Compare commits

..
Author SHA1 Message Date
deiflaender 4c9cb10a61 RED-4064: Fixed find dictionary entries at position where rules entries are resized to smaller entries 2022-06-02 10:32:48 +02:00
Philipp Schramm 50b2908763 Pull request #395: RED-3816: Bugfix with adding images to sections
Merge in RED/redaction-service from bugfix/RED-3816 to master

* commit 'c1192ceefd0717958badc27d2c2a65a8059952a4':
  RED-3816: Bugfix with adding images to sections
2022-05-30 14:43:35 +02:00
Philipp Schramm c1192ceefd RED-3816: Bugfix with adding images to sections 2022-05-30 13:52:57 +02:00
Timo Bejan 77584c9a5a Pull request #394: RED-3800 String Performance matching test
Merge in RED/redaction-service from RED-3800-string-performance-test to master

* commit '21d717f0837c9cc9b2f5b251d372db88b25a7b6d':
  RED-3800 String Performance matching test
  RED-3800 String Performance matching test
2022-05-24 11:09:08 +02:00
Philipp Schramm f608d991a3 Pull request #393: RED-3816: Implemented ThenAction to redact section with rectangle
Merge in RED/redaction-service from RED-3816 to master

* commit 'eb7137315208dadf3a679e21b05ec16d53c4ec43':
  RED-3816: Implemented ThenAction to redact section with rectangle
2022-05-24 09:00:07 +02:00
Ali Oezyetimoglu e914b09d1e Pull request #392: RED-3674: Fixed force redactions overrides idRemoval with different id
Merge in RED/redaction-service from RED-3674-rs1 to master

* commit '87d64b6d1285eaf7cd5ee3c2fb899f92063bc70f':
  RED-3674: Fixed force redactions overrides idRemoval with different id
2022-05-23 18:48:10 +02:00
aoezyetimoglu 87d64b6d12 RED-3674: Fixed force redactions overrides idRemoval with different id 2022-05-23 17:38:23 +02:00
Philipp Schramm eb71373152 Merge branch 'master' into RED-3816 2022-05-23 16:27:12 +02:00
Philipp Schramm a65e23e45d RED-3816: Implemented ThenAction to redact section with rectangle 2022-05-23 16:26:47 +02:00
Dominique Eiflaender 4aaef260d7 Pull request #390: RED-4075: Add legalBasis if Rule Entity overrides Ai Recommendation
Merge in RED/redaction-service from RED-4075 to master

* commit 'c669f9a09a3e5e254d41715f65fef3b158873338':
  RED-4075: Add legalBasis if Rule Entity overrides Ai Recommendation
2022-05-23 14:05:38 +02:00
deiflaender c669f9a09a RED-4075: Add legalBasis if Rule Entity overrides Ai Recommendation 2022-05-23 13:54:27 +02:00
deiflaender b1bad03090 RED-4014: Changed metrics config 2022-05-12 16:08:54 +02:00
deiflaender 0a0d9fe31a RED-4014: Added names to @Timed annotations 2022-05-12 15:56:03 +02:00
deiflaender fd37e3deab RED-4014: Added @Timed annotations to AnaylseService 2022-05-12 15:10:35 +02:00
Dominique Eiflaender 7fb04cfa48 Pull request #389: RED-4010: Fixed problem with strange unicode in json d835
Merge in RED/redaction-service from RED-4010 to master

* commit '0f5f7974cc46e36d39d514ad03b5adcf062c9526':
  RED-4010: Fixed problem with strange unicode in json d835
2022-05-11 14:41:07 +02:00
deiflaender 0f5f7974cc RED-4010: Fixed problem with strange unicode in json d835 2022-05-11 14:38:06 +02:00
Dominique Eiflaender 0601ec4862 Pull request #388: RED-4009: Fixed NPE if comments are null in RedactionLogMergeService
Merge in RED/redaction-service from RED-4009 to master

* commit 'd2807e0ff1ef288c7456383974a8607a8fca4821':
  RED-4009: Fixed NPE if comments are null in RedactionLogMergeService
2022-05-10 13:24:23 +02:00
deiflaender d2807e0ff1 RED-4009: Fixed NPE if comments are null in RedactionLogMergeService 2022-05-10 13:20:57 +02:00
Timo Bejan e49bbfca88 Pull request #387: RED-3800 switched jackson for dsl-json for internal non-rest related operations
Merge in RED/redaction-service from RED-3800-dsljson to master

* commit '7967453c676094efdc438eea1cca2b9e00856c0d':
  RED-3800 api cleanup
  RED-3800 api cleanup
  RED-3800 switched jackson for dsl-json for internal non-rest related operations
2022-05-09 21:14:04 +02:00
Timo Bejan 78de7371a0 Pull request #385: RED-3946 - quotation-mark fix
Merge in RED/redaction-service from RED-3946-qf to master

* commit 'df2fcd2e5e48298131ebf7a00bf2ed80a9fc2d96':
  RED-3946 - quotation-mark fix
2022-05-09 14:47:03 +02:00
Dominique Eiflaender 924f791e4d Pull request #386: RED-3959: Do not remove entities on larger false_recommendactions
Merge in RED/redaction-service from RED-3959 to master

* commit '542bbb294a27bf2eb2832a144d239b820bbc0b5f':
  RED-3959: Do not remove entities on larger false_recommendactions
2022-05-09 12:34:13 +02:00
deiflaender 542bbb294a RED-3959: Do not remove entities on larger false_recommendactions 2022-05-09 12:27:36 +02:00
Timo Bejan 8e819a0d26 Pull request #384: RED-3992
Merge in RED/redaction-service from RED-3992 to master

* commit '01e7115d301d8706962390b76af0769eab67c1fe':
  RED-3992 - Fixed PMD
  RED-3992 - Replaced naive approach with aho corassick string search. Cleaned up code. reduced ammount of unnecesary conversions/invocations
  RED-3992 - Replaced naive approach with aho corassick string search. Cleaned up code. reduced ammount of unnecesary conversions/invocations
  RED-3800 Exception handling for processed files
2022-05-09 10:05:50 +02:00
23 changed files with 866 additions and 188 deletions
@@ -21,6 +21,12 @@
</properties>
<dependencies>
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-aop</artifactId>
</dependency>
<dependency>
<groupId>com.iqser.red.commons</groupId>
<artifactId>storage-commons</artifactId>
@@ -9,8 +9,12 @@ import org.springframework.boot.autoconfigure.SpringBootApplication;
import org.springframework.boot.autoconfigure.security.servlet.SecurityAutoConfiguration;
import org.springframework.boot.context.properties.EnableConfigurationProperties;
import org.springframework.cloud.openfeign.EnableFeignClients;
import org.springframework.context.annotation.Bean;
import org.springframework.context.annotation.Import;
import io.micrometer.core.aop.TimedAspect;
import io.micrometer.core.instrument.MeterRegistry;
@Import({DefaultWebMvcConfiguration.class})
@EnableFeignClients(basePackageClasses = RulesClient.class)
@EnableConfigurationProperties(RedactionServiceSettings.class)
@@ -22,5 +26,10 @@ public class Application {
SpringApplication.run(Application.class, args);
}
@Bean
public TimedAspect timedAspect(MeterRegistry registry) {
return new TimedAspect(registry);
}
}
@@ -1,16 +1,22 @@
package com.iqser.red.service.redaction.v1.server.parsing.model;
import org.apache.pdfbox.text.TextPosition;
import org.springframework.beans.BeanUtils;
import com.dslplatform.json.CompiledJson;
import com.dslplatform.json.JsonAttribute;
import com.fasterxml.jackson.annotation.JsonIgnore;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
import lombok.SneakyThrows;
import org.apache.pdfbox.text.TextPosition;
import org.springframework.beans.BeanUtils;
@Data
@Builder
@NoArgsConstructor
@AllArgsConstructor
@CompiledJson
public class RedTextPosition {
@@ -1,24 +1,30 @@
package com.iqser.red.service.redaction.v1.server.parsing.model;
import java.util.ArrayList;
import java.util.List;
import java.util.stream.Collectors;
import org.apache.pdfbox.text.TextPosition;
import com.dslplatform.json.CompiledJson;
import com.dslplatform.json.JsonAttribute;
import com.fasterxml.jackson.annotation.JsonIgnore;
import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
import com.iqser.red.service.redaction.v1.model.Point;
import com.iqser.red.service.redaction.v1.model.Rectangle;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
import lombok.extern.slf4j.Slf4j;
import org.apache.pdfbox.text.TextPosition;
import java.util.ArrayList;
import java.util.List;
import java.util.stream.Collectors;
@Slf4j
@Data
@Builder
@CompiledJson
@NoArgsConstructor
@AllArgsConstructor
@JsonIgnoreProperties({"empty"})
public class TextPositionSequence implements CharSequence {
@@ -1,17 +1,23 @@
package com.iqser.red.service.redaction.v1.server.redaction.model;
import com.iqser.red.service.redaction.v1.model.Engine;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import lombok.Data;
import lombok.EqualsAndHashCode;
import java.util.ArrayList;
import java.util.HashSet;
import java.util.List;
import java.util.Set;
import com.iqser.red.service.redaction.v1.model.Engine;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.EqualsAndHashCode;
import lombok.NoArgsConstructor;
@Data
@Builder
@NoArgsConstructor
@AllArgsConstructor
@EqualsAndHashCode(onlyExplicitlyIncluded = true)
public class Entity implements ReasonHolder {
@@ -1,15 +1,18 @@
package com.iqser.red.service.redaction.v1.server.redaction.model;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import lombok.AllArgsConstructor;
import lombok.Data;
import lombok.EqualsAndHashCode;
import lombok.RequiredArgsConstructor;
import java.util.ArrayList;
import java.util.List;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.EqualsAndHashCode;
import lombok.RequiredArgsConstructor;
@Data
@Builder
@RequiredArgsConstructor
@AllArgsConstructor
@EqualsAndHashCode
@@ -1,14 +1,16 @@
package com.iqser.red.service.redaction.v1.server.redaction.model;
import com.dslplatform.json.CompiledJson;
import com.dslplatform.json.JsonAttribute;
import com.fasterxml.jackson.annotation.JsonIgnore;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@Builder
@CompiledJson
@NoArgsConstructor
@AllArgsConstructor
@@ -1,28 +1,38 @@
package com.iqser.red.service.redaction.v1.server.redaction.model;
import com.iqser.red.service.redaction.v1.model.ArgumentType;
import com.iqser.red.service.redaction.v1.model.Engine;
import com.iqser.red.service.redaction.v1.model.FileAttribute;
import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
import com.iqser.red.service.redaction.v1.server.redaction.utils.EntitySearchUtils;
import com.iqser.red.service.redaction.v1.server.redaction.utils.FindEntityDetails;
import com.iqser.red.service.redaction.v1.server.redaction.utils.Patterns;
import com.iqser.red.service.redaction.v1.server.redaction.utils.SearchImplementation;
import lombok.Builder;
import lombok.Data;
import lombok.extern.slf4j.Slf4j;
import org.apache.commons.lang3.StringUtils;
import java.lang.annotation.ElementType;
import java.lang.annotation.Retention;
import java.lang.annotation.RetentionPolicy;
import java.lang.annotation.Target;
import java.util.*;
import java.util.ArrayList;
