Compare commits

..
Author SHA1 Message Date
Timo Bejan 3013dc95f6 Pull request #448: RED-4835 - entity position not calculated correctly for duplicates where 1 is marked as false positive
Merge in RED/redaction-service from RED-4835 to master

* commit '6e46cad2c5466136c7191042e6834eb074fc5911':
  RED-4835 - cleanup
  RED-4835 - entity position not calculated correctly for duplicates where 1 is marked as false positive
2022-08-08 16:39:49 +02:00
Timo Bejan 6e46cad2c5 RED-4835 - cleanup 2022-08-08 13:31:22 +03:00
Timo Bejan c41e230f85 RED-4835 - entity position not calculated correctly for duplicates where 1 is marked as false positive 2022-08-08 13:30:18 +03:00
Ali Oezyetimoglu 16ea8364df Pull request #447: RED-4867: Sonar issues: RedactionService
Merge in RED/redaction-service from RED-4867-rs1 to master

* commit '3ec1e20e417e65907448930cf7f8eb9713874fb9':
  RED-4867: Sonar issues: RedactionService
2022-08-01 16:00:29 +02:00
Ali Oezyetimoglu 3ec1e20e41 RED-4867: Sonar issues: RedactionService 2022-08-01 15:55:22 +02:00
Dominique Eiflaender ce1f8e9117 Pull request #434: RED-4753: Reduced size of TEXT File
Merge in RED/redaction-service from RED-4753 to master

* commit '55bebe8541cfded8a456b63dbd8d8b7e79bab33f':
  RED-4753: Reduced size of TEXT File a bit more
  RED-4753: Reduced size of TEXT File
2022-08-01 11:04:25 +02:00
Kresnadi Budisantoso b7e97890be Pull request #441: RED-4829 Fix wrong annotation
Merge in RED/redaction-service from kbudisantoso/Sectionjava-1659012500262 to master

* commit '47de526b4bd451d302317647cb05ac685e069622':
  RED-4829 Fix wrong annotation
2022-08-01 09:07:11 +02:00
Dominique Eiflaender ec49945682 Pull request #446: RED-4843: Disable jsondsl per default
Merge in RED/redaction-service from RED-4843 to master

* commit 'b64222938c64eeb006d62807a705918ffd2c585b':
  RED-4843: Disable jsondsl per default
2022-07-29 12:47:38 +02:00
deiflaender b64222938c RED-4843: Disable jsondsl per default 2022-07-29 12:43:35 +02:00
Timo Bejan e4823e20d4 Pull request #444: RED-4799 - remove FP entities from redactionlog
Merge in RED/redaction-service from RED-4799-3 to master

* commit '53428ec65296b9fac2c206e7bd89916c933fb5c8':
  RED-4799 - remove FP entities from redactionlog
2022-07-29 10:53:51 +02:00
Timo Bejan 53428ec652 RED-4799 - remove FP entities from redactionlog 2022-07-29 11:50:38 +03:00
Dominique Eiflaender ca270fb7de Pull request #443: RED-4843: Upgraded storage commons
Merge in RED/redaction-service from RED-4843 to master

* commit '06fe0dbd97cdf2011be17df07f8c409a221530a4':
  RED-4843: Upgraded storage commons
2022-07-29 10:41:24 +02:00
deiflaender 06fe0dbd97 RED-4843: Upgraded storage commons 2022-07-29 10:27:18 +02:00
Kresnadi Budisantoso 47de526b4b RED-4829 Fix wrong annotation 2022-07-28 14:48:39 +02:00
Timo Bejan 1d8e86e4f6 Pull request #439: RED-4799
Merge in RED/redaction-service from RED-4799-fix to master

* commit '2b7972315f655bd296a03cae8cc5e4846d47bbce':
  RED-4799
2022-07-27 11:58:11 +02:00
Timo Bejan 2b7972315f RED-4799 2022-07-27 12:54:51 +03:00
Philipp Schramm 0af853dbfc Pull request #436: RED-4510: Added generated RedactionLog Json files and optimizations for RulesTest.java for Bamboo
Merge in RED/redaction-service from RED-4510-Rework to master

* commit '0544a42117a742de70325cd1a84e57d6829aaa25':
  RED-4510: Added generated RedactionLog Json files and optimizations for RulesTest.java for Bamboo
2022-07-26 17:08:59 +02:00
Philipp Schramm 0544a42117 RED-4510: Added generated RedactionLog Json files and optimizations for RulesTest.java for Bamboo 2022-07-26 17:06:04 +02:00
deiflaender 55bebe8541 RED-4753: Reduced size of TEXT File a bit more 2022-07-26 11:55:25 +02:00
Timo Bejan 8bdfd6747d Pull request #435: RED-4686
Merge in RED/redaction-service from tbejan/pomxml-1658825710723 to master

* commit '80c0c25c069995790d6bd043657f50dc8de0a451':
  RED-4686
2022-07-26 11:01:22 +02:00
Timo Bejan 80c0c25c06 RED-4686 2022-07-26 10:55:17 +02:00
deiflaender 1cc66a3092 RED-4753: Reduced size of TEXT File 2022-07-26 09:45:46 +02:00
Timo Bejan 17baf9c0eb Pull request #433: RED-4686 - updated cyclic deps
Merge in RED/redaction-service from RED-4686 to master

* commit '090a6196000dfcd7a447c54224fba8eda4605380':
  RED-4686 - updated cyclic deps
2022-07-26 09:25:58 +02:00
Timo Bejan 090a619600 RED-4686 - updated cyclic deps 2022-07-26 10:22:50 +03:00
34 changed files with 454 additions and 396 deletions
+1 -1
View File
@@ -32,7 +32,7 @@
<dependency>
<groupId>com.iqser.red</groupId>
<artifactId>platform-commons-dependency</artifactId>
<version>1.17.0</version>
<version>1.20.0</version>
<scope>import</scope>
<type>pom</type>
</dependency>
@@ -12,7 +12,7 @@
<artifactId>redaction-service-api-v1</artifactId>
<properties>
<persistence-service.version>1.240.0</persistence-service.version>
<persistence-service.version>1.254.0</persistence-service.version>
</properties>
<dependencies>
@@ -35,9 +35,7 @@ public class FloatFrequencyCounter {
public Float getMostPopular() {
Map.Entry<Float, Integer> mostPopular = null;
for (Map.Entry<Float, Integer> entry : countPerValue.entrySet()) {
if (mostPopular == null) {
mostPopular = entry;
} else if (entry.getValue() >= mostPopular.getValue()) {
if (mostPopular == null || entry.getValue() >= mostPopular.getValue()) {
mostPopular = entry;
}
}
@@ -61,9 +59,7 @@ public class FloatFrequencyCounter {
public Float getHighest() {
Float highest = null;
for (Float value : countPerValue.keySet()) {
if (highest == null) {
highest = value;
} else if (value > highest) {
if (highest == null || value > highest) {
highest = value;
}
}
@@ -37,9 +37,7 @@ public class StringFrequencyCounter {
Map.Entry<String, Integer> mostPopular = null;
for (Map.Entry<String, Integer> entry : countPerValue.entrySet()) {
if (mostPopular == null) {
mostPopular = entry;
} else if (entry.getValue() > mostPopular.getValue()) {
if (mostPopular == null || entry.getValue() > mostPopular.getValue()) {
mostPopular = entry;
}
}
@@ -23,16 +23,30 @@ public class TextBlock extends AbstractTextContainer {
@Builder.Default
private List<TextPositionSequence> sequences = new ArrayList<>();
@JsonIgnore
private int rotation;
@JsonIgnore
private String mostPopularWordFont;
@JsonIgnore
private String mostPopularWordStyle;
@JsonIgnore
private float mostPopularWordFontSize;
@JsonIgnore
private float mostPopularWordHeight;
@JsonIgnore
private float mostPopularWordSpaceWidth;
@JsonIgnore
private float highestFontSize;
@JsonIgnore
private String classification;
@@ -1,29 +1,33 @@
package com.iqser.red.service.redaction.v1.server.controller;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactions;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.dossier.file.FileType;
import com.iqser.red.service.redaction.v1.model.*;
import com.iqser.red.service.redaction.v1.resources.RedactionResource;
import com.iqser.red.service.redaction.v1.server.classification.model.Document;
import com.iqser.red.service.redaction.v1.server.classification.model.Page;
import com.iqser.red.service.redaction.v1.server.exception.NotFoundException;
import com.iqser.red.service.redaction.v1.server.exception.RedactionException;
import com.iqser.red.service.redaction.v1.server.redaction.service.*;
import com.iqser.red.service.redaction.v1.server.segmentation.PdfSegmentationService;
import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
import com.iqser.red.service.redaction.v1.server.visualization.service.PdfVisualisationService;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
import java.io.ByteArrayOutputStream;
import java.io.IOException;
import org.apache.pdfbox.pdmodel.PDDocument;
import org.springframework.web.bind.annotation.PathVariable;
import org.springframework.web.bind.annotation.RequestBody;
import org.springframework.web.bind.annotation.RestController;
import java.io.ByteArrayOutputStream;
import java.io.IOException;
import java.util.stream.Collectors;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactions;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.dossier.file.FileType;
