponentScan;
|
||||
import org.springframework.context.annotation.Configuration;
|
||||
import org.springframework.context.annotation.FilterType;
|
||||
import org.springframework.context.annotation.Import;
|
||||
import org.springframework.context.annotation.Primary;
|
||||
import org.springframework.core.io.ClassPathResource;
|
||||
@@ -42,6 +45,7 @@ import com.iqser.red.service.redaction.v1.server.client.DictionaryClient;
|
||||
import com.iqser.red.service.redaction.v1.server.client.FileStatusProcessingUpdateClient;
|
||||
import com.iqser.red.service.redaction.v1.server.client.LegalBasisClient;
|
||||
import com.iqser.red.service.redaction.v1.server.client.RulesClient;
|
||||
import com.iqser.red.service.redaction.v1.server.multitenancy.TenantContext;
|
||||
import com.iqser.red.service.redaction.v1.server.queue.RedactionMessageReceiver;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.service.DictionaryService;
|
||||
import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
|
||||
@@ -55,6 +59,7 @@ import lombok.SneakyThrows;
|
||||
@ExtendWith(SpringExtension.class)
|
||||
@SpringBootTest(classes = Application.class, webEnvironment = SpringBootTest.WebEnvironment.RANDOM_PORT)
|
||||
@Import(LiveDataIntegrationTest.RedactionIntegrationTestConfiguration.class)
|
||||
@AutoConfigureObservability
|
||||
public class LiveDataIntegrationTest {
|
||||
|
||||
protected static String BASE_DIR = "performance/";
|
||||
@@ -97,7 +102,8 @@ public class LiveDataIntegrationTest {
|
||||
private List<Type> types;
|
||||
|
||||
@Configuration
|
||||
@EnableAutoConfiguration(exclude = {RabbitAutoConfiguration.class, StorageAutoConfiguration.class})
|
||||
@EnableAutoConfiguration(exclude = {RabbitAutoConfiguration.class})
|
||||
@ComponentScan(excludeFilters={@ComponentScan.Filter(type= FilterType.ASSIGNABLE_TYPE, value=StorageAutoConfiguration.class)})
|
||||
public static class RedactionIntegrationTestConfiguration {
|
||||
|
||||
@Bean
|
||||
@@ -114,6 +120,7 @@ public class LiveDataIntegrationTest {
|
||||
@BeforeEach
|
||||
public void prepareTest() {
|
||||
|
||||
TenantContext.setTenantId("redaction");
|
||||
when(dictionaryClient.getVersion(anyString())).thenReturn(1L);
|
||||
when(dictionaryClient.getVersionForDossier(anyString())).thenReturn(1L);
|
||||
|
||||
|
||||
+411
-15
@@ -4,6 +4,7 @@ import static org.assertj.core.api.Assertions.assertThat;
|
||||
|
||||
import java.io.IOException;
|
||||
import java.util.ArrayList;
|
||||
import java.util.Arrays;
|
||||
import java.util.Collections;
|
||||
import java.util.HashMap;
|
||||
import java.util.List;
|
||||
@@ -21,7 +22,9 @@ import org.springframework.boot.autoconfigure.amqp.RabbitAutoConfiguration;
|
||||
import org.springframework.boot.test.context.SpringBootTest;
|
||||
import org.springframework.boot.test.mock.mockito.MockBean;
|
||||
import org.springframework.context.annotation.Bean;
|
||||
import org.springframework.context.annotation.ComponentScan;
|
||||
import org.springframework.context.annotation.Configuration;
|
||||
import org.springframework.context.annotation.FilterType;
|
||||
import org.springframework.context.annotation.Import;
|
||||
import org.springframework.context.annotation.Primary;
|
||||
import org.springframework.core.io.ClassPathResource;
|
||||
@@ -89,7 +92,8 @@ public class PdfSegmentationServiceTest {
|
||||
private final static String TEST_FILE_ID = "123";
|
||||
|
||||
@Configuration
|
||||
@EnableAutoConfiguration(exclude = {RabbitAutoConfiguration.class, StorageAutoConfiguration.class})
|
||||
@EnableAutoConfiguration(exclude = {RabbitAutoConfiguration.class})
|
||||
@ComponentScan(excludeFilters = {@ComponentScan.Filter(type = FilterType.ASSIGNABLE_TYPE, value = StorageAutoConfiguration.class)})
|
||||
public static class TestConfiguration {
|
||||
|
||||
@Bean
|
||||
@@ -102,6 +106,14 @@ public class PdfSegmentationServiceTest {
|
||||
}
|
||||
|
||||
|
||||
@SneakyThrows
|
||||
private void prepareStorage() {
|
||||
|
||||
storageService.storeObject(TenantContext.getTenantId(),
|
||||
RedactionStorageService.StorageIdUtils.getStorageId(TEST_DOSSIER_ID, TEST_FILE_ID, FileType.TABLES),
|
||||
new ClassPathResource("files/cv_service_empty_response.json").getInputStream());
|
||||
}
|
||||
|
||||
@Test
|
||||
@SneakyThrows
|
||||
public void testMapping() {
|
||||
@@ -133,7 +145,7 @@ public class PdfSegmentationServiceTest {
|
||||
|
||||
Document document = pdfSegmentationService.parseDocument(TEST_DOSSIER_ID, TEST_FILE_ID, pdfFileResource.getInputStream(), null);
|
||||
assertThat(document.getParagraphs().stream().flatMap(paragraph -> paragraph.getTables().stream()).collect(Collectors.toList())).isNotEmpty();
|
||||
Table table = document.getParagraphs().stream().flatMap(paragraph -> paragraph.getTables().stream()).collect(Collectors.toList()).get(0);
|
||||
Table table = document.getParagraphs().stream().flatMap(paragraph -> paragraph.getTables().stream()).toList().get(0);
|
||||
assertThat(table.getColCount()).isEqualTo(6);
|
||||
assertThat(table.getRowCount()).isEqualTo(13);
|
||||
assertThat(table.getRows().stream().mapToInt(List::size).sum()).isEqualTo(6 * 13);
|
||||
@@ -148,14 +160,14 @@ public class PdfSegmentationServiceTest {
|
||||
|
||||