import java.util.Collection;
import java.util.Comparator;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.regex.Matcher;
import java.util.regex.Pattern;
import java.util.stream.Collectors;
import org.apache.commons.lang3.StringUtils;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactions;
import com.iqser.red.service.redaction.v1.model.ArgumentType;
import com.iqser.red.service.redaction.v1.model.Engine;
import com.iqser.red.service.redaction.v1.model.FileAttribute;
import com.iqser.red.service.redaction.v1.model.SectionArea;
import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
import com.iqser.red.service.redaction.v1.server.redaction.utils.EntitySearchUtils;
import com.iqser.red.service.redaction.v1.server.redaction.utils.FindEntityDetails;
import com.iqser.red.service.redaction.v1.server.redaction.utils.Patterns;
import com.iqser.red.service.redaction.v1.server.redaction.utils.SearchImplementation;
import lombok.Builder;
import lombok.Data;
import lombok.extern.slf4j.Slf4j;
@Data
@Slf4j
@Builder
@@ -61,12 +71,19 @@ public class Section {
@Builder.Default
private List<FileAttribute> fileAttributes = new ArrayList<>();
@Builder.Default
private List<SectionArea> sectionAreas = new ArrayList<>();
private ManualRedactions manualRedactions;
@SuppressWarnings("unused")
@WhenCondition
public void addAiEntities(@Argument(ArgumentType.TYPE) String type, @Argument(ArgumentType.TYPE) String asType) {
Set<Entity> entitiesOfType = nerEntities.stream().filter(nerEntity -> nerEntity.getType().equals(type)).collect(Collectors.toSet());
Set<Entity> entitiesOfType = nerEntities.stream()
.filter(nerEntity -> nerEntity.getType().equals(type))
.collect(Collectors.toSet());
List<String> values = entitiesOfType.stream().map(Entity::getWord).collect(Collectors.toList());
Set<Entity> found = EntitySearchUtils.findEntities(searchText, new SearchImplementation(values, dictionary.isCaseInsensitiveDictionary(asType)), dictionary.getType(asType), new FindEntityDetails(asType, headline, sectionNumber, false, false, Engine.NER, EntityType.RECOMMENDATION));
EntitySearchUtils.clearAndFindPositions(found, searchableText, dictionary);
@@ -93,15 +110,21 @@ public class Section {
nerEntities.removeAll(entitiesOfType);
}
@SuppressWarnings("unused")
@WhenCondition
public void combineAiTypes(@Argument(ArgumentType.TYPE) String startType, @Argument(ArgumentType.TYPE) String combineTypes,
@Argument(ArgumentType.INTEGER) int maxDistanceBetween, @Argument(ArgumentType.TYPE) String asType,
@Argument(ArgumentType.INTEGER) int minPartMatches, @Argument(ArgumentType.BOOLEAN) boolean allowDuplicateTypes) {
public void combineAiTypes(@Argument(ArgumentType.TYPE) String startType,
@Argument(ArgumentType.TYPE) String combineTypes,
@Argument(ArgumentType.INTEGER) int maxDistanceBetween,
@Argument(ArgumentType.TYPE) String asType,
@Argument(ArgumentType.INTEGER) int minPartMatches,
@Argument(ArgumentType.BOOLEAN) boolean allowDuplicateTypes) {
Set<String> combineSet = Set.of(combineTypes.split(","));
List<Entity> sorted = nerEntities.stream().sorted(Comparator.comparing(Entity::getStart)).collect(Collectors.toList());
List<Entity> sorted = nerEntities.stream()
.sorted(Comparator.comparing(Entity::getStart))
.collect(Collectors.toList());
Set<Entity> found = new HashSet<>();
int start = -1;
int lastEnd = -1;
@@ -158,49 +181,67 @@ public class Section {
}
}
@SuppressWarnings("unused")
@WhenCondition
public boolean fileAttributeByIdEquals(@Argument(ArgumentType.FILE_ATTRIBUTE) String id, @Argument(ArgumentType.STRING) String value) {
public boolean fileAttributeByIdEquals(@Argument(ArgumentType.FILE_ATTRIBUTE) String id,
@Argument(ArgumentType.STRING) String value) {
return fileAttributes != null && fileAttributes.stream().anyMatch(attribute -> id.equals(attribute.getId()) && value.equals(attribute.getValue()));
return fileAttributes != null && fileAttributes.stream()
.anyMatch(attribute -> id.equals(attribute.getId()) && value.equals(attribute.getValue()));
}
@SuppressWarnings("unused")
@WhenCondition
public boolean fileAttributeByPlaceholderEquals(@Argument(ArgumentType.FILE_ATTRIBUTE) String placeholder, @Argument(ArgumentType.STRING) String value) {
public boolean fileAttributeByPlaceholderEquals(@Argument(ArgumentType.FILE_ATTRIBUTE) String placeholder,
@Argument(ArgumentType.STRING) String value) {
return fileAttributes != null && fileAttributes.stream().anyMatch(attribute -> placeholder.equals(attribute.getPlaceholder()) && value.equals(attribute.getValue()));
return fileAttributes != null && fileAttributes.stream()
.anyMatch(attribute -> placeholder.equals(attribute.getPlaceholder()) && value.equals(attribute.getValue()));
}
@SuppressWarnings("unused")
@WhenCondition
public boolean fileAttributeByLabelEquals(@Argument(ArgumentType.FILE_ATTRIBUTE) String label, @Argument(ArgumentType.STRING) String value) {
public boolean fileAttributeByLabelEquals(@Argument(ArgumentType.FILE_ATTRIBUTE) String label,
@Argument(ArgumentType.STRING) String value) {
return fileAttributes != null && fileAttributes.stream().anyMatch(attribute -> label.equals(attribute.getLabel()) && value.equals(attribute.getValue()));
return fileAttributes != null && fileAttributes.stream()
.anyMatch(attribute -> label.equals(attribute.getLabel()) && value.equals(attribute.getValue()));
}
@SuppressWarnings("unused")
@WhenCondition
public boolean fileAttributeByIdEqualsIgnoreCase(@Argument(ArgumentType.FILE_ATTRIBUTE) String id, @Argument(ArgumentType.STRING) String value) {
public boolean fileAttributeByIdEqualsIgnoreCase(@Argument(ArgumentType.FILE_ATTRIBUTE) String id,
@Argument(ArgumentType.STRING) String value) {
return fileAttributes != null && fileAttributes.stream().anyMatch(attribute -> id.equals(attribute.getId()) && value.equalsIgnoreCase(attribute.getValue()));
return fileAttributes != null && fileAttributes.stream()
.anyMatch(attribute -> id.equals(attribute.getId()) && value.equalsIgnoreCase(attribute.getValue()));
}
@SuppressWarnings("unused")
@WhenCondition
public boolean fileAttributeByPlaceholderEqualsIgnoreCase(@Argument(ArgumentType.FILE_ATTRIBUTE) String placeholder, @Argument(ArgumentType.STRING) String value) {
public boolean fileAttributeByPlaceholderEqualsIgnoreCase(@Argument(ArgumentType.FILE_ATTRIBUTE) String placeholder,
@Argument(ArgumentType.STRING) String value) {
return fileAttributes != null && fileAttributes.stream()
.anyMatch(attribute -> placeholder.equals(attribute.getPlaceholder()) && value.equalsIgnoreCase(attribute.getValue()));
}
@SuppressWarnings("unused")
@WhenCondition
public boolean fileAttributeByLabelEqualsIgnoreCase(@Argument(ArgumentType.FILE_ATTRIBUTE) String label, @Argument(ArgumentType.STRING) String value) {
public boolean fileAttributeByLabelEqualsIgnoreCase(@Argument(ArgumentType.FILE_ATTRIBUTE) String label,
@Argument(ArgumentType.STRING) String value) {
return fileAttributes != null && fileAttributes.stream().anyMatch(attribute -> label.equals(attribute.getLabel()) && value.equalsIgnoreCase(attribute.getValue()));
return fileAttributes != null && fileAttributes.stream()
.anyMatch(attribute -> label.equals(attribute.getLabel()) && value.equalsIgnoreCase(attribute.getValue()));
}
@SuppressWarnings("unused")
@WhenCondition
public boolean hasTableHeader(@Argument(ArgumentType.STRING) String headerName) {
@@ -209,6 +250,7 @@ public class Section {
return tabularData != null && tabularData.containsKey(cleanHeaderName);
}
@SuppressWarnings("unused")
@WhenCondition
public boolean aiMatchesType(@Argument(ArgumentType.TYPE) String type) {
@@ -216,6 +258,7 @@ public class Section {
return nerEntities.stream().anyMatch(entity -> !entity.isIgnored() && entity.getType().equals(type));
}
@SuppressWarnings("unused")
@WhenCondition
public boolean matchesType(@Argument(ArgumentType.TYPE) String type) {
@@ -223,6 +266,7 @@ public class Section {
return entities.stream().anyMatch(entity -> !entity.isIgnored() && entity.getType().equals(type));
}
@SuppressWarnings("unused")
@WhenCondition
public boolean matchesImageType(@Argument(ArgumentType.TYPE) String type) {
@@ -230,6 +274,7 @@ public class Section {
return images.stream().anyMatch(image -> !image.isIgnored() && image.getType().equals(type));
}
@SuppressWarnings("unused")
@WhenCondition
public boolean headlineContainsWord(@Argument(ArgumentType.STRING) String word) {
@@ -237,9 +282,11 @@ public class Section {
return StringUtils.containsIgnoreCase(headline, word);
}
@SuppressWarnings("unused")
@WhenCondition
public boolean containsRegEx(@Argument(ArgumentType.STRING) String regEx, @Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive) {
public boolean containsRegEx(@Argument(ArgumentType.STRING) String regEx,
@Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive) {
var compiledPattern = Patterns.getCompiledPattern(regEx, patternCaseInsensitive);
@@ -248,19 +295,26 @@ public class Section {
return matcher.find();
}
@SuppressWarnings("unused")
@WhenCondition
public boolean rowEquals(@Argument(ArgumentType.STRING) String headerName, @Argument(ArgumentType.STRING) String value) {
public boolean rowEquals(@Argument(ArgumentType.STRING) String headerName,
@Argument(ArgumentType.STRING) String value) {
String cleanHeaderName = headerName.replaceAll("\n", "").replaceAll(" ", "").replaceAll("-", "");
return tabularData != null && tabularData.containsKey(cleanHeaderName) && tabularData.get(cleanHeaderName).toString().equals(value);
return tabularData != null && tabularData.containsKey(cleanHeaderName) && tabularData.get(cleanHeaderName)
.toString()
.equals(value);
}
@SuppressWarnings("unused")
@ThenAction
public void expandByPrefixRegEx(@Argument(ArgumentType.TYPE) String type, @Argument(ArgumentType.REGEX) String prefixPattern,
@Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive, @Argument(ArgumentType.INTEGER) int group) {
@SuppressWarnings("unused")
public void expandByPrefixRegEx(@Argument(ArgumentType.TYPE) String type,
@Argument(ArgumentType.REGEX) String prefixPattern,
@Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive,
@Argument(ArgumentType.INTEGER) int group) {
expandByPrefixRegEx(type, prefixPattern, patternCaseInsensitive, group, null);
}
