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85d73dae47 | ||
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1792eb554e |
@@ -51,7 +51,7 @@ public class PlanSpec {
|
||||
private PlanPermissions createPlanPermission(PlanIdentifier planIdentifier) {
|
||||
Permissions permission = new Permissions()
|
||||
.userPermissions("atlbamboo", PermissionType.EDIT, PermissionType.VIEW, PermissionType.ADMIN, PermissionType.CLONE, PermissionType.BUILD)
|
||||
.groupPermissions("gin4", PermissionType.EDIT, PermissionType.VIEW, PermissionType.CLONE, PermissionType.BUILD)
|
||||
.groupPermissions("red-backend", PermissionType.EDIT, PermissionType.VIEW, PermissionType.CLONE, PermissionType.BUILD)
|
||||
.loggedInUserPermissions(PermissionType.VIEW)
|
||||
.anonymousUserPermissionView();
|
||||
return new PlanPermissions(planIdentifier.getProjectKey(), planIdentifier.getPlanKey()).permissions(permission);
|
||||
@@ -134,4 +134,4 @@ public class PlanSpec {
|
||||
.whenInactiveInRepositoryAfterDays(14))
|
||||
.notificationForCommitters());
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@@ -7,3 +7,12 @@ ENV PLATFORM_JAR ${PLATFORM_JAR}
|
||||
ENV USES_ELASTICSEARCH false
|
||||
|
||||
COPY ["${PLATFORM_JAR}", "/"]
|
||||
|
||||
RUN apt-get update \
|
||||
&& DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends \
|
||||
wget cabextract xfonts-utils fonts-liberation \
|
||||
&& rm -rf /var/lib/apt/lists/*
|
||||
|
||||
RUN curl http://ftp.br.debian.org/debian/pool/contrib/m/msttcorefonts/ttf-mscorefonts-installer_3.7_all.deb -o /tmp/ttf-mscorefonts-installer_3.7_all.deb \
|
||||
&& dpkg -i /tmp/ttf-mscorefonts-installer_3.7_all.deb \
|
||||
&& rm /tmp/ttf-mscorefonts-installer_3.7_all.deb \
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||||
|
||||
@@ -32,7 +32,7 @@
|
||||
<dependency>
|
||||
<groupId>com.iqser.red</groupId>
|
||||
<artifactId>platform-commons-dependency</artifactId>
|
||||
<version>1.1.0</version>
|
||||
<version>1.1.7</version>
|
||||
<scope>import</scope>
|
||||
<type>pom</type>
|
||||
</dependency>
|
||||
|
||||
+16
@@ -0,0 +1,16 @@
|
||||
package com.iqser.red.service.redaction.v1.model;
|
||||
|
||||
import lombok.AllArgsConstructor;
|
||||
import lombok.Data;
|
||||
import lombok.NoArgsConstructor;
|
||||
|
||||
@Data
|
||||
@AllArgsConstructor
|
||||
@NoArgsConstructor
|
||||
public class CellRectangle {
|
||||
|
||||
private Point topLeft;
|
||||
private float width;
|
||||
private float height;
|
||||
|
||||
}
|
||||
+13
-10
@@ -1,29 +1,32 @@
|
||||
package com.iqser.red.service.redaction.v1.model;
|
||||
|
||||
import java.util.List;
|
||||
|
||||
import lombok.AllArgsConstructor;
|
||||
import lombok.Data;
|
||||
import lombok.NoArgsConstructor;
|
||||
|
||||
import java.util.List;
|
||||
|
||||
@Data
|
||||
@AllArgsConstructor
|
||||
@NoArgsConstructor
|
||||
public class RedactionLog {
|
||||
|
||||
public RedactionLog(List<RedactionLogEntry> redactionLogEntry, long dictionaryVersion, long rulesVersion) {
|
||||
private List<RedactionLogEntry> redactionLogEntry;
|
||||
|
||||
private long dictionaryVersion = -1;
|
||||
private long rulesVersion = -1;
|
||||
|
||||
private String ruleSetId;
|
||||
private String filename;
|
||||
|
||||
|
||||
public RedactionLog(List<RedactionLogEntry> redactionLogEntry, long dictionaryVersion, long rulesVersion, String ruleSetId) {
|
||||
|
||||
this.redactionLogEntry = redactionLogEntry;
|
||||
this.dictionaryVersion = dictionaryVersion;
|
||||
this.rulesVersion = rulesVersion;
|
||||
this.ruleSetId = ruleSetId;
|
||||
}
|
||||
|
||||
private List<RedactionLogEntry> redactionLogEntry;
|
||||
|
||||
private long dictionaryVersion = -1;
|
||||
|
||||
private long rulesVersion = -1;
|
||||
|
||||
private String filename;
|
||||
|
||||
}
|
||||
|
||||
+6
@@ -18,9 +18,11 @@ public class RedactionLogEntry {
|
||||
private String type;
|
||||
private String value;
|
||||
private String reason;
|
||||
private int matchedRule;
|
||||
private String legalBasis;
|
||||
private boolean redacted;
|
||||
private boolean isHint;
|
||||
private boolean isRecommendation;
|
||||
private String section;
|
||||
private float[] color;
|
||||
|
||||
@@ -30,5 +32,9 @@ public class RedactionLogEntry {
|
||||
private boolean manual;
|
||||
private Status status;
|
||||
private ManualRedactionType manualRedactionType;
|
||||
private boolean isDictionaryEntry;
|
||||
|
||||
private String textBefore;
|
||||
private String textAfter;
|
||||
|
||||
}
|
||||
|
||||
+1
@@ -12,6 +12,7 @@ import lombok.NoArgsConstructor;
|
||||
public class RedactionRequest {
|
||||
|
||||
private byte[] document;
|
||||
private String ruleSetId;
|
||||
private boolean flatRedaction;
|
||||
private ManualRedactions manualRedactions;
|
||||
}
|
||||
|
||||
+1
@@ -14,5 +14,6 @@ public class RedactionResult {
|
||||
private byte[] document;
|
||||
private int numberOfPages;
|
||||
private RedactionLog redactionLog;
|
||||
private SectionGrid sectionGrid;
|
||||
|
||||
}
|
||||
|
||||
+18
@@ -0,0 +1,18 @@
|
||||
package com.iqser.red.service.redaction.v1.model;
|
||||
|
||||
import java.util.HashMap;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
|
||||
import lombok.AllArgsConstructor;
|
||||
import lombok.Data;
|
||||
import lombok.NoArgsConstructor;
|
||||
|
||||
@Data
|
||||
@AllArgsConstructor
|
||||
@NoArgsConstructor
|
||||
public class SectionGrid {
|
||||
|
||||
private Map<Integer, List<SectionRectangle>> rectanglesPerPage = new HashMap<>();
|
||||
|
||||
}
|
||||
+33
@@ -0,0 +1,33 @@
|
||||
package com.iqser.red.service.redaction.v1.model;
|
||||
|
||||
import java.util.List;
|
||||
|
||||
import lombok.AllArgsConstructor;
|
||||
import lombok.Data;
|
||||
import lombok.NoArgsConstructor;
|
||||
import lombok.NonNull;
|
||||
import lombok.RequiredArgsConstructor;
|
||||
|
||||
@Data
|
||||
@AllArgsConstructor
|
||||
@NoArgsConstructor
|
||||
@RequiredArgsConstructor
|
||||
public class SectionRectangle {
|
||||
|
||||
@NonNull
|
||||
private Point topLeft;
|
||||
|
||||
@NonNull
|
||||
private float width;
|
||||
|
||||
@NonNull
|
||||
private float height;
|
||||
|
||||
@NonNull
|
||||
private int part;
|
||||
|
||||
@NonNull
|
||||
private int numberOfParts;
|
||||
|
||||
private List<CellRectangle> tableCells;
|
||||
}
|
||||
+12
-6
@@ -1,16 +1,19 @@
|
||||
package com.iqser.red.service.redaction.v1.resources;
|
||||
|
||||
import org.springframework.http.MediaType;
|
||||
import org.springframework.web.bind.annotation.PostMapping;
|
||||
import org.springframework.web.bind.annotation.RequestBody;
|
||||
|
||||
import com.iqser.red.service.redaction.v1.model.RedactionRequest;
|
||||
import com.iqser.red.service.redaction.v1.model.RedactionResult;
|
||||
import org.springframework.http.MediaType;
|
||||
import org.springframework.web.bind.annotation.PathVariable;
|
||||
import org.springframework.web.bind.annotation.PostMapping;
|
||||
import org.springframework.web.bind.annotation.RequestBody;
|
||||
|
||||
public interface RedactionResource {
|
||||
|
||||
String SERVICE_NAME = "redaction-service-v1";
|
||||
|
||||
String RULE_SET_PARAMETER_NAME = "ruleSetId";
|
||||
String RULE_SET_PATH_VARIABLE = "/{" + RULE_SET_PARAMETER_NAME + "}";
|
||||
|
||||
@PostMapping(value = "/redact", produces = MediaType.APPLICATION_JSON_VALUE, consumes = MediaType.APPLICATION_JSON_VALUE)
|
||||
RedactionResult redact(@RequestBody RedactionRequest redactionRequest);
|
||||
|
||||
@@ -23,7 +26,10 @@ public interface RedactionResource {
|
||||
@PostMapping(value = "/debug/htmlTables", produces = MediaType.APPLICATION_JSON_VALUE, consumes = MediaType.APPLICATION_JSON_VALUE)
|
||||
RedactionResult htmlTables(@RequestBody RedactionRequest redactionRequest);
|
||||
|
||||
@PostMapping(value = "/rules/update", consumes = MediaType.APPLICATION_JSON_VALUE)
|
||||
void updateRules(@RequestBody String rules);
|
||||
@PostMapping(value = "/rules/update"+RULE_SET_PATH_VARIABLE, consumes = MediaType.APPLICATION_JSON_VALUE)
|
||||
void updateRules(@PathVariable(RULE_SET_PARAMETER_NAME) String ruleSetId);
|
||||
|
||||
@PostMapping(value = "/rules/test", consumes = MediaType.APPLICATION_JSON_VALUE)
|
||||
void testRules(@RequestBody String rules);
|
||||
|
||||
}
|
||||
@@ -20,7 +20,7 @@
|
||||
<dependency>
|
||||
<groupId>com.iqser.red.service</groupId>
|
||||
<artifactId>configuration-service-api-v1</artifactId>
|
||||
<version>1.2.0</version>
|
||||
<version>2.0.0</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.drools</groupId>
|
||||
|
||||
+3
-48
@@ -1,16 +1,8 @@
|
||||
package com.iqser.red.service.redaction.v1.server;
|
||||
|
||||
import java.io.ByteArrayInputStream;
|
||||
import java.io.InputStream;
|
||||
import java.nio.charset.StandardCharsets;
|
||||
|
||||
import org.apache.commons.lang3.StringUtils;
|
||||
import org.kie.api.KieServices;
|
||||
import org.kie.api.builder.KieBuilder;
|
||||
import org.kie.api.builder.KieFileSystem;
|
||||
import org.kie.api.builder.KieModule;
|
||||
import org.kie.api.runtime.KieContainer;
|
||||
import org.springframework.beans.factory.annotation.Autowired;
|
||||
import com.iqser.red.commons.spring.DefaultWebMvcConfiguration;
|
||||
import com.iqser.red.service.redaction.v1.server.client.RulesClient;
|
||||
import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
|
||||
import org.springframework.boot.SpringApplication;
|
||||
import org.springframework.boot.actuate.autoconfigure.metrics.web.servlet.WebMvcMetricsAutoConfiguration;
|
||||
import org.springframework.boot.actuate.autoconfigure.security.servlet.ManagementWebSecurityAutoConfiguration;
|
||||
@@ -18,54 +10,17 @@ import org.springframework.boot.autoconfigure.SpringBootApplication;
|
||||
import org.springframework.boot.autoconfigure.security.servlet.SecurityAutoConfiguration;
|
||||
import org.springframework.boot.context.properties.EnableConfigurationProperties;
|
||||
import org.springframework.cloud.openfeign.EnableFeignClients;
|
||||
import org.springframework.context.annotation.Bean;
|
||||
import org.springframework.context.annotation.Import;
|
||||
|
||||
import com.iqser.red.commons.spring.DefaultWebMvcConfiguration;
|
||||
import com.iqser.red.service.configuration.v1.api.model.RulesResponse;
|
||||
import com.iqser.red.service.redaction.v1.server.client.RulesClient;
|
||||
import com.iqser.red.service.redaction.v1.server.exception.RulesValidationException;
|
||||
import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
|
||||
|
||||
@Import({DefaultWebMvcConfiguration.class})
|
||||
@EnableFeignClients(basePackageClasses = RulesClient.class)
|
||||
@EnableConfigurationProperties(RedactionServiceSettings.class)
|
||||
@SpringBootApplication(exclude = {SecurityAutoConfiguration.class, ManagementWebSecurityAutoConfiguration.class, WebMvcMetricsAutoConfiguration.class})
|
||||
public class Application {
|
||||
|
||||
@Autowired
|
||||
private RulesClient rulesClient;
|
||||
|
||||
|
||||
public static void main(String[] args) {
|
||||
|
||||
SpringApplication.run(Application.class, args);
|
||||
}
|
||||
|
||||
|
||||
@Bean
|
||||
public KieContainer kieContainer() {
|
||||
|
||||
try {
|
||||
KieServices kieServices = KieServices.Factory.get();
|
||||
|
||||
KieFileSystem kieFileSystem = kieServices.newKieFileSystem();
|
||||
RulesResponse rules = rulesClient.getRules();
|
||||
if (StringUtils.isEmpty(rules.getRules())) {
|
||||
throw new RuntimeException("Rules cannot be empty.");
|
||||
}
|
||||
InputStream input = new ByteArrayInputStream(rules.getRules().getBytes(StandardCharsets.UTF_8));
|
||||
kieFileSystem.write("src/main/resources/drools/rules.drl", kieServices.getResources()
|
||||
.newInputStreamResource(input));
|
||||
KieBuilder kieBuilder = kieServices.newKieBuilder(kieFileSystem);
|
||||
kieBuilder.buildAll();
|
||||
KieModule kieModule = kieBuilder.getKieModule();
|
||||
|
||||
return kieServices.newKieContainer(kieModule.getReleaseId());
|
||||
} catch (Exception e) {
|
||||
throw new RulesValidationException("Could not update rules: " + e.getMessage(), e);
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
+4
@@ -6,6 +6,7 @@ import java.util.List;
|
||||
import java.util.Map;
|
||||
|
||||
import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
|
||||
import com.iqser.red.service.redaction.v1.model.SectionGrid;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
|
||||
|
||||
import lombok.Data;
|
||||
@@ -25,4 +26,7 @@ public class Document {
|
||||
private boolean headlines;
|
||||
|
||||
private List<RedactionLogEntry> redactionLogEntities = new ArrayList<>();
|
||||
private SectionGrid sectionGrid = new SectionGrid();
|
||||
private long dictionaryVersion;
|
||||
private long rulesVersion;
|
||||
}
|
||||
|
||||
-6
@@ -97,13 +97,7 @@ public class TextBlock extends AbstractTextContainer {
|
||||
this.maxY = Math.max(y1, y2);
|
||||
}
|
||||
|
||||
public float getHeight() {
|
||||
return maxY - minY;
|
||||
}
|
||||
|
||||
public float getWidth() {
|
||||
return maxX - minX;
|
||||
}
|
||||
|
||||
@Override
|
||||
public String toString() {
|
||||
|
||||
+44
-18
@@ -5,15 +5,17 @@ import java.util.regex.Pattern;
|
||||
|
||||
import org.springframework.stereotype.Service;
|
||||
|
||||
import com.iqser.red.service.redaction.v1.server.classification.utils.PositionUtils;
|
||||
import com.iqser.red.service.redaction.v1.server.classification.model.Document;
|
||||
import com.iqser.red.service.redaction.v1.server.classification.model.Page;
|
||||
import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
|
||||
import com.iqser.red.service.redaction.v1.server.classification.utils.PositionUtils;
|
||||
import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
|
||||
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Rectangle;
|
||||
|
||||
import lombok.RequiredArgsConstructor;
|
||||
import lombok.extern.slf4j.Slf4j;
|
||||
|
||||
@Slf4j
|
||||
@Service
|
||||
@RequiredArgsConstructor
|
||||
public class ClassificationService {
|
||||
@@ -28,7 +30,7 @@ public class ClassificationService {
|
||||
|
||||
List<Float> headlineFontSizes = document.getFontSizeCounter().getHighterThanMostPopular();
|
||||
|
||||
System.out.println(document.getFontSizeCounter().getCountPerValue());
|
||||
log.debug("Document FontSize counters are: {}", document.getFontSizeCounter().getCountPerValue());
|
||||
|
||||
for (Page page : document.getPages()) {
|
||||
Rectangle btf = page.isLandscape() ? landscapeBodyTextFrame : bodyTextFrame;
|
||||
@@ -39,6 +41,7 @@ public class ClassificationService {
|
||||
|
||||
|
||||
public void classifyPage(Rectangle bodyTextFrame, Page page, Document document, List<Float> headlineFontSizes) {
|
||||
|
||||
for (AbstractTextContainer textBlock : page.getTextBlocks()) {
|
||||
if (textBlock instanceof TextBlock) {
|
||||
classifyBlock((TextBlock) textBlock, bodyTextFrame, page, document, headlineFontSizes);
|
||||
@@ -47,24 +50,33 @@ public class ClassificationService {
|
||||
}
|
||||
|
||||
|
||||
public void classifyBlock(TextBlock textBlock, Rectangle bodyTextFrame, Page page, Document document, List<Float> headlineFontSizes) {
|
||||
public void classifyBlock(TextBlock textBlock, Rectangle bodyTextFrame, Page page, Document document,
|
||||
List<Float> headlineFontSizes) {
|
||||
|
||||
if (document.getFontSizeCounter().getMostPopular() == null) {
|
||||
// TODO Figure out why this happens.
|
||||
return;
|
||||
}
|
||||
if (PositionUtils.isOverBodyTextFrame(bodyTextFrame, textBlock, page.isRotated()) && (document.getFontSizeCounter().getMostPopular() == null || textBlock.getHighestFontSize() <= document.getFontSizeCounter().getMostPopular())) {
|
||||
if (PositionUtils.isOverBodyTextFrame(bodyTextFrame, textBlock, page.isRotated()) && (document.getFontSizeCounter()
|
||||
.getMostPopular() == null || textBlock.getHighestFontSize() <= document.getFontSizeCounter()
|
||||
.getMostPopular())) {
|
||||
textBlock.setClassification("Header");
|
||||
|
||||
} else if (PositionUtils.isUnderBodyTextFrame(bodyTextFrame, textBlock) && (document.getFontSizeCounter().getMostPopular() == null || textBlock.getHighestFontSize() <= document.getFontSizeCounter().getMostPopular())) {
|
||||
} else if (PositionUtils.isUnderBodyTextFrame(bodyTextFrame, textBlock) && (document.getFontSizeCounter()
|
||||
.getMostPopular() == null || textBlock.getHighestFontSize() <= document.getFontSizeCounter()
|
||||
.getMostPopular())) {
|
||||
textBlock.setClassification("Footer");
|
||||
} else if (page.getPageNumber() == 1
|
||||
&& (!PositionUtils.isTouchingUnderBodyTextFrame(bodyTextFrame, textBlock)
|
||||
&& PositionUtils.getHeightDifferenceBetweenChunkWordAndDocumentWord(textBlock, document.getTextHeightCounter().getMostPopular()) > 2.5 && textBlock.getHighestFontSize() > document.getFontSizeCounter().getMostPopular() || page.getTextBlocks().size() == 1)) {
|
||||
} else if (page.getPageNumber() == 1 && (!PositionUtils.isTouchingUnderBodyTextFrame(bodyTextFrame, textBlock) && PositionUtils
|
||||
.getHeightDifferenceBetweenChunkWordAndDocumentWord(textBlock, document.getTextHeightCounter()
|
||||
.getMostPopular()) > 2.5 && textBlock.getHighestFontSize() > document.getFontSizeCounter()
|
||||
.getMostPopular() || page.getTextBlocks().size() == 1)) {
|
||||
if (!Pattern.matches("[0-9]+", textBlock.toString())) {
|
||||
textBlock.setClassification("Title");
|
||||
}
|
||||
}
|
||||
else if (PositionUtils.isWithinBodyTextFrame(bodyTextFrame, textBlock) && textBlock.getMostPopularWordFontSize() > document.getFontSizeCounter().getMostPopular() && PositionUtils.getApproxLineCount(textBlock) < 4.9 && textBlock.getMostPopularWordStyle().equals("bold")) {
|
||||
} else if (PositionUtils.isWithinBodyTextFrame(bodyTextFrame, textBlock) && textBlock.getMostPopularWordFontSize() > document
|
||||
.getFontSizeCounter()
|
||||
.getMostPopular() && PositionUtils.getApproxLineCount(textBlock) < 4.9 && textBlock.getMostPopularWordStyle()
|
||||
.equals("bold")) {
|
||||
|
||||
for (int i = 1; i <= headlineFontSizes.size(); i++) {
|
||||
if (textBlock.getMostPopularWordFontSize() == headlineFontSizes.get(i - 1)) {
|
||||
@@ -72,20 +84,34 @@ public class ClassificationService {
|
||||
document.setHeadlines(true);
|
||||
}
|
||||
}
|
||||
}else if (!textBlock.getText().startsWith("Table ") && !textBlock.getText().startsWith("Figure ") && PositionUtils.isWithinBodyTextFrame(bodyTextFrame, textBlock) && textBlock.getMostPopularWordFontSize() == document.getFontSizeCounter().getMostPopular() && textBlock.getMostPopularWordStyle().equals("bold") && !document.getFontStyleCounter().getMostPopular().equals("bold") && PositionUtils.getApproxLineCount(textBlock) < 2.9) {
|
||||
} else if (!textBlock.getText().startsWith("Table ") && !textBlock.getText()
|
||||
.startsWith("Figure ") && PositionUtils.isWithinBodyTextFrame(bodyTextFrame, textBlock) && textBlock.getMostPopularWordStyle()
|
||||
.equals("bold") && !document.getFontStyleCounter()
|
||||
.getMostPopular()
|
||||
.equals("bold") && PositionUtils.getApproxLineCount(textBlock) < 2.9) {
|
||||
textBlock.setClassification("H " + (headlineFontSizes.size() + 1));
|
||||
document.setHeadlines(true);
|
||||
}
|
||||
else if (PositionUtils.isWithinBodyTextFrame(bodyTextFrame, textBlock) && textBlock.getMostPopularWordFontSize() == document.getFontSizeCounter().getMostPopular() && textBlock.getMostPopularWordStyle().equals("bold") && !document.getFontStyleCounter().getMostPopular().equals("bold")) {
|
||||
} else if (PositionUtils.isWithinBodyTextFrame(bodyTextFrame, textBlock) && textBlock.getMostPopularWordFontSize() == document
|
||||
.getFontSizeCounter()
|
||||
.getMostPopular() && textBlock.getMostPopularWordStyle()
|
||||
.equals("bold") && !document.getFontStyleCounter().getMostPopular().equals("bold")) {
|
||||
textBlock.setClassification("TextBlock Bold");
|
||||
}
|
||||
else if (PositionUtils.isWithinBodyTextFrame(bodyTextFrame, textBlock) && textBlock.getMostPopularWordFont().equals(document.getFontCounter().getMostPopular()) && textBlock.getMostPopularWordStyle().equals(document.getFontStyleCounter().getMostPopular()) && textBlock.getMostPopularWordFontSize() == document.getFontSizeCounter().getMostPopular()) {
|
||||
} else if (PositionUtils.isWithinBodyTextFrame(bodyTextFrame, textBlock) && textBlock.getMostPopularWordFont()
|
||||
.equals(document.getFontCounter().getMostPopular()) && textBlock.getMostPopularWordStyle()
|
||||
.equals(document.getFontStyleCounter()
|
||||
.getMostPopular()) && textBlock.getMostPopularWordFontSize() == document.getFontSizeCounter()
|
||||
.getMostPopular()) {
|
||||
textBlock.setClassification("TextBlock");
|
||||
}
|
||||
else if (PositionUtils.isWithinBodyTextFrame(bodyTextFrame, textBlock) && textBlock.getMostPopularWordFontSize() == document.getFontSizeCounter().getMostPopular() && textBlock.getMostPopularWordStyle().equals("italic") && !document.getFontStyleCounter().getMostPopular().equals("italic") && PositionUtils.getApproxLineCount(textBlock) < 2.9) {
|
||||
} else if (PositionUtils.isWithinBodyTextFrame(bodyTextFrame, textBlock) && textBlock.getMostPopularWordFontSize() == document
|
||||
.getFontSizeCounter()
|
||||
.getMostPopular() && textBlock.getMostPopularWordStyle()
|
||||
.equals("italic") && !document.getFontStyleCounter()
|
||||
.getMostPopular()
|
||||
.equals("italic") && PositionUtils.getApproxLineCount(textBlock) < 2.9) {
|
||||
textBlock.setClassification("TextBlock Italic");
|
||||
} else if (PositionUtils.isWithinBodyTextFrame(bodyTextFrame, textBlock)){
|
||||
} else if (PositionUtils.isWithinBodyTextFrame(bodyTextFrame, textBlock)) {
|
||||
textBlock.setClassification("TextBlock Unknown");
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
+2
-4
@@ -1,10 +1,8 @@
|
||||
package com.iqser.red.service.redaction.v1.server.client;
|
||||
|
||||
import com.iqser.red.service.configuration.v1.api.resource.DictionaryResource;