Document document = pdfSegmentationService.parseDocument(TEST_DOSSIER_ID, TEST_FILE_ID, pdfFileResource.getInputStream(), null);
|
||||
assertThat(document.getParagraphs().stream().flatMap(paragraph -> paragraph.getTables().stream()).collect(Collectors.toList())).isNotEmpty();
|
||||
Table firstTable = document.getParagraphs().stream().flatMap(paragraph -> paragraph.getTables().stream()).collect(Collectors.toList()).get(0);
|
||||
Table firstTable = document.getParagraphs().stream().flatMap(paragraph -> paragraph.getTables().stream()).toList().get(0);
|
||||
assertThat(firstTable.getColCount()).isEqualTo(8);
|
||||
assertThat(firstTable.getRowCount()).isEqualTo(1);
|
||||
Table secondTable = document.getParagraphs().stream().flatMap(paragraph -> paragraph.getTables().stream()).collect(Collectors.toList()).get(1);
|
||||
Table secondTable = document.getParagraphs().stream().flatMap(paragraph -> paragraph.getTables().stream()).toList().get(1);
|
||||
assertThat(secondTable.getColCount()).isEqualTo(8);
|
||||
assertThat(secondTable.getRowCount()).isEqualTo(2);
|
||||
List<List<Cell>> firstTableHeaderCells = firstTable.getRows().get(0).stream().map(Collections::singletonList).collect(Collectors.toList());
|
||||
assertThat(secondTable.getRows().stream().allMatch(row -> row.stream().map(Cell::getHeaderCells).collect(Collectors.toList()).equals(firstTableHeaderCells))).isTrue();
|
||||
assertThat(secondTable.getRows().stream().allMatch(row -> row.stream().map(Cell::getHeaderCells).toList().equals(firstTableHeaderCells))).isTrue();
|
||||
}
|
||||
|
||||
|
||||
@@ -167,14 +179,14 @@ public class PdfSegmentationServiceTest {
|
||||
|
||||
Document document = pdfSegmentationService.parseDocument(TEST_DOSSIER_ID, TEST_FILE_ID, pdfFileResource.getInputStream(), null);
|
||||
assertThat(document.getParagraphs().stream().flatMap(paragraph -> paragraph.getTables().stream()).collect(Collectors.toList())).isNotEmpty();
|
||||
Table firstTable = document.getParagraphs().stream().flatMap(paragraph -> paragraph.getTables().stream()).collect(Collectors.toList()).get(0);
|
||||
Table firstTable = document.getParagraphs().stream().flatMap(paragraph -> paragraph.getTables().stream()).toList().get(0);
|
||||
assertThat(firstTable.getColCount()).isEqualTo(9);
|
||||
assertThat(firstTable.getRowCount()).isEqualTo(5);
|
||||
Table secondTable = document.getParagraphs().stream().flatMap(paragraph -> paragraph.getTables().stream()).collect(Collectors.toList()).get(1);
|
||||
Table secondTable = document.getParagraphs().stream().flatMap(paragraph -> paragraph.getTables().stream()).toList().get(1);
|
||||
assertThat(secondTable.getColCount()).isEqualTo(9);
|
||||
assertThat(secondTable.getRowCount()).isEqualTo(6);
|
||||
List<List<Cell>> firstTableHeaderCells = firstTable.getRows().get(firstTable.getRowCount() - 1).stream().map(Cell::getHeaderCells).collect(Collectors.toList());
|
||||
assertThat(secondTable.getRows().stream().allMatch(row -> row.stream().map(Cell::getHeaderCells).collect(Collectors.toList()).equals(firstTableHeaderCells))).isTrue();
|
||||
assertThat(secondTable.getRows().stream().allMatch(row -> row.stream().map(Cell::getHeaderCells).toList().equals(firstTableHeaderCells))).isTrue();
|
||||
}
|
||||
|
||||
|
||||
@@ -186,22 +198,406 @@ public class PdfSegmentationServiceTest {
|
||||
|
||||
Document document = pdfSegmentationService.parseDocument(TEST_DOSSIER_ID, TEST_FILE_ID, pdfFileResource.getInputStream(), null);
|
||||
assertThat(document.getParagraphs().stream().flatMap(paragraph -> paragraph.getTables().stream()).collect(Collectors.toList())).isNotEmpty();
|
||||
Table firstTable = document.getParagraphs().stream().flatMap(paragraph -> paragraph.getTables().stream()).collect(Collectors.toList()).get(0);
|
||||
Table firstTable = document.getParagraphs().stream().flatMap(paragraph -> paragraph.getTables().stream()).toList().get(0);
|
||||
assertThat(firstTable.getColCount()).isEqualTo(8);
|
||||
assertThat(firstTable.getRowCount()).isEqualTo(1);
|
||||
Table secondTable = document.getParagraphs().stream().flatMap(paragraph -> paragraph.getTables().stream()).collect(Collectors.toList()).get(1);
|
||||
Table secondTable = document.getParagraphs().stream().flatMap(paragraph -> paragraph.getTables().stream()).toList().get(1);
|
||||
assertThat(secondTable.getColCount()).isEqualTo(8);
|
||||
assertThat(secondTable.getRowCount()).isEqualTo(6);
|
||||
List<List<Cell>> firstTableHeaderCells = firstTable.getRows().get(0).stream().map(Collections::singletonList).collect(Collectors.toList());
|
||||
assertThat(secondTable.getRows().stream().allMatch(row -> row.stream().map(Cell::getHeaderCells).collect(Collectors.toList()).equals(firstTableHeaderCells))).isTrue();
|
||||
assertThat(secondTable.getRows().stream().allMatch(row -> row.stream().map(Cell::getHeaderCells).toList().equals(firstTableHeaderCells))).isTrue();
|
||||
}
|
||||
|
||||
|
||||
@SneakyThrows
|
||||
private void prepareStorage() {
|
||||
@Test
|
||||
public void testDoc56Page170() throws IOException {
|
||||
|
||||
prepareStorage();
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/56 Fludioxonil_RAR_12_Volume_3CA_B-7_2018-02-21_Page170.pdf");
|
||||
|
||||
Document document = pdfSegmentationService.parseDocument(TEST_DOSSIER_ID, TEST_FILE_ID, pdfFileResource.getInputStream(), null);
|
||||
|
||||
validateTableSize(document, 4);