@@ -268,11 +322,15 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void expandByPrefixRegEx(@Argument(ArgumentType.TYPE) String type, @Argument(ArgumentType.REGEX) String prefixPattern,
@Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive, @Argument(ArgumentType.INTEGER) int group,
public void expandByPrefixRegEx(@Argument(ArgumentType.TYPE) String type,
@Argument(ArgumentType.REGEX) String prefixPattern,
@Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive,
@Argument(ArgumentType.INTEGER) int group,
@Argument(ArgumentType.REGEX) String valuePattern) {
if (StringUtils.isEmpty(prefixPattern)) return;
if (StringUtils.isEmpty(prefixPattern)) {
return;
}
var compiledValuePattern = valuePattern == null ? null : Patterns.getCompiledPattern(valuePattern, patternCaseInsensitive);
var compiledPrefixPattern = Patterns.getCompiledPattern(prefixPattern, patternCaseInsensitive);
@@ -317,8 +375,10 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void expandByRegEx(@Argument(ArgumentType.TYPE) String type, @Argument(ArgumentType.REGEX) String suffixPattern,
@Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive, @Argument(ArgumentType.INTEGER) int group) {
public void expandByRegEx(@Argument(ArgumentType.TYPE) String type,
@Argument(ArgumentType.REGEX) String suffixPattern,
@Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive,
@Argument(ArgumentType.INTEGER) int group) {
expandByRegEx(type, suffixPattern, patternCaseInsensitive, group, null);
}
@@ -326,11 +386,15 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void expandByRegEx(@Argument(ArgumentType.TYPE) String type, @Argument(ArgumentType.REGEX) String suffixPattern,
@Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive, @Argument(ArgumentType.INTEGER) int group,
public void expandByRegEx(@Argument(ArgumentType.TYPE) String type,
@Argument(ArgumentType.REGEX) String suffixPattern,
@Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive,
@Argument(ArgumentType.INTEGER) int group,
@Argument(ArgumentType.REGEX) String valuePattern) {
if (StringUtils.isEmpty(suffixPattern)) return;
if (StringUtils.isEmpty(suffixPattern)) {
return;
}
var compiledValuePattern = valuePattern == null ? null : Patterns.getCompiledPattern(valuePattern, patternCaseInsensitive);
var compiledSuffixPattern = Patterns.getCompiledPattern(suffixPattern, patternCaseInsensitive);
@@ -374,7 +438,9 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void redactImage(@Argument(ArgumentType.TYPE) String type, @Argument(ArgumentType.RULE_NUMBER) int ruleNumber, @Argument(ArgumentType.STRING) String reason,
public void redactImage(@Argument(ArgumentType.TYPE) String type,
@Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
@Argument(ArgumentType.STRING) String reason,
@Argument(ArgumentType.LEGAL_BASIS) String legalBasis) {
redactImage(type, ruleNumber, reason, legalBasis, true);
@@ -383,7 +449,9 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void redactNotImage(@Argument(ArgumentType.TYPE) String type, @Argument(ArgumentType.RULE_NUMBER) int ruleNumber, @Argument(ArgumentType.STRING) String reason) {
public void redactNotImage(@Argument(ArgumentType.TYPE) String type,
@Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
@Argument(ArgumentType.STRING) String reason) {
redactImage(type, ruleNumber, reason, null, false);
}
@@ -391,7 +459,8 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void redact(@Argument(ArgumentType.TYPE) String type, @Argument(ArgumentType.RULE_NUMBER) int ruleNumber, @Argument(ArgumentType.STRING) String reason,
public void redact(@Argument(ArgumentType.TYPE) String type, @Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
@Argument(ArgumentType.STRING) String reason,
@Argument(ArgumentType.LEGAL_BASIS) String legalBasis) {
redact(type, ruleNumber, reason, legalBasis, true);
@@ -400,7 +469,8 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void redactNot(@Argument(ArgumentType.TYPE) String type, @Argument(ArgumentType.RULE_NUMBER) int ruleNumber, @Argument(ArgumentType.STRING) String reason) {
public void redactNot(@Argument(ArgumentType.TYPE) String type, @Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
@Argument(ArgumentType.STRING) String reason) {
redact(type, ruleNumber, reason, null, false);
}
@@ -408,8 +478,10 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void redactLineAfter(@Argument(ArgumentType.STRING) String start, @Argument(ArgumentType.TYPE) String asType, @Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
@Argument(ArgumentType.BOOLEAN) boolean redactEverywhere, @Argument(ArgumentType.STRING) String reason,
public void redactLineAfter(@Argument(ArgumentType.STRING) String start, @Argument(ArgumentType.TYPE) String asType,
@Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
@Argument(ArgumentType.BOOLEAN) boolean redactEverywhere,
@Argument(ArgumentType.STRING) String reason,
@Argument(ArgumentType.LEGAL_BASIS) String legalBasis) {
redactLineAfter(start, asType, ruleNumber, redactEverywhere, reason, legalBasis, true);
@@ -418,8 +490,11 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void redactNotLineAfter(@Argument(ArgumentType.STRING) String start, @Argument(ArgumentType.TYPE) String asType, @Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
@Argument(ArgumentType.BOOLEAN) boolean redactEverywhere, @Argument(ArgumentType.STRING) String reason) {
public void redactNotLineAfter(@Argument(ArgumentType.STRING) String start,
@Argument(ArgumentType.TYPE) String asType,
@Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
@Argument(ArgumentType.BOOLEAN) boolean redactEverywhere,
@Argument(ArgumentType.STRING) String reason) {
redactLineAfter(start, asType, ruleNumber, redactEverywhere, reason, null, false);
@@ -428,9 +503,12 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void redactByRegEx(@Argument(ArgumentType.REGEX) String pattern, @Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive,
@Argument(ArgumentType.INTEGER) int group, @Argument(ArgumentType.TYPE) String asType, @Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
@Argument(ArgumentType.STRING) String reason, @Argument(ArgumentType.LEGAL_BASIS) String legalBasis) {
public void redactByRegEx(@Argument(ArgumentType.REGEX) String pattern,
@Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive,
@Argument(ArgumentType.INTEGER) int group, @Argument(ArgumentType.TYPE) String asType,
@Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
@Argument(ArgumentType.STRING) String reason,
@Argument(ArgumentType.LEGAL_BASIS) String legalBasis) {
redactByRegEx(pattern, patternCaseInsensitive, group, asType, ruleNumber, reason, legalBasis, true);
}
@@ -438,8 +516,10 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void redactNotByRegEx(@Argument(ArgumentType.REGEX) String pattern, @Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive,
@Argument(ArgumentType.INTEGER) int group, @Argument(ArgumentType.TYPE) String asType, @Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
public void redactNotByRegEx(@Argument(ArgumentType.REGEX) String pattern,
@Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive,
@Argument(ArgumentType.INTEGER) int group, @Argument(ArgumentType.TYPE) String asType,
@Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
@Argument(ArgumentType.STRING) String reason) {
redactByRegEx(pattern, patternCaseInsensitive, group, asType, ruleNumber, reason, null, false);
@@ -448,9 +528,12 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void redactBetween(@Argument(ArgumentType.STRING) String start, @Argument(ArgumentType.STRING) String stop, @Argument(ArgumentType.TYPE) String asType,
@Argument(ArgumentType.RULE_NUMBER) int ruleNumber, @Argument(ArgumentType.BOOLEAN) boolean redactEverywhere,
@Argument(ArgumentType.STRING) String reason, @Argument(ArgumentType.LEGAL_BASIS) String legalBasis) {
public void redactBetween(@Argument(ArgumentType.STRING) String start, @Argument(ArgumentType.STRING) String stop,
@Argument(ArgumentType.TYPE) String asType,
@Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
@Argument(ArgumentType.BOOLEAN) boolean redactEverywhere,
@Argument(ArgumentType.STRING) String reason,
@Argument(ArgumentType.LEGAL_BASIS) String legalBasis) {
redactBetween(start, stop, asType, ruleNumber, redactEverywhere, reason, legalBasis, true);
}
@@ -458,8 +541,10 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void redactNotBetween(@Argument(ArgumentType.STRING) String start, @Argument(ArgumentType.STRING) String stop, @Argument(ArgumentType.TYPE) String asType,
@Argument(ArgumentType.RULE_NUMBER) int ruleNumber, @Argument(ArgumentType.BOOLEAN) boolean redactEverywhere,
public void redactNotBetween(@Argument(ArgumentType.STRING) String start,
@Argument(ArgumentType.STRING) String stop, @Argument(ArgumentType.TYPE) String asType,
@Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
@Argument(ArgumentType.BOOLEAN) boolean redactEverywhere,
@Argument(ArgumentType.STRING) String reason) {
redactBetween(start, stop, asType, ruleNumber, redactEverywhere, reason, null, false);
@@ -468,9 +553,13 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void redactLinesBetween(@Argument(ArgumentType.STRING) String start, @Argument(ArgumentType.STRING) String stop, @Argument(ArgumentType.TYPE) String asType,
@Argument(ArgumentType.RULE_NUMBER) int ruleNumber, @Argument(ArgumentType.BOOLEAN) boolean redactEverywhere,
@Argument(ArgumentType.STRING) String reason, @Argument(ArgumentType.LEGAL_BASIS) String legalBasis) {
public void redactLinesBetween(@Argument(ArgumentType.STRING) String start,
@Argument(ArgumentType.STRING) String stop,
@Argument(ArgumentType.TYPE) String asType,
@Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
@Argument(ArgumentType.BOOLEAN) boolean redactEverywhere,
@Argument(ArgumentType.STRING) String reason,
@Argument(ArgumentType.LEGAL_BASIS) String legalBasis) {
redactLinesBetween(start, stop, asType, ruleNumber, redactEverywhere, reason, legalBasis, true);
}
@@ -478,8 +567,11 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void redactNotLinesBetween(@Argument(ArgumentType.STRING) String start, @Argument(ArgumentType.STRING) String stop, @Argument(ArgumentType.TYPE) String asType,