|
||||
import org.springframework.cloud.openfeign.FeignClient;
|
||||
|
||||
import com.iqser.red.service.configuration.v1.api.resource.DictionaryResource;
|
||||
import com.iqser.red.service.configuration.v1.api.resource.RulesResource;
|
||||
|
||||
@FeignClient(name = "DictionaryResource", url = "http://" + RulesResource.SERVICE_NAME + ":8080")
|
||||
@FeignClient(name = "DictionaryResource", url = "${configuration-service.url}")
|
||||
public interface DictionaryClient extends DictionaryResource {
|
||||
}
|
||||
+2
-3
@@ -1,9 +1,8 @@
|
||||
package com.iqser.red.service.redaction.v1.server.client;
|
||||
|
||||
import com.iqser.red.service.configuration.v1.api.resource.RulesResource;
|
||||
import org.springframework.cloud.openfeign.FeignClient;
|
||||
|
||||
import com.iqser.red.service.configuration.v1.api.resource.RulesResource;
|
||||
|
||||
@FeignClient(name = RulesResource.SERVICE_NAME, url = "http://" + RulesResource.SERVICE_NAME + ":8080")
|
||||
@FeignClient(name = RulesResource.SERVICE_NAME, url = "${configuration-service.url}")
|
||||
public interface RulesClient extends RulesResource {
|
||||
}
|
||||
+50
-30
@@ -1,34 +1,34 @@
|
||||
package com.iqser.red.service.redaction.v1.server.controller;
|
||||
|
||||
import java.io.ByteArrayInputStream;
|
||||
import java.io.ByteArrayOutputStream;
|
||||
import java.io.IOException;
|
||||
import java.util.List;
|
||||
|
||||
import org.apache.pdfbox.pdmodel.PDDocument;
|
||||
import org.springframework.web.bind.annotation.RequestBody;
|
||||
import org.springframework.web.bind.annotation.RestController;
|
||||
|
||||
import com.iqser.red.service.redaction.v1.model.RedactionLog;
|
||||
import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
|
||||
import com.iqser.red.service.redaction.v1.model.RedactionRequest;
|
||||
import com.iqser.red.service.redaction.v1.model.RedactionResult;
|
||||
import com.iqser.red.service.redaction.v1.model.SectionGrid;
|
||||
import com.iqser.red.service.redaction.v1.resources.RedactionResource;
|
||||
import com.iqser.red.service.redaction.v1.server.classification.model.Document;
|
||||
import com.iqser.red.service.redaction.v1.server.classification.model.Page;
|
||||
import com.iqser.red.service.redaction.v1.server.exception.RedactionException;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.service.DictionaryService;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.service.DroolsExecutionService;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.service.EntityRedactionService;
|
||||
import com.iqser.red.service.redaction.v1.server.segmentation.PdfSegmentationService;
|
||||
import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
|
||||
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
|
||||
import com.iqser.red.service.redaction.v1.server.visualization.service.AnnotationHighlightService;
|
||||
import com.iqser.red.service.redaction.v1.server.visualization.service.PdfFlattenService;
|
||||
import com.iqser.red.service.redaction.v1.server.visualization.service.PdfVisualisationService;
|
||||
|
||||
import lombok.RequiredArgsConstructor;
|
||||
import lombok.extern.slf4j.Slf4j;
|
||||
import org.apache.pdfbox.pdmodel.PDDocument;
|
||||
import org.springframework.web.bind.annotation.PathVariable;
|
||||
import org.springframework.web.bind.annotation.RequestBody;
|
||||
import org.springframework.web.bind.annotation.RestController;
|
||||
|
||||
import java.io.ByteArrayInputStream;
|
||||
import java.io.ByteArrayOutputStream;
|
||||
import java.io.IOException;
|
||||
import java.util.List;
|
||||
|
||||
@Slf4j
|
||||
@RestController
|
||||
@RequiredArgsConstructor
|
||||
public class RedactionController implements RedactionResource {
|
||||
@@ -37,9 +37,8 @@ public class RedactionController implements RedactionResource {
|
||||
private final PdfSegmentationService pdfSegmentationService;
|
||||
private final AnnotationHighlightService annotationHighlightService;
|
||||
private final EntityRedactionService entityRedactionService;
|
||||
private final PdfFlattenService pdfFlattenService;
|
||||
private final DroolsExecutionService droolsExecutionService;
|
||||
private final DictionaryService dictionaryService;
|
||||
|
||||
|
||||
@Override
|
||||
public RedactionResult redact(@RequestBody RedactionRequest redactionRequest) {
|
||||
@@ -48,22 +47,30 @@ public class RedactionController implements RedactionResource {
|
||||
pdDocument.setAllSecurityToBeRemoved(true);
|
||||
|
||||
Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
|
||||
entityRedactionService.processDocument(classifiedDoc, redactionRequest.getManualRedactions());
|
||||
annotationHighlightService.highlight(pdDocument, classifiedDoc, redactionRequest.isFlatRedaction(), redactionRequest.getManualRedactions());
|
||||
|
||||
if (redactionRequest.isFlatRedaction()) {
|
||||
PDDocument flatDocument = pdfFlattenService.flattenPDF(pdDocument);
|
||||
return convert(flatDocument, classifiedDoc.getPages().size(), classifiedDoc.getRedactionLogEntities());
|
||||
}
|
||||
log.info("Document structure analysis successful, starting redaction analysis...");
|
||||
|
||||
return convert(pdDocument, classifiedDoc.getPages().size(), classifiedDoc.getRedactionLogEntities());
|
||||
entityRedactionService.processDocument(classifiedDoc, redactionRequest.getRuleSetId(), redactionRequest.getManualRedactions());
|
||||
annotationHighlightService.highlight(pdDocument, classifiedDoc, redactionRequest.isFlatRedaction(), redactionRequest
|
||||
.getManualRedactions(), redactionRequest.getRuleSetId());
|
||||
|
||||
} catch (IOException e) {
|
||||
log.info("Redaction analysis successful...");
|
||||
|
||||
return convert(pdDocument,
|
||||
classifiedDoc.getPages().size(),
|
||||
classifiedDoc.getRedactionLogEntities(),
|
||||
classifiedDoc.getSectionGrid(),
|
||||
classifiedDoc.getDictionaryVersion(),
|
||||
classifiedDoc.getRulesVersion(),
|
||||
redactionRequest.getRuleSetId());
|
||||
|
||||
} catch (Exception e) {
|
||||
throw new RedactionException(e);
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
|
||||
@Override
|
||||
public RedactionResult classify(@RequestBody RedactionRequest pdfSegmentationRequest) {
|
||||
|
||||
@@ -73,7 +80,7 @@ public class RedactionController implements RedactionResource {
|
||||
Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
|
||||
pdfVisualisationService.visualizeClassifications(classifiedDoc, pdDocument);
|
||||
|
||||
return convert(pdDocument, classifiedDoc.getPages().size());
|
||||
return convert(pdDocument, classifiedDoc.getPages().size(), pdfSegmentationRequest.getRuleSetId());
|
||||
|
||||
} catch (IOException e) {
|
||||
throw new RedactionException(e);
|
||||
@@ -81,6 +88,7 @@ public class RedactionController implements RedactionResource {
|
||||
|
||||
}
|
||||
|
||||
|
||||
@Override
|
||||
public RedactionResult sections(@RequestBody RedactionRequest redactionRequest) {
|
||||
|
||||
@@ -90,7 +98,7 @@ public class RedactionController implements RedactionResource {
|
||||
Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
|
||||
pdfVisualisationService.visualizeParagraphs(classifiedDoc, pdDocument);
|
||||
|
||||
return convert(pdDocument, classifiedDoc.getPages().size());
|
||||
return convert(pdDocument, classifiedDoc.getPages().size(), redactionRequest.getRuleSetId());
|
||||
|
||||
} catch (IOException e) {
|
||||
throw new RedactionException(e);
|
||||
@@ -98,6 +106,7 @@ public class RedactionController implements RedactionResource {
|
||||
|
||||
}
|
||||
|
||||
|
||||
@Override
|
||||
public RedactionResult htmlTables(@RequestBody RedactionRequest redactionRequest) {
|
||||
|
||||
@@ -124,24 +133,35 @@ public class RedactionController implements RedactionResource {
|
||||
|
||||
}
|
||||
|
||||
|
||||
@Override
|
||||
public void updateRules(@RequestBody String rules) {
|
||||
droolsExecutionService.updateRules(rules);
|
||||
public void updateRules(@PathVariable(RULE_SET_PARAMETER_NAME) String ruleSetId) {
|
||||
droolsExecutionService.updateRules(ruleSetId);
|
||||
}
|
||||
|
||||
@Override
|
||||
public void testRules(@RequestBody String rules) {
|
||||
droolsExecutionService.testRules(rules);
|
||||
}
|
||||
|
||||
|
||||
private RedactionResult convert(PDDocument document, int numberOfPages) throws IOException {
|
||||
return convert(document, numberOfPages, null);
|
||||
private RedactionResult convert(PDDocument document, int numberOfPages, String ruleSetId) throws IOException {
|
||||
|
||||
return convert(document, numberOfPages, null, null, 0, 0, ruleSetId);
|
||||
}
|
||||
|
||||
private RedactionResult convert(PDDocument document, int numberOfPages, List<RedactionLogEntry> redactionLogEntities) throws IOException {
|
||||
|
||||
private RedactionResult convert(PDDocument document, int numberOfPages,
|
||||
List<RedactionLogEntry> redactionLogEntities,
|
||||
SectionGrid sectionGrid, long dictionaryVersion, long rulesVersion, String ruleSetId) throws IOException {
|
||||
|
||||
try (ByteArrayOutputStream byteArrayOutputStream = new ByteArrayOutputStream()) {
|
||||
document.save(byteArrayOutputStream);
|
||||
return RedactionResult.builder()
|
||||
.document(byteArrayOutputStream.toByteArray())
|
||||
.numberOfPages(numberOfPages)
|
||||
.redactionLog(new RedactionLog(redactionLogEntities, dictionaryService.getDictionaryVersion(), droolsExecutionService.getRulesVersion()))
|
||||
.redactionLog(new RedactionLog(redactionLogEntities, dictionaryVersion, rulesVersion, ruleSetId))
|
||||
.sectionGrid(sectionGrid)
|
||||
.build();
|
||||
}
|
||||
|
||||
|
||||
+6
-7
@@ -212,7 +212,7 @@ public class PDFLinesTextStripper extends PDFTextStripper {
|
||||
maxCharWidths = charWidth;
|
||||
}
|
||||
|
||||
if (i == 0 && textPositions.get(i).getUnicode().equals(" ")) {
|
||||
if (i == 0 && (textPositions.get(i).getUnicode().equals(" ") || textPositions.get(i).getUnicode().equals("\u00A0"))) {
|
||||
startIndex++;
|
||||
continue;
|
||||
}
|
||||
@@ -220,15 +220,15 @@ public class PDFLinesTextStripper extends PDFTextStripper {
|
||||
// Strange but sometimes this is happening, for example: Metolachlor2.pdf
|
||||
if (i > 0 && textPositions.get(i).getX() < textPositions.get(i - 1).getX()) {
|
||||
List<TextPosition> sublist = textPositions.subList(startIndex, i);
|
||||
if (!(sublist.isEmpty() || sublist.size() == 1 && sublist.get(0).getUnicode().equals(" "))) {
|
||||
if (!(sublist.isEmpty() || sublist.size() == 1 && (sublist.get(0).getUnicode().equals(" ") || sublist.get(0).getUnicode().equals("\u00A0")))) {
|
||||
textPositionSequences.add(new TextPositionSequence(sublist, pageNumber));
|
||||
}
|
||||
startIndex = i;
|
||||
}
|
||||
|
||||
if (i > 0 && textPositions.get(i).getUnicode().equals(" ") && i <= textPositions.size() - 2) {
|
||||
if (i > 0 && (textPositions.get(i).getUnicode().equals(" ") || textPositions.get(i).getUnicode().equals("\u00A0")) && i <= textPositions.size() - 2) {
|
||||
List<TextPosition> sublist = textPositions.subList(startIndex, i);
|
||||
if (!(sublist.isEmpty() || sublist.size() == 1 && sublist.get(0).getUnicode().equals(" "))) {
|
||||
if (!(sublist.isEmpty() || sublist.size() == 1 && (sublist.get(0).getUnicode().equals(" ") || sublist.get(0).getUnicode().equals("\u00A0")))) {
|
||||
textPositionSequences.add(new TextPositionSequence(sublist, pageNumber));
|
||||
}
|
||||
startIndex = i + 1;
|
||||
@@ -236,14 +236,13 @@ public class PDFLinesTextStripper extends PDFTextStripper {
|
||||
}
|
||||
|
||||
List<TextPosition> sublist = textPositions.subList(startIndex, textPositions.size());
|
||||
if (!sublist.isEmpty() && sublist.get(sublist.size() - 1).getUnicode().equals(" ")) {
|
||||
if (!sublist.isEmpty() && (sublist.get(sublist.size() - 1).getUnicode().equals(" ") || sublist.get(sublist.size() - 1).getUnicode().equals("\u00A0"))) {
|
||||
sublist = sublist.subList(0, sublist.size() - 1);
|
||||
}
|
||||
if (!(sublist.isEmpty() || sublist.size() == 1 && sublist.get(0).getUnicode().equals(" "))) {
|
||||
if (!(sublist.isEmpty() || sublist.size() == 1 && (sublist.get(0).getUnicode().equals(" ") || sublist.get(0).getUnicode().equals("\u00A0")))) {
|
||||
textPositionSequences.add(new TextPositionSequence(sublist, pageNumber));
|
||||
}
|
||||
super.writeString(text);
|
||||
|
||||
}
|
||||
|
||||
@Override
|
||||
|
||||
+21
-11
@@ -1,5 +1,8 @@
|
||||
package com.iqser.red.service.redaction.v1.server.redaction.model;
|
||||
|
||||
import java.util.Iterator;
|
||||
import java.util.List;
|
||||
|
||||
import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
|
||||
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.utils.TextNormalizationUtilities;
|
||||
@@ -9,9 +12,9 @@ import lombok.Value;
|
||||
@Value
|
||||
public class CellValue {
|
||||
|
||||
TextBlock textBlock;
|
||||
private List<TextBlock> textBlocks;
|
||||
|
||||
int rowSpanStart;
|
||||
private int rowSpanStart;
|
||||
|
||||
|
||||
@Override
|
||||
@@ -19,17 +22,24 @@ public class CellValue {
|
||||
|
||||
StringBuilder sb = new StringBuilder();
|
||||
|
||||
TextPositionSequence previous = null;
|
||||
for (TextPositionSequence word : textBlock.getSequences()) {
|
||||
if (previous != null) {
|
||||
if (Math.abs(previous.getRotationAdjustedY() - word.getRotationAdjustedY()) > word.getTextHeight()) {
|
||||
sb.append('\n');
|
||||
} else {
|
||||
sb.append(' ');
|
||||
Iterator<TextBlock> itty = textBlocks.iterator();
|
||||
while (itty.hasNext()) {
|
||||
TextBlock textBlock = itty.next();
|
||||
TextPositionSequence previous = null;
|
||||
for (TextPositionSequence word : textBlock.getSequences()) {
|
||||
if (previous != null) {
|
||||
if (Math.abs(previous.getRotationAdjustedY() - word.getRotationAdjustedY()) > word.getTextHeight()) {
|
||||
sb.append('\n');
|
||||
} else {
|
||||
sb.append(' ');
|
||||
}
|
||||
}
|
||||
sb.append(word.toString());
|
||||
previous = word;
|
||||
}
|
||||
if (itty.hasNext()) {
|
||||
sb.append(' ');
|
||||
}
|
||||
sb.append(word.toString());
|
||||
previous = word;
|
||||
}
|
||||
|
||||
return TextNormalizationUtilities.removeHyphenLineBreaks(sb.toString())
|
||||
|
||||
+88
@@ -0,0 +1,88 @@
|
||||
package com.iqser.red.service.redaction.v1.server.redaction.model;
|
||||
|
||||
import java.util.HashMap;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
import java.util.Set;
|
||||
|
||||
import lombok.Data;
|
||||
import lombok.Getter;
|
||||
|
||||
@Data
|
||||
public class Dictionary {
|
||||
|
||||
public static final String RECOMMENDATION_PREFIX = "recommendation_";
|
||||
|
||||
@Getter
|
||||
private List<DictionaryModel> dictionaryModels;
|
||||
private Map<String, DictionaryModel> localAccessMap = new HashMap<>();
|
||||
|
||||
@Getter
|
||||
private long version;
|
||||
|
||||
|
||||
public Dictionary(List<DictionaryModel> dictionaryModels, long dictionaryVersion){
|
||||
this.dictionaryModels = dictionaryModels;
|
||||
this.dictionaryModels.forEach(dm -> localAccessMap.put(dm.getType(), dm));
|
||||
this.version = dictionaryVersion;
|
||||
}
|
||||
|
||||
|
||||
public boolean isRecommendation(String type) {
|
||||
|
||||
DictionaryModel model = localAccessMap.get(type);
|
||||
if (model != null) {
|
||||
return model.isRecommendation();
|
||||
}
|
||||
return false;
|
||||
}
|
||||
|
||||
|
||||
public boolean hasLocalEntries() {
|
||||
|
||||
return dictionaryModels.stream().anyMatch(dm -> !dm.getLocalEntries().isEmpty());
|
||||
}
|
||||
|
||||
|
||||
public Set<String> getTypes() {
|
||||
|
||||
return localAccessMap.keySet();
|
||||
}
|
||||
|
||||
|
||||
public boolean containsValue(String type, String value) {
|
||||
|
||||
if (localAccessMap.containsKey(type) && localAccessMap.get(type)
|
||||
.getEntries()
|
||||
.contains(value) || localAccessMap.containsKey(type) && localAccessMap.get(type)
|
||||
.getLocalEntries()
|
||||
.contains(value) || localAccessMap.containsKey(RECOMMENDATION_PREFIX + type) && localAccessMap.get(RECOMMENDATION_PREFIX + type)
|
||||
.getEntries()
|
||||
.contains(value) || localAccessMap.containsKey(RECOMMENDATION_PREFIX + type) && localAccessMap.get(RECOMMENDATION_PREFIX + type)
|
||||
.getLocalEntries()
|
||||
.contains(value)) {
|
||||
return true;
|
||||
}
|
||||
return false;
|
||||
}
|
||||
|
||||
|
||||
public boolean isHint(String type) {
|
||||
|
||||
DictionaryModel model = localAccessMap.get(type);
|
||||
if (model != null) {
|
||||
return model.isHint();
|
||||
}
|
||||
return false;
|
||||
}
|
||||
|
||||
public boolean isCaseInsensitiveDictionary(String type) {
|
||||
|
||||
DictionaryModel dictionaryModel = localAccessMap.get(type);
|
||||
if (dictionaryModel != null) {
|
||||
return dictionaryModel.isCaseInsensitive();
|
||||
}
|
||||
return false;
|
||||
}
|
||||
|
||||
}
|
||||
+27
@@ -0,0 +1,27 @@
|
||||
package com.iqser.red.service.redaction.v1.server.redaction.model;
|
||||
|
||||
|
||||
import java.io.Serializable;
|
||||
import java.util.Set;
|
||||
|
||||
import lombok.AllArgsConstructor;
|
||||
import lombok.Data;
|
||||
|
||||
@Data
|
||||
@AllArgsConstructor
|
||||
public class DictionaryModel implements Serializable {
|
||||
|
||||
private String type;
|
||||
private int rank;
|
||||
private float[] color;
|
||||
private boolean caseInsensitive;
|
||||
private boolean hint;
|
||||
private boolean recommendation;
|
||||
private Set<String> entries;
|
||||
private Set<String> localEntries;
|
||||
|
||||
public Set<String> getValues(boolean local){
|
||||
return local ? localEntries : entries;
|
||||
}
|
||||
|
||||
}
|
||||
+24
@@ -0,0 +1,24 @@
|
||||
package com.iqser.red.service.redaction.v1.server.redaction.model;
|
||||
|
||||
import lombok.Data;
|
||||
|
||||
import java.util.ArrayList;
|
||||
import java.util.HashMap;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
|
||||
@Data
|
||||
public class DictionaryRepresentation {
|
||||
|
||||
private String ruleSetId;
|
||||
private long dictionaryVersion = -1;
|
||||
private List<DictionaryModel> dictionary = new ArrayList<>();
|
||||
private float[] defaultColor;
|
||||
private float[] requestAddColor;
|
||||
private float[] requestRemoveColor;
|
||||
private float[] notRedactedColor;
|
||||
private Map<String, DictionaryModel> localAccessMap = new HashMap<>();
|
||||
|
||||
|
||||
|
||||
}
|
||||
+15
-3
@@ -12,7 +12,7 @@ import lombok.EqualsAndHashCode;
|
||||
@EqualsAndHashCode(onlyExplicitlyIncluded = true)
|
||||
public class Entity {
|
||||
|
||||
@EqualsAndHashCode.Include
|
||||
|
||||
private final String word;
|
||||
private final String type;
|
||||
private boolean redaction;
|
||||
@@ -20,7 +20,10 @@ public class Entity {
|
||||
private String legalBasis;
|
||||
private List<EntityPositionSequence> positionSequences = new ArrayList<>();
|
||||
private List<TextPositionSequence> targetSequences;
|
||||
|
||||
@EqualsAndHashCode.Include
|
||||
private Integer start;
|
||||
@EqualsAndHashCode.Include
|
||||
private Integer end;
|
||||
|
||||
@EqualsAndHashCode.Include
|
||||
@@ -30,8 +33,13 @@ public class Entity {
|
||||
@EqualsAndHashCode.Include
|
||||
private int sectionNumber;
|
||||
|
||||
private boolean isDictionaryEntry;
|
||||
|
||||
public Entity(String word, String type, boolean redaction, String redactionReason, List<EntityPositionSequence> positionSequences, String headline, int matchedRule, int sectionNumber, String legalBasis) {
|
||||
private String textBefore;
|
||||
private String textAfter;
|
||||
|
||||
|
||||
public Entity(String word, String type, boolean redaction, String redactionReason, List<EntityPositionSequence> positionSequences, String headline, int matchedRule, int sectionNumber, String legalBasis, boolean isDictionaryEntry, String textBefore, String textAfter) {
|
||||
|
||||
this.word = word;
|
||||
this.type = type;
|
||||
@@ -42,10 +50,13 @@ public class Entity {
|
||||
this.matchedRule = matchedRule;
|
||||
this.sectionNumber = sectionNumber;
|
||||
this.legalBasis = legalBasis;
|
||||
this.isDictionaryEntry = isDictionaryEntry;
|
||||
this.textBefore = textBefore;
|
||||
this.textAfter = textAfter;
|
||||
}
|
||||
|
||||
|
||||
public Entity(String word, String type, Integer start, Integer end, String headline, int sectionNumber) {
|
||||
public Entity(String word, String type, Integer start, Integer end, String headline, int sectionNumber, boolean isDictionaryEntry) {
|
||||
|
||||
this.word = word;
|
||||
this.type = type;
|
||||
@@ -53,6 +64,7 @@ public class Entity {
|
||||
this.end = end;
|
||||
this.headline = headline;
|
||||
this.sectionNumber = sectionNumber;
|
||||
this.isDictionaryEntry = isDictionaryEntry;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
+196
-106
@@ -1,14 +1,22 @@
|
||||
package com.iqser.red.service.redaction.v1.server.redaction.model;
|
||||
|
||||
import java.util.ArrayList;
|
||||
import static com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary.RECOMMENDATION_PREFIX;
|
||||
|
||||
import java.util.Collection;
|
||||
import java.util.HashMap;
|
||||
import java.util.HashSet;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
import java.util.Set;
|
||||
import java.util.regex.Matcher;
|
||||
import java.util.regex.Pattern;
|
||||
import java.util.stream.Collectors;
|
||||
|
||||
import org.apache.commons.lang3.StringUtils;
|
||||
|
||||
import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.utils.EntitySearchUtils;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.utils.Patterns;
|
||||
|
||||
import lombok.Builder;
|
||||
import lombok.Data;
|
||||
import lombok.extern.slf4j.Slf4j;
|
||||
@@ -18,6 +26,13 @@ import lombok.extern.slf4j.Slf4j;
|
||||
@Builder
|
||||
public class Section {
|
||||
|
||||
private boolean isLocal;
|
||||
|
||||
private Set<String> dictionaryTypes;
|
||||
|
||||
@Builder.Default
|
||||
private Map<String, Set<String>> localDictionaryAdds = new HashMap<>();
|
||||
|
||||
private Set<Entity> entities;
|
||||
|
||||
// This still contains linebreaks etc.