import com.iqser.red.service.redaction.v1.model.RedactionLog;
import com.iqser.red.service.redaction.v1.model.RedactionRequest;
import com.iqser.red.service.redaction.v1.model.RedactionResult;
import com.iqser.red.service.redaction.v1.resources.RedactionResource;
import com.iqser.red.service.redaction.v1.server.classification.model.Document;
import com.iqser.red.service.redaction.v1.server.classification.model.Page;
import com.iqser.red.service.redaction.v1.server.exception.RedactionException;
import com.iqser.red.service.redaction.v1.server.redaction.service.DroolsExecutionService;
import com.iqser.red.service.redaction.v1.server.redaction.service.ManualRedactionSurroundingTextService;
import com.iqser.red.service.redaction.v1.server.redaction.service.RedactionLogMergeService;
import com.iqser.red.service.redaction.v1.server.segmentation.PdfSegmentationService;
import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
import com.iqser.red.service.redaction.v1.server.visualization.service.PdfVisualisationService;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
@Slf4j
@RestController
@@ -5,7 +5,6 @@ import org.springframework.beans.BeanUtils;
import com.dslplatform.json.CompiledJson;
import com.dslplatform.json.JsonAttribute;
import com.fasterxml.jackson.annotation.JsonAlias;
import com.fasterxml.jackson.annotation.JsonIgnore;
import lombok.AllArgsConstructor;
@@ -22,22 +21,20 @@ import lombok.SneakyThrows;
public class RedTextPosition {
private String textMatrix;
private float[] position;
@JsonIgnore
private int rotation;
private float y;
@JsonIgnore
private float pageHeight;
@JsonIgnore
private float pageWidth;
private String unicode;
@JsonAlias("xdirAdj")
@JsonAttribute(alternativeNames = {"xdirAdj"})
private float XDirAdj;
@JsonAlias("ydirAdj")
@JsonAttribute(alternativeNames = {"ydirAdj"})
private float YDirAdj;
private float width;
private float heightDir;
private float widthDirAdj;
@JsonIgnore
private float dir;
// not used in reanalysis
@@ -66,18 +63,37 @@ public class RedTextPosition {
pos.setTextMatrix(textPosition.getTextMatrix().toString());
var position = new float[4];
position[0] = textPosition.getXDirAdj();
position[1] = textPosition.getYDirAdj();
position[2] = textPosition.getWidthDirAdj();
position[3] = textPosition.getHeightDir();
pos.setPosition(position);
return pos;
}
@JsonAlias("xdirAdj")
@JsonAttribute(alternativeNames = {"xdirAdj"})
public void setXDirAdj(float XDirAdj) {this.XDirAdj = XDirAdj;}
@JsonIgnore
public float getXDirAdj(){
return position[0];
}
@JsonIgnore
public float getYDirAdj(){
return position[1];
}
@JsonAlias("ydirAdj")
@JsonAttribute(alternativeNames = {"ydirAdj"})
public void setYDirAdj(float YDirAdj) {this.YDirAdj = YDirAdj;}
@JsonIgnore
public float getWidthDirAdj(){
return position[2];
}
@JsonIgnore
public float getHeightDir(){
return position[3];
}
}
@@ -31,8 +31,10 @@ public class TextPositionSequence implements CharSequence {
private int page;
private List<RedTextPosition> textPositions = new ArrayList<>();
private float x1;
private float x2;
private float dir;
private int rotation;
private float pageHeight;
private float pageWidth;
public TextPositionSequence(int page) {
@@ -41,7 +43,7 @@ public class TextPositionSequence implements CharSequence {
}
public static TextPositionSequence fromData(List<RedTextPosition> textPositions, int page) {
public TextPositionSequence fromData(List<RedTextPosition> textPositions, int page) {
var textPositionSequence = new TextPositionSequence();
textPositionSequence.textPositions = textPositions;
@@ -55,6 +57,10 @@ public class TextPositionSequence implements CharSequence {
this.textPositions = textPositions.stream().map(RedTextPosition::fromTextPosition).collect(Collectors.toList());
this.page = page;
this.dir = textPositions.get(0).getDir();
this.rotation = textPositions.get(0).getRotation();
this.pageHeight = textPositions.get(0).getPageHeight();
this.pageWidth = textPositions.get(0).getPageWidth();
}
@@ -85,7 +91,15 @@ public class TextPositionSequence implements CharSequence {
@Override
public TextPositionSequence subSequence(int start, int end) {
return fromData(textPositions.subList(start, end), page);
var textPositionSequence = new TextPositionSequence();
textPositionSequence.textPositions = textPositions.subList(start, end);
textPositionSequence.page = page;
textPositionSequence.dir = dir;
textPositionSequence.rotation = rotation;
textPositionSequence.pageHeight = pageHeight;
textPositionSequence.pageWidth = pageWidth;
return textPositionSequence;
}
@@ -106,15 +120,26 @@ public class TextPositionSequence implements CharSequence {
}
public void add(RedTextPosition textPosition) {
public void add(TextPositionSequence textPositionSequence, RedTextPosition textPosition) {
this.textPositions.add(textPosition);
this.page = textPositionSequence.getPage();
this.dir = textPositionSequence.getDir();
this.rotation = textPositionSequence.getRotation();
this.pageHeight = textPositionSequence.getPageHeight();
this.pageWidth = textPositionSequence.getPageWidth();
}
public void add(TextPosition textPosition) {
this.textPositions.add(RedTextPosition.fromTextPosition(textPosition));
this.dir = textPositions.get(0).getDir();
this.rotation = textPositions.get(0).getRotation();
this.pageHeight = textPositions.get(0).getPageHeight();
this.pageWidth = textPositions.get(0).getPageWidth();
}
@@ -122,7 +147,7 @@ public class TextPositionSequence implements CharSequence {
@JsonAttribute(ignore = true)
public float getX1() {
if (textPositions.get(0).getRotation() == 90) {
if (rotation == 90) {
return textPositions.get(0).getYDirAdj() - getTextHeight();
} else {
return textPositions.get(0).getXDirAdj();
@@ -134,10 +159,11 @@ public class TextPositionSequence implements CharSequence {
@JsonAttribute(ignore = true)
public float getX2() {
if (textPositions.get(0).getRotation() == 90) {
if (rotation == 90) {
return textPositions.get(0).getYDirAdj();
} else {
return textPositions.get(textPositions.size() - 1).getXDirAdj() + textPositions.get(textPositions.size() - 1).getWidth() + 1;
return textPositions.get(textPositions.size() - 1)
.getXDirAdj() + textPositions.get(textPositions.size() - 1).getWidthDirAdj() + 1;
}
}
@@ -146,15 +172,7 @@ public class TextPositionSequence implements CharSequence {
@JsonAttribute(ignore = true)
public float getRotationAdjustedY() {
return textPositions.get(0).getY();
}
@JsonIgnore
@JsonAttribute(ignore = true)
public float getRotationAdjustedX() {
return textPositions.get(0).getXDirAdj();
return textPositions.get(0).getYDirAdj();
}
@@ -162,10 +180,10 @@ public class TextPositionSequence implements CharSequence {
@JsonAttribute(ignore = true)
public float getY1() {
if (textPositions.get(0).getRotation() == 90) {
if (rotation == 90) {
return textPositions.get(0).getXDirAdj();
} else {
return textPositions.get(0).getPageHeight() - textPositions.get(0).getYDirAdj();
return pageHeight - textPositions.get(0).getYDirAdj();
}
}
@@ -174,10 +192,10 @@ public class TextPositionSequence implements CharSequence {
@JsonAttribute(ignore = true)
public float getY2() {
if (textPositions.get(0).getRotation() == 90) {
if (rotation == 90) {
return textPositions.get(textPositions.size() - 1).getXDirAdj() + getTextHeight() - 2;
} else {
return textPositions.get(0).getPageHeight() - textPositions.get(0).getYDirAdj() + getTextHeight();
return pageHeight - textPositions.get(0).getYDirAdj() + getTextHeight();
}
}
@@ -249,19 +267,11 @@ public class TextPositionSequence implements CharSequence {
}
@JsonIgnore
@JsonAttribute(ignore = true)
public int getRotation() {
return textPositions.get(0).getRotation();
}
@JsonIgnore
@JsonAttribute(ignore = true)
public Rectangle getRectangle() {
log.debug("Page: '{}', Word: '{}', Rotation: '{}', textRotation {}", page, this, textPositions.get(0).getRotation(), textPositions.get(0).getDir());
log.debug("Page: '{}', Word: '{}', Rotation: '{}', textRotation {}", page, toString(), rotation, dir);
float height = getTextHeight();