|
||||
|
||||
validateTable(document, 0, 1, 1, 0, 0);
|
||||
validateTable(document, 1, 2, 2, 0, 0);
|
||||
validateTable(document, 2, 7, 20, 0, 140);
|
||||
validateTable(document, 3, 8, 31, 0, 170);
|
||||
|
||||
storageService.storeObject(TenantContext.getTenantId(), RedactionStorageService.StorageIdUtils.getStorageId(TEST_DOSSIER_ID, TEST_FILE_ID, FileType.TABLES),
|
||||
new ClassPathResource("files/cv_service_empty_response.json").getInputStream());
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
public void testVV931175Page1() throws IOException {
|
||||
|
||||
prepareStorage();
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/VV-931175_Page1.pdf");
|
||||
|
||||
Document document = pdfSegmentationService.parseDocument(TEST_DOSSIER_ID, TEST_FILE_ID, pdfFileResource.getInputStream(), null);
|
||||
|
||||
validateTableSize(document, 1);
|
||||
|
||||
validateTable(document, 0, 8, 9, 0, 2);
|
||||
|
||||
List<List<String>> values = Arrays.asList(
|
||||
Arrays.asList(
|
||||
"Annex point Reference within DAR/RAR",
|
||||
"Author, date",
|
||||
"Study title",
|
||||
"Analytical method Author, date, No.",
|
||||
"Technique, LOQ of the method, validated working range",
|
||||
"Method meets analytical validation criteria",
|
||||
"Remarks (in case validation criteria are not met)",
|
||||
"Acceptability of the method"
|
||||
),
|
||||
Arrays.asList(
|
||||
"",
|
||||
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
|
||||
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
|
||||
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
|
||||
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
|
||||
"",
|
||||
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies",
|
||||
"Part (a) Methods in soil, water, sediment, air and any additional matrices used in support of environmental fate studies"
|
||||
),
|
||||
Arrays.asList(
|
||||
"CA 7.1.2.1.1 DAR (2009)",
|
||||
"Evans P.G. 2001 TMJ4569B, VV-323245",
|
||||
"Azoxystrobin Laboratory Degradation Study in Three Soil Types, Sampled from Holland and the United Kingdom",
|
||||
"Method: RAM 269 Johnson R.I., Tummon O.J., Earl M. 1995 RJ1864B, VV-377731 Johnson R.I., Tummon O.J., Earl M. 1998 RAM 269/02, VV-124072 Johnson R.I., Tummon O.J., Earl M. 2000 RAM 269/03, VV-123986 Validation: Robinson N.J. 2001 TMJ4617B, VV-895845 in a Trial Carried",
|
||||
"LC-MS/MS LOQ: 0.01 mg/kg (R401553 (SYN50165 7), R402173 (SYN501114 )) or 0.02 mg/kg (azoxystrobin, R230310, R234886) Working range: 0.02-1.0 or 0.01-0.5 mg/kg (depending on analyte) Other supporting quantificati on methods: HPLC-UV GC-MSD",
|
||||
"Y",
|
||||
"N/A",
|
||||
"Y"
|
||||
)
|
||||
);
|
||||
|
||||
validateTable(document, 0, values);
|
||||
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
public void testDoc27Page6() throws IOException {
|
||||
|
||||
prepareStorage();
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/27 A8637C - EU AIR3 - MCP Section 1 - Identity of the plant protection product_Page6.pdf");
|
||||
|
||||
Document document = pdfSegmentationService.parseDocument(TEST_DOSSIER_ID, TEST_FILE_ID, pdfFileResource.getInputStream(), null);
|
||||
|
||||
validateTableSize(document, 4);
|
||||
|
||||
validateTable(document, 0, 3, 2, 0, 0);
|
||||
validateTable(document, 1, 3, 2, 0, 0);
|
||||
validateTable(document, 2, 3, 3, 0, 0);
|
||||
validateTable(document, 3, 3, 3, 0, 0);
|
||||
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
public void testDocA20622APartB9Page185() throws IOException {
|
||||
|
||||
prepareStorage();
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/A20622A izRMS (CZ) fRR Part B9_Page185.pdf");
|
||||
|
||||
Document document = pdfSegmentationService.parseDocument(TEST_DOSSIER_ID, TEST_FILE_ID, pdfFileResource.getInputStream(), null);
|
||||
|
||||
validateTableSize(document, 2);
|
||||
|
||||
validateTable(document, 0, 5, 5, 0, 23);
|
||||
validateTable(document, 1, 11, 9, 0, 36);
|
||||
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
public void testDocA20622APartB7Page123() throws IOException {
|
||||
|
||||
prepareStorage();
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/A20622A izZRMS (CZ) fRR Part B7_Page123.pdf");
|
||||
|
||||
Document document = pdfSegmentationService.parseDocument(TEST_DOSSIER_ID, TEST_FILE_ID, pdfFileResource.getInputStream(), null);
|
||||
|
||||
validateTableSize(document, 6);
|
||||
|
||||
validateTable(document, 0, 2, 1, 0, 0);
|
||||
validateTable(document, 1, 2, 1, 0, 0);
|
||||
validateTable(document, 2, 2, 5, 0, 0);
|
||||
validateTable(document, 3, 2, 5, 0, 0);
|
||||
validateTable(document, 4, 2, 4, 0, 0);
|
||||
validateTable(document, 5, 2, 1, 0, 0);
|
||||
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
public void testDoc77Page111() throws IOException {
|
||||
|
||||
prepareStorage();
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/77 Pirimicarb_RAR_08_Volume_3CA_B-6_2017-12-04_Page11.pdf");
|
||||
|
||||
Document document = pdfSegmentationService.parseDocument(TEST_DOSSIER_ID, TEST_FILE_ID, pdfFileResource.getInputStream(), null);
|
||||
|
||||
validateTableSize(document, 3);
|
||||
|
||||
validateTable(document, 0, 7, 9, 0, 0);
|
||||
validateTable(document, 1, 2, 1, 0, 0);
|
||||
validateTable(document, 2, 2, 10, 0, 0);
|
||||