|
||||
@@ -32,14 +47,17 @@ public class Section {
|
||||
|
||||
private Map<String, CellValue> tabularData;
|
||||
|
||||
private Dictionary dictionary;
|
||||
|
||||
private SearchableText searchableText;
|
||||
|
||||
|
||||
public boolean rowEquals(String headerName, String value) {
|
||||
|
||||
String cleanHeaderName = headerName.replaceAll("\n", "").replaceAll(" ", "").replaceAll("-", "");
|
||||
|
||||
return tabularData != null && tabularData.containsKey(cleanHeaderName) && tabularData.get(cleanHeaderName)
|
||||
.getTextBlock()
|
||||
.getText()
|
||||
.toString()
|
||||
.equals(value);
|
||||
}
|
||||
|
||||
@@ -58,8 +76,11 @@ public class Section {
|
||||
|
||||
public void redact(String type, int ruleNumber, String reason, String legalBasis) {
|
||||
|
||||
boolean hasRecommendationDictionary = dictionaryTypes.contains(RECOMMENDATION_PREFIX + type);
|
||||
|
||||
entities.forEach(entity -> {
|
||||
if (entity.getType().equals(type)) {
|
||||
if (entity.getType().equals(type) || hasRecommendationDictionary && entity.getType()
|
||||
.equals(RECOMMENDATION_PREFIX + type)) {
|
||||
entity.setRedaction(true);
|
||||
entity.setMatchedRule(ruleNumber);
|
||||
entity.setRedactionReason(reason);
|
||||
@@ -71,8 +92,11 @@ public class Section {
|
||||
|
||||
public void redactNot(String type, int ruleNumber, String reason) {
|
||||
|
||||
boolean hasRecommendationDictionary = dictionaryTypes.contains(RECOMMENDATION_PREFIX + type);
|
||||
|
||||
entities.forEach(entity -> {
|
||||
if (entity.getType().equals(type)) {
|
||||
if (entity.getType().equals(type) || hasRecommendationDictionary && entity.getType()
|
||||
.equals(RECOMMENDATION_PREFIX + type)) {
|
||||
entity.setRedaction(false);
|
||||
entity.setMatchedRule(ruleNumber);
|
||||
entity.setRedactionReason(reason);
|
||||
@@ -94,125 +118,154 @@ public class Section {
|
||||
}
|
||||
|
||||
|
||||
public void redactLineAfter(String start, String asType, int ruleNumber, String reason, String legalBasis) {
|
||||
public void addHintAnnotation(String value, String asType) {
|
||||
|
||||
Set<Entity> found = findEntities(value.trim(), asType, true, false, 0, null, null);
|
||||
addNewerToEntities(found);
|
||||
}
|
||||
|
||||
|
||||
public void redactLineAfter(String start, String asType, int ruleNumber, boolean redactEverywhere, String reason,
|
||||
String legalBasis) {
|
||||
|
||||
String[] values = StringUtils.substringsBetween(text, start, "\n");
|
||||
|
||||
if (values != null) {
|
||||
for (String value : values) {
|
||||
if (StringUtils.isNotBlank(value)) {
|
||||
Set<Entity> found = findEntities(value.trim(), asType);
|
||||
entities.addAll(found);
|
||||
Set<Entity> found = findEntities(value.trim(), asType, false, true, ruleNumber, reason, legalBasis);
|
||||
addNewerToEntities(found);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// TODO No need to iterate
|
||||
entities.forEach(entity -> {
|
||||
if (entity.getType().equals(asType)) {
|
||||
entity.setRedaction(true);
|
||||
entity.setMatchedRule(ruleNumber);
|
||||
entity.setRedactionReason(reason);
|
||||
entity.setLegalBasis(legalBasis);
|
||||
}
|
||||
});
|
||||
|
||||
}
|
||||
|
||||
|
||||
public void redactBetween(String start, String stop, String asType, int ruleNumber, String reason, String legalBasis) {
|
||||
public void redactByRegEx(String pattern, boolean patternCaseInsensitive, int group, String asType, int ruleNumber, String reason, String legalBasis) {
|
||||
Pattern compiledPattern = Patterns.getCompiledPattern(pattern, patternCaseInsensitive);
|
||||
|
||||
Matcher matcher = compiledPattern.matcher(searchText);
|
||||
|
||||
while (matcher.find()) {
|
||||
String match = matcher.group(group);
|
||||
if (StringUtils.isNotBlank(match)) {
|
||||
Set<Entity> found = findEntities(match.trim(), asType, false, true, ruleNumber, reason, legalBasis);
|
||||
addNewerToEntities(found);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
public void addRecommendationByRegEx(String pattern, boolean patternCaseInsensitive, int group, String asType) {
|
||||
Pattern compiledPattern = Patterns.getCompiledPattern(pattern, patternCaseInsensitive);
|
||||
|
||||
Matcher matcher = compiledPattern.matcher(text);
|
||||
|
||||
while (matcher.find()) {
|
||||
String match = matcher.group(group);
|
||||
if (StringUtils.isNotBlank(match) && match.length() >= 3) {
|
||||
localDictionaryAdds.computeIfAbsent(RECOMMENDATION_PREFIX + asType, (x) -> new HashSet<>())
|
||||
.add(match);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
public void redactBetween(String start, String stop, String asType, int ruleNumber, boolean redactEverywhere,
|
||||
String reason, String legalBasis) {
|
||||
|
||||
String[] values = StringUtils.substringsBetween(searchText, start, stop);
|
||||
|
||||
if (values != null) {
|
||||
for (String value : values) {
|
||||
if (StringUtils.isNotBlank(value)) {
|
||||
Set<Entity> found = findEntities(value.trim(), asType);
|
||||
entities.addAll(found);
|
||||
|
||||
Set<Entity> found = findEntities(value.trim(), asType, false, true, ruleNumber, reason, legalBasis);
|
||||
addNewerToEntities(found);
|
||||
|
||||
if (redactEverywhere && !isLocal()) {
|
||||
localDictionaryAdds.computeIfAbsent(asType, (x) -> new HashSet<>()).add(value.trim());
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// TODO No need to iterate
|
||||
entities.forEach(entity -> {
|
||||
if (entity.getType().equals(asType)) {
|
||||
|
||||
public void redactLinesBetween(String start, String stop, String asType, int ruleNumber,
|
||||
boolean redactEverywhere,
|
||||
String reason, String legalBasis) {
|
||||
|
||||
String[] values = StringUtils.substringsBetween(text, start, stop);
|
||||
|
||||
if (values != null) {
|
||||
for (String value : values) {
|
||||
if (StringUtils.isNotBlank(value)) {
|
||||
String[] lines = value.split("\n");
|
||||
|
||||
for (String line : lines) {
|
||||
|
||||
if (line.trim().length() <= 2) {
|
||||
return;
|
||||
}
|
||||
|
||||
Set<Entity> found = findEntities(line.trim(), asType, false, true, ruleNumber, reason, legalBasis);
|
||||
addNewerToEntities(found);
|
||||
|
||||
if (redactEverywhere && !isLocal()) {
|
||||
localDictionaryAdds.computeIfAbsent(asType, (x) -> new HashSet<>()).add(line.trim());
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
public void highlightCell(String cellHeader, int ruleNumber, String type) {
|
||||
|
||||
annotateCell(cellHeader, ruleNumber, type, false, false, null, null);
|
||||
}
|
||||
|
||||
|
||||
public void redactCell(String cellHeader, int ruleNumber, String type, boolean addAsRecommendations, String
|
||||
reason,
|
||||
String legalBasis) {
|
||||
|
||||
annotateCell(cellHeader, ruleNumber, type, true, addAsRecommendations, reason, legalBasis);
|
||||
}
|
||||
|
||||
|
||||
public void redactNotCell(String cellHeader, int ruleNumber, String type, boolean addAsRecommendations,
|
||||
String reason) {
|
||||
|
||||
annotateCell(cellHeader, ruleNumber, type, false, addAsRecommendations, reason, null);
|
||||
}
|
||||
|
||||
|
||||
private Set<Entity> findEntities(String value, String asType, boolean caseInsensitive, boolean redacted,
|
||||
int ruleNumber, String reason, String legalBasis) {
|
||||
|
||||
String text = caseInsensitive ? searchText.toLowerCase() : searchText;
|
||||
String searchValue = caseInsensitive ? value.toLowerCase() : value;
|
||||
|
||||
Set<Entity> found = EntitySearchUtils.find(text, Set.of(searchValue), asType, headline, sectionNumber, true);
|
||||
|
||||
found.forEach(entity -> {
|
||||
if (redacted) {
|
||||
entity.setRedaction(true);
|
||||
entity.setMatchedRule(ruleNumber);
|
||||
entity.setRedactionReason(reason);
|
||||
entity.setLegalBasis(legalBasis);
|
||||
}
|
||||
});
|
||||
|
||||
return EntitySearchUtils.clearAndFindPositions(found, searchableText, dictionary);
|
||||
}
|
||||
|
||||
|
||||
private Set<Entity> findEntities(String value, String asType) {
|
||||
|
||||
Set<Entity> found = new HashSet<>();
|
||||
|
||||
int startIndex;
|
||||
int stopIndex = 0;
|
||||
do {
|
||||
startIndex = searchText.indexOf(value, stopIndex);
|
||||
stopIndex = startIndex + value.length();
|
||||
|
||||
if (startIndex > -1 && (startIndex == 0 || Character.isWhitespace(searchText.charAt(startIndex - 1)) || isSeparator(
|
||||
searchText.charAt(startIndex - 1))) && (stopIndex == searchText.length() || isSeparator(searchText.charAt(
|
||||
stopIndex)))) {
|
||||
found.add(new Entity(searchText.substring(startIndex, stopIndex),
|
||||
asType,
|
||||
startIndex,
|
||||
stopIndex,
|
||||
headline,
|
||||
sectionNumber));
|
||||
}
|
||||
} while (startIndex > -1);
|
||||
|
||||
return removeEntitiesContainedInLarger(found);
|
||||
}
|
||||
|
||||
|
||||
private boolean isSeparator(char c) {
|
||||
|
||||
return Character.isWhitespace(c) || Pattern.matches("\\p{Punct}",
|
||||
String.valueOf(c)) || c == '\"' || c == '‘' || c == '’';
|
||||
}
|
||||
|
||||
|
||||
public Set<Entity> removeEntitiesContainedInLarger(Set<Entity> entities) {
|
||||
|
||||
List<Entity> wordsToRemove = new ArrayList<>();
|
||||
for (Entity word : entities) {
|
||||
for (Entity inner : entities) {
|
||||
if (inner.getWord().length() < word.getWord()
|
||||
.length() && inner.getStart() >= word.getStart() && inner.getEnd() <= word.getEnd() && word != inner) {
|
||||
wordsToRemove.add(inner);
|
||||
}
|
||||
}
|
||||
}
|
||||
entities.removeAll(wordsToRemove);
|
||||
return entities;
|
||||
}
|
||||
|
||||
|
||||
public void highlightCell(String cellHeader, int ruleNumber, String type) {
|
||||
|
||||
annotateCell(cellHeader, ruleNumber, type, false, null, null);
|
||||
}
|
||||
|
||||
|
||||
public void redactCell(String cellHeader, int ruleNumber, String type, String reason, String legalBasis) {
|
||||
|
||||
annotateCell(cellHeader, ruleNumber, type, true, reason, legalBasis);
|
||||
}
|
||||
|
||||
|
||||
public void redactNotCell(String cellHeader, int ruleNumber, String type, String reason) {
|
||||
|
||||
annotateCell(cellHeader, ruleNumber, type, false, reason, null);
|
||||
}
|
||||
|
||||
|
||||
private void annotateCell(String cellHeader, int ruleNumber, String type, boolean redact, String reason, String legalBasis) {
|
||||
private void annotateCell(String cellHeader, int ruleNumber, String type, boolean redact,
|
||||
boolean addAsRecommendations, String reason, String legalBasis) {
|
||||
|
||||
String cleanHeaderName = cellHeader.replaceAll("\n", "").replaceAll(" ", "").replaceAll("-", "");
|
||||
|
||||
@@ -221,25 +274,62 @@ public class Section {
|
||||
log.warn("Could not find any data for {}.", cellHeader);
|
||||
} else {
|
||||
String word = value.toString();
|
||||
Entity entity = new Entity(word,
|
||||
type,
|
||||
value.getRowSpanStart(),
|
||||
value.getRowSpanStart() + word.length(),
|
||||
headline,
|
||||
sectionNumber);
|
||||
|
||||
Entity entity = new Entity(word, type, value.getRowSpanStart(), value.getRowSpanStart() + word.length(), headline, sectionNumber, false);
|
||||
entity.setRedaction(redact);
|
||||
entity.setMatchedRule(ruleNumber);
|
||||
entity.setRedactionReason(reason);
|
||||
entity.setTargetSequences(value.getTextBlock()
|
||||
.getSequences()); // Make sure no other cells with same content are highlighted
|
||||
entity.setTargetSequences(value.getTextBlocks()
|
||||
.stream()
|
||||
.map(TextBlock::getSequences)
|
||||
.flatMap(Collection::stream)
|
||||
.collect(Collectors.toList())); // Make sure no other cells with same content are highlighted
|
||||
entity.setLegalBasis(legalBasis);
|
||||
|
||||
// HashSet keeps the older value, but we want the new only.
|
||||
entities.remove(entity);
|
||||
entities.add(entity);
|
||||
Set<Entity> singleEntitySet = new HashSet<>();
|
||||
singleEntitySet.add(entity);
|
||||
EntitySearchUtils.clearAndFindPositions(singleEntitySet, searchableText, dictionary);
|
||||
|
||||
entities = removeEntitiesContainedInLarger(entities);
|
||||
addNewerToEntities(entity);
|
||||
|
||||
EntitySearchUtils.removeEntitiesContainedInLarger(entities);
|
||||
|
||||
if (addAsRecommendations && !isLocal()) {
|
||||
String cleanedWord = word.replaceAll(",", " ").replaceAll(" ", " ").trim() + " ";
|
||||
Pattern pattern = Patterns.AUTHOR_TABLE_SPITTER;
|
||||
Matcher matcher = pattern.matcher(cleanedWord);
|
||||
|
||||
while (matcher.find()) {
|
||||
String match = matcher.group().trim();
|
||||
if (match.length() >= 3) {
|
||||
localDictionaryAdds.computeIfAbsent(RECOMMENDATION_PREFIX + type, (x) -> new HashSet<>())
|
||||
.add(match);
|
||||
String lastname = match.split(" ")[0];
|
||||
localDictionaryAdds.computeIfAbsent(RECOMMENDATION_PREFIX + type, (x) -> new HashSet<>())
|
||||
.add(lastname);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
private void addNewerToEntities(Set<Entity> found) {
|
||||
// HashSet keeps the older value, but we want the new only.
|
||||
entities.removeAll(found);
|
||||
entities.addAll(found);
|
||||
}
|
||||
|
||||
private void addNewerToEntities(Entity found) {
|
||||
// HashSet keeps the older value, but we want the new only.
|
||||
entities.remove(found);
|
||||
entities.add(found);
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
+13
@@ -0,0 +1,13 @@
|
||||
package com.iqser.red.service.redaction.v1.server.redaction.model;
|
||||
|
||||
import lombok.AllArgsConstructor;
|
||||
import lombok.Data;
|
||||
|
||||
@Data
|
||||
@AllArgsConstructor
|
||||
public class SectionSearchableTextPair {
|
||||
|
||||
private Section section;
|
||||
private SearchableText searchableText;
|
||||
|
||||
}
|
||||
+127
-68
@@ -1,7 +1,22 @@
|
||||
package com.iqser.red.service.redaction.v1.server.redaction.service;
|
||||
|
||||
import com.iqser.red.service.configuration.v1.api.model.Colors;
|
||||
import com.iqser.red.service.configuration.v1.api.model.TypeResponse;
|
||||
import com.iqser.red.service.configuration.v1.api.model.TypeResult;
|
||||
import com.iqser.red.service.redaction.v1.server.client.DictionaryClient;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryModel;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryRepresentation;
|
||||
import feign.FeignException;
|
||||
import lombok.RequiredArgsConstructor;
|
||||
import lombok.extern.slf4j.Slf4j;
|
||||
import org.apache.commons.collections4.CollectionUtils;
|
||||
import org.apache.commons.lang3.SerializationUtils;
|
||||
import org.springframework.stereotype.Service;
|
||||
|
||||
import java.awt.Color;
|
||||
import java.util.ArrayList;
|
||||
import java.util.Comparator;
|
||||
import java.util.HashMap;
|
||||
import java.util.HashSet;
|
||||
import java.util.List;
|
||||
@@ -9,92 +24,59 @@ import java.util.Map;
|
||||
import java.util.Set;
|
||||
import java.util.stream.Collectors;
|
||||
|
||||
import org.apache.commons.collections4.CollectionUtils;
|
||||
import org.springframework.stereotype.Service;
|
||||
|
||||
import com.iqser.red.service.configuration.v1.api.model.Colors;
|
||||
import com.iqser.red.service.configuration.v1.api.model.TypeResponse;
|
||||
import com.iqser.red.service.configuration.v1.api.model.TypeResult;
|
||||
import com.iqser.red.service.redaction.v1.server.client.DictionaryClient;
|
||||
|
||||
import feign.FeignException;
|
||||
import lombok.Getter;
|
||||
import lombok.RequiredArgsConstructor;
|
||||
import lombok.extern.slf4j.Slf4j;
|
||||
|
||||
@Slf4j
|
||||
@Service
|
||||
@RequiredArgsConstructor
|
||||
public class DictionaryService {
|
||||
|
||||
|
||||
private final DictionaryClient dictionaryClient;
|
||||
|
||||
@Getter
|
||||
private long dictionaryVersion = -1;
|
||||
|
||||
@Getter
|
||||
private Map<String, Set<String>> dictionary = new HashMap<>();
|
||||
|
||||
@Getter
|
||||
private Map<String, float[]> entryColors = new HashMap<>();
|
||||
|
||||
@Getter
|
||||
private List<String> hintTypes = new ArrayList<>();
|
||||
|
||||
@Getter
|
||||
private List<String> caseInsensitiveTypes = new ArrayList<>();
|
||||
|
||||
@Getter
|
||||
private float[] defaultColor;
|
||||
|
||||
@Getter
|
||||
private float[] requestAddColor;
|
||||
|
||||
@Getter
|
||||
private float[] requestRemoveColor;
|
||||
|
||||
@Getter
|
||||
private float[] notRedactedColor;
|
||||
private Map<String, DictionaryRepresentation> dictionariesByRuleSets = new HashMap<>();
|
||||
|
||||
|
||||
public void updateDictionary() {
|
||||
public void updateDictionary(String ruleSetId) {
|
||||
|
||||
long version = dictionaryClient.getVersion();
|
||||
if (version > dictionaryVersion) {
|
||||
dictionaryVersion = version;
|
||||
updateDictionaryEntry();
|
||||
long version = dictionaryClient.getVersion(ruleSetId);
|
||||
|
||||
var foundDictionary = dictionariesByRuleSets.get(ruleSetId);
|
||||
|
||||
if (foundDictionary == null || version > foundDictionary.getDictionaryVersion()) {
|
||||
updateDictionaryEntry(ruleSetId, version);
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
private void updateDictionaryEntry() {
|
||||
private void updateDictionaryEntry(String ruleSetId, long version) {
|
||||
|
||||
try {
|
||||
TypeResponse typeResponse = dictionaryClient.getAllTypes();
|
||||
DictionaryRepresentation dictionaryRepresentation = new DictionaryRepresentation();
|
||||
|
||||
TypeResponse typeResponse = dictionaryClient.getAllTypes(ruleSetId);
|
||||
if (typeResponse != null && CollectionUtils.isNotEmpty(typeResponse.getTypes())) {
|
||||
entryColors = typeResponse.getTypes()
|
||||
|
||||
List<DictionaryModel> dictionary = typeResponse.getTypes()
|
||||
.stream()
|
||||
.collect(Collectors.toMap(TypeResult::getType, t -> convertColor(t.getHexColor())));
|
||||
hintTypes = typeResponse.getTypes()
|
||||
.stream()
|
||||
.filter(TypeResult::isHint)
|
||||
.map(TypeResult::getType)
|
||||
.map(t -> new DictionaryModel(t.getType(), t.getRank(), convertColor(t.getHexColor()), t.isCaseInsensitive(), t
|
||||
.isHint(), t.isRecommendation(), convertEntries(t), new HashSet<>()))
|
||||
.sorted(Comparator.comparingInt(DictionaryModel::getRank).reversed())
|
||||
.collect(Collectors.toList());
|
||||
caseInsensitiveTypes = typeResponse.getTypes()
|
||||
.stream()
|
||||
.filter(TypeResult::isCaseInsensitive)
|
||||
.map(TypeResult::getType)
|
||||
.collect(Collectors.toList());
|
||||
dictionary = entryColors.keySet()
|
||||
.stream()
|
||||
.collect(Collectors.toMap(type -> type, this::convertEntries));
|
||||
|
||||
|
||||
Colors colors = dictionaryClient.getColors();
|
||||
defaultColor = convertColor(colors.getDefaultColor());
|
||||
requestAddColor = convertColor(colors.getRequestAdd());
|
||||
requestRemoveColor = convertColor(colors.getRequestRemove());
|
||||
notRedactedColor = convertColor(colors.getNotRedacted());
|
||||
dictionary.forEach(dm -> dictionaryRepresentation.getLocalAccessMap().put(dm.getType(), dm));
|
||||
|
||||
Colors colors = dictionaryClient.getColors(ruleSetId);
|
||||
|
||||
dictionaryRepresentation.setDefaultColor(convertColor(colors.getDefaultColor()));
|
||||
dictionaryRepresentation.setRequestAddColor(convertColor(colors.getRequestAdd()));
|
||||
dictionaryRepresentation.setRequestRemoveColor(convertColor(colors.getRequestRemove()));
|
||||
dictionaryRepresentation.setNotRedactedColor(convertColor(colors.getNotRedacted()));
|
||||
dictionaryRepresentation.setRuleSetId(ruleSetId);
|
||||
dictionaryRepresentation.setDictionaryVersion(version);
|
||||
dictionaryRepresentation.setDictionary(dictionary);
|
||||
|
||||
dictionariesByRuleSets.put(ruleSetId, dictionaryRepresentation);
|
||||
}
|
||||
} catch (FeignException e) {
|
||||
log.warn("Got some unknown feignException", e);
|
||||
@@ -103,16 +85,30 @@ public class DictionaryService {
|
||||
}
|
||||
|
||||
|
||||
private Set<String> convertEntries(String s) {
|
||||
public void updateExternalDictionary(Dictionary dictionary, String ruleSetId) {
|
||||
dictionary.getDictionaryModels().forEach(dm -> {
|
||||
if (dm.isRecommendation() && !dm.getLocalEntries().isEmpty()) {
|
||||
dictionaryClient.addEntries(dm.getType(), ruleSetId, new ArrayList<>(dm.getLocalEntries()), false);
|
||||
long externalVersion = dictionaryClient.getVersion(ruleSetId);
|
||||