@Argument(ArgumentType.RULE_NUMBER) int ruleNumber, @Argument(ArgumentType.BOOLEAN) boolean redactEverywhere,
public void redactNotLinesBetween(@Argument(ArgumentType.STRING) String start,
@Argument(ArgumentType.STRING) String stop,
@Argument(ArgumentType.TYPE) String asType,
@Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
@Argument(ArgumentType.BOOLEAN) boolean redactEverywhere,
@Argument(ArgumentType.STRING) String reason) {
redactLinesBetween(start, stop, asType, ruleNumber, redactEverywhere, reason, null, false);
@@ -488,8 +580,10 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void redactCell(@Argument(ArgumentType.STRING) String cellHeader, @Argument(ArgumentType.RULE_NUMBER) int ruleNumber, @Argument(ArgumentType.TYPE) String type,
@Argument(ArgumentType.BOOLEAN) boolean addAsRecommendations, @Argument(ArgumentType.STRING) String reason,
public void redactCell(@Argument(ArgumentType.STRING) String cellHeader,
@Argument(ArgumentType.RULE_NUMBER) int ruleNumber, @Argument(ArgumentType.TYPE) String type,
@Argument(ArgumentType.BOOLEAN) boolean addAsRecommendations,
@Argument(ArgumentType.STRING) String reason,
@Argument(ArgumentType.LEGAL_BASIS) String legalBasis) {
annotateCell(cellHeader, ruleNumber, type, true, addAsRecommendations, reason, legalBasis);
@@ -498,8 +592,11 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void redactNotCell(@Argument(ArgumentType.STRING) String cellHeader, @Argument(ArgumentType.RULE_NUMBER) int ruleNumber, @Argument(ArgumentType.TYPE) String type,
@Argument(ArgumentType.BOOLEAN) boolean addAsRecommendations, @Argument(ArgumentType.STRING) String reason) {
public void redactNotCell(@Argument(ArgumentType.STRING) String cellHeader,
@Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
@Argument(ArgumentType.TYPE) String type,
@Argument(ArgumentType.BOOLEAN) boolean addAsRecommendations,
@Argument(ArgumentType.STRING) String reason) {
annotateCell(cellHeader, ruleNumber, type, false, addAsRecommendations, reason, null);
}
@@ -507,9 +604,13 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void redactAndRecommendByRegEx(@Argument(ArgumentType.REGEX) String pattern, @Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive,
@Argument(ArgumentType.INTEGER) int group, @Argument(ArgumentType.TYPE) String asType, @Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
@Argument(ArgumentType.STRING) String reason, @Argument(ArgumentType.LEGAL_BASIS) String legalBasis) {
public void redactAndRecommendByRegEx(@Argument(ArgumentType.REGEX) String pattern,
@Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive,
@Argument(ArgumentType.INTEGER) int group,
@Argument(ArgumentType.TYPE) String asType,
@Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
@Argument(ArgumentType.STRING) String reason,
@Argument(ArgumentType.LEGAL_BASIS) String legalBasis) {
redactAndRecommendByRegEx(pattern, patternCaseInsensitive, group, asType, ruleNumber, reason, legalBasis, true);
}
@@ -517,9 +618,12 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void redactNotAndRecommendByRegEx(@Argument(ArgumentType.REGEX) String pattern, @Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive,
@Argument(ArgumentType.INTEGER) int group, @Argument(ArgumentType.TYPE) String asType,
@Argument(ArgumentType.RULE_NUMBER) int ruleNumber, @Argument(ArgumentType.STRING) String reason) {
public void redactNotAndRecommendByRegEx(@Argument(ArgumentType.REGEX) String pattern,
@Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive,
@Argument(ArgumentType.INTEGER) int group,
@Argument(ArgumentType.TYPE) String asType,
@Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
@Argument(ArgumentType.STRING) String reason) {
redactAndRecommendByRegEx(pattern, patternCaseInsensitive, group, asType, ruleNumber, reason, null, false);
}
@@ -527,8 +631,10 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void addRecommendationByRegEx(@Argument(ArgumentType.REGEX) String pattern, @Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive,
@Argument(ArgumentType.INTEGER) int group, @Argument(ArgumentType.TYPE) String asType) {
public void addRecommendationByRegEx(@Argument(ArgumentType.REGEX) String pattern,
@Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive,
@Argument(ArgumentType.INTEGER) int group,
@Argument(ArgumentType.TYPE) String asType) {
Pattern compiledPattern = Patterns.getCompiledPattern(pattern, patternCaseInsensitive);
@@ -545,11 +651,14 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void redactNotAndReference(@Argument(ArgumentType.TYPE) String type, @Argument(ArgumentType.REFERENCE_TYPE) String referenceType,
@Argument(ArgumentType.RULE_NUMBER) int ruleNumber, @Argument(ArgumentType.STRING) String reason) {
public void redactNotAndReference(@Argument(ArgumentType.TYPE) String type,
@Argument(ArgumentType.REFERENCE_TYPE) String referenceType,
@Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
@Argument(ArgumentType.STRING) String reason) {
Set<Entity> references = entities.stream().filter(entity -> entity.getType().equals(referenceType)).collect(Collectors.toSet());
Set<Entity> references = entities.stream()
.filter(entity -> entity.getType().equals(referenceType))
.collect(Collectors.toSet());
entities.forEach(entity -> {
if (entity.getType().equals(type)) {
@@ -564,8 +673,11 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void redactIfPrecededBy(@Argument(ArgumentType.STRING) String prefix, @Argument(ArgumentType.TYPE) String type, @Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
@Argument(ArgumentType.STRING) String reason, @Argument(ArgumentType.LEGAL_BASIS) String legalBasis) {
public void redactIfPrecededBy(@Argument(ArgumentType.STRING) String prefix,
@Argument(ArgumentType.TYPE) String type,
@Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
@Argument(ArgumentType.STRING) String reason,
@Argument(ArgumentType.LEGAL_BASIS) String legalBasis) {
entities.forEach(entity -> {
if (entity.getType().equals(type) && searchText.indexOf(prefix + entity.getWord()) != 1) {
@@ -580,13 +692,16 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void addRedaction(@Argument(ArgumentType.STRING) String value, @Argument(ArgumentType.TYPE) String asType, @Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
@Argument(ArgumentType.STRING) String reason, @Argument(ArgumentType.LEGAL_BASIS) String legalBasis) {
public void addRedaction(@Argument(ArgumentType.STRING) String value, @Argument(ArgumentType.TYPE) String asType,
@Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
@Argument(ArgumentType.STRING) String reason,
@Argument(ArgumentType.LEGAL_BASIS) String legalBasis) {
Set<Entity> found = findEntities(value.trim(), asType, true, true, ruleNumber, reason, legalBasis, Engine.RULE, false);
EntitySearchUtils.addEntitiesIgnoreRank(entities, found);
}
@ThenAction
@SuppressWarnings("unused")
public void ignore(@Argument(ArgumentType.TYPE) String type) {
@@ -594,18 +709,22 @@ public class Section {
entities.removeIf(entity -> entity.getType().equals(type) && entity.getEntityType().equals(EntityType.ENTITY));
}
@ThenAction
@SuppressWarnings("unused")
public void ignoreRecommendations(@Argument(ArgumentType.TYPE) String type) {
entities.removeIf(entity -> entity.getType().equals(type) && entity.getEntityType().equals(EntityType.RECOMMENDATION));
entities.removeIf(entity -> entity.getType().equals(type) && entity.getEntityType()
.equals(EntityType.RECOMMENDATION));
}
@ThenAction
@SuppressWarnings("unused")
public void expandToFalsePositiveByRegEx(@Argument(ArgumentType.TYPE) String type, @Argument(ArgumentType.STRING) String pattern,
@Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive, @Argument(ArgumentType.INTEGER) int group) {
public void expandToFalsePositiveByRegEx(@Argument(ArgumentType.TYPE) String type,
@Argument(ArgumentType.STRING) String pattern,
@Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive,
@Argument(ArgumentType.INTEGER) int group) {
Pattern compiledPattern = Patterns.getCompiledPattern(pattern, patternCaseInsensitive);
@@ -634,8 +753,10 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void addHintAnnotationByRegEx(@Argument(ArgumentType.REGEX) String pattern, @Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive,
@Argument(ArgumentType.INTEGER) int group, @Argument(ArgumentType.TYPE) String asType) {
public void addHintAnnotationByRegEx(@Argument(ArgumentType.REGEX) String pattern,
@Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive,
@Argument(ArgumentType.INTEGER) int group,
@Argument(ArgumentType.TYPE) String asType) {
Pattern compiledPattern = Patterns.getCompiledPattern(pattern, patternCaseInsensitive);
@@ -653,7 +774,8 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void addHintAnnotation(@Argument(ArgumentType.STRING) String value, @Argument(ArgumentType.TYPE) String asType) {
public void addHintAnnotation(@Argument(ArgumentType.STRING) String value,
@Argument(ArgumentType.TYPE) String asType) {
Set<Entity> found = findEntities(value.trim(), asType, true, false, 0, null, null, Engine.RULE, false);
EntitySearchUtils.addEntitiesIgnoreRank(entities, found);
@@ -662,7 +784,8 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void recommendLineAfter(@Argument(ArgumentType.STRING) String start, @Argument(ArgumentType.TYPE) String asType) {
public void recommendLineAfter(@Argument(ArgumentType.STRING) String start,
@Argument(ArgumentType.TYPE) String asType) {
String[] values = StringUtils.substringsBetween(text, start, "\n");
@@ -687,14 +810,53 @@ public class Section {
@ThenAction
@SuppressWarnings("unused")
public void highlightCell(@Argument(ArgumentType.STRING) String cellHeader, @Argument(ArgumentType.RULE_NUMBER) int ruleNumber, @Argument(ArgumentType.TYPE) String type) {
public void highlightCell(@Argument(ArgumentType.STRING) String cellHeader,
@Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
@Argument(ArgumentType.TYPE) String type) {
annotateCell(cellHeader, ruleNumber, type, false, false, null, null);
}
private void redactAndRecommendByRegEx(String pattern, boolean patternCaseInsensitive, int group, String asType, int ruleNumber, String reason, String legalBasis,
boolean redaction) {
@ThenAction
@SuppressWarnings("unused")
public void redactSection(@Argument(ArgumentType.TYPE) String type,