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
public void testDoc95Page532() throws IOException {
|
||||
|
||||
prepareStorage();
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/95 Trinexapac-ethyl_RAR_08_Volume_3CA_B-6_2018-01-10_Page532.pdf");
|
||||
|
||||
Document document = pdfSegmentationService.parseDocument(TEST_DOSSIER_ID, TEST_FILE_ID, pdfFileResource.getInputStream(), null);
|
||||
|
||||
validateTableSize(document, 1);
|
||||
validateTable(document, 0, 9, 9, 0, 0);
|
||||
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
public void testDoc52Page175() throws IOException {
|
||||
|
||||
prepareStorage();
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/52 Fludioxonil_RAR_07_Volume_3CA_B-5_2018-02-21_Page175.pdf");
|
||||
|
||||
Document document = pdfSegmentationService.parseDocument(TEST_DOSSIER_ID, TEST_FILE_ID, pdfFileResource.getInputStream(), null);
|
||||
|
||||
validateTableSize(document, 1);
|
||||
|
||||
validateTable(document, 0, 9, 5, 6, 0);
|
||||
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
public void testDoc52Page174() throws IOException {
|
||||
|
||||
prepareStorage();
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/52 Fludioxonil_RAR_07_Volume_3CA_B-5_2018-02-21_Page174.pdf");
|
||||
|
||||
Document document = pdfSegmentationService.parseDocument(TEST_DOSSIER_ID, TEST_FILE_ID, pdfFileResource.getInputStream(), null);
|
||||
|
||||
validateTableSize(document, 1);
|
||||
validateTable(document, 0, 9, 6, 7, 0);
|
||||
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
public void testDoc19Page35() throws IOException {
|
||||
|
||||
prepareStorage();
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/19 Chlorothalonil RAR 08 Volume 3CA B 6b metabolites Oct 2017_Page35.pdf");
|
||||
|
||||
Document document = pdfSegmentationService.parseDocument(TEST_DOSSIER_ID, TEST_FILE_ID, pdfFileResource.getInputStream(), null);
|
||||
|
||||
validateTableSize(document, 1);
|
||||
validateTable(document, 0, 10, 6, 0, 1);
|
||||
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
public void testDoc19Page161() throws IOException {
|
||||
|
||||
prepareStorage();
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/19 Chlorothalonil RAR 08 Volume 3CA B 6b metabolites Oct 2017_Page161.pdf");
|
||||
|
||||
Document document = pdfSegmentationService.parseDocument(TEST_DOSSIER_ID, TEST_FILE_ID, pdfFileResource.getInputStream(), null);
|
||||
|
||||
validateTableSize(document, 2);
|
||||
validateTable(document, 0, 2, 2, 0, 0);
|
||||
validateTable(document, 1, 1, 1, 0, 0);
|
||||
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
public void testDoc47Page30() throws IOException {
|
||||
|
||||
prepareStorage();
|
||||
ClassPathResource pdfFileResource = new ClassPathResource(
|
||||
"files/SinglePages/47 Cyprodinil - EU AIR3 - MCA Section 5 Supplement - Toxicological and metabolism studies on the active substance_Page30.pdf");
|
||||
|
||||
Document document = pdfSegmentationService.parseDocument(TEST_DOSSIER_ID, TEST_FILE_ID, pdfFileResource.getInputStream(), null);
|
||||
|
||||
validateTableSize(document, 2);
|
||||
|
||||
validateTable(document, 0, 7, 8, 1, 0);
|
||||
validateTable(document, 1, 7, 8, 1, 0);
|
||||
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
public void testDoc49Page61() throws IOException {
|
||||
|
||||
prepareStorage();
|
||||
ClassPathResource pdfFileResource = new ClassPathResource(
|
||||
"files/SinglePages/49 Cyprodinil - EU AIR3 - MCA Section 8 Supplement - Ecotoxicological studies on the active substance_Page61.pdf");
|
||||
|
||||
Document document = pdfSegmentationService.parseDocument(TEST_DOSSIER_ID, TEST_FILE_ID, pdfFileResource.getInputStream(), null);
|
||||
|
||||
validateTableSize(document, 2);
|
||||
|
||||
validateTable(document, 0, 4, 17, 0, 0);
|
||||
validateTable(document, 1, 7, 12, 0, 0);
|
||||
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
public void testDoc81Page54() throws IOException {
|
||||
|
||||
prepareStorage();
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/81 Pirimicarb_RAR_20_Volume_3CP_A10788A (_Pirimor_)_B-9_2017-12-04_Page54.pdf");
|
||||
|
||||
Document document = pdfSegmentationService.parseDocument(TEST_DOSSIER_ID, TEST_FILE_ID, pdfFileResource.getInputStream(), null);
|
||||
|
||||
validateTableSize(document, 2);
|
||||
|
||||
validateTable(document, 0, 5, 14, 4, 0);
|
||||
validateTable(document, 1, 7, 12, 0, 0);
|
||||
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
public void testDoc88Page134() throws IOException {
|
||||
|
||||
prepareStorage();
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/85 Pydiflumetofen_DAR_08_Volume_3CA_B-6_2017-07-26_Page134.pdf");
|
||||
|
||||
Document document = pdfSegmentationService.parseDocument(TEST_DOSSIER_ID, TEST_FILE_ID, pdfFileResource.getInputStream(), null);
|
||||
|
||||
validateTableSize(document, 2);
|
||||
|
||||
validateTable(document, 0, 5, 17, 3, 0);
|
||||
validateTable(document, 1, 5, 16, 2, 0);
|
||||
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
public void testDocThiabendazolePage18() throws IOException {
|
||||
|
||||
prepareStorage();
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/Thiabendazole DAR Addendum for ED_April_2020_Page18.pdf");
|
||||
|
||||