if (externalVersion == dictionary.getVersion() + 1) {
|
||||
dictionary.setVersion(externalVersion);
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
if (caseInsensitiveTypes.contains(s)) {
|
||||
return dictionaryClient.getDictionaryForType(s)
|
||||
|
||||
private Set<String> convertEntries(TypeResult t) {
|
||||
|
||||
if (t.isCaseInsensitive()) {
|
||||
return dictionaryClient.getDictionaryForType(t.getType(), t.getRuleSetId())
|
||||
.getEntries()
|
||||
.stream()
|
||||
.map(String::toLowerCase)
|
||||
.collect(Collectors.toSet());
|
||||
} else {
|
||||
return new HashSet<>(dictionaryClient.getDictionaryForType(t.getType(), t.getRuleSetId()).getEntries());
|
||||
}
|
||||
return new HashSet<>(dictionaryClient.getDictionaryForType(s).getEntries());
|
||||
}
|
||||
|
||||
|
||||
@@ -122,4 +118,67 @@ public class DictionaryService {
|
||||
return new float[]{color.getRed() / 255f, color.getGreen() / 255f, color.getBlue() / 255f};
|
||||
}
|
||||
|
||||
|
||||
public boolean isCaseInsensitiveDictionary(String type, String ruleSetId) {
|
||||
|
||||
DictionaryModel dictionaryModel = dictionariesByRuleSets.get(ruleSetId).getLocalAccessMap().get(type);
|
||||
if (dictionaryModel != null) {
|
||||
return dictionaryModel.isCaseInsensitive();
|
||||
}
|
||||
return false;
|
||||
}
|
||||
|
||||
|
||||
public float[] getColor(String type, String ruleSetId) {
|
||||
|
||||
DictionaryModel model = dictionariesByRuleSets.get(ruleSetId).getLocalAccessMap().get(type);
|
||||
if (model != null) {
|
||||
return model.getColor();
|
||||
}
|
||||
return dictionariesByRuleSets.get(ruleSetId).getDefaultColor();
|
||||
}
|
||||
|
||||
|
||||
public boolean isHint(String type, String ruleSetId) {
|
||||
|
||||
DictionaryModel model = dictionariesByRuleSets.get(ruleSetId).getLocalAccessMap().get(type);
|
||||
if (model != null) {
|
||||
return model.isHint();
|
||||
}
|
||||
return false;
|
||||
}
|
||||
|
||||
public boolean isRecommendation(String type, String ruleSetId) {
|
||||
|
||||
DictionaryModel model = dictionariesByRuleSets.get(ruleSetId).getLocalAccessMap().get(type);
|
||||
if (model != null) {
|
||||
return model.isRecommendation();
|
||||
}
|
||||
return false;
|
||||
}
|
||||
|
||||
|
||||
public Dictionary getDeepCopyDictionary(String ruleSetId) {
|
||||
List<DictionaryModel> copy = new ArrayList<>();
|
||||
|
||||
var representation = dictionariesByRuleSets.get(ruleSetId);
|
||||
var dictionary = dictionariesByRuleSets.get(ruleSetId).getDictionary();
|
||||
dictionary.forEach(dm -> {
|
||||
copy.add(SerializationUtils.clone(dm));
|
||||
});
|
||||
|
||||
return new Dictionary(copy, representation.getDictionaryVersion());
|
||||
}
|
||||
|
||||
public float[] getRequestRemoveColor(String ruleSetId) {
|
||||
return dictionariesByRuleSets.get(ruleSetId).getRequestAddColor();
|
||||
}
|
||||
|
||||
public float[] getNotRedactedColor(String ruleSetId) {
|
||||
return dictionariesByRuleSets.get(ruleSetId).getNotRedactedColor();
|
||||
}
|
||||
|
||||
public float[] getRequestAddColor(String ruleSetId) {
|
||||
return dictionariesByRuleSets.get(ruleSetId).getRequestAddColor();
|
||||
}
|
||||
}
|
||||
+61
-26
@@ -1,9 +1,11 @@
|
||||
package com.iqser.red.service.redaction.v1.server.redaction.service;
|
||||
|
||||
import java.io.ByteArrayInputStream;
|
||||
import java.io.InputStream;
|
||||
import java.nio.charset.StandardCharsets;
|
||||
|
||||
import com.iqser.red.service.configuration.v1.api.model.RulesResponse;
|
||||
import com.iqser.red.service.redaction.v1.server.client.RulesClient;
|
||||
import com.iqser.red.service.redaction.v1.server.exception.RulesValidationException;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.Section;
|
||||
import lombok.Getter;
|
||||
import lombok.RequiredArgsConstructor;
|
||||
import org.apache.commons.lang3.StringUtils;
|
||||
import org.kie.api.KieServices;
|
||||
import org.kie.api.builder.KieBuilder;
|
||||
@@ -11,15 +13,13 @@ import org.kie.api.builder.KieFileSystem;
|
||||
import org.kie.api.builder.KieModule;
|
||||
import org.kie.api.runtime.KieContainer;
|
||||
import org.kie.api.runtime.KieSession;
|
||||
import org.springframework.beans.factory.annotation.Autowired;
|
||||
import org.springframework.stereotype.Service;
|
||||
|
||||
import com.iqser.red.service.redaction.v1.server.client.RulesClient;
|
||||
import com.iqser.red.service.redaction.v1.server.exception.RulesValidationException;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.Section;
|
||||
|
||||
import lombok.Getter;
|
||||
import lombok.RequiredArgsConstructor;
|
||||
import java.io.ByteArrayInputStream;
|
||||
import java.io.InputStream;
|
||||
import java.nio.charset.StandardCharsets;
|
||||
import java.util.HashMap;
|
||||
import java.util.Map;
|
||||
|
||||
@Service
|
||||
@RequiredArgsConstructor
|
||||
@@ -27,13 +27,22 @@ public class DroolsExecutionService {
|
||||
|
||||
private final RulesClient rulesClient;
|
||||
|
||||
@Autowired
|
||||
private KieContainer kieContainer;
|
||||
private Map<String, KieContainer> kieContainers = new HashMap<>();
|
||||
|
||||
public KieContainer getKieContainer(String ruleSetId) {
|
||||
KieContainer container = kieContainers.get(ruleSetId);
|
||||
if (container == null) {
|
||||
return createOrUpdateKieContainer(ruleSetId);
|
||||
} else {
|
||||
return container;
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
@Getter
|
||||
private long rulesVersion = -1;
|
||||
|
||||
public Section executeRules(Section section) {
|
||||
public Section executeRules(KieContainer kieContainer, Section section) {
|
||||
|
||||
KieSession kieSession = kieContainer.newKieSession();
|
||||
kieSession.setGlobal("section", section);
|
||||
@@ -45,34 +54,60 @@ public class DroolsExecutionService {
|
||||
|
||||
}
|
||||
|
||||
public void updateRules() {
|
||||
public KieContainer updateRules(String ruleSetId) {
|
||||
|
||||
long version = rulesClient.getVersion();
|
||||
long version = rulesClient.getVersion(ruleSetId);
|
||||
if (version > rulesVersion) {
|
||||
rulesVersion = version;
|
||||
updateRules(rulesClient.getRules().getRules());
|
||||
return createOrUpdateKieContainer(ruleSetId);
|
||||
}
|
||||
return getKieContainer(ruleSetId);
|
||||
|
||||
}
|
||||
|
||||
public void updateRules(String drlAsString) {
|
||||
private KieContainer createOrUpdateKieContainer(String ruleSetId) {
|
||||
|
||||
try {
|
||||
if (StringUtils.isEmpty(drlAsString)) {
|
||||
|
||||
RulesResponse rules = rulesClient.getRules(ruleSetId);
|
||||
if (rules == null || StringUtils.isEmpty(rules.getRules())) {
|
||||
throw new RuntimeException("Rules cannot be empty.");
|
||||
}
|
||||
|
||||
KieServices kieServices = KieServices.Factory.get();
|
||||
InputStream input = new ByteArrayInputStream(drlAsString.getBytes(StandardCharsets.UTF_8));
|
||||
KieFileSystem kieFileSystem = kieServices.newKieFileSystem();
|
||||
kieFileSystem.write("src/main/resources/drools/rules.drl", kieServices.getResources().newInputStreamResource(input));
|
||||
KieBuilder kieBuilder = kieServices.newKieBuilder(kieFileSystem);
|
||||
kieBuilder.buildAll();
|
||||
KieModule kieModule = kieBuilder.getKieModule();
|
||||
kieContainer.updateToVersion(kieModule.getReleaseId());
|
||||
KieModule kieModule = getKieModule(ruleSetId, rules.getRules(), kieServices);
|
||||
|
||||
var container = kieContainers.get(ruleSetId);
|
||||
if (container != null) {
|
||||
container.updateToVersion(kieModule.getReleaseId());
|
||||
return container;
|
||||
}
|
||||
|
||||
container = kieServices.newKieContainer(kieModule.getReleaseId());
|
||||
kieContainers.put(ruleSetId, container);
|
||||
return container;
|
||||
} catch (Exception e) {
|
||||
throw new RulesValidationException("Could not update rules: " + e.getMessage(), e);
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
private KieModule getKieModule(String ruleSetId, String rules, KieServices kieServices) {
|
||||
KieFileSystem kieFileSystem = kieServices.newKieFileSystem();
|
||||
InputStream input = new ByteArrayInputStream(rules.getBytes(StandardCharsets.UTF_8));
|
||||
kieFileSystem.write("src/main/resources/drools/rules" + ruleSetId + ".drl", kieServices.getResources()
|
||||
.newInputStreamResource(input));
|
||||
KieBuilder kieBuilder = kieServices.newKieBuilder(kieFileSystem);
|
||||
kieBuilder.buildAll();
|
||||
return kieBuilder.getKieModule();
|
||||
}
|
||||
|
||||
|
||||
public void testRules(String rules) {
|
||||
KieServices kieServices = KieServices.Factory.get();
|
||||
KieModule kieModule = getKieModule("test-rules", rules, kieServices);
|
||||
var container = kieServices.newKieContainer(kieModule.getReleaseId());
|
||||
container.newKieSession();
|
||||
container.dispose();
|
||||
}
|
||||
}
|
||||
+216
-121
@@ -6,10 +6,13 @@ import java.util.HashSet;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
import java.util.Set;
|
||||
import java.util.regex.Pattern;
|
||||
import java.util.concurrent.atomic.AtomicInteger;
|
||||
import java.util.stream.Collectors;
|
||||
import java.util.stream.Stream;
|
||||
|
||||
import org.apache.commons.collections4.CollectionUtils;
|
||||
import org.apache.commons.lang3.StringUtils;
|
||||
import org.kie.api.runtime.KieContainer;
|
||||
import org.springframework.stereotype.Service;
|
||||
|
||||
import com.iqser.red.service.redaction.v1.model.ManualRedactionEntry;
|
||||
@@ -19,91 +22,56 @@ import com.iqser.red.service.redaction.v1.server.classification.model.Document;
|
||||
import com.iqser.red.service.redaction.v1.server.classification.model.Paragraph;
|
||||
import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.CellValue;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryModel;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.EntityPositionSequence;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.Section;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.SectionSearchableTextPair;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.utils.EntitySearchUtils;
|
||||
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Cell;
|
||||
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
|
||||
|
||||
import lombok.RequiredArgsConstructor;
|
||||
import lombok.extern.slf4j.Slf4j;
|
||||
|
||||
@Slf4j
|
||||
@Service
|
||||
@RequiredArgsConstructor
|
||||
public class EntityRedactionService {
|
||||
|
||||
private final DictionaryService dictionaryService;
|
||||
private final DroolsExecutionService droolsExecutionService;
|
||||
private final SurroundingWordsService surroundingWordsService;
|
||||
|
||||
|
||||
public void processDocument(Document classifiedDoc, ManualRedactions manualRedactions) {
|
||||
public void processDocument(Document classifiedDoc, String ruleSetId, ManualRedactions manualRedactions) {
|
||||
|
||||
dictionaryService.updateDictionary();
|
||||
droolsExecutionService.updateRules();
|
||||
dictionaryService.updateDictionary(ruleSetId);
|
||||
KieContainer container = droolsExecutionService.updateRules(ruleSetId);
|
||||
long rulesVersion = droolsExecutionService.getRulesVersion();
|
||||
|
||||
Set<Entity> documentEntities = new HashSet<>();
|
||||
int sectionNumber = 1;
|
||||
for (Paragraph paragraph : classifiedDoc.getParagraphs()) {
|
||||
Dictionary dictionary = dictionaryService.getDeepCopyDictionary(ruleSetId);
|
||||
|
||||
SearchableText searchableText = paragraph.getSearchableText();
|
||||
Set<Entity> documentEntities = new HashSet<>(findEntities(classifiedDoc, container, manualRedactions, dictionary, false, null));
|
||||
|
||||
List<Table> tables = paragraph.getTables();
|
||||
if (dictionary.hasLocalEntries()) {
|
||||
|
||||
for (Table table : tables) {
|
||||
boolean singleCellTable = table.getRowCount() == 1 && table.getColCount() == 1;
|
||||
for (List<Cell> row : table.getRows()) {
|
||||
SearchableText searchableRow = new SearchableText();
|
||||
Map<String, CellValue> tabularData = new HashMap<>();
|
||||
int start = 0;
|
||||
for (Cell cell : row) {
|
||||
if (!singleCellTable && cell.isHeaderCell() || CollectionUtils.isEmpty(cell.getTextBlocks())) {
|
||||
continue;
|
||||
}
|
||||
addSectionToManualRedactions(cell.getTextBlocks(), manualRedactions, table.getHeadline(), sectionNumber);
|
||||
int cellStart = start;
|
||||
cell.getHeaderCells().forEach(headerCell -> {
|
||||
StringBuilder headerBuilder = new StringBuilder();
|
||||
headerCell.getTextBlocks().forEach(textBlock -> headerBuilder.append(textBlock.getText()));
|
||||
String headerName = headerBuilder.toString()
|
||||
.replaceAll("\n", "")
|
||||
.replaceAll(" ", "")
|
||||
.replaceAll("-", "");
|
||||
tabularData.put(headerName, new CellValue(cell.getTextBlocks().get(0), cellStart));
|
||||
});
|
||||
start = start + cell.toString().length() + 1; // include automatically appended white space
|
||||
for (TextBlock textBlock : cell.getTextBlocks()) {
|
||||
searchableRow.addAll(textBlock.getSequences());
|
||||
}
|
||||
}
|
||||
Set<Entity> rowEntities = findEntities(searchableRow, table.getHeadline(), sectionNumber);
|
||||
|
||||
Section analysedRowSection = droolsExecutionService.executeRules(Section.builder()
|
||||
.entities(rowEntities)
|
||||
.text(searchableRow.getAsStringWithLinebreaks())
|
||||
.searchText(searchableRow.toString())
|
||||
.headline(table.getHeadline())
|
||||
.sectionNumber(sectionNumber)
|
||||
.tabularData(tabularData)
|
||||
.build());
|
||||
|
||||
documentEntities.addAll(clearAndFindPositions(analysedRowSection.getEntities(), searchableRow));
|
||||
sectionNumber++;
|
||||
Map<Integer, Set<Entity>> hintsPerSectionNumber = new HashMap<>();
|
||||
documentEntities.stream().forEach(entity -> {
|
||||
if (dictionary.isHint(entity.getType())) {
|
||||
hintsPerSectionNumber.computeIfAbsent(entity.getSectionNumber(), (x) -> new HashSet<>())
|
||||
.add(entity);
|
||||
}
|
||||
sectionNumber++;
|
||||
}
|
||||
});
|
||||
|
||||
addSectionToManualRedactions(paragraph.getTextBlocks(), manualRedactions, paragraph.getHeadline(), sectionNumber);
|
||||
Set<Entity> entities = findEntities(searchableText, paragraph.getHeadline(), sectionNumber);
|
||||
Section analysedSection = droolsExecutionService.executeRules(Section.builder()
|
||||
.entities(entities)
|
||||
.text(searchableText.getAsStringWithLinebreaks())
|
||||
.searchText(searchableText.toString())
|
||||
.headline(paragraph.getHeadline())
|
||||
.sectionNumber(sectionNumber)
|
||||
.build());
|
||||
Set<Entity> foundByLocal = findEntities(classifiedDoc, container, manualRedactions, dictionary, true, hintsPerSectionNumber);
|
||||
// HashSet keeps the older value, but we want the new only.
|
||||
documentEntities.removeAll(foundByLocal);
|
||||
documentEntities.addAll(foundByLocal);
|
||||
|
||||
documentEntities.addAll(clearAndFindPositions(analysedSection.getEntities(), searchableText));
|
||||
sectionNumber++;
|
||||
EntitySearchUtils.removeEntitiesContainedInLarger(documentEntities);
|
||||
}
|
||||
|
||||
for (Entity entity : documentEntities) {
|
||||
@@ -117,30 +85,200 @@ public class EntityRedactionService {
|
||||
classifiedDoc.getEntities()
|
||||
.computeIfAbsent(entry.getKey(), (x) -> new ArrayList<>())
|
||||
.add(new Entity(entity.getWord(), entity.getType(), entity.isRedaction(), entity.getRedactionReason(), entry
|
||||
.getValue(), entity.getHeadline(), entity.getMatchedRule(), entity.getSectionNumber(), entity.getLegalBasis()));
|
||||
.getValue(), entity.getHeadline(), entity.getMatchedRule(), entity.getSectionNumber(), entity
|
||||
.getLegalBasis(), entity.isDictionaryEntry(), entity.getTextBefore(), entity.getTextAfter()));
|
||||
}
|
||||
}
|
||||
|
||||
dictionaryService.updateExternalDictionary(dictionary, ruleSetId);
|
||||
|
||||
classifiedDoc.setDictionaryVersion(dictionary.getVersion());
|
||||
classifiedDoc.setRulesVersion(rulesVersion);
|
||||
}
|
||||
|
||||
|
||||
private Set<Entity> clearAndFindPositions(Set<Entity> entities, SearchableText text) {
|
||||
private Set<Entity> findEntities(Document classifiedDoc, KieContainer kieContainer,
|
||||
ManualRedactions manualRedactions, Dictionary dictionary, boolean local,
|
||||
Map<Integer, Set<Entity>> hintsPerSectionNumber) {
|
||||
|
||||
removeEntitiesContainedInLarger(entities);
|
||||
Set<Entity> documentEntities = new HashSet<>();
|
||||
|
||||
for (Entity entity : entities) {
|
||||
if (dictionaryService.getCaseInsensitiveTypes().contains(entity.getType())) {
|
||||
entity.setPositionSequences(text.getSequences(entity.getWord(), true, entity.getTargetSequences()));
|
||||
} else {
|
||||
entity.setPositionSequences(text.getSequences(entity.getWord(), false, entity.getTargetSequences()));
|
||||
AtomicInteger sectionNumber = new AtomicInteger(1);
|
||||
List<SectionSearchableTextPair> sectionSearchableTextPairs = new ArrayList<>();
|
||||
for (Paragraph paragraph : classifiedDoc.getParagraphs()) {
|
||||
|
||||
List<Table> tables = paragraph.getTables();
|
||||
for (Table table : tables) {
|
||||
if (table.getColCount() == 2) {
|
||||
sectionSearchableTextPairs.addAll(processTableAsOneText(table, manualRedactions, sectionNumber, dictionary, local, hintsPerSectionNumber));
|
||||
} else {
|
||||
sectionSearchableTextPairs.addAll(processTablePerRow(table, manualRedactions, sectionNumber, dictionary, local, hintsPerSectionNumber));
|
||||
}
|
||||
sectionNumber.incrementAndGet();
|
||||
}
|
||||
sectionSearchableTextPairs.add(processText(paragraph, manualRedactions, sectionNumber, dictionary, local, hintsPerSectionNumber));
|
||||
sectionNumber.incrementAndGet();
|
||||
}
|
||||
|
||||
sectionSearchableTextPairs.forEach(sectionSearchableTextPair -> {
|
||||
Section analysedRowSection = droolsExecutionService.executeRules(kieContainer, sectionSearchableTextPair.getSection());
|
||||
documentEntities.addAll(analysedRowSection.getEntities());
|
||||
|
||||
analysedRowSection.getLocalDictionaryAdds().keySet().forEach(key -> {
|
||||
if (dictionary.isRecommendation(key)) {
|
||||
analysedRowSection.getLocalDictionaryAdds().get(key).forEach(value -> {
|
||||
if (!dictionary.containsValue(key, value)) {
|
||||
dictionary.getLocalAccessMap().get(key).getLocalEntries().add(value);
|
||||
}
|
||||
});
|
||||
} else {
|
||||
analysedRowSection.getLocalDictionaryAdds().get(key).forEach(value -> {
|
||||
|
||||
if (dictionary.getLocalAccessMap().get(key) == null) {
|
||||
log.warn("Dictionary {} is null", key);
|
||||
}
|
||||
|
||||
if (dictionary.getLocalAccessMap().get(key).getLocalEntries() == null) {
|
||||
log.warn("Dictionary {} localEntries is null", key);
|
||||
}
|
||||
|
||||
dictionary.getLocalAccessMap().get(key).getLocalEntries().add(value);
|
||||
});
|
||||
}
|
||||
});
|
||||
|
||||
});
|
||||
|
||||
return documentEntities;
|
||||
}
|
||||
|
||||
|
||||
private List<SectionSearchableTextPair> processTablePerRow(Table table, ManualRedactions manualRedactions,
|
||||
AtomicInteger sectionNumber, Dictionary dictionary,
|
||||
boolean local,
|
||||
Map<Integer, Set<Entity>> hintsPerSectionNumber) {
|
||||
|
||||
List<SectionSearchableTextPair> sectionSearchableTextPairs = new ArrayList<>();
|
||||
for (List<Cell> row : table.getRows()) {
|
||||
SearchableText searchableRow = new SearchableText();
|
||||
Map<String, CellValue> tabularData = new HashMap<>();
|
||||
int start = 0;
|
||||
List<Integer> cellStarts = new ArrayList<>();
|
||||
for (Cell cell : row) {
|
||||
if (CollectionUtils.isEmpty(cell.getTextBlocks())) {
|
||||
continue;
|
||||
}
|
||||
addSectionToManualRedactions(cell.getTextBlocks(), manualRedactions, table.getHeadline(), sectionNumber.intValue());
|
||||
int cellStart = start;
|
||||
cell.getHeaderCells().forEach(headerCell -> {
|
||||
StringBuilder headerBuilder = new StringBuilder();
|
||||
headerCell.getTextBlocks().forEach(textBlock -> headerBuilder.append(textBlock.getText()));
|
||||
String headerName = headerBuilder.toString()
|
||||
.replaceAll("\n", "")
|
||||
.replaceAll(" ", "")
|
||||
.replaceAll("-", "");
|
||||
tabularData.put(headerName, new CellValue(cell.getTextBlocks(), cellStart));
|
||||
});
|
||||
|
||||
for (TextBlock textBlock : cell.getTextBlocks()) {
|
||||
// TODO avoid cell overlap merging.