@@ -270,113 +280,132 @@ public class TextPositionSequence implements CharSequence {
float posYInit;
float posYEnd;
if (textPositions.get(0).getRotation() == 0 && textPositions.get(0).getDir() == 90f) {
if (rotation == 0 && dir == 90f) {
posYInit = getX1();
posYEnd = getX2() + textPositions.get(0).getWidthDirAdj() - textPositions.get(textPositions.size() - 1).getWidthDirAdj() - 3;
posYEnd = getX2() + textPositions.get(0).getWidthDirAdj() - textPositions.get(textPositions.size() - 1)
.getWidthDirAdj() - 3;
posXInit = textPositions.get(0).getYDirAdj() + 2;
posXEnd = textPositions.get(textPositions.size() - 1).getYDirAdj() - height;
} else if (textPositions.get(0).getRotation() == 0 && textPositions.get(0).getDir() == 180f) {
} else if (rotation == 0 && dir == 180f) {
posXInit = textPositions.get(0).getPageWidth() - getX1() + 1;
posXEnd = textPositions.get(0).getPageWidth() - getX2() + textPositions.get(0).getWidthDirAdj() - textPositions.get(textPositions.size() - 1).getWidthDirAdj() - 3;
posXInit = pageWidth - getX1() + 1;
posXEnd = pageWidth - getX2() + textPositions.get(0)
.getWidthDirAdj() - textPositions.get(textPositions.size() - 1).getWidthDirAdj() - 3;
posYInit = textPositions.get(0).getYDirAdj() - height + 2;
posYEnd = textPositions.get(textPositions.size() - 1).getYDirAdj() - height + 2;
} else if (textPositions.get(0).getRotation() == 0 && textPositions.get(0).getDir() == 270f) {
} else if (rotation == 0 && dir == 270f) {
posYInit = textPositions.get(0).getPageHeight() - getX1();
posYEnd = textPositions.get(0).getPageHeight() - getX2() - textPositions.get(0).getWidthDirAdj() - textPositions.get(textPositions.size() - 1).getWidthDirAdj() - 3;
posXInit = textPositions.get(0).getPageWidth() - textPositions.get(0).getYDirAdj() - 2;
posXEnd = textPositions.get(0).getPageWidth() - textPositions.get(textPositions.size() - 1).getYDirAdj() + height;
posYInit = pageHeight - getX1();
posYEnd = pageHeight - getX2() - textPositions.get(0)
.getWidthDirAdj() - textPositions.get(textPositions.size() - 1).getWidthDirAdj() - 3;
posXInit = pageWidth - textPositions.get(0).getYDirAdj() - 2;
posXEnd = pageWidth - textPositions.get(textPositions.size() - 1)
.getYDirAdj() + height;
} else if (textPositions.get(0).getRotation() == 90 && textPositions.get(0).getDir() == 0.0f) {
} else if (rotation == 90 && dir == 0.0f) {
posXInit = textPositions.get(textPositions.size() - 1).getXDirAdj() + textPositions.get(textPositions.size() - 1).getHeightDir();
posXInit = textPositions.get(textPositions.size() - 1)
.getXDirAdj() + textPositions.get(textPositions.size() - 1).getHeightDir();
posXEnd = textPositions.get(0).getXDirAdj();
posYInit = textPositions.get(0).getPageHeight() - textPositions.get(0).getYDirAdj() - 2;
posYEnd = textPositions.get(0).getPageHeight() - textPositions.get(textPositions.size() - 1).getYDirAdj() + 2;
posYInit = pageHeight - textPositions.get(0).getYDirAdj() - 2;
posYEnd = pageHeight - textPositions.get(textPositions.size() - 1)
.getYDirAdj() + 2;
} else if (textPositions.get(0).getRotation() == 90 && textPositions.get(0).getDir() == 90.0f) {
} else if (rotation == 90 && dir == 90.0f) {
posXEnd = textPositions.get(0).getYDirAdj() + 2;
posYInit = getY1();
posYEnd = textPositions.get(textPositions.size() - 1).getXDirAdj() - height + 4;
} else if (textPositions.get(0).getRotation() == 90 && textPositions.get(0).getDir() == 180.0f) {
} else if (rotation == 90 && dir == 180.0f) {
posXInit = textPositions.get(0).getPageWidth() - textPositions.get(textPositions.size() - 1).getXDirAdj() - 4;
posXEnd = textPositions.get(0).getPageWidth() - textPositions.get(0).getXDirAdj();
posYInit = textPositions.get(0).getYDirAdj() - 2 - textPositions.get(textPositions.size() - 1).getHeightDir();
posYEnd = textPositions.get(textPositions.size() - 1).getYDirAdj() - textPositions.get(textPositions.size() - 1).getHeightDir();
posXInit = pageWidth - textPositions.get(textPositions.size() - 1)
.getXDirAdj() - 4;
posXEnd = pageWidth - textPositions.get(0).getXDirAdj();
posYInit = textPositions.get(0).getYDirAdj() - 2 - textPositions.get(textPositions.size() - 1)
.getHeightDir();
posYEnd = textPositions.get(textPositions.size() - 1)
.getYDirAdj() - textPositions.get(textPositions.size() - 1).getHeightDir();
} else if (textPositions.get(0).getRotation() == 90 && textPositions.get(0).getDir() == 270.0f) {
} else if (rotation == 90 && dir == 270.0f) {
posXInit = textPositions.get(0).getPageWidth() - getX1();
posXEnd = textPositions.get(0).getPageWidth() - textPositions.get(0).getYDirAdj() - 2;
posYInit = textPositions.get(0).getPageHeight() - getY1();
posYEnd = textPositions.get(0).getPageHeight() - textPositions.get(textPositions.size() - 1).getXDirAdj() - height - 4;
posXInit = pageWidth - getX1();
posXEnd = pageWidth - textPositions.get(0).getYDirAdj() - 2;
posYInit = pageHeight - getY1();
posYEnd = pageHeight - textPositions.get(textPositions.size() - 1)
.getXDirAdj() - height - 4;
} else if (textPositions.get(0).getRotation() == 180 && textPositions.get(0).getDir() == 0f) {
} else if (rotation == 180 && dir == 0f) {
posXEnd = textPositions.get(textPositions.size() - 1).getXDirAdj() + textPositions.get(textPositions.size() - 1).getWidthDirAdj() + 1;
posYInit = textPositions.get(0).getPageHeight() - textPositions.get(0).getYDirAdj() - 2;
posYEnd = textPositions.get(0).getPageHeight() - textPositions.get(textPositions.size() - 1).getYDirAdj() + 2;
posXEnd = textPositions.get(textPositions.size() - 1)
.getXDirAdj() + textPositions.get(textPositions.size() - 1).getWidthDirAdj() + 1;
posYInit = pageHeight - textPositions.get(0).getYDirAdj() - 2;
posYEnd = pageHeight - textPositions.get(textPositions.size() - 1)
.getYDirAdj() + 2;
} else if (textPositions.get(0).getRotation() == 180 && textPositions.get(0).getDir() == 90f) {
} else if (rotation == 180 && dir == 90f) {
posYInit = getX1();
posYEnd = getX2() - 3;
posXInit = textPositions.get(0).getYDirAdj() + 2;
posXEnd = textPositions.get(textPositions.size() - 1).getYDirAdj() - height;
} else if (textPositions.get(0).getRotation() == 180 && textPositions.get(0).getDir() == 180f) {
} else if (rotation == 180 && dir == 180f) {
posXInit = textPositions.get(0).getPageWidth() - getX1() + 1;
posXEnd = textPositions.get(0).getPageWidth() - getX2() + textPositions.get(0).getWidthDirAdj() - textPositions.get(textPositions.size() - 1).getWidthDirAdj() - 3;
posXInit = pageWidth - getX1() + 1;
posXEnd = pageWidth - getX2() + textPositions.get(0)
.getWidthDirAdj() - textPositions.get(textPositions.size() - 1).getWidthDirAdj() - 3;
posYInit = textPositions.get(0).getYDirAdj() - height + 2;
posYEnd = textPositions.get(textPositions.size() - 1).getYDirAdj() - height + 2;
} else if (textPositions.get(0).getRotation() == 180 && textPositions.get(0).getDir() == 270.0f) {
} else if (rotation == 180 && dir == 270.0f) {
posYInit = textPositions.get(0).getPageHeight() - getX1();
posYEnd = textPositions.get(0).getPageHeight() - getX2() - textPositions.get(0).getWidthDirAdj() - textPositions.get(textPositions.size() - 1).getWidthDirAdj();
posXInit = textPositions.get(0).getPageWidth() - textPositions.get(0).getYDirAdj() - 2;
posXEnd = textPositions.get(0).getPageWidth() - textPositions.get(textPositions.size() - 1).getYDirAdj() + height;
posYInit = pageHeight - getX1();
posYEnd = pageHeight - getX2() - textPositions.get(0)
.getWidthDirAdj() - textPositions.get(textPositions.size() - 1).getWidthDirAdj();
posXInit = pageWidth - textPositions.get(0).getYDirAdj() - 2;
posXEnd = pageWidth - textPositions.get(textPositions.size() - 1)
.getYDirAdj() + height;
} else if (textPositions.get(0).getRotation() == 270 && textPositions.get(0).getDir() == 0.0f) {
} else if (rotation == 270 && dir == 0.0f) {
posYInit = textPositions.get(0).getPageHeight() - textPositions.get(0).getYDirAdj() - 2;
posYInit = pageHeight - textPositions.get(0).getYDirAdj() - 2;
posYEnd = posYInit + 1;
posXInit = textPositions.get(0).getXDirAdj();
posXEnd = textPositions.get(textPositions.size() - 1).getXDirAdj() + textPositions.get(textPositions.size() - 1).getWidthDirAdj() + 0.1f;