Document document = pdfSegmentationService.parseDocument(TEST_DOSSIER_ID, TEST_FILE_ID, pdfFileResource.getInputStream(), null);
|
||||
|
||||
validateTableSize(document, 4);
|
||||
|
||||
validateTable(document, 0, 4, 4, 0, 0);
|
||||
validateTable(document, 1, 1, 1, 0, 0);
|
||||
validateTable(document, 2, 2, 3, 0, 0);
|
||||
validateTable(document, 3, 1, 1, 0, 0);
|
||||
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testDoc15Page18() throws IOException {
|
||||
|
||||
prepareStorage();
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/15 - Pretilachlor - Acute Oral Toxicity (Up and Down Procedure) - Rat_Page18.pdf");
|
||||
|
||||
Document document = pdfSegmentationService.parseDocument(TEST_DOSSIER_ID, TEST_FILE_ID, pdfFileResource.getInputStream(), null);
|
||||
|
||||
validateTableSize(document, 1);
|
||||
|
||||
validateTable(document, 0, 11, 8, 0, 0);
|
||||
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testDoc28Page23() throws IOException {
|
||||
|
||||
prepareStorage();
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/28 A8637C - EU AIR3 - MCP Section 10 - Ecotoxicological studies on the plant protection product_Page23.pdf");
|
||||
|
||||
Document document = pdfSegmentationService.parseDocument(TEST_DOSSIER_ID, TEST_FILE_ID, pdfFileResource.getInputStream(), null);
|
||||
|
||||
validateTableSize(document, 2);
|
||||
|
||||
validateTable(document, 0, 6, 8, 0, 2);
|
||||
validateTable(document, 1, 6, 8, 0, 1);
|
||||
|
||||
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
public void testDoc24Page17() throws IOException {
|
||||
|
||||
prepareStorage();
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/24 - SYN549522 - Acute Oral Toxicity - Rats_Page17.pdf");
|
||||
|
||||
Document document = pdfSegmentationService.parseDocument(TEST_DOSSIER_ID, TEST_FILE_ID, pdfFileResource.getInputStream(), null);
|
||||
|
||||
validateTableSize(document, 1);
|
||||
|
||||
validateTable(document, 0, 9, 5, 2, 0);
|
||||
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testDoc30Page5() throws IOException {
|
||||
|
||||
prepareStorage();
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/SinglePages/30 - Dicamba - Acute Oral Toxicity - Rats_Page5.pdf");
|
||||
|
||||
Document document = pdfSegmentationService.parseDocument(TEST_DOSSIER_ID, TEST_FILE_ID, pdfFileResource.getInputStream(), null);
|
||||
|
||||
validateTableSize(document, 1);
|
||||
|
||||
validateTable(document, 0, 3, 5, 0, 0);
|
||||
|
||||
}
|
||||
|
||||
|
||||
|
||||
private void validateTable(Document document, int tableIndex, int colCount, int rowCount, int emptyCellsCountCorrect, int emptyCellsCountIncorrect) {
|
||||
|
||||
Table table = document.getParagraphs().stream().flatMap(paragraph -> paragraph.getTables().stream()).toList().get(tableIndex);
|
||||
List<List<Cell>> rows = table.getRows();
|
||||
int emptyCellsFoundFound = rows.stream().flatMap(List::stream).toList().stream().filter(f -> f.toString().equals("")).toList().size();
|
||||
|
||||
assertThat(emptyCellsFoundFound).isEqualTo(emptyCellsCountCorrect + emptyCellsCountIncorrect);
|
||||
|
||||
assertThat(table.getColCount()).isEqualTo(colCount);
|
||||
assertThat(table.getRowCount()).isEqualTo(rowCount);
|
||||
|
||||
}
|
||||
private void validateTable(Document document, int tableIndex, List<List<String>> values) {
|
||||
|
||||
Table table = document.getParagraphs().stream().flatMap(paragraph -> paragraph.getTables().stream()).toList().get(tableIndex);
|
||||
List<List<Cell>> rows = table.getRows();
|
||||
|
||||
List<Cell> rowsFlattened = rows.stream().flatMap(List::stream).toList();
|
||||
List<String> valuesFlattened = values.stream().flatMap(List::stream).toList();
|
||||
|
||||
for (int i = 0; i < valuesFlattened.size(); i++) {
|
||||
Cell cell = rowsFlattened.get(i);
|
||||
String value = valuesFlattened.get(i);
|
||||
assertThat(cell.toString()).isEqualTo(value);
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
private void validateTableSize(Document document, int tableSize) {
|
||||
|
||||
assertThat(document.getParagraphs().stream().flatMap(paragraph -> paragraph.getTables().stream()).toList().size()).isEqualTo(tableSize);
|
||||
|
||||
}
|
||||
|
||||
|
||||
|
||||
}
|
||||
|
||||
+341
@@ -0,0 +1,341 @@
|
||||
package drools
|
||||
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.Section
|
||||
|
||||
global Section section
|
||||
|
||||
|
||||
// --------------------------------------- AI rules -------------------------------------------------------------------
|
||||
|
||||
rule "0: Add CBI_author from ai"
|
||||
when
|
||||
Section(aiMatchesType("CBI_author"))
|
||||
then
|
||||
section.addAiEntities("CBI_author", "CBI_author");
|
||||
end
|
||||
|
||||
rule "0: Combine address parts from ai to CBI_address (org is mandatory)"
|
||||
when
|
||||
Section(aiMatchesType("ORG"))
|
||||
then
|
||||
section.combineAiTypes("ORG", "STREET,POSTAL,COUNTRY,CARDINAL,CITY,STATE", 20, "CBI_address", 3, false);
|
||||
end
|
||||
|
||||
rule "0: Combine address parts from ai to CBI_address (street is mandatory)"
|
||||
when
|
||||
Section(aiMatchesType("STREET"))
|
||||
then
|
||||
section.combineAiTypes("STREET", "ORG,POSTAL,COUNTRY,CARDINAL,CITY,STATE", 20, "CBI_address", 3, false);
|
||||
end
|
||||
|
||||
rule "0: Combine address parts from ai to CBI_address (city is mandatory)"
|