|
||||
searchableRow.addAll(textBlock.getSequences());
|
||||
}
|
||||
cellStarts.add(cellStart);
|
||||
start = start + cell.toString().trim().length() + 1;
|
||||
}
|
||||
Set<Entity> rowEntities = findEntities(searchableRow, table.getHeadline(), sectionNumber.intValue(), dictionary, local);
|
||||
surroundingWordsService.addSurroundingText(rowEntities, searchableRow, dictionary, cellStarts);
|
||||
|
||||
sectionSearchableTextPairs.add(new SectionSearchableTextPair(Section.builder()
|
||||
.isLocal(local)
|
||||
.dictionaryTypes(dictionary.getTypes())
|
||||
.entities(hintsPerSectionNumber != null && hintsPerSectionNumber.containsKey(sectionNumber.intValue()) ? Stream
|
||||
.concat(rowEntities.stream(), hintsPerSectionNumber.get(sectionNumber.intValue()).stream())
|
||||
.collect(Collectors.toSet()) : rowEntities)
|
||||
.text(searchableRow.getAsStringWithLinebreaks())
|
||||
.searchText(searchableRow.toString())
|
||||
.headline(table.getHeadline())
|
||||
.sectionNumber(sectionNumber.intValue())
|
||||
.tabularData(tabularData)
|
||||
.searchableText(searchableRow)
|
||||
.dictionary(dictionary)
|
||||
.build(), searchableRow));
|
||||
|
||||
sectionNumber.incrementAndGet();
|
||||
}
|
||||
return sectionSearchableTextPairs;
|
||||
}
|
||||
|
||||
|
||||
private List<SectionSearchableTextPair> processTableAsOneText(Table table, ManualRedactions manualRedactions,
|
||||
AtomicInteger sectionNumber, Dictionary dictionary,
|
||||
boolean local,
|
||||
Map<Integer, Set<Entity>> hintsPerSectionNumber) {
|
||||
|
||||
List<SectionSearchableTextPair> sectionSearchableTextPairs = new ArrayList<>();
|
||||
SearchableText entireTableText = new SearchableText();
|
||||
for (List<Cell> row : table.getRows()) {
|
||||
for (Cell cell : row) {
|
||||
if (CollectionUtils.isEmpty(cell.getTextBlocks())) {
|
||||
continue;
|
||||
}
|
||||
for (TextBlock textBlock : cell.getTextBlocks()) {
|
||||
entireTableText.addAll(textBlock.getSequences());
|
||||
}
|
||||
addSectionToManualRedactions(cell.getTextBlocks(), manualRedactions, table.getHeadline(), sectionNumber.intValue());
|
||||
}
|
||||
}
|
||||
|
||||
return entities;
|
||||
Set<Entity> rowEntities = findEntities(entireTableText, table.getHeadline(), sectionNumber.intValue(), dictionary, local);
|
||||
surroundingWordsService.addSurroundingText(rowEntities, entireTableText, dictionary);
|
||||
|
||||
sectionSearchableTextPairs.add(new SectionSearchableTextPair(Section.builder()
|
||||
.isLocal(local)
|
||||
.dictionaryTypes(dictionary.getTypes())
|
||||
.entities(hintsPerSectionNumber != null && hintsPerSectionNumber.containsKey(sectionNumber.intValue()) ? Stream
|
||||
.concat(rowEntities.stream(), hintsPerSectionNumber.get(sectionNumber.intValue()).stream())
|
||||
.collect(Collectors.toSet()) : rowEntities)
|
||||
.text(entireTableText.getAsStringWithLinebreaks())
|
||||
.searchText(entireTableText.toString())
|
||||
.headline(table.getHeadline())
|
||||
.sectionNumber(sectionNumber.intValue())
|
||||
.searchableText(entireTableText)
|
||||
.dictionary(dictionary)
|
||||
.build(), entireTableText));
|
||||
|
||||
return sectionSearchableTextPairs;
|
||||
}
|
||||
|
||||
|
||||
private Set<Entity> findEntities(SearchableText searchableText, String headline, int sectionNumber) {
|
||||
private SectionSearchableTextPair processText(Paragraph paragraph, ManualRedactions manualRedactions,
|
||||
AtomicInteger sectionNumber, Dictionary dictionary, boolean local,
|
||||
Map<Integer, Set<Entity>> hintsPerSectionNumber) {
|
||||
|
||||
SearchableText searchableText = paragraph.getSearchableText();
|
||||
addSectionToManualRedactions(paragraph.getTextBlocks(), manualRedactions, paragraph.getHeadline(), sectionNumber
|
||||
.intValue());
|
||||
Set<Entity> entities = findEntities(searchableText, paragraph.getHeadline(), sectionNumber.intValue(), dictionary, local);
|
||||
surroundingWordsService.addSurroundingText(entities, searchableText, dictionary);
|
||||
|
||||
return new SectionSearchableTextPair(Section.builder()
|
||||
.isLocal(local)
|
||||
.dictionaryTypes(dictionary.getTypes())
|
||||
.entities(hintsPerSectionNumber != null && hintsPerSectionNumber.containsKey(sectionNumber.intValue()) ? Stream
|
||||
.concat(entities.stream(), hintsPerSectionNumber.get(sectionNumber.intValue()).stream())
|
||||
.collect(Collectors.toSet()) : entities)
|
||||
.text(searchableText.getAsStringWithLinebreaks())
|
||||
.searchText(searchableText.toString())
|
||||
.headline(paragraph.getHeadline())
|
||||
.sectionNumber(sectionNumber.intValue())
|
||||
.searchableText(searchableText)
|
||||
.dictionary(dictionary)
|
||||
.build(), searchableText);
|
||||
}
|
||||
|
||||
|
||||
private Set<Entity> findEntities(SearchableText searchableText, String headline, int sectionNumber,
|
||||
Dictionary dictionary, boolean local) {
|
||||
|
||||
Set<Entity> found = new HashSet<>();
|
||||
String searchableString = searchableText.toString();
|
||||
@@ -149,63 +287,20 @@ public class EntityRedactionService {
|
||||
}
|
||||
|
||||
String lowercaseInputString = searchableString.toLowerCase();
|
||||
for (Map.Entry<String, Set<String>> entry : dictionaryService.getDictionary().entrySet()) {
|
||||
if (dictionaryService.getCaseInsensitiveTypes().contains(entry.getKey())) {
|
||||
found.addAll(find(lowercaseInputString, entry.getValue(), entry.getKey(), headline, sectionNumber));
|
||||
for (DictionaryModel model : dictionary.getDictionaryModels()) {
|
||||
if (model.isCaseInsensitive()) {
|
||||
found.addAll(EntitySearchUtils.find(lowercaseInputString, model.getValues(local), model.getType(), headline, sectionNumber, local));
|
||||
} else {
|
||||
found.addAll(find(searchableString, entry.getValue(), entry.getKey(), headline, sectionNumber));
|
||||
found.addAll(EntitySearchUtils.find(searchableString, model.getValues(local), model.getType(), headline, sectionNumber, local));
|
||||
}
|
||||
}
|
||||
|
||||
removeEntitiesContainedInLarger(found);
|
||||
|
||||
return found;
|
||||
|
||||
return EntitySearchUtils.clearAndFindPositions(found, searchableText, dictionary);
|
||||
}
|
||||
|
||||
|
||||
private Set<Entity> find(String inputString, Set<String> values, String type, String headline, int sectionNumber) {
|
||||
|
||||
Set<Entity> found = new HashSet<>();
|
||||
for (String value : values) {
|
||||
int startIndex;
|
||||
int stopIndex = 0;
|
||||
do {
|
||||
startIndex = inputString.indexOf(value, stopIndex);
|
||||
stopIndex = startIndex + value.length();
|
||||
|
||||
if (startIndex > -1 && (startIndex == 0 || Character.isWhitespace(inputString.charAt(startIndex - 1)) || isSeparator(inputString
|
||||
.charAt(startIndex - 1))) && (stopIndex == inputString.length() || isSeparator(inputString.charAt(stopIndex)))) {
|
||||
found.add(new Entity(inputString.substring(startIndex, stopIndex), type, startIndex, stopIndex, headline, sectionNumber));
|
||||
}
|
||||
} while (startIndex > -1);
|
||||
}
|
||||
return found;
|
||||
}
|
||||
|
||||
|
||||
private boolean isSeparator(char c) {
|
||||
|
||||
return Character.isWhitespace(c) || Pattern.matches("\\p{Punct}", String.valueOf(c)) || c == '\"' || c == '‘' || c == '’';
|
||||
}
|
||||
|
||||
|
||||
public void removeEntitiesContainedInLarger(Set<Entity> entities) {
|
||||
|
||||
List<Entity> wordsToRemove = new ArrayList<>();
|
||||
for (Entity word : entities) {
|
||||
for (Entity inner : entities) {
|
||||
if (inner.getWord().length() < word.getWord()
|
||||
.length() && inner.getStart() >= word.getStart() && inner.getEnd() <= word.getEnd() && word != inner) {
|
||||
wordsToRemove.add(inner);
|
||||
}
|
||||
}
|
||||
}
|
||||
entities.removeAll(wordsToRemove);
|
||||
}
|
||||
|
||||
|
||||
private void addSectionToManualRedactions(List<TextBlock> textBlocks, ManualRedactions manualRedactions, String section, int sectionNumber) {
|
||||
private void addSectionToManualRedactions(List<TextBlock> textBlocks, ManualRedactions manualRedactions,
|
||||
String section, int sectionNumber) {
|
||||
|
||||
if (manualRedactions == null || manualRedactions.getEntriesToAdd().isEmpty()) {
|
||||
return;
|
||||
|
||||
+140
@@ -0,0 +1,140 @@
|
||||
package com.iqser.red.service.redaction.v1.server.redaction.service;
|
||||
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
|
||||
import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
|
||||
import lombok.RequiredArgsConstructor;
|
||||
import lombok.extern.slf4j.Slf4j;
|
||||
import org.springframework.stereotype.Service;
|
||||
|
||||
import java.util.List;
|
||||
import java.util.Set;
|
||||
|
||||
@Slf4j
|
||||
@Service
|
||||
@RequiredArgsConstructor
|
||||
public class SurroundingWordsService {
|
||||
|
||||
private final RedactionServiceSettings redactionServiceSettings;
|
||||
|
||||
|
||||
public void addSurroundingText(Set<Entity> entities, SearchableText searchableText, Dictionary dictionary) {
|
||||
|
||||
if (entities.isEmpty()) {
|
||||
return;
|
||||
}
|
||||
|
||||
try {
|
||||
for (Entity entity : entities) {
|
||||
|
||||
if (dictionary.isHint(entity.getType())) {
|
||||
continue;
|
||||
}
|
||||
findSurroundingWords(entity, searchableText.toString(), entity.getStart(), entity.getEnd());
|
||||
}
|
||||
} catch (Exception e) {
|
||||
log.warn("Could not get surrounding text!");
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
public void addSurroundingText(Set<Entity> entities, SearchableText searchableText, Dictionary dictionary,
|
||||
List<Integer> cellstarts) {
|
||||
|
||||
if (entities.isEmpty()) {
|
||||
return;
|
||||
}
|
||||
|
||||
try {
|
||||
String searchableString = searchableText.toString();
|
||||
|
||||
if (cellstarts != null) {
|
||||
for (int i = 0; i < cellstarts.size(); i++) {
|
||||
|
||||
int startOffset = cellstarts.get(i);
|
||||
int endOffset = -1;
|
||||
|
||||
if (i + 1 < cellstarts.size()) {
|
||||
endOffset = cellstarts.get(i + 1);
|
||||
} else {
|
||||
endOffset = searchableString.length() - 1;
|
||||
}
|
||||
|
||||
String text = searchableString.substring(startOffset, endOffset);
|
||||
for (Entity entity : entities) {
|
||||
|
||||
if (dictionary.isHint(entity.getType())) {
|
||||
continue;
|
||||
}
|
||||
|
||||
if (entity.getStart() >= startOffset && entity.getEnd() <= endOffset) {
|
||||
int entityStartOffset = entity.getStart() - startOffset;
|
||||
int entityEndOffset = entity.getEnd() - startOffset;
|
||||
findSurroundingWords(entity, text, entityStartOffset, entityEndOffset);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
} catch (Exception e) {
|
||||
log.warn("Could not get surrounding text!");
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
private void findSurroundingWords(Entity entity, String text, int entityStartOffset, int entityEndOffset) {
|
||||
|
||||
int offsetBefore = entityStartOffset - redactionServiceSettings.getSurroundingWordsOffsetWindow() < 0 ? 0 : entityStartOffset - redactionServiceSettings
|
||||
.getSurroundingWordsOffsetWindow();
|
||||
String textBefore = text.substring(offsetBefore, entityStartOffset);
|
||||
if (!textBefore.isBlank()) {
|
||||
String[] wordsBefore = textBefore.split(" ");
|
||||
int numberOfWordsBefore = wordsBefore.length > redactionServiceSettings.getNumberOfSurroundingWords() ? redactionServiceSettings
|
||||
.getNumberOfSurroundingWords() : wordsBefore.length;
|
||||
if (wordsBefore.length > 0) {
|
||||
entity.setTextBefore(concatWordsBefore(wordsBefore, numberOfWordsBefore, textBefore.endsWith(" ")));
|
||||
}
|
||||
}
|
||||
|
||||
int endOffset = entityEndOffset + redactionServiceSettings.getSurroundingWordsOffsetWindow() > text.length() ? text
|
||||
.length() : entityEndOffset + redactionServiceSettings.getSurroundingWordsOffsetWindow();
|
||||
String textAfter = text.substring(entityEndOffset, endOffset);
|
||||
if (!textAfter.isBlank()) {
|
||||
String[] wordsAfter = textAfter.split(" ");
|
||||
int numberOfWordsAfter = wordsAfter.length > redactionServiceSettings.getNumberOfSurroundingWords() ? redactionServiceSettings
|
||||
.getNumberOfSurroundingWords() : wordsAfter.length;
|
||||
if (wordsAfter.length > 0) {
|
||||
entity.setTextAfter(concatWordsAfter(wordsAfter, numberOfWordsAfter, textAfter.startsWith(" ")));
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
private String concatWordsBefore(String[] words, int number, boolean endWithSpace) {
|
||||
|
||||
StringBuilder sb = new StringBuilder();
|
||||
|
||||
int startNumber = words.length > number ? words.length - number : 0;
|
||||
|
||||
for (int i = startNumber; i < words.length; i++) {
|
||||
sb.append(words[i]).append(" ");
|
||||
}
|
||||
|
||||
String result = sb.toString().trim();
|
||||
return endWithSpace ? result + " " : result;
|
||||
}
|
||||
|
||||
|
||||
private String concatWordsAfter(String[] words, int number, boolean startWithSpace) {
|
||||
|
||||
StringBuilder sb = new StringBuilder();
|
||||
|
||||
for (int i = 0; i < number; i++) {
|
||||
sb.append(words[i]).append(" ");
|
||||
}
|
||||
|
||||
String result = sb.toString().trim();
|
||||
return startWithSpace ? " " + result : result;
|
||||
}
|
||||
|
||||
}
|
||||
+107
@@ -0,0 +1,107 @@
|
||||
package com.iqser.red.service.redaction.v1.server.redaction.utils;
|
||||
|
||||
import java.util.ArrayList;
|
||||
import java.util.Comparator;
|
||||
import java.util.HashMap;
|
||||
import java.util.HashSet;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
import java.util.Set;
|
||||
import java.util.regex.Pattern;
|
||||
import java.util.stream.Collectors;
|
||||
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.EntityPositionSequence;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
|
||||
|
||||
import lombok.experimental.UtilityClass;
|
||||
import lombok.extern.slf4j.Slf4j;
|
||||
|
||||
@Slf4j
|
||||
@UtilityClass
|
||||
public class EntitySearchUtils {
|
||||
|
||||
public Set<Entity> find(String inputString, Set<String> values, String type, String headline, int sectionNumber,
|
||||
boolean local) {
|
||||
|
||||
Set<Entity> found = new HashSet<>();
|
||||
|
||||
for (String value : values) {
|
||||
|
||||
String cleanValue = value.trim();
|
||||
|
||||
if (cleanValue.length() <= 2) {
|
||||
continue;
|
||||
}
|
||||
|
||||
int startIndex;
|
||||
int stopIndex = 0;
|
||||
do {
|
||||
startIndex = inputString.indexOf(cleanValue, stopIndex);
|
||||
stopIndex = startIndex + cleanValue.length();
|
||||
|
||||
if (startIndex > -1 && (startIndex == 0 || Character.isWhitespace(inputString.charAt(startIndex - 1)) || isSeparator(inputString
|
||||
.charAt(startIndex - 1))) && (stopIndex == inputString.length() || isSeparator(inputString.charAt(stopIndex)))) {
|
||||
found.add(new Entity(inputString.substring(startIndex, stopIndex), type, startIndex, stopIndex, headline, sectionNumber, !local));
|
||||
}
|
||||
} while (startIndex > -1);
|
||||
}
|
||||
return found;
|
||||
}
|
||||
|
||||
|
||||
private boolean isSeparator(char c) {
|
||||
|
||||
return Character.isWhitespace(c) || Pattern.matches("\\p{Punct}", String.valueOf(c)) || c == '\"' || c == '‘' || c == '’';
|
||||
}
|
||||
|
||||
|
||||
public Set<Entity> clearAndFindPositions(Set<Entity> entities, SearchableText text, Dictionary dictionary) {
|
||||
|
||||
Map<String, List<Entity>> entitiesByWord = new HashMap<>();
|
||||
|
||||
for (Entity entity : entities) {
|
||||
entitiesByWord.computeIfAbsent(entity.getWord(), (x) -> new ArrayList<>()).add(entity);
|
||||
}
|
||||
|
||||
for (String word : entitiesByWord.keySet()) {
|
||||
|
||||
List<Entity> orderedEntities = entitiesByWord.get(word)
|
||||
.stream()
|
||||
.sorted(Comparator.comparing(Entity::getStart))
|
||||
.collect(Collectors.toList());
|
||||
Entity firstEntity = orderedEntities.get(0);
|
||||
List<EntityPositionSequence> positionSequences = text.getSequences(firstEntity.getWord().trim(), dictionary.isCaseInsensitiveDictionary(firstEntity
|
||||
.getType()), firstEntity.getTargetSequences());
|
||||
|
||||
for (int i = 0; i <= orderedEntities.size() - 1; i++) {
|
||||
try {
|
||||
orderedEntities.get(i).setPositionSequences(List.of(positionSequences.get(i)));
|
||||
} catch (Exception e) {
|
||||
log.warn("Mismatch between EntityPositionSequence and found Entity!");
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
removeEntitiesContainedInLarger(entities);
|
||||
|
||||
return entities;
|
||||
}
|
||||
|
||||
|
||||
public void removeEntitiesContainedInLarger(Set<Entity> entities) {
|
||||
|
||||
List<Entity> wordsToRemove = new ArrayList<>();
|
||||
for (Entity word : entities) {
|
||||
for (Entity inner : entities) {
|
||||
if (inner.getWord().length() < word.getWord()
|
||||
.length() && inner.getStart() >= word.getStart() && inner.getEnd() <= word.getEnd() && word != inner && word
|
||||
.getSectionNumber() == inner.getSectionNumber()) {
|
||||
wordsToRemove.add(inner);
|
||||
}
|
||||
}
|
||||
}
|
||||
entities.removeAll(wordsToRemove);
|
||||
}
|
||||
}
|
||||
+28
@@ -0,0 +1,28 @@
|
||||
package com.iqser.red.service.redaction.v1.server.redaction.utils;
|
||||
|
||||
import lombok.experimental.UtilityClass;
|
||||
|
||||
import java.util.HashMap;
|
||||
import java.util.Map;
|
||||
import java.util.regex.Pattern;
|
||||
|
||||
@UtilityClass
|
||||
public class Patterns {
|
||||
|
||||
public static Map<String, Pattern> patternCache = new HashMap<>();
|
||||
|
||||
public static Pattern AUTHOR_TABLE_SPITTER = Pattern.compile("((((di)|(van)) )|[A-Z]’)?[A-ZÄÖÜ][\\wäöüéèê]{2,}( ?[A-ZÄÖÜ]{1,2}\\.)+|((((di)|(van)) )|[A-Z]’)?[A-ZÄÖÜ][\\wäöüéèê]{2,}( ?[A-ZÄÖÜ]{1,2} )+");
|
||||
|
||||
|
||||
public Pattern getCompiledPattern(String pattern, boolean caseInsensitive) {
|
||||
|
||||
String patternKey = pattern + caseInsensitive;
|
||||
if (patternCache.containsKey(patternKey)) {
|
||||
return patternCache.get(patternKey);
|
||||
}
|
||||
Pattern compiledPattern = Pattern.compile(pattern, caseInsensitive ? Pattern.CASE_INSENSITIVE : 0);
|
||||
patternCache.put(patternKey, compiledPattern);
|
||||
return compiledPattern;
|
||||
}
|
||||
|
||||
}
|
||||
+1
-1
@@ -11,7 +11,7 @@ public class TextNormalizationUtilities {
|
||||
* @return Text without line-break hyphenation.
|
||||
*/
|
||||
public static String removeHyphenLineBreaks(String text) {
|
||||
return text.replaceAll("\\s(\\S+)[\\-\\u00AD]\\R|\n\r(.+ )", "\n$1$2");
|
||||
return text.replaceAll("([^\\s\\d\\-]{2,})[\\-\\u00AD]\\R|\n\r(.+ )", "$1$2");
|
||||
}
|
||||
|
||||
}
|
||||
+1
-1
@@ -39,7 +39,7 @@ public class SectionsBuilderService {
|
||||
|
||||
current.setPage(page.getPageNumber());
|
||||
|
||||
if (prev != null && current.getClassification().startsWith("H ") || !document.isHeadlines()) {
|
||||
if (prev != null && current.getClassification().startsWith("H ") && !prev.getClassification().startsWith("H ") || !document.isHeadlines()) {
|
||||
Paragraph chunkBlock = buildTextBlock(chunkWords, lastHeadline);
|
||||
chunkBlock.setHeadline(lastHeadline);
|
||||
if(document.isHeadlines()) {
|
||||
|
||||
+3
-6
@@ -7,12 +7,9 @@ import lombok.Data;
|
||||
@Data
|
||||
@ConfigurationProperties("redaction-service")
|
||||
public class RedactionServiceSettings {
|
||||
|
||||
private int numberOfSurroundingWords = 3;
|
||||
|
||||
/**
|
||||
* Tenant used in single tenant mode.
|
||||
*/
|
||||
private String defaultTenant = "iqser-id";
|
||||
|
||||
private int flattenImageDpi = 100;
|
||||
private int surroundingWordsOffsetWindow = 100;
|
||||
|
||||
}
|
||||
+8
@@ -28,4 +28,12 @@ public abstract class AbstractTextContainer {
|
||||
return page == other.getPage() && this.minX <= other.getTopLeft().getX() && this.maxX >= other.getTopLeft().getX() + other.getWidth() && this.minY <= other.getTopLeft().getY() && this.maxY >= other.getTopLeft().getY() + other.getHeight();
|
||||
}
|
||||
|
||||
public float getHeight() {
|
||||
return maxY - minY;
|
||||
}
|
||||
|
||||
public float getWidth() {
|
||||
return maxX - minX;
|
||||
}
|
||||
|
||||
}
|
||||
+13
-2
@@ -2,6 +2,7 @@ package com.iqser.red.service.redaction.v1.server.tableextraction.model;
|
||||
|
||||
import java.awt.geom.Point2D;
|
||||
import java.util.ArrayList;
|
||||
import java.util.Iterator;
|
||||
import java.util.List;
|
||||
|
||||
import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
|
||||
@@ -41,8 +42,13 @@ public class Cell extends Rectangle {
|
||||
|
||||
StringBuilder sb = new StringBuilder();
|
||||
|
||||
for (TextBlock textBlock : textBlocks) {
|
||||
TextPositionSequence previous = null;
|
||||
|
||||
Iterator<TextBlock> itty = textBlocks.iterator();
|
||||
TextPositionSequence previous = null;
|
||||
while (itty.hasNext()) {
|
||||
|
||||
TextBlock textBlock = itty.next();
|
||||
|
||||
for (TextPositionSequence word : textBlock.getSequences()) {
|
||||
if (previous != null) {
|
||||
if (Math.abs(previous.getRotationAdjustedY() - word.getRotationAdjustedY()) > word.getTextHeight()) {
|
||||
@@ -54,6 +60,7 @@ public class Cell extends Rectangle {
|
||||
sb.append(word.toString());
|
||||
previous = word;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
return TextNormalizationUtilities.removeHyphenLineBreaks(sb.toString())
|
||||
@@ -61,4 +68,8 @@ public class Cell extends Rectangle {
|
||||
.replaceAll(" {2}", " ");
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
}
|
||||
+9
-10
@@ -30,12 +30,14 @@ public class TableExtractionService {
|
||||
|
||||
List<Cell> cells = findCells(cleanRulings.getHorizontal(), cleanRulings.getVertical());
|
||||
|
||||
List<TextBlock> toBeRemoved = new ArrayList<>();
|
||||
|
||||
for (AbstractTextContainer abstractTextContainer : page.getTextBlocks()) {
|
||||
TextBlock textBlock = (TextBlock) abstractTextContainer;
|
||||
for (Cell cell : cells) {
|
||||
if (cell.intersects(textBlock.getMinX(), textBlock.getMinY(), textBlock.getWidth(),
|
||||
textBlock.getHeight())) {
|
||||
if (cell.intersects(textBlock.getMinX(), textBlock.getMinY(), textBlock.getWidth(), textBlock.getHeight())) {
|
||||
cell.addTextBlock(textBlock);
|
||||
toBeRemoved.add(textBlock);
|
||||
break;
|
||||
}
|
||||
}
|
||||
@@ -44,7 +46,6 @@ public class TableExtractionService {
|
||||
cells = new ArrayList<>(new HashSet<>(cells));
|
||||
Utils.sort(cells, Rectangle.ILL_DEFINED_ORDER);
|
||||
|
||||
|
||||
List<Rectangle> spreadsheetAreas = findSpreadsheetsFromCells(cells).stream()
|
||||
.filter(r -> r.getWidth() > 0f && r.getHeight() > 0f)
|
||||
.collect(Collectors.toList());
|
||||
@@ -67,25 +68,23 @@ public class TableExtractionService {
|
||||
Iterator<AbstractTextContainer> itty = page.getTextBlocks().iterator();
|
||||
while (itty.hasNext()) {
|
||||
AbstractTextContainer textBlock = itty.next();
|
||||
if (table.contains(textBlock)) {
|
||||
if (position == -1) {
|
||||
position = page.getTextBlocks().indexOf(textBlock);
|
||||
}
|
||||
itty.remove();
|
||||
if (table.contains(textBlock) && position == -1) {
|
||||
position = page.getTextBlocks().indexOf(textBlock);
|
||||
}
|
||||
}
|
||||
if (position != -1) {
|
||||
page.getTextBlocks().add(position, table);
|
||||
}
|
||||
}
|
||||
|
||||
page.getTextBlocks().removeAll(toBeRemoved);
|
||||
}
|
||||
|
||||
|
||||
public List<Cell> findCells(List<Ruling> horizontalRulingLines, List<Ruling> verticalRulingLines) {
|
||||
|
||||
List<Cell> cellsFound = new ArrayList<>();
|
||||
Map<Point2D, Ruling[]> intersectionPoints = Ruling.findIntersections(horizontalRulingLines,
|
||||
verticalRulingLines);
|
||||
Map<Point2D, Ruling[]> intersectionPoints = Ruling.findIntersections(horizontalRulingLines, verticalRulingLines);
|
||||
List<Point2D> intersectionPointsList = new ArrayList<>(intersectionPoints.keySet());
|
||||
intersectionPointsList.sort(POINT_COMPARATOR);
|
||||
|
||||
|
||||
+111
@@ -0,0 +1,111 @@
|
||||
package com.iqser.red.service.redaction.v1.server.tableextraction.utils;
|
||||
|
||||
import java.util.ArrayDeque;
|
||||
import java.util.Comparator;
|
||||
import java.util.Deque;
|
||||
import java.util.List;
|
||||
|
||||
/**
|
||||
* Copied and minimal modified from PDFBox.
|
||||
*/
|
||||
public final class QuickSort {
|
||||
|
||||
private QuickSort() {
|
||||
|
||||
}
|
||||
|
||||
|
||||
private static final Comparator<? extends Comparable> OBJCOMP = new Comparator<Comparable>() {
|
||||
@Override
|
||||
public int compare(Comparable object1, Comparable object2) {
|
||||
|
||||
return object1.compareTo(object2);
|
||||
}
|
||||
};
|
||||
|
||||
|
||||
/**
|
||||
* Sorts the given list using the given comparator.
|
||||
*
|
||||
* @param <T> type of the objects to be sorted.
|
||||
* @param list list to be sorted
|
||||
* @param cmp comparator used to compare the objects within the list
|
||||
*/
|
||||
public static <T> void sort(List<T> list, Comparator<? super T> cmp) {
|
||||
|
||||
int size = list.size();
|
||||
if (size < 2) {
|
||||
return;
|
||||
}
|
||||
quicksort(list, cmp);
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Sorts the given list using compareTo as comparator.
|
||||
*
|
||||
* @param <T> type of the objects to be sorted.
|
||||
* @param list list to be sorted
|
||||
*/
|
||||
public static <T extends Comparable> void sort(List<T> list) {
|
||||
|
||||
sort(list, (Comparator<T>) OBJCOMP);
|
||||
}
|
||||
|
||||
|
||||
private static <T> void quicksort(List<T> list, Comparator<? super T> cmp) {
|
||||
|
||||
Deque<Integer> stack = new ArrayDeque<Integer>();
|
||||
stack.push(0);
|
||||
stack.push(list.size());
|
||||
while (!stack.isEmpty()) {
|
||||
int right = stack.pop();
|
||||
int left = stack.pop();
|
||||
if (right - left < 2) {
|
||||
continue;
|
||||
}
|
||||
int p = left + ((right - left) / 2);
|
||||
p = partition(list, cmp, p, left, right);
|
||||
|
||||
stack.push(p + 1);
|
||||
stack.push(right);
|
||||
|
||||
stack.push(left);
|
||||
stack.push(p);
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
private static <T> int partition(List<T> list, Comparator<? super T> cmp, int p, int start, int end) {
|
||||
|
||||
int l = start;
|
||||
int h = end - 2;
|
||||
T piv = list.get(p);
|
||||
swap(list, p, end - 1);
|
||||
|
||||
while (l < h) {
|
||||
if (cmp.compare(list.get(l), piv) <= 0) {
|
||||
l++;
|
||||
} else if (cmp.compare(piv, list.get(h)) <= 0) {
|
||||
h--;
|
||||
} else {
|
||||
swap(list, l, h);
|
||||
}
|
||||
}
|
||||
int idx = h;
|
||||
if (cmp.compare(list.get(h), piv) < 0) {
|
||||
idx++;
|
||||
}
|
||||
swap(list, end - 1, idx);
|
||||
return idx;
|
||||
}
|
||||
|
||||
|
||||
private static <T> void swap(List<T> list, int i, int j) {
|
||||
|
||||
T tmp = list.get(i);
|
||||
list.set(i, list.get(j));
|
||||
list.set(j, tmp);
|
||||
}
|
||||
|
||||
}
|
||||
+11
-6
@@ -1,7 +1,6 @@
|
||||
package com.iqser.red.service.redaction.v1.server.tableextraction.utils;
|
||||
|
||||
import java.math.BigDecimal;
|
||||
import java.util.Collections;
|
||||
import java.util.Comparator;
|
||||
import java.util.List;
|
||||
|
||||
@@ -13,23 +12,29 @@ public class Utils {
|
||||
|
||||
private final static float EPSILON = 0.1f;
|
||||
|
||||
|
||||
public static boolean feq(double f1, double f2) {
|
||||
|
||||
return (Math.abs(f1 - f2) < EPSILON);
|
||||
}
|
||||
|
||||
|
||||
public static float round(double d, int decimalPlace) {
|
||||
|
||||
BigDecimal bd = BigDecimal.valueOf(d);
|
||||
bd = bd.setScale(decimalPlace, BigDecimal.ROUND_HALF_UP);
|
||||
return bd.floatValue();
|
||||
}
|
||||
|
||||
public static <T> void sort(List<T> list, Comparator<? super T> comparator) {
|
||||
|
||||
public static <T> void sort(List<T> list, Comparator<? super T> comparator) {
|
||||
|
||||
try {
|
||||
Collections.sort(list, comparator);
|
||||
} catch (IllegalArgumentException e){
|
||||
//TODO Figure out why this happens.