@Argument(ArgumentType.RULE_NUMBER) int ruleNumber,
@Argument(ArgumentType.STRING) String reason,
@Argument(ArgumentType.LEGAL_BASIS) String legalBasis) {
for (SectionArea sectionArea : sectionAreas) {
RedRectangle2D position = RedRectangle2D.builder()
.height(sectionArea.getHeight() + 4)
.width(sectionArea.getWidth() + 4)
.x(sectionArea.getTopLeft().getX() - 2)
.y(sectionArea.getTopLeft().getY() - 2)
.build();
log.debug("SectionArea: {}", sectionArea);
log.debug("Position {}", position.toString());
Image image = Image.builder()
.page(sectionArea.getPage())
.position(position)
.redaction(true)
.hasTransparency(false)
.sectionNumber(sectionNumber)
.section(headline)
.matchedRule(ruleNumber)
.legalBasis(legalBasis)
.redactionReason(reason)
.type(type)
.build();
images.add(image);
}
}
private void redactAndRecommendByRegEx(String pattern, boolean patternCaseInsensitive, int group, String asType,
int ruleNumber, String reason, String legalBasis, boolean redaction) {
Pattern compiledPattern = Patterns.getCompiledPattern(pattern, patternCaseInsensitive);
Matcher matcher = compiledPattern.matcher(searchText);
@@ -709,11 +871,12 @@ public class Section {
}
private Set<Entity> findEntities(String value, String asType, boolean caseInsensitive, boolean redacted, int ruleNumber, String reason, String legalBasis, Engine engine, boolean asRecommendation) {
private Set<Entity> findEntities(String value, String asType, boolean caseInsensitive, boolean redacted,
int ruleNumber, String reason, String legalBasis, Engine engine,
boolean asRecommendation) {
String text = caseInsensitive ? searchText.toLowerCase() : searchText;
Set<Entity> found = EntitySearchUtils.findEntities(text, new SearchImplementation(value, caseInsensitive), dictionary.getType(asType),
new FindEntityDetails(asType, headline, sectionNumber, false, false, engine, asRecommendation ? EntityType.RECOMMENDATION : EntityType.ENTITY));
Set<Entity> found = EntitySearchUtils.findEntities(text, new SearchImplementation(value, caseInsensitive), dictionary.getType(asType), new FindEntityDetails(asType, headline, sectionNumber, false, false, engine, asRecommendation ? EntityType.RECOMMENDATION : EntityType.ENTITY));
found.forEach(entity -> {
if (redacted) {
entity.setRedaction(true);
@@ -723,7 +886,26 @@ public class Section {
}
});
return EntitySearchUtils.clearAndFindPositions(found, searchableText, dictionary);
return applyResizeRedactions(EntitySearchUtils.clearAndFindPositions(found, searchableText, dictionary));
}
private Set<Entity> applyResizeRedactions(Set<Entity> entitiesWithPositions) {
if (manualRedactions == null || manualRedactions.getResizeRedactions() == null || manualRedactions.getResizeRedactions().isEmpty()){
return entitiesWithPositions;
}
entitiesWithPositions.forEach(e -> e.getPositionSequences().forEach(pos -> {
manualRedactions.getResizeRedactions().forEach(resize -> {
if (resize.getAnnotationId().equals(pos.getId()) && resize.getValue().length() < e.getWord().length()) {
int start = e.getWord().indexOf(resize.getValue());
e.setStart(e.getStart() + start);
e.setEnd(e.getEnd() - resize.getValue().length());
}
});
}));
return entitiesWithPositions;
}
@@ -753,7 +935,8 @@ public class Section {
}
private void annotateCell(String cellHeader, int ruleNumber, String type, boolean redact, boolean addAsRecommendations, String reason, String legalBasis) {
private void annotateCell(String cellHeader, int ruleNumber, String type, boolean redact,
boolean addAsRecommendations, String reason, String legalBasis) {
String cleanHeaderName = cellHeader.replaceAll("\n", "").replaceAll(" ", "").replaceAll("-", "");
@@ -800,7 +983,8 @@ public class Section {
}
private void redactLineAfter(String start, String asType, int ruleNumber, boolean redactEverywhere, String reason, String legalBasis, boolean redaction) {
private void redactLineAfter(String start, String asType, int ruleNumber, boolean redactEverywhere, String reason,
String legalBasis, boolean redaction) {
String[] values = StringUtils.substringsBetween(text, start, "\n");
@@ -819,7 +1003,8 @@ public class Section {
}
private void redactByRegEx(String pattern, boolean patternCaseInsensitive, int group, String asType, int ruleNumber, String reason, String legalBasis, boolean redaction) {
private void redactByRegEx(String pattern, boolean patternCaseInsensitive, int group, String asType, int ruleNumber,
String reason, String legalBasis, boolean redaction) {
Pattern compiledPattern = Patterns.getCompiledPattern(pattern, patternCaseInsensitive);
@@ -835,7 +1020,8 @@ public class Section {
}
private void redactBetween(String start, String stop, String asType, int ruleNumber, boolean redactEverywhere, String reason, String legalBasis, boolean redaction) {
private void redactBetween(String start, String stop, String asType, int ruleNumber, boolean redactEverywhere,
String reason, String legalBasis, boolean redaction) {
String[] values = StringUtils.substringsBetween(searchText, start, stop);
@@ -855,7 +1041,8 @@ public class Section {
}
private void redactLinesBetween(String start, String stop, String asType, int ruleNumber, boolean redactEverywhere, String reason, String legalBasis, boolean redaction) {
private void redactLinesBetween(String start, String stop, String asType, int ruleNumber, boolean redactEverywhere,
String reason, String legalBasis, boolean redaction) {
String[] values = StringUtils.substringsBetween(text, start, stop);
@@ -22,6 +22,8 @@ import com.iqser.red.service.redaction.v1.server.segmentation.ImageService;
import com.iqser.red.service.redaction.v1.server.segmentation.PdfSegmentationService;
import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
import io.micrometer.core.annotation.Timed;
import lombok.RequiredArgsConstructor;
import lombok.SneakyThrows;
import lombok.extern.slf4j.Slf4j;
@@ -55,6 +57,7 @@ public class AnalyzeService {
private final ImportedRedactionService importedRedactionService;
@Timed("analyzeDocumentStructure")
public AnalyzeResult analyzeDocumentStructure(StructureAnalyzeRequest analyzeRequest) {
long startTime = System.currentTimeMillis();
@@ -103,6 +106,7 @@ public class AnalyzeService {
}
@Timed("reanalyze")
@SneakyThrows
public AnalyzeResult reanalyze(@RequestBody AnalyzeRequest analyzeRequest) {
@@ -170,6 +174,7 @@ public class AnalyzeService {
}
@Timed("analyze")
public AnalyzeResult analyze(AnalyzeRequest analyzeRequest) {
long startTime = System.currentTimeMillis();
@@ -1,6 +1,20 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.stream.Collectors;
import java.util.stream.Stream;
import org.apache.commons.lang3.StringUtils;
import org.kie.api.runtime.KieContainer;
import org.springframework.stereotype.Service;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.AnnotationStatus;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactions;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.IdRemoval;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.ManualImageRecategorization;
import com.iqser.red.service.redaction.v1.model.AnalyzeRequest;
@@ -8,20 +22,23 @@ import com.iqser.red.service.redaction.v1.model.Engine;
import com.iqser.red.service.redaction.v1.server.classification.model.SectionText;
import com.iqser.red.service.redaction.v1.server.client.model.NerEntities;
import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
import com.iqser.red.service.redaction.v1.server.redaction.model.*;
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryModel;
import com.iqser.red.service.redaction.v1.server.redaction.model.Entities;
import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
import com.iqser.red.service.redaction.v1.server.redaction.model.EntityPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.model.EntityType;
import com.iqser.red.service.redaction.v1.server.redaction.model.Image;
import com.iqser.red.service.redaction.v1.server.redaction.model.PageEntities;
import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
import com.iqser.red.service.redaction.v1.server.redaction.model.Section;
import com.iqser.red.service.redaction.v1.server.redaction.model.SectionSearchableTextPair;
import com.iqser.red.service.redaction.v1.server.redaction.utils.EntitySearchUtils;
import com.iqser.red.service.redaction.v1.server.redaction.utils.FindEntityDetails;
import com.iqser.red.service.redaction.v1.server.redaction.utils.IdBuilder;
import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
import org.apache.commons.lang3.StringUtils;
import org.kie.api.runtime.KieContainer;
import org.springframework.stereotype.Service;
import java.util.*;
import java.util.stream.Collectors;
import java.util.stream.Stream;
@Slf4j
@Service
@@ -82,9 +99,10 @@ public class EntityRedactionService {
var idsToRemove = analyzeRequest.getManualRedactions().getIdsToRemove().stream()
.filter(idr -> idr.getStatus() == AnnotationStatus.APPROVED && !idr.isRemoveFromDictionary())
.filter(idr -> idr.getRequestDate() != null)
.filter(idr -> approvedForceRedactions.stream().noneMatch(forceRedact -> forceRedact.getRequestDate().isAfter(idr.getRequestDate())))
.filter(idr -> approvedForceRedactions.stream().noneMatch(forceRedact -> forceRedact.getAnnotationId().equals(idr.getAnnotationId()) && forceRedact.getRequestDate().isAfter(idr.getRequestDate())))
.map(IdRemoval::getAnnotationId).collect(Collectors.toSet());
if (reanalysisSection.getImages() != null && !reanalysisSection.getImages()
.isEmpty() && analyzeRequest.getManualRedactions().getImageRecategorization() != null) {
for (Image image : reanalysisSection.getImages()) {
@@ -110,14 +128,14 @@ public class EntityRedactionService {
}));
}
log.debug("Section {}, Images: {}", reanalysisSection.getSectionNumber(), reanalysisSection.getImages());
sectionSearchableTextPairs.add(new SectionSearchableTextPair(Section.builder()
.isLocal(false)
.dictionaryTypes(dictionary.getTypes())
.entities(hintsPerSectionNumber != null && hintsPerSectionNumber.containsKey(reanalysisSection.getSectionNumber()) ? Stream
.concat(entities.getEntities().stream(), hintsPerSectionNumber.get(reanalysisSection.getSectionNumber())
.stream())
.collect(Collectors.toSet()) : entities.getEntities())
.stream()).collect(Collectors.toSet()) : entities.getEntities())