posXEnd = textPositions.get(textPositions.size() - 1)
.getXDirAdj() + textPositions.get(textPositions.size() - 1).getWidthDirAdj() + 0.1f;
} else if (textPositions.get(0).getRotation() == 270 && textPositions.get(0).getDir() == 90.0f) {
} else if (rotation == 270 && dir == 90.0f) {
posYInit = getX1();
posYEnd = getX2() - height;
posXInit = textPositions.get(0).getYDirAdj() + 2;
posXEnd = textPositions.get(textPositions.size() - 1).getYDirAdj() - height;
} else if (textPositions.get(0).getRotation() == 270 && textPositions.get(0).getDir() == 180.0f) {
} else if (rotation == 270 && dir == 180.0f) {
posXInit = textPositions.get(0).getPageWidth() - getX1() + 1;
posXEnd = textPositions.get(0).getPageWidth() - getX2() - 4;
posXInit = pageWidth - getX1() + 1;
posXEnd = pageWidth - getX2() - 4;
posYInit = textPositions.get(0).getYDirAdj() - height + 2;
posYEnd = textPositions.get(textPositions.size() - 1).getYDirAdj() - height + 2;
} else if (textPositions.get(0).getRotation() == 270 && textPositions.get(0).getDir() == 270.0f) {
} else if (rotation == 270 && dir == 270.0f) {
posYInit = textPositions.get(0).getPageHeight() - getX1();
posYEnd = textPositions.get(0).getPageHeight() - getX2() - height;
posXInit = textPositions.get(0).getPageWidth() - textPositions.get(0).getYDirAdj() - 2;
posXEnd = textPositions.get(0).getPageWidth() - textPositions.get(textPositions.size() - 1).getYDirAdj() + height;
posYInit = pageHeight - getX1();
posYEnd = pageHeight - getX2() - height;
posXInit = pageWidth - textPositions.get(0).getYDirAdj() - 2;
posXEnd = pageWidth - textPositions.get(textPositions.size() - 1)
.getYDirAdj() + height;
} else {
// page rotation = 0 and text direction = 0
posXEnd = textPositions.get(textPositions.size() - 1).getXDirAdj() + textPositions.get(textPositions.size() - 1).getWidthDirAdj() + 1;
posYInit = textPositions.get(0).getPageHeight() - textPositions.get(0).getYDirAdj() - 2;
posYEnd = textPositions.get(0).getPageHeight() - textPositions.get(textPositions.size() - 1).getYDirAdj() + 2;
posXEnd = textPositions.get(textPositions.size() - 1)
.getXDirAdj() + textPositions.get(textPositions.size() - 1).getWidthDirAdj() + 1;
posYInit = pageHeight - textPositions.get(0).getYDirAdj() - 2;
posYEnd = pageHeight - textPositions.get(textPositions.size() - 1)
.getYDirAdj() + 2;
}
var rectangle = new Rectangle(new Point(posXInit, posYInit), posXEnd - posXInit, posYEnd - posYInit + height, page);
@@ -1,19 +1,14 @@
package com.iqser.red.service.redaction.v1.server.redaction.model;
import com.iqser.red.service.redaction.v1.model.Engine;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import lombok.*;
import java.util.ArrayList;
import java.util.HashSet;
import java.util.List;
import java.util.Set;
import com.iqser.red.service.redaction.v1.model.Engine;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.EqualsAndHashCode;
import lombok.NoArgsConstructor;
@Data
@Builder
@NoArgsConstructor
@@ -24,6 +19,7 @@ public class Entity implements ReasonHolder {
private String word;
private String type;
private boolean redaction;
private boolean falsePositive;
private String redactionReason;
private String legalBasis;
private List<EntityPositionSequence> positionSequences = new ArrayList<>();
@@ -100,7 +100,7 @@ public class SearchableText {
.length() - 1, caseInsensitive)) || j == 0 && i != 0 && searchSpace.get(i - 1)
.charAt(searchSpace.get(i - 1).length() - 1, caseInsensitive) != ' ' && searchSpace.get(i)
.charAt(j, caseInsensitive) != ' ') {
partMatch.add(searchSpace.get(i).textPositionAt(j));
partMatch.add(searchSpace.get(i),searchSpace.get(i).textPositionAt(j));
if (!(j == searchSpace.get(i).length() - 1 && searchSpace.get(i)
.charAt(j, caseInsensitive) == '-' && searchChars[counter] != '-')) {
counter++;
@@ -1,23 +1,5 @@
package com.iqser.red.service.redaction.v1.server.redaction.model;
import java.lang.annotation.ElementType;
import java.lang.annotation.Retention;
import java.lang.annotation.RetentionPolicy;
import java.lang.annotation.Target;
import java.util.ArrayList;
import java.util.Collection;
import java.util.Comparator;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.regex.Matcher;
import java.util.regex.Pattern;
import java.util.stream.Collectors;
import org.apache.commons.lang3.StringUtils;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactions;
import com.iqser.red.service.redaction.v1.model.ArgumentType;
import com.iqser.red.service.redaction.v1.model.Engine;
@@ -28,10 +10,19 @@ import com.iqser.red.service.redaction.v1.server.redaction.utils.EntitySearchUti
import com.iqser.red.service.redaction.v1.server.redaction.utils.FindEntityDetails;
import com.iqser.red.service.redaction.v1.server.redaction.utils.Patterns;
import com.iqser.red.service.redaction.v1.server.redaction.utils.SearchImplementation;
import lombok.Builder;
import lombok.Data;
import lombok.extern.slf4j.Slf4j;
import org.apache.commons.lang3.StringUtils;
import java.lang.annotation.ElementType;
import java.lang.annotation.Retention;
import java.lang.annotation.RetentionPolicy;
import java.lang.annotation.Target;
import java.util.*;
import java.util.regex.Matcher;
import java.util.regex.Pattern;
import java.util.stream.Collectors;
@Data
@Slf4j
@@ -78,7 +69,7 @@ public class Section {
@SuppressWarnings("unused")
@WhenCondition
@ThenAction
public void addAiEntities(@Argument(ArgumentType.TYPE) String type, @Argument(ArgumentType.TYPE) String asType) {
Set<Entity> entitiesOfType = nerEntities.stream()
@@ -87,6 +78,7 @@ public class Section {
List<String> values = entitiesOfType.stream().map(Entity::getWord).collect(Collectors.toList());
Set<Entity> found = EntitySearchUtils.findEntities(searchText, new SearchImplementation(values, dictionary.isCaseInsensitiveDictionary(asType)), dictionary.getType(asType), new FindEntityDetails(asType, headline, sectionNumber, false, false, Engine.NER, EntityType.RECOMMENDATION));
EntitySearchUtils.clearAndFindPositions(found, searchableText, dictionary, manualRedactions);
found = found.stream().filter(f -> !f.isFalsePositive()).collect(Collectors.toSet());
Set<Entity> finalResult = new HashSet<>();
@@ -112,7 +104,7 @@ public class Section {
@SuppressWarnings("unused")
@WhenCondition
@ThenAction
public void combineAiTypes(@Argument(ArgumentType.TYPE) String startType,
@Argument(ArgumentType.TYPE) String combineTypes,
@Argument(ArgumentType.INTEGER) int maxDistanceBetween,
@@ -886,13 +878,11 @@ public class Section {
}
});
return EntitySearchUtils.clearAndFindPositions(found, searchableText, dictionary, manualRedactions);
var cleared = EntitySearchUtils.clearAndFindPositions(found, searchableText, dictionary, manualRedactions);
return cleared.stream().filter(f -> !f.isFalsePositive()).collect(Collectors.toSet());
}
private void redact(String type, int ruleNumber, String reason, String legalBasis, boolean redaction) {
entities.forEach(entity -> {
@@ -1,18 +1,5 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.stream.Collectors;
import java.util.stream.Stream;
import org.apache.commons.lang3.StringUtils;
import org.kie.api.runtime.KieContainer;
import org.springframework.stereotype.Service;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.AnnotationStatus;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactions;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.entitymapped.IdRemoval;
@@ -22,24 +9,21 @@ import com.iqser.red.service.redaction.v1.model.Engine;
import com.iqser.red.service.redaction.v1.server.classification.model.SectionText;
import com.iqser.red.service.redaction.v1.server.client.model.NerEntities;
import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryModel;
import com.iqser.red.service.redaction.v1.server.redaction.model.Entities;
import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
import com.iqser.red.service.redaction.v1.server.redaction.model.EntityPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.model.EntityType;
import com.iqser.red.service.redaction.v1.server.redaction.model.Image;