|
||||
QuickSort.sort(list, comparator);
|
||||
} catch (IllegalArgumentException e) {
|
||||
// This should not happen since we use QuickSort from PDFBox
|
||||
log.warn(e.getMessage());
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
+94
-71
@@ -1,14 +1,27 @@
|
||||
package com.iqser.red.service.redaction.v1.server.visualization.service;
|
||||
|
||||
import java.awt.Color;
|
||||
import java.io.IOException;
|
||||
import java.util.ArrayList;
|
||||
import java.util.GregorianCalendar;
|
||||
import java.util.HashSet;
|
||||
import java.util.List;
|
||||
import java.util.Set;
|
||||
import java.util.stream.Collectors;
|
||||
|
||||
import com.iqser.red.service.redaction.v1.model.CellRectangle;
|
||||
import com.iqser.red.service.redaction.v1.model.Comment;
|
||||
import com.iqser.red.service.redaction.v1.model.IdRemoval;
|
||||
import com.iqser.red.service.redaction.v1.model.ManualRedactionEntry;
|
||||
import com.iqser.red.service.redaction.v1.model.ManualRedactionType;
|
||||
import com.iqser.red.service.redaction.v1.model.ManualRedactions;
|
||||
import com.iqser.red.service.redaction.v1.model.Point;
|
||||
import com.iqser.red.service.redaction.v1.model.Rectangle;
|
||||
import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
|
||||
import com.iqser.red.service.redaction.v1.model.SectionRectangle;
|
||||
import com.iqser.red.service.redaction.v1.model.Status;
|
||||
import com.iqser.red.service.redaction.v1.server.classification.model.Document;
|
||||
import com.iqser.red.service.redaction.v1.server.classification.model.Paragraph;
|
||||
import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
|
||||
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.EntityPositionSequence;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.service.DictionaryService;
|
||||
import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
|
||||
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Cell;
|
||||
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
|
||||
import lombok.RequiredArgsConstructor;
|
||||
import org.apache.commons.collections4.CollectionUtils;
|
||||
import org.apache.pdfbox.pdmodel.PDDocument;
|
||||
import org.apache.pdfbox.pdmodel.PDPage;
|
||||
@@ -23,26 +36,14 @@ import org.apache.pdfbox.pdmodel.interactive.annotation.PDAnnotationTextMarkup;
|
||||
import org.apache.pdfbox.text.TextPosition;
|
||||
import org.springframework.stereotype.Service;
|
||||
|
||||
import com.iqser.red.service.redaction.v1.model.Comment;
|
||||
import com.iqser.red.service.redaction.v1.model.IdRemoval;
|
||||
import com.iqser.red.service.redaction.v1.model.ManualRedactionEntry;
|
||||
import com.iqser.red.service.redaction.v1.model.ManualRedactionType;
|
||||
import com.iqser.red.service.redaction.v1.model.ManualRedactions;
|
||||
import com.iqser.red.service.redaction.v1.model.Rectangle;
|
||||
import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
|
||||
import com.iqser.red.service.redaction.v1.model.Status;
|
||||
import com.iqser.red.service.redaction.v1.server.classification.model.Document;
|
||||
import com.iqser.red.service.redaction.v1.server.classification.model.Paragraph;
|
||||
import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
|
||||
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.EntityPositionSequence;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.service.DictionaryService;
|
||||
import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
|
||||
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Cell;
|
||||
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
|
||||
|
||||
import lombok.RequiredArgsConstructor;
|
||||
import java.awt.Color;
|
||||
import java.io.IOException;
|
||||
import java.util.ArrayList;
|
||||
import java.util.GregorianCalendar;
|
||||
import java.util.HashSet;
|
||||
import java.util.List;
|
||||
import java.util.Set;
|
||||
import java.util.stream.Collectors;
|
||||
|
||||
@Service
|
||||
@RequiredArgsConstructor
|
||||
@@ -52,7 +53,7 @@ public class AnnotationHighlightService {
|
||||
|
||||
|
||||
public void highlight(PDDocument document, Document classifiedDoc, boolean flatRedaction,
|
||||
ManualRedactions manualRedactions) throws IOException {
|
||||
ManualRedactions manualRedactions, String ruleSetId) throws IOException {
|
||||
|
||||
Set<Integer> manualRedactionPages = getManualRedactionPages(manualRedactions);
|
||||
|
||||
@@ -63,11 +64,11 @@ public class AnnotationHighlightService {
|
||||
drawSectionFrames(document, classifiedDoc, flatRedaction, pdPage, page);
|
||||
|
||||
if (classifiedDoc.getEntities().get(page) != null) {
|
||||
addAnnotations(pdPage, classifiedDoc, flatRedaction, manualRedactions, page);
|
||||
addAnnotations(pdPage, classifiedDoc, flatRedaction, manualRedactions, page, ruleSetId);
|
||||
}
|
||||
|
||||
if (manualRedactionPages.contains(page)) {
|
||||
addManualAnnotations(pdPage, classifiedDoc, manualRedactions, page);
|
||||
addManualAnnotations(pdPage, classifiedDoc, manualRedactions, page, ruleSetId);
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -91,7 +92,7 @@ public class AnnotationHighlightService {
|
||||
|
||||
|
||||
private void addAnnotations(PDPage pdPage, Document classifiedDoc, boolean flatRedaction,
|
||||
ManualRedactions manualRedactions, int page) throws IOException {
|
||||
ManualRedactions manualRedactions, int page, String ruleSetId) throws IOException {
|
||||
|
||||
List<PDAnnotation> annotations = pdPage.getAnnotations();
|
||||
|
||||
@@ -101,17 +102,16 @@ public class AnnotationHighlightService {
|
||||
entityLoop:
|
||||
for (Entity entity : classifiedDoc.getEntities().get(page)) {
|
||||
|
||||
if (flatRedaction && !isRedactionType(entity)) {
|
||||
if (flatRedaction && !isRedactionType(entity, ruleSetId)) {
|
||||
continue;
|
||||
}
|
||||
|
||||
|
||||
boolean requestedToRemove = false;
|
||||
List<Comment> comments = null;
|
||||
|
||||
for (EntityPositionSequence entityPositionSequence : entity.getPositionSequences()) {
|
||||
|
||||
RedactionLogEntry redactionLogEntry = createRedactionLogEntry(entity);
|
||||
RedactionLogEntry redactionLogEntry = createRedactionLogEntry(entity, ruleSetId);
|
||||
if (processedIds.contains(entityPositionSequence.getId())) {
|
||||
|
||||
// TODO refactor this outer loop jump as soon as we have the time.
|
||||
@@ -134,6 +134,8 @@ public class AnnotationHighlightService {
|
||||
requestedToRemove = true;
|
||||
manualOverrideReason = entity.getRedactionReason() + ", requested to remove";
|
||||
redactionLogEntry.setStatus(Status.REQUESTED);
|
||||
} else {
|
||||
redactionLogEntry.setStatus(Status.DECLINED);
|
||||
}
|
||||
|
||||
entity.setRedactionReason(manualOverrideReason != null ? manualOverrideReason : entity.getRedactionReason());
|
||||
@@ -157,7 +159,7 @@ public class AnnotationHighlightService {
|
||||
|
||||
redactionLogEntry.getPositions().addAll(rectanglesPerLine);
|
||||
|
||||
annotations.addAll(createAnnotation(rectanglesPerLine, entityPositionSequence.getId(), createAnnotationContent(entity), getColor(entity, requestedToRemove), comments, !isHint(entity)));
|
||||
annotations.addAll(createAnnotation(rectanglesPerLine, entityPositionSequence.getId(), createAnnotationContent(entity), getColor(entity, ruleSetId, requestedToRemove), comments, !isHint(entity, ruleSetId)));
|
||||
}
|
||||
|
||||
redactionLogEntry.setId(entityPositionSequence.getId());
|
||||
@@ -168,7 +170,6 @@ public class AnnotationHighlightService {
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
@@ -200,7 +201,7 @@ public class AnnotationHighlightService {
|
||||
|
||||
|
||||
private void addManualAnnotations(PDPage pdPage, Document classifiedDoc, ManualRedactions manualRedactions,
|
||||
int page) throws IOException {
|
||||
int page, String ruleSetId) throws IOException {
|
||||
|
||||
if (manualRedactions == null) {
|
||||
return;
|
||||
@@ -212,7 +213,7 @@ public class AnnotationHighlightService {
|
||||
|
||||
String id = manualRedactionEntry.getId();
|
||||
|
||||
RedactionLogEntry redactionLogEntry = createRedactionLogEntry(manualRedactionEntry, id);
|
||||
RedactionLogEntry redactionLogEntry = createRedactionLogEntry(manualRedactionEntry, id, ruleSetId);
|
||||
|
||||
List<Rectangle> rectanglesOnPage = new ArrayList<>();
|
||||
for (Rectangle rectangle : manualRedactionEntry.getPositions()) {
|
||||
@@ -224,7 +225,7 @@ public class AnnotationHighlightService {
|
||||
|
||||
if (!rectanglesOnPage.isEmpty() && !approvedAndShouldBeInDictionary(manualRedactionEntry)) {
|
||||
annotations.addAll(createAnnotation(rectanglesOnPage, id, createAnnotationContent(manualRedactionEntry), getColorForManualAdd(manualRedactionEntry
|
||||
.getType(), manualRedactionEntry.getStatus()), manualRedactions.getComments().get(id), true));
|
||||
.getType(), ruleSetId, manualRedactionEntry.getStatus()), manualRedactions.getComments().get(id), true));
|
||||
classifiedDoc.getRedactionLogEntities().add(redactionLogEntry);
|
||||
}
|
||||
}
|
||||
@@ -237,11 +238,11 @@ public class AnnotationHighlightService {
|
||||
}
|
||||
|
||||
|
||||
private RedactionLogEntry createRedactionLogEntry(ManualRedactionEntry manualRedactionEntry, String id) {
|
||||
private RedactionLogEntry createRedactionLogEntry(ManualRedactionEntry manualRedactionEntry, String id, String ruleSetId) {
|
||||
|
||||
return RedactionLogEntry.builder()
|
||||
.id(id)
|
||||
.color(getColor(manualRedactionEntry.getType()))
|
||||
.color(getColor(manualRedactionEntry.getType(), ruleSetId))
|
||||
.reason(manualRedactionEntry.getReason())
|
||||
.legalBasis(manualRedactionEntry.getLegalBasis())
|
||||
.value(manualRedactionEntry.getValue())
|
||||
@@ -253,22 +254,28 @@ public class AnnotationHighlightService {
|
||||
.manual(true)
|
||||
.status(manualRedactionEntry.getStatus())
|
||||
.manualRedactionType(ManualRedactionType.ADD)
|
||||
.isDictionaryEntry(false)
|
||||
.build();
|
||||
}
|
||||
|
||||
|
||||
private RedactionLogEntry createRedactionLogEntry(Entity entity) {
|
||||
private RedactionLogEntry createRedactionLogEntry(Entity entity, String ruleSetId) {
|
||||
|
||||
return RedactionLogEntry.builder()
|
||||
.color(getColor(entity, false))
|
||||
.color(getColor(entity, ruleSetId, false))
|
||||
.reason(entity.getRedactionReason())
|
||||
.legalBasis(entity.getLegalBasis())
|
||||
.value(entity.getWord())
|
||||
.type(entity.getType())
|
||||
.redacted(entity.isRedaction())
|
||||
.isHint(isHint(entity))
|
||||
.isHint(isHint(entity, ruleSetId))
|
||||
.isRecommendation(isRecommendation(entity, ruleSetId))
|
||||
.section(entity.getHeadline())
|
||||
.sectionNumber(entity.getSectionNumber())
|
||||
.matchedRule(entity.getMatchedRule())
|
||||
.isDictionaryEntry(entity.isDictionaryEntry())
|
||||
.textAfter(entity.getTextAfter())
|
||||
.textBefore(entity.getTextBefore())
|
||||
.build();
|
||||
}
|
||||
|
||||
@@ -380,54 +387,49 @@ public class AnnotationHighlightService {
|
||||
}
|
||||
|
||||
|
||||
private boolean isRedactionType(Entity entity) {
|
||||
private boolean isRedactionType(Entity entity, String ruleSetId) {
|
||||
|
||||
if (!entity.isRedaction()) {
|
||||
return false;
|
||||
}
|
||||
return !isHint(entity);
|
||||
return !isHint(entity, ruleSetId);
|
||||
}
|
||||
|
||||
|
||||
private float[] getColor(Entity entity, boolean requestedToRemove) {
|
||||
private float[] getColor(Entity entity, String ruleSetId, boolean requestedToRemove) {
|
||||
|
||||
if (requestedToRemove) {
|
||||
return dictionaryService.getRequestRemoveColor();
|
||||
return dictionaryService.getRequestRemoveColor(ruleSetId);
|
||||
}
|
||||
if (!entity.isRedaction() && !isHint(entity)) {
|
||||
return dictionaryService.getNotRedactedColor();
|
||||
if (!entity.isRedaction() && !isHint(entity, ruleSetId)) {
|
||||
return dictionaryService.getNotRedactedColor(ruleSetId);
|
||||
}
|
||||
if (!dictionaryService.getEntryColors().containsKey(entity.getType())) {
|
||||
return dictionaryService.getDefaultColor();
|
||||
}
|
||||
return dictionaryService.getEntryColors().get(entity.getType());
|
||||
return dictionaryService.getColor(entity.getType(), ruleSetId);
|
||||
}
|
||||
|
||||
|
||||
private float[] getColorForManualAdd(String type, Status status) {
|
||||
private float[] getColorForManualAdd(String type, String ruleSetId, Status status) {
|
||||
|
||||
if (status.equals(Status.REQUESTED)) {
|
||||
return dictionaryService.getRequestAddColor();
|
||||
return dictionaryService.getRequestAddColor(ruleSetId);
|
||||
} else if (status.equals(Status.DECLINED)) {
|
||||
return dictionaryService.getNotRedactedColor();
|
||||
return dictionaryService.getNotRedactedColor(ruleSetId);
|
||||
}
|
||||
return getColor(type);
|
||||
return getColor(type, ruleSetId);
|
||||
}
|
||||
|
||||
|
||||
private float[] getColor(String type) {
|
||||
|
||||
if (!dictionaryService.getEntryColors().containsKey(type)) {
|
||||
return dictionaryService.getDefaultColor();
|
||||
}
|
||||
return dictionaryService.getEntryColors().get(type);
|
||||
private float[] getColor(String type, String ruleSetId) {
|
||||
return dictionaryService.getColor(type, ruleSetId);
|
||||
}
|
||||
|
||||
|
||||
private boolean isHint(Entity entity) {
|
||||
private boolean isHint(Entity entity, String ruleSetId) {
|
||||
return dictionaryService.isHint(entity.getType(), ruleSetId);
|
||||
}
|
||||
|
||||
List<String> hintTypes = dictionaryService.getHintTypes();
|
||||
return CollectionUtils.isNotEmpty(hintTypes) && hintTypes.contains(entity.getType());
|
||||
private boolean isRecommendation(Entity entity, String ruleSetId) {
|
||||
return dictionaryService.isRecommendation(entity.getType(), ruleSetId);
|
||||
}
|
||||
|
||||
|
||||
@@ -449,11 +451,27 @@ public class AnnotationHighlightService {
|
||||
continue;
|
||||
}
|
||||
if (textBlock instanceof TextBlock) {
|
||||
|
||||
textBlock.setClassification((i + 1) + "/" + paragraph.getPageBlocks().size());
|
||||
visualizeTextBlock((TextBlock) textBlock, contentStream);
|
||||
|
||||
classifiedDoc.getSectionGrid()
|
||||
.getRectanglesPerPage()
|
||||
.computeIfAbsent(page, (x) -> new ArrayList<>())
|
||||
.add(new SectionRectangle(new Point(textBlock.getMinX(), textBlock.getMinY()), textBlock.getWidth(), textBlock
|
||||
.getHeight(), i + 1, paragraph.getPageBlocks().size()));
|
||||
|
||||
} else if (textBlock instanceof Table) {
|
||||
|
||||
textBlock.setClassification((i + 1) + "/" + paragraph.getPageBlocks().size());
|
||||
visualizeTable((Table) textBlock, contentStream);
|
||||
List<CellRectangle> cellRectangles = visualizeTable((Table) textBlock, contentStream);
|
||||
|
||||
classifiedDoc.getSectionGrid()
|
||||
.getRectanglesPerPage()
|
||||
.computeIfAbsent(page, (x) -> new ArrayList<>())
|
||||
.add(new SectionRectangle(new Point(textBlock.getMinX(), textBlock.getMinY()), textBlock.getWidth(), textBlock
|
||||
.getHeight(), i + 1, paragraph.getPageBlocks().size(), cellRectangles));
|
||||
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -479,8 +497,9 @@ public class AnnotationHighlightService {
|
||||
}
|
||||
|
||||
|
||||
private void visualizeTable(Table table, PDPageContentStream contentStream) throws IOException {
|
||||
private List<CellRectangle> visualizeTable(Table table, PDPageContentStream contentStream) throws IOException {
|
||||
|
||||
List<CellRectangle> cellRectangles = new ArrayList<>();
|
||||
for (List<Cell> row : table.getRows()) {
|
||||
for (Cell cell : row) {
|
||||
|
||||
@@ -490,6 +509,8 @@ public class AnnotationHighlightService {
|
||||
contentStream.addRect((float) cell.getX(), (float) cell.getY(), (float) cell.getWidth(), (float) cell
|
||||
.getHeight());
|
||||
contentStream.stroke();
|
||||
cellRectangles.add(new CellRectangle(new Point((float) cell.getX(), (float) cell.getY()), (float) cell
|
||||
.getWidth(), (float) cell.getHeight()));
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -502,6 +523,8 @@ public class AnnotationHighlightService {
|
||||
contentStream.showText(table.getClassification());
|
||||
contentStream.endText();
|
||||
}
|
||||
|
||||
return cellRectangles;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
-68
@@ -1,68 +0,0 @@
|
||||
package com.iqser.red.service.redaction.v1.server.visualization.service;
|
||||
|
||||
import java.awt.image.BufferedImage;
|
||||
import java.io.IOException;
|
||||
|
||||
import org.apache.pdfbox.pdmodel.PDDocument;
|
||||
import org.apache.pdfbox.pdmodel.PDPage;
|
||||
import org.apache.pdfbox.pdmodel.PDPageContentStream;
|
||||
import org.apache.pdfbox.pdmodel.common.PDRectangle;
|
||||
import org.apache.pdfbox.pdmodel.graphics.image.LosslessFactory;
|
||||
import org.apache.pdfbox.pdmodel.graphics.image.PDImageXObject;
|
||||
import org.apache.pdfbox.rendering.ImageType;
|
||||
import org.apache.pdfbox.rendering.PDFRenderer;
|
||||
import org.springframework.stereotype.Service;
|
||||
|
||||
import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
|
||||
|
||||
import lombok.RequiredArgsConstructor;
|
||||
import lombok.extern.slf4j.Slf4j;
|
||||
|
||||
@Slf4j
|
||||
@Service
|
||||
@RequiredArgsConstructor
|
||||
public class PdfFlattenService {
|
||||
|
||||
private final RedactionServiceSettings settings;
|
||||
|
||||
public PDDocument flattenPDF(PDDocument sourceDoc) throws IOException {
|
||||
|
||||
PDDocument destDoc = new PDDocument();
|
||||
|
||||
PDFRenderer pdfRenderer = new PDFRenderer(sourceDoc);
|
||||
|
||||
final int pageCount = sourceDoc.getDocumentCatalog().getPages().getCount();
|
||||
|
||||
log.info(pageCount + " page" + (pageCount == 1 ? "" : "s") + " to flatten.");
|
||||
|
||||
for (int i = 0; i < pageCount; i += 1) {
|
||||
|
||||
log.info("Flattening page " + (i + 1) + " of " + pageCount + "...");
|
||||
|
||||
BufferedImage img = pdfRenderer.renderImageWithDPI(i, settings.getFlattenImageDpi(), ImageType.RGB);
|
||||
|
||||
log.info("Image rendered in memory (" + img.getWidth() + "x" + img.getHeight() + " " + settings.getFlattenImageDpi() + "DPI). Adding to PDF...");
|
||||
|
||||
PDPage imagePage = new PDPage(new PDRectangle(img.getWidth(), img.getHeight()));
|
||||
destDoc.addPage(imagePage);
|
||||
|
||||
PDImageXObject imgObj = LosslessFactory.createFromImage(destDoc, img);
|
||||
|
||||
PDPageContentStream imagePageContentStream = new PDPageContentStream(destDoc, imagePage);
|
||||
imagePageContentStream.drawImage(imgObj, 0, 0);
|
||||
|
||||
log.info("Image added successfully.");
|
||||
|
||||
imagePageContentStream.close();
|
||||
|
||||
img.flush();
|
||||
}
|
||||
|
||||
log.info("New flattened PDF created in memory.");
|
||||
|
||||
sourceDoc.close();
|
||||
|
||||
return destDoc;
|
||||
}
|
||||
|
||||
}
|
||||
+4
@@ -0,0 +1,4 @@
|
||||
server:
|
||||
port: 8083
|
||||
|
||||
configuration-service.url: "http://localhost:8081"
|
||||
@@ -1,6 +1,8 @@
|
||||
info:
|
||||
description: Redaction Service Server V1
|
||||
|
||||
configuration-service.url: "http://configuration-service-v1:8080"
|
||||
|
||||
server:
|
||||
port: 8080
|
||||
|
||||
|
||||
+183
-83
@@ -1,45 +1,5 @@
|
||||
package com.iqser.red.service.redaction.v1.server;
|
||||
|
||||
import static org.assertj.core.api.Assertions.assertThat;
|
||||
import static org.mockito.Mockito.when;
|
||||
import static org.springframework.boot.test.context.SpringBootTest.WebEnvironment.DEFINED_PORT;
|
||||
|
||||
import java.io.BufferedReader;
|
||||
import java.io.ByteArrayInputStream;
|
||||
import java.io.File;
|
||||
import java.io.FileInputStream;
|
||||
import java.io.FileOutputStream;
|
||||
import java.io.IOException;
|
||||
import java.io.InputStream;
|
||||
import java.io.InputStreamReader;
|
||||
import java.net.URL;
|
||||
import java.nio.charset.StandardCharsets;
|
||||
import java.time.OffsetDateTime;
|
||||
import java.util.ArrayList;
|
||||
import java.util.HashMap;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
import java.util.Set;
|
||||
import java.util.UUID;
|
||||
import java.util.stream.Collectors;
|
||||
|
||||
import org.apache.commons.io.IOUtils;
|
||||
import org.junit.Before;
|
||||
import org.junit.Test;
|
||||
import org.junit.runner.RunWith;
|
||||
import org.kie.api.KieServices;
|
||||
import org.kie.api.builder.KieBuilder;
|
||||
import org.kie.api.builder.KieFileSystem;
|
||||
import org.kie.api.builder.KieModule;
|
||||
import org.kie.api.runtime.KieContainer;
|
||||
import org.springframework.beans.factory.annotation.Autowired;
|
||||
import org.springframework.boot.test.context.SpringBootTest;
|
||||
import org.springframework.boot.test.context.TestConfiguration;
|
||||
import org.springframework.boot.test.mock.mockito.MockBean;
|
||||
import org.springframework.context.annotation.Bean;
|
||||
import org.springframework.core.io.ClassPathResource;
|
||||
import org.springframework.test.context.junit4.SpringRunner;
|
||||
|
||||
import com.iqser.red.service.configuration.v1.api.model.Colors;
|
||||
import com.iqser.red.service.configuration.v1.api.model.DictionaryResponse;
|
||||
import com.iqser.red.service.configuration.v1.api.model.RulesResponse;
|
||||
@@ -60,20 +20,68 @@ import com.iqser.red.service.redaction.v1.server.client.RulesClient;
|
||||
import com.iqser.red.service.redaction.v1.server.controller.RedactionController;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.utils.ResourceLoader;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.utils.TextNormalizationUtilities;
|
||||
import org.apache.commons.io.IOUtils;
|
||||
import org.junit.Before;
|
||||
import org.junit.Test;
|
||||
import org.junit.runner.RunWith;
|
||||
import org.kie.api.KieServices;
|
||||
import org.kie.api.builder.KieBuilder;
|
||||
import org.kie.api.builder.KieFileSystem;
|
||||
import org.kie.api.builder.KieModule;
|
||||
import org.kie.api.runtime.KieContainer;
|
||||
import org.springframework.beans.factory.annotation.Autowired;
|
||||
import org.springframework.boot.test.context.SpringBootTest;
|
||||
import org.springframework.boot.test.context.TestConfiguration;
|
||||
import org.springframework.boot.test.mock.mockito.MockBean;
|
||||
import org.springframework.context.annotation.Bean;
|
||||
import org.springframework.core.io.ClassPathResource;
|
||||
import org.springframework.test.context.junit4.SpringRunner;
|
||||
|
||||
import java.io.BufferedReader;
|
||||
import java.io.ByteArrayInputStream;
|
||||
import java.io.File;
|
||||
import java.io.FileInputStream;
|
||||
import java.io.FileOutputStream;
|
||||
import java.io.IOException;
|
||||
import java.io.InputStream;
|
||||
import java.io.InputStreamReader;
|
||||
import java.net.URL;
|
||||
import java.nio.charset.StandardCharsets;
|
||||
import java.time.OffsetDateTime;
|
||||
import java.util.ArrayList;
|
||||
import java.util.HashMap;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
import java.util.Set;
|
||||
import java.util.UUID;
|
||||
import java.util.stream.Collectors;
|
||||
|
||||
import static org.assertj.core.api.Assertions.assertThat;
|
||||
import static org.mockito.Mockito.when;
|
||||
import static org.springframework.boot.test.context.SpringBootTest.WebEnvironment.RANDOM_PORT;
|
||||
|
||||
@RunWith(SpringRunner.class)
|
||||
@SpringBootTest(webEnvironment = DEFINED_PORT)
|
||||
@SpringBootTest(webEnvironment = RANDOM_PORT)
|
||||
public class RedactionIntegrationTest {
|
||||
|
||||
private static final String RULES = loadFromClassPath("drools/rules.drl");