||||
when
|
||||
Section(aiMatchesType("CITY"))
|
||||
then
|
||||
section.combineAiTypes("CITY", "ORG,STREET,POSTAL,COUNTRY,CARDINAL,STATE", 20, "CBI_address", 3, false);
|
||||
end
|
||||
|
||||
/* Syngenta specific laboratory recommendation */
|
||||
rule "0: Recommend CTL/BL laboratory that start with BL or CTL"
|
||||
when
|
||||
Section(searchText.contains("CT") || searchText.contains("BL"))
|
||||
then
|
||||
/* Regular expression: ((\b((([Cc]T(([1ILli\/])| L|~P))|(BL))[\. ]?([\dA-Ziltphz~\/.:!]| ?[\(',][Ppi](\(e)?|([\(-?']\/))+( ?[\(\/\dA-Znasieg]+)?)\b( ?\/? ?\d+)?)|(\bCT[L1i]\b)) */
|
||||
section.addRecommendationByRegEx("((\\b((([Cc]T(([1ILli\\/])| L|~P))|(BL))[\\. ]?([\\dA-Ziltphz~\\/.:!]| ?[\\(',][Ppi](\\(e)?|([\\(-?']\\/))+( ?[\\(\\/\\dA-Znasieg]+)?)\\b( ?\\/? ?\\d+)?)|(\\bCT[L1i]\\b))", true, 0, "CBI_address");
|
||||
end
|
||||
|
||||
|
||||
// --------------------------------------- CBI rules -------------------------------------------------------------------
|
||||
|
||||
rule "1: Redact CBI Authors (Non vertebrate study)"
|
||||
when
|
||||
Section(!fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && matchesType("CBI_author"))
|
||||
then
|
||||
section.redact("CBI_author", 1, "Author found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
|
||||
end
|
||||
|
||||
rule "2: Redact CBI Authors (Vertebrate study)"
|
||||
when
|
||||
Section(fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && matchesType("CBI_author"))
|
||||
then
|
||||
section.redact("CBI_author", 2, "Author found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
|
||||
end
|
||||
|
||||
|
||||
rule "3: Redact not CBI Address (Non vertebrate study)"
|
||||
when
|
||||
Section(!fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && matchesType("CBI_address"))
|
||||
then
|
||||
section.redactNot("CBI_address", 3, "Address found for non vertebrate study");
|
||||
section.ignoreRecommendations("CBI_address");
|
||||
end
|
||||
|
||||
rule "4: Redact CBI Address (Vertebrate study)"
|
||||
when
|
||||
Section(fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && matchesType("CBI_address"))
|
||||
then
|
||||
section.redact("CBI_address", 4, "Address found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
|
||||
end
|
||||
|
||||
|
||||
rule "5: Do not redact genitive CBI_author"
|
||||
when
|
||||
Section(matchesType("CBI_author"))
|
||||
then
|
||||
section.expandToFalsePositiveByRegEx("CBI_author", "['’’'ʼˈ´`‘′ʻ’']s", false, 0);
|
||||
end
|
||||
|
||||
|
||||
rule "6: Redact Author(s) cells in Tables with Author(s) header (Non vertebrate study)"
|
||||
when
|
||||
Section(!fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && hasTableHeader("Author(s)") && !hasTableHeader("Vertebrate study Y/N"))
|
||||
then
|
||||
section.redactCell("Author(s)", 6, "CBI_author", false, "Author found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
|
||||
end
|
||||
|
||||
rule "7: Redact Author(s) cells in Tables with Author(s) header (Vertebrate study)"
|
||||
when
|
||||
Section(fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && hasTableHeader("Author(s)") && !hasTableHeader("Vertebrate study Y/N"))
|
||||
then
|
||||
section.redactCell("Author(s)", 7, "CBI_author", false, "Author found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
|
||||
end
|
||||
|
||||
|
||||
rule "8: Redact Author cells in Tables with Author header (Non vertebrate study)"
|
||||
when
|
||||
Section(!fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && hasTableHeader("Author") && !hasTableHeader("Vertebrate study Y/N"))
|
||||
then
|
||||
section.redactCell("Author", 8, "CBI_author", false, "Author found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
|
||||
end
|
||||
|
||||
rule "9: Redact Author cells in Tables with Author header (Vertebrate study)"
|
||||
when
|
||||
Section(fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && hasTableHeader("Author") && !hasTableHeader("Vertebrate study Y/N"))
|
||||
then
|
||||
section.redactCell("Author", 9, "CBI_author", false, "Author found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
|
||||
end
|
||||
|
||||
|
||||
rule "10: Redact and recommand Authors in Tables with Vertebrate study Y/N header (Non vertebrate study)"
|
||||
when
|
||||
Section(!fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && (rowEquals("Vertebrate study Y/N", "Y") || rowEquals("Vertebrate study Y/N", "Yes") || rowEquals("Vertebrate study Y/N", "N") || rowEquals("Vertebrate study Y/N", "No")))
|
||||
then
|
||||
section.redactCell("Author(s)", 10, "CBI_author", true, "Author found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
|
||||
end
|
||||
|
||||
rule "11: Redact and recommand Authors in Tables with Vertebrate study Y/N header (Vertebrate study)"
|
||||
when
|
||||
Section(fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && (rowEquals("Vertebrate study Y/N", "Y") || rowEquals("Vertebrate study Y/N", "Yes") || rowEquals("Vertebrate study Y/N", "N") || rowEquals("Vertebrate study Y/N", "No")))
|
||||
then
|
||||
section.redactCell("Author(s)", 11, "CBI_author", true, "Author found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
|
||||
end
|
||||
|
||||
rule "14: Redact and add recommendation for et al. author (Non vertebrate study)"
|
||||
when
|
||||