import com.iqser.red.service.redaction.v1.server.redaction.model.PageEntities;
import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
import com.iqser.red.service.redaction.v1.server.redaction.model.Section;
import com.iqser.red.service.redaction.v1.server.redaction.model.SectionSearchableTextPair;
import com.iqser.red.service.redaction.v1.server.redaction.model.*;
import com.iqser.red.service.redaction.v1.server.redaction.utils.EntitySearchUtils;
import com.iqser.red.service.redaction.v1.server.redaction.utils.FindEntityDetails;
import com.iqser.red.service.redaction.v1.server.redaction.utils.IdBuilder;
import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
import io.micrometer.core.annotation.Timed;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
import org.apache.commons.lang3.StringUtils;
import org.kie.api.runtime.KieContainer;
import org.springframework.stereotype.Service;
import java.util.*;
import java.util.stream.Collectors;
import java.util.stream.Stream;
@Slf4j
@Service
@@ -51,7 +35,6 @@ public class EntityRedactionService {
private final SurroundingWordsService surroundingWordsService;
public PageEntities findEntities(Dictionary dictionary, List<SectionText> sectionTexts, KieContainer kieContainer,
AnalyzeRequest analyzeRequest, NerEntities nerEntities) {
@@ -262,7 +245,8 @@ public class EntityRedactionService {
nerFound.addAll(getNerValues(sectionNumber, nerEntities, cellStarts, headline));
}
return new Entities(EntitySearchUtils.clearAndFindPositions(found, searchableText, dictionary, manualRedactions), nerFound);
var cleared = EntitySearchUtils.clearAndFindPositions(found, searchableText, dictionary, manualRedactions);
return new Entities(cleared.stream().filter(e -> !e.isFalsePositive()).collect(Collectors.toSet()), nerFound);
}
@@ -5,7 +5,6 @@ import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.stream.Collectors;
import org.apache.commons.collections4.CollectionUtils;
import org.springframework.stereotype.Service;
@@ -13,7 +12,6 @@ import org.springframework.stereotype.Service;
import com.iqser.red.service.redaction.v1.model.Point;
import com.iqser.red.service.redaction.v1.model.Rectangle;
import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
import com.iqser.red.service.redaction.v1.server.parsing.model.RedTextPosition;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
import com.iqser.red.service.redaction.v1.server.redaction.model.EntityPositionSequence;
@@ -114,10 +112,7 @@ public class RedactionLogCreatorService {
redactionLogEntry.setId(entityPositionSequence.getId());
if (CollectionUtils.isNotEmpty(entityPositionSequence.getSequences())) {
List<Rectangle> rectanglesPerLine = getRectanglesPerLine(entityPositionSequence.getSequences()
.stream()
.flatMap(seq -> seq.getTextPositions().stream())
.collect(Collectors.toList()), page);
List<Rectangle> rectanglesPerLine = getRectanglesPerLine(entityPositionSequence.getSequences());
redactionLogEntry.getPositions().addAll(rectanglesPerLine);
@@ -134,38 +129,43 @@ public class RedactionLogCreatorService {
}
private List<Rectangle> getRectanglesPerLine(List<RedTextPosition> textPositions, int page) {
private List<Rectangle> getRectanglesPerLine(List<TextPositionSequence> textPositionSequences) {
List<Rectangle> rectangles = new ArrayList<>();
if (textPositions.size() == 1) {
rectangles.add(TextPositionSequence.fromData(textPositions, page).getRectangle());
} else {
float x = textPositions.get(0).getXDirAdj();
float y = textPositions.get(0).getYDirAdj();
float width = textPositions.get(0).getWidthDirAdj();
float height = textPositions.get(0).getHeightDir();
int startIndex = 0;
for (int i = 1; i < textPositions.size(); i++) {
float xDirAdj = textPositions.get(i).getXDirAdj();
float yDirAdj = textPositions.get(i).getYDirAdj();
float widthDir = textPositions.get(i).getWidthDirAdj();
float heightDir = textPositions.get(i).getHeightDir();
if (textPositionSequences.size() == 1) {
rectangles.add(textPositionSequences.get(0).getRectangle());
return rectangles;
}
if (!(isCharInSameLine(y, yDirAdj, height, heightDir) && isCharClose(x, xDirAdj, width))) {
rectangles.add(TextPositionSequence.fromData(textPositions.subList(startIndex, i), page)
.getRectangle());
y = yDirAdj;
width = widthDir;
height = heightDir;
startIndex = i;
}
x = xDirAdj;
TextPositionSequence combinedSequence = new TextPositionSequence();
for (int i = 0; i < textPositionSequences.size(); i++) {
if(combinedSequence.getTextPositions().isEmpty()){
combinedSequence = textPositionSequences.get(i);
continue;
}
if (startIndex != textPositions.size()) {
rectangles.add(TextPositionSequence.fromData(textPositions.subList(startIndex, textPositions.size()), page)
.getRectangle());
float lastSeqX = textPositionSequences.get(i - 1).getTextPositions().get(textPositionSequences.get(i - 1).getTextPositions().size() - 1).getXDirAdj();
float lastSeqY = textPositionSequences.get(i - 1).getTextPositions().get(textPositionSequences.get(i - 1).getTextPositions().size() - 1).getYDirAdj();
float lastSeqWidth = textPositionSequences.get(i - 1).getTextPositions().get(textPositionSequences.get(i - 1).getTextPositions().size() - 1).getWidthDirAdj();
float lastSeqHeight = textPositionSequences.get(i - 1).getTextPositions().get(textPositionSequences.get(i - 1).getTextPositions().size() - 1).getHeightDir();
float currentSeqX = textPositionSequences.get(i).getTextPositions().get(0).getXDirAdj();
float currentSeqY = textPositionSequences.get(i).getTextPositions().get(0).getYDirAdj();
float currentSeqHeight = textPositionSequences.get(i).getTextPositions().get(0).getHeightDir();
if (isCharInSameLine(lastSeqY, currentSeqY, lastSeqHeight, currentSeqHeight) && isCharClose(lastSeqX, currentSeqX, lastSeqWidth)) {
combinedSequence.getTextPositions().addAll(textPositionSequences.get(i).getTextPositions());
} else {
rectangles.add(combinedSequence.getRectangle());
combinedSequence = textPositionSequences.get(i);
}
}
if(!combinedSequence.getTextPositions().isEmpty()) {
rectangles.add(combinedSequence.getRectangle());
}
return rectangles;
@@ -207,7 +207,8 @@ public class RedactionLogCreatorService {
.redacted(entity.isRedaction())
.isHint(isHint(entity.getType(), dossierTemplateId))
.isRecommendation(entity.getEntityType().equals(EntityType.RECOMMENDATION))
.isFalsePositive(entity.getEntityType().equals(EntityType.FALSE_POSITIVE) || entity.getEntityType().equals(EntityType.FALSE_RECOMMENDATION))
.isFalsePositive(entity.getEntityType().equals(EntityType.FALSE_POSITIVE) || entity.getEntityType()
.equals(EntityType.FALSE_RECOMMENDATION))
.section(entity.getHeadline())
.sectionNumber(entity.getSectionNumber())
.matchedRule(entity.getMatchedRule())
@@ -1,28 +1,15 @@
package com.iqser.red.service.redaction.v1.server.redaction.utils;
import java.util.ArrayList;
import java.util.Comparator;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Optional;
import java.util.Set;
import java.util.stream.Collectors;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.AnnotationStatus;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactions;
import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryModel;
import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
import com.iqser.red.service.redaction.v1.server.redaction.model.EntityPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.model.EntityType;
import com.iqser.red.service.redaction.v1.server.redaction.model.Image;
import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
import com.iqser.red.service.redaction.v1.server.redaction.model.*;
import lombok.experimental.UtilityClass;
import lombok.extern.slf4j.Slf4j;
import java.util.*;
import java.util.stream.Collectors;
@Slf4j
@UtilityClass
@SuppressWarnings("PMD")
@@ -39,12 +26,10 @@ public class EntitySearchUtils {
if (details.getEntityType() == EntityType.RECOMMENDATION) {
Set<Entity> falseRecommendations = find(inputString, type.getFalseRecommendationsSearch(), details.withEntityType(EntityType.FALSE_RECOMMENDATION));
removeFalsePositives(found, falseRecommendations);