.nerEntities(entities.getNerEntities())
.text(reanalysisSection.getSearchableText().getAsStringWithLinebreaks())
.searchText(reanalysisSection.getSearchableText().toString())
@@ -127,7 +145,9 @@ public class EntityRedactionService {
.searchableText(reanalysisSection.getSearchableText())
.dictionary(dictionary)
.images(reanalysisSection.getImages())
.sectionAreas(reanalysisSection.getSectionAreas())
.fileAttributes(analyzeRequest.getFileAttributes())
.manualRedactions(analyzeRequest.getManualRedactions())
.build(), reanalysisSection.getSearchableText()));
}
@@ -349,7 +349,7 @@ public class RedactionLogMergeService {
}
private List<RedactionLogComment> convert(List<Comment> comments) {
return comments.stream().map(c -> new RedactionLogComment(c.getId(), c.getUser(), c.getText(), c.getAnnotationId(),
return comments == null ? null :comments.stream().map(c -> new RedactionLogComment(c.getId(), c.getUser(), c.getText(), c.getAnnotationId(),
c.getFileId(), c.getDate(), c.getSoftDeletedTime())).collect(Collectors.toList());
}
@@ -110,7 +110,8 @@ public class EntitySearchUtils {
.length() && inner.getStart() >= word.getStart() && inner.getEnd() <= word.getEnd() && word != inner && word.getSectionNumber() == inner.getSectionNumber()) {
if (word.getEntityType().equals(EntityType.RECOMMENDATION) && inner.getEntityType().equals(EntityType.ENTITY)) {
wordsToRemove.add(word);
} else {
} else if(!(inner.getEntityType() == EntityType.FALSE_RECOMMENDATION && word.getEntityType() == EntityType.ENTITY ||
inner.getEntityType() == EntityType.ENTITY && word.getEntityType() == EntityType.FALSE_RECOMMENDATION)) {
wordsToRemove.add(inner);
}
}
@@ -165,6 +166,9 @@ public class EntitySearchUtils {
if (existing.getType().equals(found.getType())) {
existing.getEngines().addAll(found.getEngines());
existing.setLegalBasis(found.getLegalBasis());
existing.setMatchedRule(found.getMatchedRule());
existing.setRedactionReason(found.getRedactionReason());
if (existing.getEntityType().equals(EntityType.RECOMMENDATION) && found.getEntityType().equals(EntityType.ENTITY)
|| existing.getEntityType().equals(EntityType.ENTITY) && found.getEntityType().equals(EntityType.RECOMMENDATION)) {
existing.setEntityType(EntityType.ENTITY);
@@ -229,6 +233,9 @@ public class EntitySearchUtils {
}
var existingEntity = existingOptional.get();
existingEntity.getEngines().addAll(toAdd.getEngines());
existingEntity.setLegalBasis(toAdd.getLegalBasis());
existingEntity.setMatchedRule(toAdd.getMatchedRule());
existingEntity.setRedactionReason(toAdd.getRedactionReason());
} else {
existing.add(toAdd);
}
@@ -1,16 +1,31 @@
package com.iqser.red.service.redaction.v1.server.segmentation;
import com.iqser.red.service.redaction.v1.server.classification.model.*;
import java.util.ArrayList;
import java.util.Collections;
import java.util.HashMap;
import java.util.Iterator;
import java.util.List;
import java.util.Map;
import java.util.stream.Collectors;
import org.apache.commons.collections4.CollectionUtils;
import org.springframework.stereotype.Service;
import com.iqser.red.service.redaction.v1.server.classification.model.Document;
import com.iqser.red.service.redaction.v1.server.classification.model.Footer;
import com.iqser.red.service.redaction.v1.server.classification.model.Header;
import com.iqser.red.service.redaction.v1.server.classification.model.Page;
import com.iqser.red.service.redaction.v1.server.classification.model.Paragraph;
import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
import com.iqser.red.service.redaction.v1.server.classification.model.UnclassifiedText;
import com.iqser.red.service.redaction.v1.server.redaction.model.PdfImage;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Cell;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
import org.apache.commons.collections4.CollectionUtils;
import org.springframework.stereotype.Service;
import java.util.*;
import java.util.stream.Collectors;
import lombok.extern.slf4j.Slf4j;
@Slf4j
@Service
public class SectionsBuilderService {
@@ -53,8 +68,7 @@ public class SectionsBuilderService {
continue;
}
if (prev != null && current.getClassification().startsWith("H ") && !prev.getClassification()
.startsWith("H ") || !document.isHeadlines()) {
if (prev != null && current.getClassification().startsWith("H ") && !prev.getClassification().startsWith("H ") || !document.isHeadlines()) {
Paragraph chunkBlock = buildTextBlock(chunkWords, lastHeadline);
chunkBlock.setHeadline(lastHeadline);
if (document.isHeadlines()) {
@@ -100,17 +114,19 @@ public class SectionsBuilderService {
public void addImagesToSections(Document document) {
Map<Integer, SortedSet<Paragraph>> paragraphMap = new HashMap<>();
Map<Integer, List<Paragraph>> paragraphMap = new HashMap<>();
for (Paragraph paragraph : document.getParagraphs()) {
for (AbstractTextContainer container : paragraph.getPageBlocks()) {
paragraphMap.computeIfAbsent(container.getPage(), x -> new TreeSet<>()).add(paragraph);
paragraphMap.computeIfAbsent(container.getPage(), c -> new ArrayList<>()).add(paragraph);
}
}
if (paragraphMap.isEmpty()) {
Paragraph paragraph = new Paragraph();
document.getParagraphs().add(paragraph);
paragraphMap.computeIfAbsent(1, x -> new TreeSet<>()).add(paragraph);
paragraphMap.computeIfAbsent(1, x -> new ArrayList<>()).add(paragraph);
}
// first page is always a paragraph, else we can't process pages 1..N,
@@ -118,12 +134,12 @@ public class SectionsBuilderService {
if (paragraphMap.get(1) == null) {
Paragraph paragraph = new Paragraph();
document.getParagraphs().add(paragraph);
paragraphMap.computeIfAbsent(1, x -> new TreeSet<>()).add(paragraph);
paragraphMap.computeIfAbsent(1, x -> new ArrayList<>()).add(paragraph);
}
for (Page page : document.getPages()) {
for (PdfImage image : page.getImages()) {
SortedSet<Paragraph> paragraphsOnPage = paragraphMap.get(page.getPageNumber());
List<Paragraph> paragraphsOnPage = paragraphMap.get(page.getPageNumber());
if (paragraphsOnPage == null) {
int i = page.getPageNumber();
while (paragraphsOnPage == null) {
@@ -131,27 +147,63 @@ public class SectionsBuilderService {
i--;
}
}
Float perviousEnd = 0f;
for (Paragraph paragraph : paragraphsOnPage) {
Float currentEnd = 0f;
Float xMin = null;
Float yMin = null;
Float xMax = null;
Float yMax = null;
for (AbstractTextContainer abs : paragraph.getPageBlocks()) {
if (abs.getPage() != page.getPageNumber()) {
continue;
}
if (abs.getMaxY() > currentEnd) {
currentEnd = abs.getMaxY();
if (abs.getMinX() < abs.getMaxX()) {
if (xMin == null || abs.getMinX() < xMin) {
xMin = abs.getMinX();
}
if (xMax == null || abs.getMaxX() > xMax) {
xMax = abs.getMaxX();
}
} else {
if (xMin == null || abs.getMaxX() < xMin) {
xMin = abs.getMaxX();
}
if (xMax == null || abs.getMinX() > xMax) {
xMax = abs.getMinX();
}
}
if (abs.getMinY() < abs.getMaxY()) {
if (yMin == null || abs.getMinY() < yMin) {
yMin = abs.getMinY();
}
if (yMax == null || abs.getMaxY() > yMax) {
yMax = abs.getMaxY();
}
} else {
if (yMin == null || abs.getMaxY() < yMin) {
yMin = abs.getMaxY();
}
if (yMax == null || abs.getMinY() > yMax) {
yMax = abs.getMinY();
}
}
}
if (image.getPosition().getY() >= perviousEnd && image.getPosition().getY() <= currentEnd) {
log.debug("Image position x: {}, y: {}", image.getPosition().getX(), image.getPosition().getY());
log.debug("Paragraph position xMin: {}, xMax: {}, yMin: {}, yMax: {}", xMin, xMax, yMin, yMax);
if (xMin != null && xMax != null && yMin != null && yMax != null && image.getPosition().getX() >= xMin && image.getPosition()
.getX() <= xMax && image.getPosition().getY() >= yMin && image.getPosition().getY() <= yMax) {
paragraph.getImages().add(image);
image.setAppendedToParagraph(true);
}
perviousEnd = currentEnd;
}
if (!image.isAppendedToParagraph()) {
paragraphsOnPage.first().getImages().add(image);
log.debug("Image uses first paragraph");
paragraphsOnPage.get(0).getImages().add(image);
image.setAppendedToParagraph(true);
}
}
@@ -166,9 +218,7 @@ public class SectionsBuilderService {
List<Cell> previousTableNonHeaderRow = getRowWithNonHeaderCells(previousTable);
List<Cell> tableNonHeaderRow = getRowWithNonHeaderCells(currentTable);
// Allow merging of tables if header row is separated from first logical non-header row
if (previousTableNonHeaderRow.isEmpty() && previousTable.getRowCount() == 1 && previousTable.getRows()
.get(0)
.size() == tableNonHeaderRow.size()) {
if (previousTableNonHeaderRow.isEmpty() && previousTable.getRowCount() == 1 && previousTable.getRows().get(0).size() == tableNonHeaderRow.size()) {
previousTableNonHeaderRow = previousTable.getRows().get(0).stream().map(cell -> {
Cell fakeCell = new Cell(cell.getPoints()[0], cell.getPoints()[2]);
fakeCell.setHeaderCells(Collections.singletonList(cell));
@@ -178,8 +228,7 @@ public class SectionsBuilderService {
if (previousTableNonHeaderRow.size() == tableNonHeaderRow.size()) {
for (int i = currentTable.getRowCount() - 1; i >= 0; i--) { // Non header rows are most likely at bottom of table
List<Cell> row = currentTable.getRows().get(i);
if (row.size() == tableNonHeaderRow.size() && row.stream()
.allMatch(cell -> cell.getHeaderCells().isEmpty())) {
if (row.size() == tableNonHeaderRow.size() && row.stream().allMatch(cell -> cell.getHeaderCells().isEmpty())) {
for (int j = 0; j < row.size(); j++) {
row.get(j).setHeaderCells(previousTableNonHeaderRow.get(j).getHeaderCells());
}
@@ -229,24 +278,20 @@ public class SectionsBuilderService {
TextBlock wordBlock = (TextBlock) container;
if (textBlock == null) {
textBlock = new TextBlock(wordBlock.getMinX(), wordBlock.getMaxX(), wordBlock.getMinY(), wordBlock.getMaxY(), wordBlock
.getSequences(), wordBlock.getRotation());
textBlock = new TextBlock(wordBlock.getMinX(), wordBlock.getMaxX(), wordBlock.getMinY(), wordBlock.getMaxY(), wordBlock.getSequences(), wordBlock.getRotation());
textBlock.setPage(wordBlock.getPage());
} else if (splitByTable) {
textBlock = new TextBlock(wordBlock.getMinX(), wordBlock.getMaxX(), wordBlock.getMinY(), wordBlock.getMaxY(), wordBlock
.getSequences(), wordBlock.getRotation());
textBlock = new TextBlock(wordBlock.getMinX(), wordBlock.getMaxX(), wordBlock.getMinY(), wordBlock.getMaxY(), wordBlock.getSequences(), wordBlock.getRotation());