|
||||
private static final String VERTEBRATES_CODE = "vertebrate";
|
||||
private static final String ADDRESS_CODE = "address";
|
||||
private static final String NAME_CODE = "name";
|
||||
private static final String SPONSOR = "sponsor";
|
||||
private static final String VERTEBRATE = "vertebrate";
|
||||
private static final String ADDRESS = "CBI_address";
|
||||
private static final String AUTHOR = "CBI_author";
|
||||
private static final String SPONSOR = "CBI_sponsor";
|
||||
private static final String NO_REDACTION_INDICATOR = "no_redaction_indicator";
|
||||
private static final String REDACTION_INDICATOR = "redaction_indicator";
|
||||
private static final String HINT_ONLY = "hint_only";
|
||||
private static final String MUST_REDACT = "must_redact";
|
||||
private static final String PUBLISHED_INFORMATION = "published_information";
|
||||
private static final String TEST_METHOD = "test_method";
|
||||
|
||||
private static final String RECOMMENDATION_AUTHOR = "recommendation_CBI_author";
|
||||
private static final String RECOMMENDATION_ADDRESS = "recommendation_CBI_address";
|
||||
|
||||
private static final String FALSE_POSITIVE = "false_positive";
|
||||
|
||||
private static final String PII = "PII";
|
||||
|
||||
@Autowired
|
||||
private RedactionController redactionController;
|
||||
@@ -88,8 +96,11 @@ public class RedactionIntegrationTest {
|
||||
private final Map<String, String> typeColorMap = new HashMap<>();
|
||||
private final Map<String, Boolean> hintTypeMap = new HashMap<>();
|
||||
private final Map<String, Boolean> caseInSensitiveMap = new HashMap<>();
|
||||
private final Map<String, Boolean> recommendationTypeMap = new HashMap<>();
|
||||
private final Colors colors = new Colors();
|
||||
|
||||
private final static String TEST_RULESET_ID = "123";
|
||||
|
||||
@TestConfiguration
|
||||
public static class RedactionIntegrationTestConfiguration {
|
||||
|
||||
@@ -115,44 +126,50 @@ public class RedactionIntegrationTest {
|
||||
@Before
|
||||
public void stubClients() {
|
||||
|
||||
when(rulesClient.getVersion()).thenReturn(0L);
|
||||
when(rulesClient.getRules()).thenReturn(new RulesResponse(RULES));
|
||||
when(rulesClient.getVersion(TEST_RULESET_ID)).thenReturn(0L);
|
||||
when(rulesClient.getRules(TEST_RULESET_ID)).thenReturn(new RulesResponse(RULES));
|
||||
|
||||
loadDictionaryForTest();
|
||||
loadTypeForTest();
|
||||
when(dictionaryClient.getVersion()).thenReturn(0L);
|
||||
when(dictionaryClient.getAllTypes()).thenReturn(TypeResponse.builder().types(getTypeResponse()).build());
|
||||
when(dictionaryClient.getDictionaryForType(VERTEBRATES_CODE)).thenReturn(getDictionaryResponse(VERTEBRATES_CODE));
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE)).thenReturn(getDictionaryResponse(ADDRESS_CODE));
|
||||
when(dictionaryClient.getDictionaryForType(NAME_CODE)).thenReturn(getDictionaryResponse(NAME_CODE));
|
||||
when(dictionaryClient.getDictionaryForType(SPONSOR)).thenReturn(getDictionaryResponse(SPONSOR));
|
||||
when(dictionaryClient.getDictionaryForType(NO_REDACTION_INDICATOR)).thenReturn(getDictionaryResponse(NO_REDACTION_INDICATOR));
|
||||
when(dictionaryClient.getDictionaryForType(REDACTION_INDICATOR)).thenReturn(getDictionaryResponse(REDACTION_INDICATOR));
|
||||
when(dictionaryClient.getDictionaryForType(HINT_ONLY)).thenReturn(getDictionaryResponse(HINT_ONLY));
|
||||
when(dictionaryClient.getDictionaryForType(MUST_REDACT)).thenReturn(getDictionaryResponse(MUST_REDACT));
|
||||
when(dictionaryClient.getColors()).thenReturn(colors);
|
||||
when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(0L);
|
||||
when(dictionaryClient.getAllTypes(TEST_RULESET_ID)).thenReturn(TypeResponse.builder().types(getTypeResponse()).build());
|
||||
when(dictionaryClient.getDictionaryForType(VERTEBRATE, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(VERTEBRATE));
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(ADDRESS));
|
||||
when(dictionaryClient.getDictionaryForType(AUTHOR, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(AUTHOR));
|
||||
when(dictionaryClient.getDictionaryForType(SPONSOR, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(SPONSOR));
|
||||
when(dictionaryClient.getDictionaryForType(NO_REDACTION_INDICATOR, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(NO_REDACTION_INDICATOR));
|
||||
when(dictionaryClient.getDictionaryForType(REDACTION_INDICATOR, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(REDACTION_INDICATOR));
|
||||
when(dictionaryClient.getDictionaryForType(HINT_ONLY, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(HINT_ONLY));
|
||||
when(dictionaryClient.getDictionaryForType(MUST_REDACT, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(MUST_REDACT));
|
||||
when(dictionaryClient.getDictionaryForType(PUBLISHED_INFORMATION, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(PUBLISHED_INFORMATION));
|
||||
when(dictionaryClient.getDictionaryForType(TEST_METHOD, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(TEST_METHOD));
|
||||
when(dictionaryClient.getDictionaryForType(PII, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(PII));
|
||||
when(dictionaryClient.getDictionaryForType(RECOMMENDATION_AUTHOR, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(RECOMMENDATION_AUTHOR));
|
||||
when(dictionaryClient.getDictionaryForType(RECOMMENDATION_ADDRESS, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(RECOMMENDATION_ADDRESS));
|
||||
when(dictionaryClient.getDictionaryForType(FALSE_POSITIVE, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(FALSE_POSITIVE));
|
||||
when(dictionaryClient.getColors(TEST_RULESET_ID)).thenReturn(colors);
|
||||
}
|
||||
|
||||
|
||||
private void loadDictionaryForTest() {
|
||||
|
||||
dictionary.computeIfAbsent(NAME_CODE, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/names.txt")
|
||||
dictionary.computeIfAbsent(AUTHOR, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/CBI_author.txt")
|
||||
.stream()
|
||||
.map(this::cleanDictionaryEntry)
|
||||
.collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(SPONSOR, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/sponsor_companies.txt")
|
||||
.addAll(ResourceLoader.load("dictionaries/CBI_sponsor.txt")
|
||||
.stream()
|
||||
.map(this::cleanDictionaryEntry)
|
||||
.collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(VERTEBRATES_CODE, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/vertebrates.txt")
|
||||
dictionary.computeIfAbsent(VERTEBRATE, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/vertebrate.txt")
|
||||
.stream()
|
||||
.map(this::cleanDictionaryEntry)
|
||||
.collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(ADDRESS_CODE, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/addresses.txt")
|
||||
dictionary.computeIfAbsent(ADDRESS, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/CBI_address.txt")
|
||||
.stream()
|
||||
.map(this::cleanDictionaryEntry)
|
||||
.collect(Collectors.toSet()));
|
||||
@@ -176,6 +193,36 @@ public class RedactionIntegrationTest {
|
||||
.stream()
|
||||
.map(this::cleanDictionaryEntry)
|
||||
.collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(PUBLISHED_INFORMATION, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/published_information.txt")
|
||||
.stream()
|
||||
.map(this::cleanDictionaryEntry)
|
||||
.collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(TEST_METHOD, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/test_method.txt")
|
||||
.stream()
|
||||
.map(this::cleanDictionaryEntry)
|
||||
.collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(PII, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/PII.txt")
|
||||
.stream()
|
||||
.map(this::cleanDictionaryEntry)
|
||||
.collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(RECOMMENDATION_AUTHOR, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/recommendation_CBI_author.txt")
|
||||
.stream()
|
||||
.map(this::cleanDictionaryEntry)
|
||||
.collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(RECOMMENDATION_ADDRESS, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/recommendation_CBI_address.txt")
|
||||
.stream()
|
||||
.map(this::cleanDictionaryEntry)
|
||||
.collect(Collectors.toSet()));
|
||||
dictionary.computeIfAbsent(FALSE_POSITIVE, v -> new ArrayList<>())
|
||||
.addAll(ResourceLoader.load("dictionaries/false_positive.txt")
|
||||
.stream()
|
||||
.map(this::cleanDictionaryEntry)
|
||||
.collect(Collectors.toSet()));
|
||||
}
|
||||
|
||||
|
||||
@@ -187,32 +234,65 @@ public class RedactionIntegrationTest {
|
||||
|
||||
private void loadTypeForTest() {
|
||||
|
||||
typeColorMap.put(VERTEBRATES_CODE, "#00ff00");
|
||||
typeColorMap.put(ADDRESS_CODE, "#00ffff");
|
||||
typeColorMap.put(NAME_CODE, "#ffff00");
|
||||
typeColorMap.put(SPONSOR, "#2c21fc");
|
||||
typeColorMap.put(NO_REDACTION_INDICATOR, "#e600ff");
|
||||
typeColorMap.put(REDACTION_INDICATOR, "#ff7700");
|
||||
typeColorMap.put(HINT_ONLY, "#00fcb1");
|
||||
typeColorMap.put(MUST_REDACT, "#ff0000");
|
||||
typeColorMap.put(VERTEBRATE, "#ff85f7");
|
||||
typeColorMap.put(ADDRESS, "#ffe187");
|
||||
typeColorMap.put(AUTHOR, "#ffe187");
|
||||
typeColorMap.put(SPONSOR, "#85ebff");
|
||||
typeColorMap.put(NO_REDACTION_INDICATOR, "#be85ff");
|
||||
typeColorMap.put(REDACTION_INDICATOR, "#caff85");
|
||||
typeColorMap.put(HINT_ONLY, "#abc0c4");
|
||||
typeColorMap.put(MUST_REDACT, "#fab4c0");
|
||||
typeColorMap.put(PUBLISHED_INFORMATION, "#85ebff");
|
||||
typeColorMap.put(TEST_METHOD, "#91fae8");
|
||||
typeColorMap.put(PII, "#66ccff");
|
||||
typeColorMap.put(RECOMMENDATION_AUTHOR, "#8df06c");
|
||||
typeColorMap.put(RECOMMENDATION_ADDRESS, "#8df06c");
|
||||
typeColorMap.put(FALSE_POSITIVE, "#ffffff");
|
||||
|
||||
hintTypeMap.put(VERTEBRATES_CODE, true);
|
||||
hintTypeMap.put(ADDRESS_CODE, false);
|
||||
hintTypeMap.put(NAME_CODE, false);
|
||||
hintTypeMap.put(VERTEBRATE, true);
|
||||
hintTypeMap.put(ADDRESS, false);
|
||||
hintTypeMap.put(AUTHOR, false);
|
||||
hintTypeMap.put(SPONSOR, false);
|
||||
hintTypeMap.put(NO_REDACTION_INDICATOR, true);
|
||||
hintTypeMap.put(REDACTION_INDICATOR, true);
|
||||
hintTypeMap.put(HINT_ONLY, true);
|
||||
hintTypeMap.put(MUST_REDACT, true);
|
||||
hintTypeMap.put(PUBLISHED_INFORMATION, true);
|
||||
hintTypeMap.put(TEST_METHOD, true);
|
||||
hintTypeMap.put(PII, false);
|
||||
hintTypeMap.put(RECOMMENDATION_AUTHOR, false);
|
||||
hintTypeMap.put(RECOMMENDATION_ADDRESS, false);
|
||||
hintTypeMap.put(FALSE_POSITIVE, true);
|
||||
|
||||
caseInSensitiveMap.put(VERTEBRATES_CODE, true);
|
||||
caseInSensitiveMap.put(ADDRESS_CODE, false);
|
||||
caseInSensitiveMap.put(NAME_CODE, false);
|
||||
caseInSensitiveMap.put(VERTEBRATE, true);
|
||||
caseInSensitiveMap.put(ADDRESS, false);
|
||||
caseInSensitiveMap.put(AUTHOR, false);
|
||||
caseInSensitiveMap.put(SPONSOR, false);
|
||||
caseInSensitiveMap.put(NO_REDACTION_INDICATOR, true);
|
||||
caseInSensitiveMap.put(REDACTION_INDICATOR, true);
|
||||
caseInSensitiveMap.put(HINT_ONLY, true);
|
||||
caseInSensitiveMap.put(MUST_REDACT, true);
|
||||
caseInSensitiveMap.put(PUBLISHED_INFORMATION, true);
|
||||
caseInSensitiveMap.put(TEST_METHOD, false);
|
||||
caseInSensitiveMap.put(PII, false);
|
||||
caseInSensitiveMap.put(RECOMMENDATION_AUTHOR, false);
|
||||
caseInSensitiveMap.put(RECOMMENDATION_ADDRESS, false);
|
||||
caseInSensitiveMap.put(FALSE_POSITIVE, false);
|
||||
|
||||
recommendationTypeMap.put(VERTEBRATE, false);
|
||||
recommendationTypeMap.put(ADDRESS, false);
|
||||
recommendationTypeMap.put(AUTHOR, false);
|
||||
recommendationTypeMap.put(SPONSOR, false);
|
||||
recommendationTypeMap.put(NO_REDACTION_INDICATOR, false);
|
||||
recommendationTypeMap.put(REDACTION_INDICATOR, false);
|
||||
recommendationTypeMap.put(HINT_ONLY, false);
|
||||
recommendationTypeMap.put(MUST_REDACT, false);
|
||||
recommendationTypeMap.put(PUBLISHED_INFORMATION, false);
|
||||
recommendationTypeMap.put(TEST_METHOD, false);
|
||||
recommendationTypeMap.put(PII, false);
|
||||
recommendationTypeMap.put(RECOMMENDATION_AUTHOR, true);
|
||||
recommendationTypeMap.put(RECOMMENDATION_ADDRESS, true);
|
||||
recommendationTypeMap.put(FALSE_POSITIVE, false);
|
||||
|
||||
colors.setDefaultColor("#acfc00");
|
||||
colors.setNotRedacted("#cccccc");
|
||||
@@ -227,9 +307,11 @@ public class RedactionIntegrationTest {
|
||||
.stream()
|
||||
.map(typeColor -> TypeResult.builder()
|
||||
.type(typeColor.getKey())
|
||||
.ruleSetId(TEST_RULESET_ID)
|
||||
.hexColor(typeColor.getValue())
|
||||
.isHint(hintTypeMap.get(typeColor.getKey()))
|
||||
.isCaseInsensitive(caseInSensitiveMap.get(typeColor.getKey()))
|
||||
.isRecommendation(recommendationTypeMap.get(typeColor.getKey()))
|
||||
.build())
|
||||
|
||||
.collect(Collectors.toList());
|
||||
@@ -243,6 +325,7 @@ public class RedactionIntegrationTest {
|
||||
.entries(dictionary.get(type))
|
||||
.isHint(hintTypeMap.get(type))
|
||||
.isCaseInsensitive(caseInSensitiveMap.get(type))
|
||||
.isRecommendation(recommendationTypeMap.get(type))
|
||||
.build();
|
||||
}
|
||||
|
||||
@@ -250,6 +333,7 @@ public class RedactionIntegrationTest {
|
||||
@Test
|
||||
public void noExceptionShouldBeThrownForAnyFiles() throws IOException {
|
||||
|
||||
long start = System.currentTimeMillis();
|
||||
System.out.println("noExceptionShouldBeThrownForAnyFiles");
|
||||
ClassLoader loader = getClass().getClassLoader();
|
||||
URL url = loader.getResource("files");
|
||||
@@ -260,6 +344,7 @@ public class RedactionIntegrationTest {
|
||||
}
|
||||
for (File path : input) {
|
||||
RedactionRequest request = RedactionRequest.builder()
|
||||
.ruleSetId(TEST_RULESET_ID)
|
||||
.document(IOUtils.toByteArray(new FileInputStream(path)))
|
||||
.build();
|
||||
System.out.println("Redacting file : " + path.getName());
|
||||
@@ -275,6 +360,10 @@ public class RedactionIntegrationTest {
|
||||
});
|
||||
}
|
||||
|
||||
long end = System.currentTimeMillis();
|
||||
|
||||
System.out.println("duration: " + (end - start));
|
||||
|
||||
}
|
||||
|
||||
|
||||
@@ -301,15 +390,22 @@ public class RedactionIntegrationTest {
|
||||
|
||||
System.out.println("redactionTest");
|
||||
long start = System.currentTimeMillis();
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/Metolachlor/S-Metolachlor_RAR_01_Volume_1_2018-09-06.pdf");
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Applicant Producer Table.pdf");
|
||||
|
||||
RedactionRequest request = RedactionRequest.builder()
|
||||
.ruleSetId(TEST_RULESET_ID)
|
||||
.document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
|
||||
.build();
|
||||
request.setFlatRedaction(false);
|
||||
|
||||
RedactionResult result = redactionController.redact(request);
|
||||
|
||||
// result.getRedactionLog().getRedactionLogEntry().forEach(entry -> {
|
||||
// if(!entry.isHint()){
|
||||
// System.out.println(entry.getPositions().get(0).getPage() +":"+ entry.getTextBefore() +"--->"+ entry.getValue() + "--->" + entry.getTextAfter());
|
||||
// }
|
||||
// });
|
||||
|
||||
try (FileOutputStream fileOutputStream = new FileOutputStream("/tmp/Redacted.pdf")) {
|
||||
fileOutputStream.write(result.getDocument());
|
||||
}
|
||||
@@ -328,6 +424,7 @@ public class RedactionIntegrationTest {
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/Metolachlor/S-Metolachlor_RAR_02_Volume_2_2018-09-06.pdf");
|
||||
|
||||
RedactionRequest request = RedactionRequest.builder()
|
||||
.ruleSetId(TEST_RULESET_ID)
|
||||
.document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
|
||||
.build();
|
||||
|
||||
@@ -379,6 +476,7 @@ public class RedactionIntegrationTest {
|
||||
manualRedactions.getEntriesToAdd().add(manualRedactionEntry);
|
||||
|
||||
RedactionRequest request = RedactionRequest.builder()
|
||||
.ruleSetId(TEST_RULESET_ID)
|
||||
.document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
|
||||
.manualRedactions(manualRedactions)
|
||||
.build();
|
||||
@@ -399,7 +497,7 @@ public class RedactionIntegrationTest {
|
||||
public void classificationTest() throws IOException {
|
||||
|
||||
System.out.println("classificationTest");
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/Fludioxonil/51 Fludioxonil_RAR_02_Volume_2_2018-02-21.pdf");
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/Trinexapac/93 Trinexapac-ethyl_RAR_03_Volume_3CA_B-1_2017-03-31.pdf");
|
||||
|
||||
RedactionRequest request = RedactionRequest.builder()
|
||||
.document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
|
||||
@@ -435,7 +533,7 @@ public class RedactionIntegrationTest {
|
||||
public void htmlTablesTest() throws IOException {
|
||||
|
||||
System.out.println("htmlTablesTest");
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/line_breaks.pdf");
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/Fludioxonil/52 Fludioxonil_RAR_07_Volume_3CA_B-5_2018-02-21.pdf");
|
||||
|
||||
RedactionRequest request = RedactionRequest.builder()
|
||||
.document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
|
||||
@@ -473,6 +571,7 @@ public class RedactionIntegrationTest {
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Phantom Cells.pdf");
|
||||
|
||||
RedactionRequest request = RedactionRequest.builder()
|
||||
.ruleSetId(TEST_RULESET_ID)
|
||||
.document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
|
||||
.build();
|
||||
request.setFlatRedaction(false);
|
||||
@@ -494,9 +593,10 @@ public class RedactionIntegrationTest {
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/sponsor_companies.pdf");
|
||||
|
||||
RedactionRequest request = RedactionRequest.builder()
|
||||
.ruleSetId(TEST_RULESET_ID)
|
||||
.flatRedaction(false)
|
||||
.document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
|
||||
.build();
|
||||
request.setFlatRedaction(false);
|
||||
|
||||
RedactionResult result = redactionController.redact(request);
|
||||
|
||||
|
||||
+155
-113
@@ -1,22 +1,18 @@
|
||||
package com.iqser.red.service.redaction.v1.server.redaction.service;
|
||||
|
||||
import static org.assertj.core.api.Assertions.assertThat;
|
||||
import static org.mockito.Mockito.when;
|
||||
|
||||
import java.io.BufferedReader;
|
||||
import java.io.ByteArrayInputStream;
|
||||
import java.io.IOException;
|
||||
import java.io.InputStream;
|
||||
import java.io.InputStreamReader;
|
||||
import java.net.URL;
|
||||
import java.nio.charset.StandardCharsets;
|
||||
import java.util.ArrayList;
|
||||
import java.util.Arrays;
|
||||
import java.util.Collections;
|
||||
import java.util.HashSet;
|
||||
import java.util.Set;
|
||||
import java.util.concurrent.atomic.AtomicLong;
|
||||
|
||||
import com.iqser.red.service.configuration.v1.api.model.Colors;
|
||||
import com.iqser.red.service.configuration.v1.api.model.DictionaryResponse;
|
||||
import com.iqser.red.service.configuration.v1.api.model.RulesResponse;
|
||||
import com.iqser.red.service.configuration.v1.api.model.TypeResponse;
|
||||
import com.iqser.red.service.configuration.v1.api.model.TypeResult;
|
||||
import com.iqser.red.service.redaction.v1.model.RedactionRequest;
|
||||
import com.iqser.red.service.redaction.v1.server.classification.model.Document;
|
||||
import com.iqser.red.service.redaction.v1.server.client.DictionaryClient;
|
||||
import com.iqser.red.service.redaction.v1.server.client.RulesClient;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.utils.EntitySearchUtils;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.utils.ResourceLoader;
|
||||
import com.iqser.red.service.redaction.v1.server.segmentation.PdfSegmentationService;
|
||||
import org.apache.commons.io.IOUtils;
|
||||
import org.apache.pdfbox.pdmodel.PDDocument;
|
||||
import org.junit.Before;
|
||||
@@ -35,25 +31,32 @@ import org.springframework.context.annotation.Bean;
|
||||
import org.springframework.core.io.ClassPathResource;
|
||||
import org.springframework.test.context.junit4.SpringRunner;
|
||||
|
||||
import com.iqser.red.service.configuration.v1.api.model.Colors;
|
||||
import com.iqser.red.service.configuration.v1.api.model.DictionaryResponse;
|
||||
import com.iqser.red.service.configuration.v1.api.model.RulesResponse;
|
||||
import com.iqser.red.service.configuration.v1.api.model.TypeResponse;
|
||||
import com.iqser.red.service.configuration.v1.api.model.TypeResult;
|
||||
import com.iqser.red.service.redaction.v1.model.RedactionRequest;
|
||||
import com.iqser.red.service.redaction.v1.server.classification.model.Document;
|
||||
import com.iqser.red.service.redaction.v1.server.client.DictionaryClient;
|
||||
import com.iqser.red.service.redaction.v1.server.client.RulesClient;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.utils.ResourceLoader;
|
||||
import com.iqser.red.service.redaction.v1.server.segmentation.PdfSegmentationService;
|
||||
import java.io.BufferedReader;
|
||||
import java.io.ByteArrayInputStream;
|
||||
import java.io.IOException;
|
||||
import java.io.InputStream;
|
||||
import java.io.InputStreamReader;
|
||||
import java.net.URL;
|
||||
import java.nio.charset.StandardCharsets;
|
||||
import java.util.ArrayList;
|
||||
import java.util.Arrays;
|
||||
import java.util.Collections;
|
||||
import java.util.HashSet;
|
||||
import java.util.List;
|
||||
import java.util.Set;
|
||||
import java.util.concurrent.atomic.AtomicLong;
|
||||
import java.util.regex.Matcher;
|
||||
import java.util.regex.Pattern;
|
||||
|
||||
import static org.assertj.core.api.Assertions.assertThat;
|
||||
import static org.mockito.Mockito.when;
|
||||
|
||||
@SpringBootTest
|
||||
@RunWith(SpringRunner.class)
|
||||
public class EntityRedactionServiceTest {
|
||||
|
||||
private static final String DEFAULT_RULES = loadFromClassPath("drools/rules.drl");
|
||||
private static final String NAME_CODE = "name";
|
||||
private static final String AUTHOR_CODE = "author";
|
||||
private static final String ADDRESS_CODE = "address";
|
||||
private static final String SPONSOR_CODE = "sponsor";
|
||||
|
||||
@@ -75,6 +78,8 @@ public class EntityRedactionServiceTest {
|
||||
@Autowired
|
||||
private DroolsExecutionService droolsExecutionService;
|
||||
|
||||
private final static String TEST_RULESET_ID = "123";
|
||||
|
||||
@TestConfiguration
|
||||
public static class RedactionIntegrationTestConfiguration {
|
||||
|
||||
@@ -101,11 +106,11 @@ public class EntityRedactionServiceTest {
|
||||
public void testNestedEntitiesRemoval() {
|
||||
|
||||
Set<Entity> entities = new HashSet<>();
|
||||
Entity nested = new Entity("nested", "fake type", 10, 16, "fake headline", 0);
|
||||
Entity nesting = new Entity("nesting nested", "fake type", 2, 16, "fake headline", 0);
|
||||
Entity nested = new Entity("nested", "fake type", 10, 16, "fake headline", 0, false);
|
||||
Entity nesting = new Entity("nesting nested", "fake type", 2, 16, "fake headline", 0, false);
|
||||
entities.add(nested);
|
||||
entities.add(nesting);
|
||||
entityRedactionService.removeEntitiesContainedInLarger(entities);
|
||||
EntitySearchUtils.removeEntitiesContainedInLarger(entities);
|
||||
|
||||
assertThat(entities.size()).isEqualTo(1);
|
||||
assertThat(entities).contains(nesting);
|
||||
@@ -125,16 +130,21 @@ public class EntityRedactionServiceTest {
|
||||
DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
|
||||
.entries(Arrays.asList("Casey, H.W.", "O’Loughlin, C.K.", "Salamon, C.M.", "Smith, S.H."))