found.addAll(falseRecommendations);
markFalsePositives(found, falseRecommendations);
} else {
Set<Entity> falsePositives = find(inputString, type.getFalsePositiveSearch(), details.withEntityType(EntityType.FALSE_POSITIVE));
removeFalsePositives(found, falsePositives);
found.addAll(falsePositives);
markFalsePositives(found, falsePositives);
}
return found;
@@ -93,7 +78,7 @@ public class EntitySearchUtils {
}
}
if (manualRedactions != null && manualRedactions.getResizeRedactions() != null && !manualRedactions.getResizeRedactions().isEmpty()){
if (manualRedactions != null && manualRedactions.getResizeRedactions() != null && !manualRedactions.getResizeRedactions().isEmpty()) {
applyResizeRedactions(entities, manualRedactions);
}
@@ -131,7 +116,11 @@ public class EntitySearchUtils {
}
public void removeFalsePositives(Set<Entity> entities, Set<Entity> falsePositives) {
public void markFalsePositives(Set<Entity> entities, Set<Entity> falsePositives) {
if (entities.size() == 2) {
log.info("asd");
}
List<Entity> wordsToRemove = new ArrayList<>();
for (Entity word : falsePositives) {
@@ -142,8 +131,12 @@ public class EntitySearchUtils {
}
}
}
wordsToRemove.forEach(entities::remove);
entities.removeAll(falsePositives);
wordsToRemove.forEach(e -> e.setFalsePositive(true));
for (var entity : entities) {
if (falsePositives.contains(entity)) {
entity.setFalsePositive(true);
}
}
}
@@ -152,13 +145,22 @@ public class EntitySearchUtils {
List<Entity> wordsToRemove = new ArrayList<>();
for (Entity word : entities) {
for (Entity inner : entities) {
// // skip cross-type false positives
// if(word.getEntityType() == EntityType.FALSE_POSITIVE && inner.getEntityType() == EntityType.ENTITY && !inner.getType().equals(word.getType())){
// continue;
// }
// // skip cross-type false reccommendations
// if(word.getEntityType() == EntityType.FALSE_RECOMMENDATION && inner.getEntityType() == EntityType.RECOMMENDATION && !inner.getType().equals(word.getType())){
// continue;
// }
if (inner.getWord().length() < word.getWord()
.length() && inner.getStart() >= word.getStart() && inner.getEnd() <= word.getEnd() && word != inner && word.getSectionNumber() == inner.getSectionNumber()) {
if (word.getEntityType().equals(EntityType.RECOMMENDATION) && inner.getEntityType().equals(EntityType.ENTITY)) {
wordsToRemove.add(word);
} else if(!(inner.getEntityType() == EntityType.FALSE_RECOMMENDATION && word.getEntityType() == EntityType.ENTITY ||
} else if (!(inner.getEntityType() == EntityType.FALSE_RECOMMENDATION && word.getEntityType() == EntityType.ENTITY ||
inner.getEntityType() == EntityType.ENTITY && word.getEntityType() == EntityType.FALSE_RECOMMENDATION)) {
if(inner.isResized()){
if (inner.isResized()) {
wordsToRemove.add(word);
} else {
wordsToRemove.add(inner);
@@ -1,8 +1,9 @@
package com.iqser.red.service.redaction.v1.server.storage;
import com.dslplatform.json.DslJson;
import com.dslplatform.json.runtime.Settings;
import com.fasterxml.jackson.databind.ObjectMapper;
import java.io.InputStream;
import org.springframework.stereotype.Service;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.dossier.file.FileType;
import com.iqser.red.service.redaction.v1.model.ImportedRedactions;
import com.iqser.red.service.redaction.v1.model.RedactionLog;
@@ -12,16 +13,12 @@ import com.iqser.red.service.redaction.v1.server.client.model.NerEntities;
import com.iqser.red.service.redaction.v1.server.exception.NotFoundException;
import com.iqser.red.storage.commons.exception.StorageObjectDoesNotExist;
import com.iqser.red.storage.commons.service.StorageService;
import io.micrometer.core.annotation.Timed;
import lombok.Getter;
import lombok.RequiredArgsConstructor;
import lombok.SneakyThrows;
import lombok.extern.slf4j.Slf4j;
import org.springframework.core.io.InputStreamResource;
import org.springframework.stereotype.Service;
import java.io.IOException;
import java.io.InputStream;
@Slf4j
@Service
@@ -13,13 +13,20 @@ import lombok.NoArgsConstructor;
@NoArgsConstructor
public abstract class AbstractTextContainer {
@JsonIgnore
protected float minX;
@JsonIgnore
protected float maxX;
@JsonIgnore
protected float minY;
@JsonIgnore
protected float maxY;
@JsonIgnore
protected String classification;
@JsonIgnore
protected int page;
@JsonIgnore
private Orientation orientation = Orientation.NONE;
public abstract String getText();
@@ -1,14 +1,5 @@
package com.iqser.red.service.redaction.v1.server;
import com.fasterxml.jackson.databind.DeserializationFeature;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.fasterxml.jackson.datatype.jsr310.JavaTimeModule;
import com.iqser.red.storage.commons.exception.StorageObjectDoesNotExist;
import com.iqser.red.storage.commons.service.StorageService;
import lombok.SneakyThrows;
import org.apache.commons.io.IOUtils;
import org.springframework.core.io.InputStreamResource;
import java.io.File;
import java.io.FileInputStream;
import java.io.FileOutputStream;
@@ -19,6 +10,16 @@ import java.util.List;
import java.util.Map;
import java.util.stream.Collectors;
import org.apache.commons.io.IOUtils;
import org.springframework.core.io.InputStreamResource;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.iqser.red.commons.jackson.ObjectMapperFactory;
import com.iqser.red.storage.commons.exception.StorageObjectDoesNotExist;
import com.iqser.red.storage.commons.service.StorageService;
import lombok.SneakyThrows;
public class FileSystemBackedStorageService implements StorageService {
private final Map<String, File> dataMap = new HashMap<>();
@@ -62,11 +63,8 @@ public class FileSystemBackedStorageService implements StorageService {
}
private ObjectMapper getMapper() {
var objectMapper = new ObjectMapper();
objectMapper.configure(DeserializationFeature.FAIL_ON_UNKNOWN_PROPERTIES, false);
objectMapper.registerModule(new JavaTimeModule());
objectMapper.findAndRegisterModules();
return objectMapper;
return ObjectMapperFactory.create();
}
@Override
@@ -113,12 +113,13 @@ public class RulesTest {
private static final String IMPORTED_REDACTION = "imported_redaction";
private static final String PII = "PII";
private static final String RESOURCES_PATH = "src/test/resources/";
private static final String REDACTION_LOG_PATH = "RedactionLog/";
private static final String REDACTION_LOG_RESOURCES_PATH = RESOURCES_PATH + REDACTION_LOG_PATH;
private final static String TEST_DOSSIER_TEMPLATE_ID = "123";
private final static String TEST_DOSSIER_ID = "123";
private String TEST_FILE_ID = "123";
private int counter = 0;
private int fileSize = 0;
private final Map<String, List<String>> dictionary = new HashMap<>();
private final Map<String, List<String>> dossierDictionary = new HashMap<>();
private final Map<String, List<String>> falsePositive = new HashMap<>();
@@ -177,7 +178,9 @@ public class RulesTest {
.hexColor("#ffe187")
.isHint(hintTypeMap.get(DOSSIER_REDACTIONS))
.isCaseInsensitive(caseInSensitiveMap.get(DOSSIER_REDACTIONS))
.isRecommendation(recommendationTypeMap.get(DOSSIER_REDACTIONS)).rank(rankTypeMap.get(DOSSIER_REDACTIONS)).build()));
.isRecommendation(recommendationTypeMap.get(DOSSIER_REDACTIONS))
.rank(rankTypeMap.get(DOSSIER_REDACTIONS))
.build()));
mockDictionaryCalls(null);
mockDictionaryCalls(0L);
@@ -205,6 +208,7 @@ public class RulesTest {
public void generateRedactionLogForOneFile() {
String fileName = "files/Compounds/31 A14111B - EU AIR3 - MCP Section 1 - Identity of the plant protection product.pdf";
fileSize = 1;
generateAndSaveRedactionLog(fileName, true);
}
@@ -215,28 +219,24 @@ public class RulesTest {
* Please commit generated files, if not the following tests will fail
*/
@Test
@Ignore// TODO PSC REMOVE
public void generateRedactionLogForAllFiles() {
Set<String> files = getFileNames(new HashSet<>(), FileSystems.getDefault().getPath(RESOURCES_PATH));
System.out.println("Will generate RedactionLog for " + files.size() + " files.");
fileSize = files.size();
files.forEach(this::generateAndSaveRedactionLog);
}
/**
* Analyses file and compares its RedactionLog with saved one from here: REDACTION_LOG_PATH.