Section(!fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && searchText.contains("et al"))
|
||||
then
|
||||
section.redactAndRecommendByRegEx("\\b([A-ZÄÖÜ][^\\s\\.,]+( [A-ZÄÖÜ]{1,2}\\.?)?( ?[A-ZÄÖÜ]\\.?)?) et al\\.?", false, 1, "CBI_author", 14, "Author found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
|
||||
end
|
||||
|
||||
rule "15: Redact and add recommendation for et al. author (Vertebrate study)"
|
||||
when
|
||||
Section(fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && searchText.contains("et al"))
|
||||
then
|
||||
section.redactAndRecommendByRegEx("\\b([A-ZÄÖÜ][^\\s\\.,]+( [A-ZÄÖÜ]{1,2}\\.?)?( ?[A-ZÄÖÜ]\\.?)?) et al\\.?", false, 1, "CBI_author", 15, "Author found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
|
||||
end
|
||||
|
||||
|
||||
rule "16: Add recommendation for Addresses in Test Organism sections"
|
||||
when
|
||||
Section(fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && searchText.contains("Species:") && searchText.contains("Source:"))
|
||||
then
|
||||
section.recommendLineAfter("Source:", "CBI_address");
|
||||
end
|
||||
|
||||
rule "17: Add recommendation for Addresses in Test Animals sections"
|
||||
when
|
||||
Section(fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && searchText.contains("Species") && searchText.contains("Source"))
|
||||
then
|
||||
section.recommendLineAfter("Source", "CBI_address");
|
||||
end
|
||||
|
||||
|
||||
rule "18: Do not redact Names and Addresses if Published Information found"
|
||||
when
|
||||
Section(matchesType("published_information"))
|
||||
then
|
||||
section.redactNotAndReference("CBI_author","published_information", 18, "Published Information found");
|
||||
section.redactNotAndReference("CBI_address","published_information", 18, "Published Information found");
|
||||
end
|
||||
|
||||
|
||||
// --------------------------------------- PII rules -------------------------------------------------------------------
|
||||
|
||||
|
||||
rule "19: Redacted PII Personal Identification Information (Non vertebrate study)"
|
||||
when
|
||||
Section(!fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && matchesType("PII"))
|
||||
then
|
||||
section.redact("PII", 19, "Personal information found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
|
||||
end
|
||||
|
||||
rule "20: Redacted PII Personal Identification Information (Vertebrate study)"
|
||||
when
|
||||
Section(fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && matchesType("PII"))
|
||||
then
|
||||
section.redact("PII", 20, "Personal information found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
|
||||
end
|
||||
|
||||
|
||||
rule "21: Redact Emails by RegEx (Non vertebrate study)"
|
||||
when
|
||||
Section(!fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && searchText.contains("@"))
|
||||
then
|
||||
section.redactByRegEx("\\b([A-Za-z0-9._%+\\-]+@[A-Za-z0-9.\\-]+\\.[A-Za-z\\-]{1,23}[A-Za-z])\\b", true, 1, "PII", 21, "Personal information found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
|
||||
end
|
||||
|
||||
rule "22: Redact Emails by RegEx (Vertebrate study)"
|
||||
when
|
||||
Section(fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && searchText.contains("@"))
|
||||
then
|
||||
section.redactByRegEx("\\b([A-Za-z0-9._%+\\-]+@[A-Za-z0-9.\\-]+\\.[A-Za-z\\-]{1,23}[A-Za-z])\\b", true, 1, "PII", 22, "Personal information found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
|
||||
end
|
||||
|
||||
|
||||
rule "25: Redact Phone and Fax by RegEx (Non vertebrate study)"
|
||||
when
|
||||
Section(!fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && (
|
||||
text.contains("Contact")
|
||||
|| text.contains("Telephone")
|
||||
|| text.contains("Phone")
|
||||
|| text.contains("Fax")
|
||||
|| text.contains("Tel")
|
||||
|| text.contains("Ter")
|
||||
|| text.contains("Mobile")
|
||||
|| text.contains("Fel")
|
||||
|| text.contains("Fer")
|
||||
))
|
||||
then
|
||||
section.redactByRegEx("\\b(contact|telephone|phone|fax|tel|ter|mobile|fel|fer)[a-zA-Z\\s]{0,10}[:.\\s]{0,3}([\\+\\d\\(][\\s\\d\\(\\)\\-\\/\\.]{4,100}\\d)\\b", true, 2, "PII", 25, "Personal information found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
|
||||
end
|
||||
|
||||
rule "26: Redact Phone and Fax by RegEx (Vertebrate study)"
|
||||
when
|
||||
Section(fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && (
|
||||
text.contains("Contact")
|
||||
|| text.contains("Telephone")
|
||||
|| text.contains("Phone")
|
||||
|| text.contains("Fax")
|
||||
|| text.contains("Tel")
|
||||
|| text.contains("Ter")
|
||||
|| text.contains("Mobile")
|
||||
|| text.contains("Fel")
|
||||
|| text.contains("Fer")
|
||||
))
|
||||
then
|
||||
section.redactByRegEx("\\b(contact|telephone|phone|fax|tel|ter|mobile|fel|fer)[a-zA-Z\\s]{0,10}[:.\\s]{0,3}([\\+\\d\\(][\\s\\d\\(\\)\\-\\/\\.]{4,100}\\d)\\b", true, 2, "PII", 26, "Personal information found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
|
||||
end
|
||||
|
||||
|
||||
rule "27: Redact AUTHOR(S) (Non vertebrate study)"
|
||||
when
|
||||
Section(!fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes")
|
||||
&& searchText.contains("AUTHOR(S):")
|
||||
&& searchText.contains("COMPLETION DATE:")
|
||||
&& !searchText.contains("STUDY COMPLETION DATE:")
|
||||
)
|
||||
then
|
||||