textBlock.setPage(wordBlock.getPage());
alreadyAdded = false;
} else if (pageBefore != -1 && wordBlock.getPage() != pageBefore) {
textBlock.setPage(pageBefore);
paragraph.getPageBlocks().add(textBlock);
textBlock = new TextBlock(wordBlock.getMinX(), wordBlock.getMaxX(), wordBlock.getMinY(), wordBlock.getMaxY(), wordBlock
.getSequences(), wordBlock.getRotation());
textBlock = new TextBlock(wordBlock.getMinX(), wordBlock.getMaxX(), wordBlock.getMinY(), wordBlock.getMaxY(), wordBlock.getSequences(), wordBlock.getRotation());
textBlock.setPage(wordBlock.getPage());
} else {
TextBlock spatialEntity = textBlock.union(wordBlock);
textBlock.resize(spatialEntity.getMinX(), spatialEntity.getMinY(), spatialEntity.getWidth(), spatialEntity
.getHeight());
textBlock.resize(spatialEntity.getMinX(), spatialEntity.getMinY(), spatialEntity.getWidth(), spatialEntity.getHeight());
}
pageBefore = wordBlock.getPage();
splitByTable = false;
@@ -268,11 +313,7 @@ public class SectionsBuilderService {
private boolean hasInvalidHeaderInformation(Table table) {
return table.getRows()
.stream()
.flatMap(row -> row.stream().filter(cell -> CollectionUtils.isNotEmpty(cell.getHeaderCells())))
.findAny()
.isEmpty();
return table.getRows().stream().flatMap(row -> row.stream().filter(cell -> CollectionUtils.isNotEmpty(cell.getHeaderCells()))).findAny().isEmpty();
}
@@ -2,6 +2,7 @@ package com.iqser.red.service.redaction.v1.server.storage;
import com.dslplatform.json.DslJson;
import com.dslplatform.json.runtime.Settings;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.dossier.file.FileType;
import com.iqser.red.service.redaction.v1.model.ImportedRedactions;
import com.iqser.red.service.redaction.v1.model.RedactionLog;
@@ -28,6 +29,7 @@ import java.io.InputStream;
public class RedactionStorageService {
private final StorageService storageService;
private final ObjectMapper objectMapper;
private final DslJson<Object> dslJson = new DslJson<>(Settings.basicSetup());
@@ -42,7 +44,15 @@ public class RedactionStorageService {
@SneakyThrows
public void storeObject(String dossierId, String fileId, FileType fileType, Object any) {
var baos = new ByteArrayOutputStream();
dslJson.serialize(any, baos);
try {
dslJson.serialize(any, baos);
} catch (com.dslplatform.json.SerializationException e){
// Fails on file 49 Cyprodinil - EU AIR3 - MCA Section 8 Supplement - Ecotoxicological studies on the active substance.pdf
var bytes = objectMapper.writeValueAsBytes(any);
storageService.storeObject(StorageIdUtils.getStorageId(dossierId, fileId, fileType), bytes);
dslJson.newWriter();
return;
}
storageService.storeObject(StorageIdUtils.getStorageId(dossierId, fileId, fileType), baos.toByteArray());
}
@@ -1,6 +1,7 @@
package com.iqser.red.service.redaction.v1.server;
import com.amazonaws.services.s3.AmazonS3;
import com.fasterxml.jackson.core.type.TypeReference;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.AnnotationStatus;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.Comment;
@@ -29,7 +30,9 @@ import com.iqser.red.service.redaction.v1.server.redaction.utils.TextNormalizati
import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
import com.iqser.red.storage.commons.StorageAutoConfiguration;
import com.iqser.red.storage.commons.service.StorageService;
import lombok.SneakyThrows;
import org.apache.commons.io.IOUtils;
import org.junit.After;
import org.junit.Before;
@@ -58,6 +61,7 @@ import java.io.*;
import java.net.URL;
import java.nio.charset.StandardCharsets;
import java.time.OffsetDateTime;
import java.time.ZoneOffset;
import java.util.*;
import java.util.stream.Collectors;
@@ -214,16 +218,16 @@ public class RedactionIntegrationTest {
}
private void mockDictionaryCalls(Long version){
private void mockDictionaryCalls(Long version) {
when(dictionaryClient.getDictionaryForType(VERTEBRATE + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).thenReturn(getDictionaryResponse(VERTEBRATE, false));
when(dictionaryClient.getDictionaryForType(ADDRESS + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).thenReturn(getDictionaryResponse(ADDRESS, false));
when(dictionaryClient.getDictionaryForType(AUTHOR + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).thenReturn(getDictionaryResponse(AUTHOR, false));
when(dictionaryClient.getDictionaryForType(SPONSOR + ":" + TEST_DOSSIER_TEMPLATE_ID,version)).thenReturn(getDictionaryResponse(SPONSOR, false));
when(dictionaryClient.getDictionaryForType(SPONSOR + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).thenReturn(getDictionaryResponse(SPONSOR, false));
when(dictionaryClient.getDictionaryForType(NO_REDACTION_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).thenReturn(getDictionaryResponse(NO_REDACTION_INDICATOR, false));
when(dictionaryClient.getDictionaryForType(REDACTION_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).thenReturn(getDictionaryResponse(REDACTION_INDICATOR, false));
when(dictionaryClient.getDictionaryForType(HINT_ONLY + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).thenReturn(getDictionaryResponse(HINT_ONLY, false));
when(dictionaryClient.getDictionaryForType(MUST_REDACT + ":" + TEST_DOSSIER_TEMPLATE_ID,version)).thenReturn(getDictionaryResponse(MUST_REDACT, false));
when(dictionaryClient.getDictionaryForType(MUST_REDACT + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).thenReturn(getDictionaryResponse(MUST_REDACT, false));
when(dictionaryClient.getDictionaryForType(PUBLISHED_INFORMATION + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).thenReturn(getDictionaryResponse(PUBLISHED_INFORMATION, false));
when(dictionaryClient.getDictionaryForType(TEST_METHOD + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).thenReturn(getDictionaryResponse(TEST_METHOD, false));
when(dictionaryClient.getDictionaryForType(PII + ":" + TEST_DOSSIER_TEMPLATE_ID, version)).thenReturn(getDictionaryResponse(PII, false));
@@ -238,6 +242,7 @@ public class RedactionIntegrationTest {
}
@Test
public void test270Rotated() {
@@ -491,14 +496,12 @@ public class RedactionIntegrationTest {
deleted.add("David Chubb");
deleted.add("mouse");
reanlysisVersions.put("mouse", 3L);
when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(3L);
when(dictionaryClient.getDictionaryForType(VERTEBRATE, null)).thenReturn(getDictionaryResponse(VERTEBRATE, false));
start = System.currentTimeMillis();
ManualRedactions manualRedactions = new ManualRedactions();
@@ -669,7 +672,6 @@ public class RedactionIntegrationTest {
when(dictionaryClient.getDictionaryForType(VERTEBRATE, null)).thenReturn(getDictionaryResponse(VERTEBRATE, false));
start = System.currentTimeMillis();
ManualRedactions manualRedactions = new ManualRedactions();
@@ -715,6 +717,71 @@ public class RedactionIntegrationTest {
}
@Test
public void testRemovePublishedInformations() throws IOException {
long start = System.currentTimeMillis();
ClassPathResource colorsResource = new ClassPathResource("colors/colors.json");
var colors = objectMapper.readValue(colorsResource.getInputStream(), Colors.class);
ClassPathResource typeResource = new ClassPathResource("colors/types.json");
TypeReference<List<Type>> typeRefForTypes = new TypeReference<>() {
};
List<Type> types = objectMapper.readValue(typeResource.getInputStream(), typeRefForTypes);
AnalyzeRequest request = prepareStorage("files/new/PublishedInformationTest.pdf");
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
ManualRedactions manualRedactions = new ManualRedactions();
manualRedactions.getIdsToRemove()
.add(IdRemoval.builder()
.annotationId("308dab9015bfafd911568cffe0a7f7de")
.fileId(TEST_FILE_ID)
.status(AnnotationStatus.APPROVED)
.requestDate(OffsetDateTime.of(2022, 05, 23, 8, 30, 07, 475479, ZoneOffset.UTC))
.processedDate(OffsetDateTime.of(2022, 05, 23, 8, 30, 07, 483651, ZoneOffset.UTC))
.build());
manualRedactions.getForceRedactions()
.add(ManualForceRedaction.builder()
.annotationId("0b56ea1a87c83f351df177315af94f0d")
.fileId(TEST_FILE_ID)
.status(AnnotationStatus.APPROVED)
.requestDate(OffsetDateTime.of(2022, 05, 23, 9, 30, 15, 4653, ZoneOffset.UTC))
.processedDate(OffsetDateTime.of(2022, 05, 23, 9, 30, 15, 794, ZoneOffset.UTC))
.build());
manualRedactions.getIdsToRemove()
.add(IdRemoval.builder()
.annotationId("0b56ea1a87c83f351df177315af94f0d")
.fileId(TEST_FILE_ID)
.status(AnnotationStatus.APPROVED)
.requestDate(OffsetDateTime.of(2022, 05, 23, 8, 30, 23, 961721, ZoneOffset.UTC))
.processedDate(OffsetDateTime.of(2022, 05, 23, 8, 30, 23, 96528, ZoneOffset.UTC))
.build());
request.setManualRedactions(manualRedactions);
AnalyzeResult result = analyzeService.analyze(request);
AnnotateResponse annotateResponse = annotationService.annotate(AnnotateRequest.builder()
.manualRedactions(manualRedactions)
.colors(colors)
.types(types)
.dossierId(TEST_DOSSIER_ID)
.fileId(TEST_FILE_ID)
.build());
try (FileOutputStream fileOutputStream = new FileOutputStream(OsUtils.getTemporaryDirectory() + "/Annotated.pdf")) {
fileOutputStream.write(annotateResponse.getDocument());
}
long end = System.currentTimeMillis();
System.out.println("duration: " + (end - start));
System.out.println("numberOfPages: " + result.getNumberOfPages());
}
@Test
public void testTableRedaction() throws IOException {
@@ -740,6 +807,61 @@ public class RedactionIntegrationTest {
}
@Test
public void testFindDictionaryEntryInResizedEntryPosition() throws IOException {
System.out.println("testResizeDictFound");
ClassPathResource colorsResource = new ClassPathResource("colors/colors.json");
var colors = objectMapper.readValue(colorsResource.getInputStream(), Colors.class);
ClassPathResource typeResource = new ClassPathResource("colors/types.json");
TypeReference<List<Type>> typeRefForTypes = new TypeReference<>() {
};
List<Type> types = objectMapper.readValue(typeResource.getInputStream(), typeRefForTypes);
long start = System.currentTimeMillis();
AnalyzeRequest request = prepareStorage("files/new/ResizeRedactionTestDoc.pdf");
ManualRedactions manualRedactions = new ManualRedactions();
manualRedactions.getResizeRedactions()
.add(ManualResizeRedaction.builder()
.annotationId("fd5ee82900beb7383f00480dea417569")
.fileId(TEST_FILE_ID)
.status(AnnotationStatus.APPROVED)
.requestDate(OffsetDateTime.of(2022, 05, 23, 8, 30, 07, 475479, ZoneOffset.UTC))