* If RedactionLog Json does not exist, test will fail.
* Test is ignored, because it's for manual tests.
*/
@Ignore
@Test
public void analyseFileAndCompareRedactionLog() {
String fileName = "files/Compounds/31 A14111B - EU AIR3 - MCP Section 1 - Identity of the plant protection product.pdf";
String fileName = "files/RulesTest/SYNGENTA_EFSA_sanitisation_GFL_v1_withHighlights.pdf";
fileSize = 1;
analyseFileAndCompareRedactionLog(fileName);
}
@@ -251,35 +251,28 @@ public class RulesTest {
Set<String> files = getFileNames(new HashSet<>(), FileSystems.getDefault().getPath(RESOURCES_PATH));
System.out.println("Will analyse " + files.size() + " files and compare its RedactionLogs.");
System.out.println("files: " + files);
fileSize = files.size();
files.forEach(this::analyseFileAndCompareRedactionLog);
}
@Test// TODO PSC REMOVE
@Ignore
public void foo() {
String fileName = "oo-home/local-working-dir/3080193/RED-REDACTIONSERVICENIGHT0-JOB1/redaction-service-v1/redaction-service-server-v1/src/test/resources/files/Compounds/26 A8637C - EU AIR3 - LCP Section 10 - Ecotoxicological studies on the plant protection product - Reference list.pdf";
loadSavedRedactionLog(fileName);
}
private void generateAndSaveRedactionLog(String fileName) {
generateAndSaveRedactionLog(fileName, false);
}
@SneakyThrows
private void generateAndSaveRedactionLog(String fileName, boolean force) {
counter++;
if (!force && doesRedactionLogExist(fileName)) {
System.out.println("Skip generating RedactionLog as Json for " + fileName + " because it already exists.");
System.out.println("(" + counter + "/" + fileSize + ") Skip generating RedactionLog as Json for " + fileName + " because it already exists.");
} else {
generateTestFileId(fileName);
System.out.println("Generate RedactionLog as Json for " + fileName + " with fileId " + TEST_FILE_ID);
System.out.println("(" + counter + "/" + fileSize + ") Generate RedactionLog as Json for " + fileName + " with fileId " + TEST_FILE_ID);
loadNerForTest();
@@ -298,8 +291,9 @@ public class RulesTest {
@SneakyThrows
public void analyseFileAndCompareRedactionLog(String fileName) {
counter++;
generateTestFileId(fileName);
System.out.println("Analyse " + fileName + " with fileId " + TEST_FILE_ID + " and compare it with its saved RedactionLog");
System.out.println("(" + counter + "/" + fileSize + ") Analyse " + fileName + " with fileId " + TEST_FILE_ID + " and compare it with its saved RedactionLog");
RedactionLog savedRedactionLog = loadSavedRedactionLog(fileName);
@@ -319,7 +313,7 @@ public class RulesTest {
assertThat(redactionLog.getRulesVersion()).isEqualTo(savedRedactionLog.getRulesVersion());
assertThat(redactionLog.getLegalBasisVersion()).isEqualTo(savedRedactionLog.getLegalBasisVersion());
assertThat(redactionLog.getRedactionLogEntry().size()).isEqualTo(savedRedactionLog.getRedactionLogEntry().size());
assertThat(redactionLog.getRedactionLogEntry().stream().filter(r -> !r.isFalsePositive()).collect(Collectors.toSet()).size()).isEqualTo(savedRedactionLog.getRedactionLogEntry().stream().filter(r -> !r.isFalsePositive()).collect(Collectors.toSet()).size());
assertThat(redactionLog.getLegalBasis().size()).isEqualTo(savedRedactionLog.getLegalBasis().size());
for (RedactionLogLegalBasis redactionLegalBasis : redactionLog.getLegalBasis()) {
@@ -407,7 +401,7 @@ public class RulesTest {
assertThat(savedManualChange).isPresent();
}
assertThat(savedRedactionLogEntry.get().getEngines()).containsExactly(redactionLogEntry.getEngines().toArray(new Engine[0]));
assertThat(savedRedactionLogEntry.get().getEngines()).containsExactlyInAnyOrder(redactionLogEntry.getEngines().toArray(new Engine[0]));
assertThat(savedRedactionLogEntry.get().getReference()).containsAll(redactionLogEntry.getReference());
assertThat(savedRedactionLogEntry.get().getImportedRedactionIntersections()).containsAll(redactionLogEntry.getImportedRedactionIntersections());
@@ -460,27 +454,53 @@ public class RulesTest {
@SneakyThrows
private RedactionLog loadSavedRedactionLog(String pdfFileName) {
System.out.println("XXXXXXXXX pdfFileName: " + pdfFileName);
File pdfFile = new File(pdfFileName);
String directory = pdfFile.getParentFile().getPath();
if (StringUtils.contains(directory, RESOURCES_PATH) || StringUtils.contains(directory, StringUtils.replace(RESOURCES_PATH, "/", "\\"))) {
directory = directory + "/" + REDACTION_LOG_PATH;
String directory = cleanPath(pdfFile.getParentFile().getPath());
if (StringUtils.contains(directory, RESOURCES_PATH)) {
if (!StringUtils.endsWith(directory, "/")) {
directory = directory + "/";
}
directory = directory + REDACTION_LOG_PATH;
} else {
if (StringUtils.startsWith(directory, "/")) {
directory = StringUtils.substring(directory, 1);
}
directory = REDACTION_LOG_RESOURCES_PATH + directory;
}
String fileName = StringUtils.replace(pdfFile.getName(), ".pdf", ".json");
File file = new File(directory, fileName);
System.out.println("XXXXXXXXX directory: " + directory);
System.out.println("XXXXXXXXX fileName: " + fileName);
assertThat(file).exists();
return objectMapper.readValue(file, RedactionLog.class);
}
@SneakyThrows
private Set<String> getFileNames(Set<String> fileNames, Path dir) {
try (DirectoryStream<Path> stream = Files.newDirectoryStream(dir)) {
for (Path path : stream) {
if (path.toFile().isDirectory()) {
getFileNames(fileNames, path);
} else if (StringUtils.endsWith(path.toAbsolutePath().toString(), ".pdf")) {
String absolutePath = cleanPath(path.toAbsolutePath().toString());
int pos = StringUtils.indexOf(absolutePath, RESOURCES_PATH) + RESOURCES_PATH.length();
fileNames.add(StringUtils.substring(absolutePath, pos));
}
}
}
return fileNames;
}
private String cleanPath(String path) {
return StringUtils.replace(path, "\\", "/");
}
@SneakyThrows
private void loadNerForTest() {
@@ -619,30 +639,6 @@ public class RulesTest {
}
@SneakyThrows
private Set<String> getFileNames(Set<String> fileNames, Path dir) {
try (DirectoryStream<Path> stream = Files.newDirectoryStream(dir)) {
for (Path path : stream) {
if (path.toFile().isDirectory()) {
getFileNames(fileNames, path);
} else if (StringUtils.endsWith(path.toAbsolutePath().toString(), ".pdf")) {
String absolutePath = path.toAbsolutePath().toString();
System.out.println("absolutePath: " + absolutePath);
int pos = StringUtils.indexOf(absolutePath, StringUtils.replace(RESOURCES_PATH, "/", "\\")) + 18;
pos = StringUtils.indexOf(absolutePath, RESOURCES_PATH) + 18;
System.out.println("pos: " + pos);
fileNames.add(StringUtils.substring(absolutePath, pos));
System.out.println("Added: " + StringUtils.substring(absolutePath, pos));
}
}
}
return fileNames;
}
private Type getDictionaryResponse(String type, boolean isDossierDictionary) {
return Type.builder()
@@ -1,14 +1,15 @@
package com.iqser.red.service.redaction.v1.server.annotate;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.Comment;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.dossier.file.FileType;
import com.iqser.red.service.redaction.v1.model.Rectangle;
import com.iqser.red.service.redaction.v1.model.*;
import com.iqser.red.service.redaction.v1.server.exception.RedactionException;
import com.iqser.red.service.redaction.v1.server.redaction.service.DictionaryService;
import com.iqser.red.service.redaction.v1.server.redaction.service.RedactionLogMergeService;
import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
import lombok.RequiredArgsConstructor;
import java.awt.Color;
import java.io.ByteArrayOutputStream;
import java.io.IOException;
import java.util.ArrayList;
import java.util.GregorianCalendar;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.stream.Collectors;
import org.apache.pdfbox.io.MemoryUsageSetting;
import org.apache.pdfbox.pdmodel.PDDocument;
import org.apache.pdfbox.pdmodel.PDPage;
@@ -22,12 +23,21 @@ import org.apache.pdfbox.pdmodel.interactive.annotation.PDAnnotationText;
import org.apache.pdfbox.pdmodel.interactive.annotation.PDAnnotationTextMarkup;
import org.springframework.stereotype.Service;
import java.awt.*;
import java.io.ByteArrayOutputStream;
import java.io.IOException;
import java.util.List;
import java.util.*;
import java.util.stream.Collectors;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.dossier.file.FileType;
import com.iqser.red.service.redaction.v1.model.CellRectangle;