section.redactLinesBetween("AUTHOR(S):", "COMPLETION DATE:", "PII", 27, true, "Author found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
|
||||
end
|
||||
|
||||
rule "28: Redact AUTHOR(S) (Vertebrate study)"
|
||||
when
|
||||
Section(fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes")
|
||||
&& searchText.contains("AUTHOR(S):")
|
||||
&& searchText.contains("COMPLETION DATE:")
|
||||
&& !searchText.contains("STUDY COMPLETION DATE:")
|
||||
)
|
||||
then
|
||||
section.redactLinesBetween("AUTHOR(S):", "COMPLETION DATE:", "PII", 28, true, "AUTHOR(S) was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
|
||||
end
|
||||
|
||||
|
||||
rule "29: Redact AUTHOR(S) (Non vertebrate study)"
|
||||
when
|
||||
Section(!fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes")
|
||||
&& searchText.contains("AUTHOR(S):")
|
||||
&& searchText.contains("STUDY COMPLETION DATE:")
|
||||
)
|
||||
then
|
||||
section.redactLinesBetween("AUTHOR(S):", "STUDY COMPLETION DATE:", "PII", 29, true, "AUTHOR(S) was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
|
||||
end
|
||||
|
||||
rule "30: Redact AUTHOR(S) (Vertebrate study)"
|
||||
when
|
||||
Section(fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes")
|
||||
&& searchText.contains("AUTHOR(S):")
|
||||
&& searchText.contains("STUDY COMPLETION DATE:")
|
||||
)
|
||||
then
|
||||
section.redactLinesBetween("AUTHOR(S):", "STUDY COMPLETION DATE:", "PII", 30, true, "AUTHOR(S) was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
|
||||
end
|
||||
|
||||
|
||||
rule "31: Redact PERFORMING LABORATORY (Non vertebrate study)"
|
||||
when
|
||||
Section(!fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes")
|
||||
&& searchText.contains("PERFORMING LABORATORY:")
|
||||
)
|
||||
then
|
||||
section.redactBetween("PERFORMING LABORATORY:", "LABORATORY PROJECT ID:", "CBI_address", 31, true, "PERFORMING LABORATORY was found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
|
||||
section.redactNot("CBI_address", 31, "Performing laboratory found for non vertebrate study");
|
||||
end
|
||||
|
||||
rule "32: Redact PERFORMING LABORATORY (Vertebrate study)"
|
||||
when
|
||||
Section(fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes")
|
||||
&& searchText.contains("PERFORMING LABORATORY:"))
|
||||
then
|
||||
section.redactBetween("PERFORMING LABORATORY:", "LABORATORY PROJECT ID:", "CBI_address", 32, true, "PERFORMING LABORATORY was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
|
||||
end
|
||||
|
||||
|
||||
// --------------------------------------- other rules -------------------------------------------------------------------
|
||||
|
||||
rule "33: Purity Hint"
|
||||
when
|
||||
Section(searchText.toLowerCase().contains("purity"))
|
||||
then
|
||||
section.addHintAnnotationByRegEx("(purity ?( of|\\(.{1,20}\\))?( ?:)?) .{0,5}[\\d\\.]+( .{0,4}\\.)? ?%", true, 1, "hint_only");
|
||||
end
|
||||
|
||||
|
||||
rule "34: Ignore dossier_redaction entries if confidentiality is not 'confidential'"
|
||||
when
|
||||
Section(!fileAttributeByLabelEqualsIgnoreCase("Confidentiality","confidential") && matchesType("dossier_redaction"));
|
||||
then
|
||||
section.ignore("dossier_redaction");
|
||||
end
|
||||
|
||||
|
||||
rule "35: Redact signatures (Non vertebrate study)"
|
||||
when
|
||||
Section(!fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && matchesImageType("signature"))
|
||||
then
|
||||
section.redactImage("signature", 35, "Signature found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
|
||||
end
|
||||
|
||||
rule "36: Redact signatures (Vertebrate study)"
|
||||
when
|
||||
Section(fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && matchesImageType("signature"))
|
||||
then
|
||||
section.redactImage("signature", 36, "Signature found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
|
||||
end
|
||||
|
||||
|
||||
rule "43: Redact Logos (Vertebrate study)"
|
||||
when
|
||||
Section(fileAttributeByLabelEqualsIgnoreCase("Vertebrate Study","Yes") && matchesImageType("logo"))
|
||||
then
|
||||
section.redactImage("logo", 43, "Logo found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
|
||||
end
|
||||
BIN
Binary file not shown.
BIN
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BIN
Binary file not shown.
BIN
Binary file not shown.
BIN
Binary file not shown.
BIN
Binary file not shown.
BIN
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+1099
File diff suppressed because one or more lines are too long
+1414
File diff suppressed because one or more lines are too long
+371
File diff suppressed because one or more lines are too long
+355
File diff suppressed because one or more lines are too long
+952
File diff suppressed because one or more lines are too long
+673
File diff suppressed because one or more lines are too long
+1013
File diff suppressed because one or more lines are too long
+694
File diff suppressed because one or more lines are too long
+962
File diff suppressed because one or more lines are too long
BIN
Binary file not shown.
BIN
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BIN
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BIN
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BIN
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Reference in New Issue
Block a user