.processedDate(OffsetDateTime.of(2022, 05, 23, 8, 30, 07, 483651, ZoneOffset.UTC))
.value("Regina")
.positions(List.of(new Rectangle(147.86f, 225.9895f, 31.17696f, 10.048125f, 1)))
.textBefore("Switzerland Contact point: ")
.textAfter(" Dorn Phone:")
.build());
request.setManualRedactions(manualRedactions);
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
AnalyzeResult result = analyzeService.analyze(request);
AnnotateResponse annotateResponse = annotationService.annotate(AnnotateRequest.builder()
.manualRedactions(manualRedactions)
.colors(colors)
.types(types)
.dossierId(TEST_DOSSIER_ID)
.fileId(TEST_FILE_ID)
.build());
try (FileOutputStream fileOutputStream = new FileOutputStream(OsUtils.getTemporaryDirectory() + "/Annotated.pdf")) {
fileOutputStream.write(annotateResponse.getDocument());
}
long end = System.currentTimeMillis();
System.out.println("duration: " + (end - start));
System.out.println("numberOfPages: " + result.getNumberOfPages());
}
@Test
public void testManualRedaction() throws IOException {
@@ -1539,15 +1661,16 @@ public class RedactionIntegrationTest {
}
}
@Test
public void testExpandByPrefixRegEx() throws IOException {
assertThat(dictionary.get(AUTHOR).contains("Robinson"));
assertThat(! dictionary.get(AUTHOR).contains("Mrs. Robinson"));
assertThat(!dictionary.get(AUTHOR).contains("Mrs. Robinson"));
assertThat(dictionary.get(AUTHOR).contains("Bojangles"));
assertThat(! dictionary.get(AUTHOR).contains("Mr. Bojangles"));
assertThat(!dictionary.get(AUTHOR).contains("Mr. Bojangles"));
assertThat(dictionary.get(AUTHOR).contains("Tambourine Man"));
assertThat(! dictionary.get(AUTHOR).contains("Mr. Tambourine Man"));
assertThat(!dictionary.get(AUTHOR).contains("Mr. Tambourine Man"));
String fileName = "files/mr-mrs.pdf";
String outputFileName = OsUtils.getTemporaryDirectory() + "/Annotated.pdf";
@@ -1578,6 +1701,7 @@ public class RedactionIntegrationTest {
assertThat(values).contains("Mr. Tambourine Man");
}
@SneakyThrows
private AnalyzeRequest prepareStorage(InputStream stream) {
@@ -1,6 +1,10 @@
package com.iqser.red.service.redaction.v1.server.annotate;
import java.util.List;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactions;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.configuration.Colors;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.type.Type;
import lombok.AllArgsConstructor;
import lombok.Builder;
@@ -17,4 +21,6 @@ public class AnnotateRequest {
private String dossierTemplateId;
private String fileId;
private ManualRedactions manualRedactions;
private Colors colors;
private List<Type> types;
}
@@ -46,6 +46,8 @@ public class AnnotationService {
.manualRedactions(annotateRequest.getManualRedactions())
.dossierId(annotateRequest.getDossierId())
.dossierTemplateId(annotateRequest.getDossierTemplateId())
.colors(annotateRequest.getColors())
.types(annotateRequest.getTypes())
.build());
var sectionsGrid = redactionStorageService.getSectionGrid(annotateRequest.getDossierId(), annotateRequest.getFileId());
@@ -0,0 +1,13 @@
{
"dossierTemplateId": "31039447-9040-4376-9ca7-614e56b284b9",
"defaultColor": "#9398a0",
"requestAdd": "#04b093",
"requestRemove": "#04b093",
"notRedacted": "#c498fa",
"analysisColor": "#dd4d50",
"updatedColor": "#fdbd00",
"dictionaryRequestColor": "#5b97db",
"manualRedactionColor": "#9398a0",
"previewColor": "#9398a0",
"ignoredHintColor": "#e7d4ff"
}
@@ -0,0 +1,223 @@
[
{
"id": "CBI_address:31039447-9040-4376-9ca7-614e56b284b9",
"type": "CBI_address",
"hexColor": "#9398a0",
"recommendationHexColor": "#8df06c",
"rank": 140,
"isHint": false,
"dossierTemplateId": "31039447-9040-4376-9ca7-614e56b284b9",
"isCaseInsensitive": false,
"isRecommendation": false,
"description": "All site names and addresses, and location (e.g. Syngenta, Monthey, GPS Co-ordinates, Mr Smith of … providing the…). Except addresses in published literature and the applicant address.",
"addToDictionaryAction": true,
"label": "CBI Address",
"hasDictionary": true,
"systemManaged": false,
"autoHideSkipped": false
},
{
"id": "CBI_author:31039447-9040-4376-9ca7-614e56b284b9",
"type": "CBI_author",
"hexColor": "#9398a0",
"recommendationHexColor": "#8df06c",
"rank": 130,
"isHint": false,
"dossierTemplateId": "31039447-9040-4376-9ca7-614e56b284b9",
"isCaseInsensitive": false,
"isRecommendation": false,
"description": "All authors named in the study documentation. Except names in published literature.",
"addToDictionaryAction": true,
"label": "CBI Author",
"hasDictionary": true,
"systemManaged": false,
"autoHideSkipped": false
},
{
"id": "PII:31039447-9040-4376-9ca7-614e56b284b9",
"type": "PII",
"hexColor": "#9398a0",
"recommendationHexColor": "#8df06c",
"rank": 150,
"isHint": false,
"dossierTemplateId": "31039447-9040-4376-9ca7-614e56b284b9",
"isCaseInsensitive": false,
"isRecommendation": false,
"description": "Not authors but listed in the document: Names, signatures, telephone, email etc.; e.g. Reg Manager, QA Manager",
"addToDictionaryAction": true,
"label": "PII",
"hasDictionary": true,
"systemManaged": false,
"autoHideSkipped": false
},
{
"id": "formula:31039447-9040-4376-9ca7-614e56b284b9",
"type": "formula",
"hexColor": "#036ffc",
"recommendationHexColor": "#8df06c",
"rank": 1002,
"isHint": true,
"dossierTemplateId": "31039447-9040-4376-9ca7-614e56b284b9",
"isCaseInsensitive": true,
"isRecommendation": false,
"description": "Empty dictionary used to configure formula colors.",
"addToDictionaryAction": false,
"label": "Formula",
"hasDictionary": false,
"systemManaged": true,
"autoHideSkipped": false
},
{
"id": "isHint_only:31039447-9040-4376-9ca7-614e56b284b9",
"type": "isHint_only",
"hexColor": "#fa98f7",
"recommendationHexColor": "#8df06c",
"rank": 50,
"isHint": true,
"dossierTemplateId": "31039447-9040-4376-9ca7-614e56b284b9",
"isCaseInsensitive": true,
"isRecommendation": false,
"description": "Entries of this dictionary will be highlighted only",
"addToDictionaryAction": false,
"label": "isHint Only",
"hasDictionary": true,
"systemManaged": false,
"autoHideSkipped": false
},
{
"id": "image:31039447-9040-4376-9ca7-614e56b284b9",
"type": "image",
"hexColor": "#bdd6ff",
"recommendationHexColor": "#8df06c",
"rank": 999,
"isHint": true,
"dossierTemplateId": "31039447-9040-4376-9ca7-614e56b284b9",
"isCaseInsensitive": true,
"isRecommendation": false,
"description": "Empty dictionary used to configure image colors.",
"addToDictionaryAction": false,
"label": "Image",
"hasDictionary": false,
"systemManaged": true,
"autoHideSkipped": false
},
{
"id": "logo:31039447-9040-4376-9ca7-614e56b284b9",
"type": "logo",
"hexColor": "#9398a0",
"recommendationHexColor": "#8df06c",
"rank": 1001,
"isHint": false,
"dossierTemplateId": "31039447-9040-4376-9ca7-614e56b284b9",
"isCaseInsensitive": true,
"isRecommendation": false,
"description": "Empty dictionary used to configure logo colors.",
"addToDictionaryAction": false,
"label": "Logo",
"hasDictionary": false,
"systemManaged": true,
"autoHideSkipped": false
},
{
"id": "must_redact:31039447-9040-4376-9ca7-614e56b284b9",
"type": "must_redact",
"hexColor": "#9398a0",
"recommendationHexColor": "#8df06c",
"rank": 100,
"isHint": false,
"dossierTemplateId": "31039447-9040-4376-9ca7-614e56b284b9",
"isCaseInsensitive": true,
"isRecommendation": false,
"description": "Entries of this dictionary get redacted wherever found.",
"addToDictionaryAction": false,
"label": "Must Redact",
"hasDictionary": true,
"systemManaged": false,
"autoHideSkipped": false
},
{
"id": "ocr:31039447-9040-4376-9ca7-614e56b284b9",
"type": "ocr",
"hexColor": "#bdd6ff",
"recommendationHexColor": "#8df06c",
"rank": 1000,
"isHint": true,
"dossierTemplateId": "31039447-9040-4376-9ca7-614e56b284b9",
"isCaseInsensitive": true,
"isRecommendation": false,
"description": "Empty dictionary used to configure ocr colors.",
"addToDictionaryAction": false,
"label": "Ocr",
"hasDictionary": false,
"systemManaged": true,
"autoHideSkipped": false
},
{
"id": "signature:31039447-9040-4376-9ca7-614e56b284b9",
"type": "signature",
"hexColor": "#9398a0",
"recommendationHexColor": "#8df06c",
"rank": 1003,
"isHint": false,
"dossierTemplateId": "31039447-9040-4376-9ca7-614e56b284b9",
"isCaseInsensitive": true,
"isRecommendation": false,
"description": "Empty dictionary used to configure signature colors.",
"addToDictionaryAction": false,
"label": "Signature",
"hasDictionary": false,
"systemManaged": true,
"autoHideSkipped": false
},
{
"id": "imported_redaction:31039447-9040-4376-9ca7-614e56b284b9",
"type": "imported_redaction",
"hexColor": "#f0f0c0",
"recommendationHexColor": "#8df06c",
"rank": 9999,
"isHint": false,
"dossierTemplateId": "31039447-9040-4376-9ca7-614e56b284b9",
"isCaseInsensitive": false,
"isRecommendation": false,
"description": "Redaction Annotations that were imported from documents",
"addToDictionaryAction": false,
"label": "Imported Redaction",
"hasDictionary": false,
"systemManaged": true,
"autoHideSkipped": true
},
{
"id": "published_information:31039447-9040-4376-9ca7-614e56b284b9",
"type": "published_information",
"hexColor": "#85ebff",
"recommendationHexColor": "#8df06c",
"rank": 70,
"isHint": true,
"dossierTemplateId": "31039447-9040-4376-9ca7-614e56b284b9",
"isCaseInsensitive": false,
"isRecommendation": false,
"description": "Manual managed list of public journals and papers that need no redaction",
"addToDictionaryAction": true,
"label": "Published Information",
"hasDictionary": true,
"systemManaged": false,
"autoHideSkipped": false
},
{
"id": "dossier_redaction:31039447-9040-4376-9ca7-614e56b284b9:5dfb2724-74a4-4a1a-a1eb-165e7943ffcd",
"type": "dossier_redaction",
"hexColor": "#9398a0",
"recommendationHexColor": null,
"rank": 1500,
"isHint": false,
"dossierTemplateId": "31039447-9040-4376-9ca7-614e56b284b9",
"isCaseInsensitive": false,
"isRecommendation": false,
"description": "Entries in this dictionary will only be redacted in this dossier",
"addToDictionaryAction": false,
"label": "Dossier Redaction",
"hasDictionary": true,
"systemManaged": true,
"autoHideSkipped": false
}
]
@@ -9,3 +9,4 @@ Naka-27 Aomachi, Nomi, Ishikawa 923-1101, Japan, JP
Özgür U. Reyhan
Sude Halide Nurullah
Xinyi Y. Tao
Dorn
@@ -86,3 +86,4 @@ Toxicol Sci
Toxicol Sci.
Toxicol Sci. 1
Test Ignored Hint Published Information
Workshop