import com.iqser.red.service.redaction.v1.model.Rectangle;
import com.iqser.red.service.redaction.v1.model.RedactionLog;
import com.iqser.red.service.redaction.v1.model.RedactionLogComment;
import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
import com.iqser.red.service.redaction.v1.model.RedactionRequest;
import com.iqser.red.service.redaction.v1.model.SectionGrid;
import com.iqser.red.service.redaction.v1.model.SectionRectangle;
import com.iqser.red.service.redaction.v1.server.exception.RedactionException;
import com.iqser.red.service.redaction.v1.server.redaction.service.DictionaryService;
import com.iqser.red.service.redaction.v1.server.redaction.service.RedactionLogMergeService;
import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
import lombok.RequiredArgsConstructor;
@Service
@RequiredArgsConstructor
@@ -5,9 +5,11 @@ import com.fasterxml.jackson.datatype.jsr310.JavaTimeModule;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.dossier.file.FileType;
import com.iqser.red.service.redaction.v1.model.AnalyzeRequest;
import com.iqser.red.service.redaction.v1.model.MessageType;
import com.iqser.red.service.redaction.v1.server.annotate.AnnotationService;
import lombok.SneakyThrows;
import lombok.extern.slf4j.Slf4j;
import org.junit.Test;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.core.io.ClassPathResource;
import java.time.OffsetDateTime;
@@ -19,6 +21,9 @@ public class AnalyseFileRealDataIntegrationTest extends LiveDataIntegrationTest
public static final String FILE_NAME = "test-file";
@Autowired
private AnnotationService annotationService;
@Test
@SneakyThrows
public void testFile() {
@@ -81,7 +86,19 @@ public class AnalyseFileRealDataIntegrationTest extends LiveDataIntegrationTest
redactionMessageReceiver.receiveAnalyzeRequest(in, false);
// var log = redactionStorageService.getRedactionLog("dossierId","fileId");
// var redactionLog = redactionStorageService.getRedactionLog("dossierId","fileId");
// redactionLog.getRedactionLogEntry().forEach(entry ->{
// log.info("Entry {}", entry);
// });
//
// var annotated = annotationService.annotate(AnnotateRequest.builder().fileId("fileId").dossierId("dossierId").build());
// annotated.getDocument();
//
// File tempFile = File.createTempFile("annotated",".pdf");
// IOUtils.write(annotated.getDocument(), new FileOutputStream(tempFile));
// log.warn("File saved to: {}",tempFile.getAbsolutePath());
// Runtime.getRuntime().exec("open "+tempFile.getAbsolutePath());
}
}
@@ -1,17 +1,21 @@
package com.iqser.red.service.redaction.v1.server.realdata;
import static org.assertj.core.api.AssertionsForClassTypes.assertThat;
import static org.mockito.ArgumentMatchers.any;
import static org.mockito.ArgumentMatchers.anyBoolean;
import static org.mockito.ArgumentMatchers.anyString;
import static org.mockito.ArgumentMatchers.nullable;
import static org.mockito.Mockito.when;
import java.util.ArrayList;
import java.util.List;
import java.util.Objects;
import java.util.stream.Collectors;
import com.fasterxml.jackson.core.type.TypeReference;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.iqser.red.service.persistence.service.v1.api.model.common.JSONPrimitive;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.configuration.Colors;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.type.DictionaryEntry;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.type.Type;
import com.iqser.red.service.redaction.v1.server.Application;
import com.iqser.red.service.redaction.v1.server.FileSystemBackedStorageService;
import com.iqser.red.service.redaction.v1.server.client.*;
import com.iqser.red.service.redaction.v1.server.queue.RedactionMessageReceiver;
import com.iqser.red.service.redaction.v1.server.redaction.service.DictionaryService;
import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
import com.iqser.red.storage.commons.StorageAutoConfiguration;
import com.iqser.red.storage.commons.service.StorageService;
import lombok.SneakyThrows;
import org.apache.commons.io.IOUtils;
import org.junit.Before;
import org.junit.Test;
@@ -30,27 +34,14 @@ import org.springframework.core.io.Resource;
import org.springframework.core.io.support.ResourcePatternResolver;
import org.springframework.test.context.junit4.SpringRunner;
import com.fasterxml.jackson.core.type.TypeReference;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.iqser.red.service.persistence.service.v1.api.model.common.JSONPrimitive;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.configuration.Colors;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.type.DictionaryEntry;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.type.Type;
import com.iqser.red.service.redaction.v1.server.Application;
import com.iqser.red.service.redaction.v1.server.FileSystemBackedStorageService;
import com.iqser.red.service.redaction.v1.server.client.DictionaryClient;
import com.iqser.red.service.redaction.v1.server.client.EntityRecognitionClient;
import com.iqser.red.service.redaction.v1.server.client.FileStatusProcessingUpdateClient;
import com.iqser.red.service.redaction.v1.server.client.LegalBasisClient;
import com.iqser.red.service.redaction.v1.server.client.RulesClient;
import com.iqser.red.service.redaction.v1.server.queue.RedactionMessageReceiver;
import com.iqser.red.service.redaction.v1.server.redaction.service.DictionaryService;
import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
import com.iqser.red.storage.commons.StorageAutoConfiguration;
import com.iqser.red.storage.commons.service.StorageService;
import java.util.ArrayList;
import java.util.List;
import java.util.Objects;
import java.util.stream.Collectors;
import lombok.SneakyThrows;
import static org.assertj.core.api.AssertionsForClassTypes.assertThat;
import static org.mockito.ArgumentMatchers.*;
import static org.mockito.Mockito.when;
@RunWith(SpringRunner.class)
@SpringBootTest(classes = Application.class, webEnvironment = SpringBootTest.WebEnvironment.RANDOM_PORT)
@@ -143,6 +134,7 @@ public class LiveDataIntegrationTest {
if (found.isPresent()) {
var type = types.stream().filter(t -> t.getType().equalsIgnoreCase(typeName)).findFirst().get();
type.setEntries(getEntries(typeName, type.getTypeId()));
type.setFalsePositiveEntries(getFalsePositiveEntries(typeName, type.getTypeId()));
return type;
} else {
@@ -196,7 +188,22 @@ public class LiveDataIntegrationTest {
Resource[] dictionaryResources = resourcePatternResolver.getResources("classpath:" + BASE_DIR + EFSA_SANITISATION_GFL_V1 + "dictionaries/**");
for (var resource : dictionaryResources) {
if (Objects.requireNonNull(resource.getFilename()).contains(typeName)) {
if (Objects.requireNonNull(resource.getFilename()).contains(typeName) && !resource.getFilename().contains("false_positive")) {
List<String> lines = IOUtils.readLines(resource.getInputStream());
return lines.stream().map(l -> new DictionaryEntry(0, l, 0L, false, typeId)).collect(Collectors.toList());
}
}
return new ArrayList<>();
}
@SneakyThrows
private List<DictionaryEntry> getFalsePositiveEntries(String typeName, String typeId) {
Resource[] dictionaryResources = resourcePatternResolver.getResources("classpath:" + BASE_DIR + EFSA_SANITISATION_GFL_V1 + "dictionaries/**");
for (var resource : dictionaryResources) {
if (Objects.requireNonNull(resource.getFilename()).contains(typeName) && resource.getFilename().contains("false_positive")) {
List<String> lines = IOUtils.readLines(resource.getInputStream());
return lines.stream().map(l -> new DictionaryEntry(0, l, 0L, false, typeId)).collect(Collectors.toList());
@@ -1,15 +1,12 @@
package com.iqser.red.service.redaction.v1.server.redaction.utils;
import org.apache.commons.lang3.StringUtils;
import org.junit.Test;
import java.util.ArrayList;
import java.util.List;
import java.util.Set;
import java.util.regex.Matcher;
import java.util.regex.Pattern;
import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
import org.apache.commons.lang3.StringUtils;
import org.junit.Test;
public class RegExPatternTest {
@@ -1 +0,0 @@
{"analysisVersion":1,"analysisNumber":0,"redactionLogEntry":[],"legalBasis":[],"dictionaryVersion":0,"dossierDictionaryVersion":0,"rulesVersion":0,"legalBasisVersion":0}
File diff suppressed because one or more lines are too long
File diff suppressed because one or more lines are too long