|
||||
.build();
|
||||
when(dictionaryClient.getVersion()).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
when(dictionaryClient.getDictionaryForType(NAME_CODE)).thenReturn(dictionaryResponse);
|
||||
when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
|
||||
DictionaryResponse addressResponse = DictionaryResponse.builder()
|
||||
.entries(Collections.singletonList("Toxigenics, Inc., Decatur, IL 62526, USA"))
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE)).thenReturn(addressResponse);
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID)).thenReturn(addressResponse);
|
||||
|
||||
DictionaryResponse sponsorResponse = DictionaryResponse.builder()
|
||||
.entries(Collections.emptyList())
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_RULESET_ID)).thenReturn(sponsorResponse);
|
||||
|
||||
try (PDDocument pdDocument = PDDocument.load(new ByteArrayInputStream(redactionRequest.getDocument()))) {
|
||||
Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
|
||||
entityRedactionService.processDocument(classifiedDoc, null);
|
||||
entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null);
|
||||
assertThat(classifiedDoc.getEntities()).hasSize(1); // one page
|
||||
assertThat(classifiedDoc.getEntities().get(1)).hasSize(7);// 3 author cells, 1 address, 1 Y and 2 N entities
|
||||
}
|
||||
@@ -153,16 +163,20 @@ public class EntityRedactionServiceTest {
|
||||
DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
|
||||
.entries(Arrays.asList("Casey, H.W.", "O’Loughlin, C.K.", "Salamon, C.M.", "Smith, S.H."))
|
||||
.build();
|
||||
when(dictionaryClient.getVersion()).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
when(dictionaryClient.getDictionaryForType(NAME_CODE)).thenReturn(dictionaryResponse);
|
||||
when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
|
||||
DictionaryResponse addressResponse = DictionaryResponse.builder()
|
||||
.entries(Collections.singletonList("Toxigenics, Inc., Decatur, IL 62526, USA"))
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE)).thenReturn(addressResponse);
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID)).thenReturn(addressResponse);
|
||||
DictionaryResponse sponsorResponse = DictionaryResponse.builder()
|
||||
.entries(Collections.emptyList())
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_RULESET_ID)).thenReturn(sponsorResponse);
|
||||
|
||||
try (PDDocument pdDocument = PDDocument.load(new ByteArrayInputStream(redactionRequest.getDocument()))) {
|
||||
Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
|
||||
entityRedactionService.processDocument(classifiedDoc, null);
|
||||
entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null);
|
||||
assertThat(classifiedDoc.getEntities()).hasSize(1); // one page
|
||||
assertThat(classifiedDoc.getEntities().get(1)).hasSize(7);// 3 author cells, 1 address, 1 Y and 2 N entities
|
||||
}
|
||||
@@ -174,18 +188,22 @@ public class EntityRedactionServiceTest {
|
||||
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/Cyprodinil/40 Cyprodinil - EU AIR3 - LCA Section 1" +
|
||||
" Supplement - Identity of the active substance - Reference list.pdf");
|
||||
when(dictionaryClient.getVersion()).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
|
||||
.entries(new ArrayList<>(ResourceLoader.load("dictionaries/names.txt")))
|
||||
.entries(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_author.txt")))
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(NAME_CODE)).thenReturn(dictionaryResponse);
|
||||
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
|
||||
DictionaryResponse addressResponse = DictionaryResponse.builder()
|
||||
.entries(new ArrayList<>(ResourceLoader.load("dictionaries/addresses.txt")))
|
||||
.entries(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_address.txt")))
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE)).thenReturn(addressResponse);
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID)).thenReturn(addressResponse);
|
||||
DictionaryResponse sponsorResponse = DictionaryResponse.builder()
|
||||
.entries(Collections.emptyList())
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_RULESET_ID)).thenReturn(sponsorResponse);
|
||||
try (PDDocument pdDocument = PDDocument.load(pdfFileResource.getInputStream())) {
|
||||
Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
|
||||
entityRedactionService.processDocument(classifiedDoc, null);
|
||||
entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null);
|
||||
assertThat(classifiedDoc.getEntities()
|
||||
.entrySet()
|
||||
.stream()
|
||||
@@ -195,7 +213,7 @@ public class EntityRedactionServiceTest {
|
||||
"the plant protection product.pdf");
|
||||
try (PDDocument pdDocument = PDDocument.load(pdfFileResource.getInputStream())) {
|
||||
Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
|
||||
entityRedactionService.processDocument(classifiedDoc, null);
|
||||
entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null);
|
||||
assertThat(classifiedDoc.getEntities()
|
||||
.entrySet()
|
||||
.stream()
|
||||
@@ -207,18 +225,22 @@ public class EntityRedactionServiceTest {
|
||||
public void testFalsePositiveInWrongCell() throws IOException {
|
||||
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Row With Ambiguous Redaction.pdf");
|
||||
when(dictionaryClient.getVersion()).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
|
||||
.entries(new ArrayList<>(ResourceLoader.load("dictionaries/names.txt")))
|
||||
.entries(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_author.txt")))
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(NAME_CODE)).thenReturn(dictionaryResponse);
|
||||
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
|
||||
DictionaryResponse addressResponse = DictionaryResponse.builder()
|
||||
.entries(new ArrayList<>(ResourceLoader.load("dictionaries/addresses.txt")))
|
||||
.entries(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_address.txt")))
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE)).thenReturn(addressResponse);
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID)).thenReturn(addressResponse);
|
||||
DictionaryResponse sponsorResponse = DictionaryResponse.builder()
|
||||
.entries(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_sponsor.txt")))
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_RULESET_ID)).thenReturn(sponsorResponse);
|
||||
try (PDDocument pdDocument = PDDocument.load(pdfFileResource.getInputStream())) {
|
||||
Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
|
||||
entityRedactionService.processDocument(classifiedDoc, null);
|
||||
entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null);
|
||||
assertThat(classifiedDoc.getEntities()).hasSize(1); // one page
|
||||
assertThat(classifiedDoc.getEntities().get(1).stream()
|
||||
.filter(entity -> entity.getMatchedRule() == 9)
|
||||
@@ -240,54 +262,58 @@ public class EntityRedactionServiceTest {
|
||||
" when\n" +
|
||||
" eval(section.headlineContainsWord(\"applicant\") || section.getText().contains(\"Applicant\"));\n" +
|
||||
" then\n" +
|
||||
" section.redactLineAfter(\"Name:\", \"address\", 6, \"Applicant information was found\", \"Reg" +
|
||||
" section.redactLineAfter(\"Name:\", \"address\", 6,true, \"Applicant information was found\", \"Reg" +
|
||||
" (EC) No 1107/2009 Art. 63 (2g)\");\n" +
|
||||
" section.redactBetween(\"Address:\", \"Contact\", \"address\", 6, \"Applicant information was found\", \"Reg (EC) No 1107/2009 Art. 63 (2g)\");\n" +
|
||||
" section.redactLineAfter(\"Contact point:\", \"address\", 6, \"Applicant information was found\", \"Reg (EC) No 1107/2009 Art. 63 (2g)\");\n" +
|
||||
" section.redactLineAfter(\"Phone:\", \"address\", 6, \"Applicant information was found\", " +
|
||||
" section.redactBetween(\"Address:\", \"Contact\", \"address\", 6,true, \"Applicant information was found\", \"Reg (EC) No 1107/2009 Art. 63 (2g)\");\n" +
|
||||
" section.redactLineAfter(\"Contact point:\", \"address\", 6,true, \"Applicant information was found\", \"Reg (EC) No 1107/2009 Art. 63 (2g)\");\n" +
|
||||
" section.redactLineAfter(\"Phone:\", \"address\", 6,true, \"Applicant information was found\", " +
|
||||
"\"Reg (EC) No 1107/2009 Art. 63 (2g)\");\n" +
|
||||
" section.redactLineAfter(\"Fax:\", \"address\", 6, \"Applicant information was found\", \"Reg " +
|
||||
" section.redactLineAfter(\"Fax:\", \"address\", 6,true, \"Applicant information was found\", \"Reg " +
|
||||
"(EC) No 1107/2009 Art. 63 (2g)\");\n" +
|
||||
" section.redactLineAfter(\"Tel.:\", \"address\", 6, \"Applicant information was found\", \"Reg" +
|
||||
" section.redactLineAfter(\"Tel.:\", \"address\", 6,true, \"Applicant information was found\", \"Reg" +
|
||||
" (EC) No 1107/2009 Art. 63 (2g)\");\n" +
|
||||
" section.redactLineAfter(\"Tel:\", \"address\", 6, \"Applicant information was found\", \"Reg " +
|
||||
" section.redactLineAfter(\"Tel:\", \"address\", 6,true, \"Applicant information was found\", \"Reg " +
|
||||
"(EC) No 1107/2009 Art. 63 (2g)\");\n" +
|
||||
" section.redactLineAfter(\"E-mail:\", \"address\", 6, \"Applicant information was found\", " +
|
||||
" section.redactLineAfter(\"E-mail:\", \"address\", 6,true, \"Applicant information was found\", " +
|
||||
"\"Reg (EC) No 1107/2009 Art. 63 (2g)\");\n" +
|
||||
" section.redactLineAfter(\"Email:\", \"address\", 6, \"Applicant information was found\", " +
|
||||
" section.redactLineAfter(\"Email:\", \"address\", 6,true, \"Applicant information was found\", " +
|
||||
"\"Reg (EC) No 1107/2009 Art. 63 (2g)\");\n" +
|
||||
" section.redactLineAfter(\"Contact:\", \"address\", 6, \"Applicant information was found\", " +
|
||||
" section.redactLineAfter(\"Contact:\", \"address\", 6,true, \"Applicant information was found\", " +
|
||||
"\"Reg (EC) No 1107/2009 Art. 63 (2g)\");\n" +
|
||||
" section.redactLineAfter(\"Telephone number:\", \"address\", 6, \"Applicant information was found\", \"Reg (EC) No 1107/2009 Art. 63 (2g)\");\n" +
|
||||
" section.redactLineAfter(\"Fax number:\", \"address\", 6, \"Applicant information was found\"," +
|
||||
" section.redactLineAfter(\"Telephone number:\", \"address\", 6,true, \"Applicant information was found\", \"Reg (EC) No 1107/2009 Art. 63 (2g)\");\n" +
|
||||
" section.redactLineAfter(\"Fax number:\", \"address\", 6,true, \"Applicant information was found\"," +
|
||||
" \"Reg (EC) No 1107/2009 Art. 63 (2g)\");\n" +
|
||||
" section.redactLineAfter(\"Telephone:\", \"address\", 6, \"Applicant information was found\", " +
|
||||
" section.redactLineAfter(\"Telephone:\", \"address\", 6,true, \"Applicant information was found\", " +
|
||||
"\"Reg (EC) No 1107/2009 Art. 63 (2g)\");\n" +
|
||||
" section.redactBetween(\"No:\", \"Fax\", \"address\", 6, \"Applicant information was found\", " +
|
||||
" section.redactBetween(\"No:\", \"Fax\", \"address\", 6,true, \"Applicant information was found\", " +
|
||||
"\"Reg (EC) No 1107/2009 Art. 63 (2g)\");\n" +
|
||||
" section.redactBetween(\"Contact:\", \"Tel.:\", \"address\", 6, \"Applicant information was found\", \"Reg (EC) No 1107/2009 Art. 63 (2g)\");\n" +
|
||||
" section.redactBetween(\"Contact:\", \"Tel.:\", \"address\", 6,true, \"Applicant information was found\", \"Reg (EC) No 1107/2009 Art. 63 (2g)\");\n" +
|
||||
" end";
|
||||
when(rulesClient.getVersion()).thenReturn(RULES_VERSION.incrementAndGet());
|
||||
when(rulesClient.getRules()).thenReturn(new RulesResponse(tableRules));
|
||||
droolsExecutionService.updateRules();
|
||||
when(rulesClient.getVersion(TEST_RULESET_ID)).thenReturn(RULES_VERSION.incrementAndGet());
|
||||
when(rulesClient.getRules(TEST_RULESET_ID)).thenReturn(new RulesResponse(tableRules));
|
||||
droolsExecutionService.updateRules(TEST_RULESET_ID);
|
||||
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Applicant Producer Table.pdf");
|
||||
when(dictionaryClient.getVersion()).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
|
||||
.entries(new ArrayList<>(ResourceLoader.load("dictionaries/names.txt")))
|
||||
.entries(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_author.txt")))
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(NAME_CODE)).thenReturn(dictionaryResponse);
|
||||
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
|
||||
DictionaryResponse addressResponse = DictionaryResponse.builder()
|
||||
.entries(new ArrayList<>(ResourceLoader.load("dictionaries/addresses.txt")))
|
||||
.entries(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_address.txt")))
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE)).thenReturn(addressResponse);
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID)).thenReturn(addressResponse);
|
||||
DictionaryResponse sponsorResponse = DictionaryResponse.builder()
|
||||
.entries(Collections.emptyList())
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_RULESET_ID)).thenReturn(sponsorResponse);
|
||||
try (PDDocument pdDocument = PDDocument.load(pdfFileResource.getInputStream())) {
|
||||
Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
|
||||
entityRedactionService.processDocument(classifiedDoc, null);
|
||||
entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null);
|
||||
assertThat(classifiedDoc.getEntities()).hasSize(1); // one page
|
||||
assertThat(classifiedDoc.getEntities().get(1).stream()
|
||||
.filter(entity -> entity.getMatchedRule() == 6)
|
||||
.count()).isEqualTo(18);
|
||||
.count()).isEqualTo(13);
|
||||
}
|
||||
|
||||
}
|
||||
@@ -304,19 +330,27 @@ public class EntityRedactionServiceTest {
|
||||
"Section(searchText.toLowerCase().contains(\"batches produced at\"))\n" + " then\n" + " section" +
|
||||
".redactIfPrecededBy(\"batches produced at\", \"sponsor\", 11, \"Redacted because it represents a " +
|
||||
"sponsor company\", \"Reg (EC) No 1107/2009 Art. 63 (2g)\");\n" + " end";
|
||||
when(rulesClient.getVersion()).thenReturn(RULES_VERSION.incrementAndGet());
|
||||
when(rulesClient.getRules()).thenReturn(new RulesResponse(tableRules));
|
||||
droolsExecutionService.updateRules();
|
||||
when(rulesClient.getVersion(TEST_RULESET_ID)).thenReturn(RULES_VERSION.incrementAndGet());
|
||||
when(rulesClient.getRules(TEST_RULESET_ID)).thenReturn(new RulesResponse(tableRules));
|
||||
droolsExecutionService.updateRules(TEST_RULESET_ID);
|
||||
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/batches_new_line.pdf");
|
||||
when(dictionaryClient.getVersion()).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
|
||||
.entries(new ArrayList<>(ResourceLoader.load("dictionaries/sponsor_companies.txt")))
|
||||
when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
DictionaryResponse addressResponse = DictionaryResponse.builder()
|
||||
.entries(Collections.emptyList())
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(SPONSOR_CODE)).thenReturn(dictionaryResponse);
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID)).thenReturn(addressResponse);
|
||||
DictionaryResponse authorResponse = DictionaryResponse.builder()
|
||||
.entries(Collections.emptyList())
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(authorResponse);
|
||||
DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
|
||||
.entries(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_sponsor.txt")))
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
|
||||
try (PDDocument pdDocument = PDDocument.load(pdfFileResource.getInputStream())) {
|
||||
Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
|
||||
entityRedactionService.processDocument(classifiedDoc, null);
|
||||
entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null);
|
||||
assertThat(classifiedDoc.getEntities()).hasSize(1); // one page
|
||||
assertThat(classifiedDoc.getEntities().get(1).stream()
|
||||
.filter(entity -> entity.getMatchedRule() == 11)
|
||||
@@ -335,16 +369,20 @@ public class EntityRedactionServiceTest {
|
||||
.entries(Arrays.asList("Bissig R.", "Thanei P."))
|
||||
.build();
|
||||
|
||||
when(dictionaryClient.getVersion()).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
when(dictionaryClient.getDictionaryForType(NAME_CODE)).thenReturn(dictionaryResponse);
|
||||
when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
|
||||
DictionaryResponse addressResponse = DictionaryResponse.builder()
|
||||
.entries(Collections.singletonList("Novartis Crop Protection AG, Basel, Switzerland"))
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE)).thenReturn(addressResponse);
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID)).thenReturn(addressResponse);
|
||||
|
||||
DictionaryResponse sponsorResponse = DictionaryResponse.builder()
|
||||
.entries(Collections.emptyList())
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_RULESET_ID)).thenReturn(sponsorResponse);
|
||||
try (PDDocument pdDocument = PDDocument.load(pdfFileResource.getInputStream())) {
|
||||
Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
|
||||
entityRedactionService.processDocument(classifiedDoc, null);
|
||||
entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null);
|
||||
assertThat(classifiedDoc.getEntities()).hasSize(2); // two pages
|
||||
assertThat(classifiedDoc.getEntities().get(1).stream().filter(entity -> entity.getMatchedRule() == 9).count()).isEqualTo(8);
|
||||
assertThat(classifiedDoc.getEntities().get(2).stream().filter(entity -> entity.getMatchedRule() == 9).count()).isEqualTo(5); // 2 names, 1 address, 2 Y
|
||||
@@ -356,19 +394,19 @@ public class EntityRedactionServiceTest {
|
||||
.entries(Arrays.asList("Tribolet, R.", "Muir, G.", "Kühne-Thu, H.", "Close, C."))
|
||||
.build();
|
||||
|
||||
when(dictionaryClient.getVersion()).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
when(dictionaryClient.getDictionaryForType(NAME_CODE)).thenReturn(dictionaryResponse);
|
||||
when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
|
||||
addressResponse = DictionaryResponse.builder()
|
||||
.entries(Collections.singletonList("Novartis Crop Protection AG, Basel, Switzerland"))
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE)).thenReturn(addressResponse);
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID)).thenReturn(addressResponse);
|
||||
|
||||
try (PDDocument pdDocument = PDDocument.load(pdfFileResource.getInputStream())) {
|
||||
Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
|
||||
entityRedactionService.processDocument(classifiedDoc, null);
|
||||
entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null);
|
||||
assertThat(classifiedDoc.getEntities()).hasSize(1); // one page
|
||||
assertThat(classifiedDoc.getEntities().get(1).stream().filter(entity -> entity.getMatchedRule() == 9).count()).isEqualTo(3);
|
||||
assertThat(classifiedDoc.getEntities().get(1).stream().filter(entity -> entity.getMatchedRule() == 8).count()).isEqualTo(8);
|
||||
assertThat(classifiedDoc.getEntities().get(1).stream().filter(entity -> entity.getMatchedRule() == 8).count()).isEqualTo(9);
|
||||
}
|
||||
}
|
||||
|
||||
@@ -382,16 +420,20 @@ public class EntityRedactionServiceTest {
|
||||
.entries(Collections.singletonList("Aldershof S."))
|
||||
.build();
|
||||
|
||||
when(dictionaryClient.getVersion()).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
when(dictionaryClient.getDictionaryForType(NAME_CODE)).thenReturn(dictionaryResponse);
|
||||
when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
|
||||
DictionaryResponse addressResponse = DictionaryResponse.builder()
|
||||
.entries(Collections.singletonList("Novartis Crop Protection AG, Basel, Switzerland"))
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE)).thenReturn(addressResponse);
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID)).thenReturn(addressResponse);
|
||||
|
||||
DictionaryResponse sponsorResponse = DictionaryResponse.builder()
|
||||
.entries(Collections.emptyList())
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_RULESET_ID)).thenReturn(sponsorResponse);
|
||||
try (PDDocument pdDocument = PDDocument.load(pdfFileResource.getInputStream())) {
|
||||
Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
|
||||
entityRedactionService.processDocument(classifiedDoc, null);
|
||||
entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null);
|
||||
assertThat(classifiedDoc.getEntities()).hasSize(1); // one page
|
||||
assertThat(classifiedDoc.getEntities().get(1).stream().filter(entity -> entity.getMatchedRule() == 8).count()).isEqualTo(6);
|
||||
}
|
||||
@@ -409,7 +451,7 @@ public class EntityRedactionServiceTest {
|
||||
" when\n" +
|
||||
" Section(rowEquals(\"Vertebrate study Y/N\", \"N\") || rowEquals(\"Vertebrate study Y/N\", \"No\"))\n" +
|
||||
" then\n" +
|
||||
" section.redactNotCell(\"Author(s)\", 8, \"name\", \"Not redacted because row is not a vertebrate study\");\n" +
|
||||
" section.redactNotCell(\"Author(s)\", 8, \"name\", false, \"Not redacted because row is not a vertebrate study\");\n" +
|
||||
" section.redactNot(\"address\", 8, \"Not redacted because row is not a vertebrate study\");\n" +
|
||||
" section.highlightCell(\"Vertebrate study Y/N\", 8, \"hint_only\");\n" +
|
||||
" end\n" +
|
||||
@@ -418,32 +460,32 @@ public class EntityRedactionServiceTest {
|
||||
" Section(rowEquals(\"Vertebrate study Y/N\", \"Y\") || rowEquals(\"Vertebrate study Y/N\", " +
|
||||
"\"Yes\"))\n" +
|
||||
" then\n" +
|
||||
" section.redactCell(\"Author(s)\", 9, \"name\", \"Redacted because row is a vertebrate study\", \"Reg (EC) No 1107/2009 Art. 63 (2g)\");\n" +
|
||||
" section.redactCell(\"Author(s)\", 9, \"name\", false, \"Redacted because row is a vertebrate study\", \"Reg (EC) No 1107/2009 Art. 63 (2g)\");\n" +
|
||||
" section.redact(\"address\", 9, \"Redacted because row is a vertebrate study\", \"Reg (EC) No" +
|
||||
" 1107/2009 Art. 63 (2g)\");\n" +
|
||||
" section.highlightCell(\"Vertebrate study Y/N\", 9, \"must_redact\");\n" +
|
||||
" end";
|
||||
when(rulesClient.getVersion()).thenReturn(RULES_VERSION.incrementAndGet());
|
||||
when(rulesClient.getRules()).thenReturn(new RulesResponse(tableRules));
|
||||
when(rulesClient.getVersion(TEST_RULESET_ID)).thenReturn(RULES_VERSION.incrementAndGet());
|
||||
when(rulesClient.getRules(TEST_RULESET_ID)).thenReturn(new RulesResponse(tableRules));
|
||||
TypeResponse typeResponse = TypeResponse.builder()
|
||||
.types(Arrays.asList(
|
||||
TypeResult.builder().type(NAME_CODE).hexColor("#ffff00").build(),
|
||||
TypeResult.builder().type(ADDRESS_CODE).hexColor("#ff00ff").build(),
|
||||
TypeResult.builder().type(SPONSOR_CODE).hexColor("#00ffff").build()))
|
||||
TypeResult.builder().ruleSetId(TEST_RULESET_ID).type(AUTHOR_CODE).hexColor("#ffff00").build(),
|
||||
TypeResult.builder().ruleSetId(TEST_RULESET_ID).type(ADDRESS_CODE).hexColor("#ff00ff").build(),
|
||||
TypeResult.builder().ruleSetId(TEST_RULESET_ID).type(SPONSOR_CODE).hexColor("#00ffff").build()))
|
||||
.build();
|
||||
when(dictionaryClient.getVersion()).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
when(dictionaryClient.getAllTypes()).thenReturn(typeResponse);
|
||||
when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
when(dictionaryClient.getAllTypes(TEST_RULESET_ID)).thenReturn(typeResponse);
|
||||
|
||||
// Default empty return to prevent NPEs
|
||||
DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(NAME_CODE)).thenReturn(dictionaryResponse);
|
||||
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
|
||||
DictionaryResponse addressResponse = DictionaryResponse.builder()
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE)).thenReturn(addressResponse);
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID)).thenReturn(addressResponse);
|
||||
DictionaryResponse sponsorResponse = DictionaryResponse.builder()
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(SPONSOR_CODE)).thenReturn(sponsorResponse);
|
||||
when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_RULESET_ID)).thenReturn(sponsorResponse);
|
||||
|
||||
Colors colors = new Colors();
|
||||
colors.setDefaultColor("#acfc00");
|
||||
@@ -451,7 +493,7 @@ public class EntityRedactionServiceTest {
|
||||
colors.setRequestAdd("#04b093");
|
||||
colors.setRequestRemove("#04b093");
|
||||
|
||||
when(dictionaryClient.getColors()).thenReturn(colors);
|
||||
when(dictionaryClient.getColors(TEST_RULESET_ID)).thenReturn(colors);
|
||||
}
|
||||
|
||||
|
||||
|
||||
+95
@@ -0,0 +1,95 @@
|
||||
package com.iqser.red.service.redaction.v1.server.redaction.utils;
|
||||
|
||||
import org.junit.Test;
|
||||
|
||||
import java.util.ArrayList;
|
||||
import java.util.List;
|
||||
import java.util.regex.Matcher;
|
||||
import java.util.regex.Pattern;
|
||||
|
||||
public class RegExPatternTest {
|
||||
|
||||
|
||||
@Test
|
||||
public void testEmailRegEx(){
|
||||
String text = "Address: Schwarzwaldalle " +
|
||||
"P.O.Box\n" +
|
||||
"CH-4002 Basel\n" +
|
||||
"Switzerland\n" +
|
||||
"Contact: Christian Warmers\n" +
|
||||
"Tel: +41 (61) 323 8044\n" +
|
||||
"christian.warmers@syngenta.com";
|
||||
|
||||
|
||||
Pattern p = Pattern.compile("\\b[A-Z0-9._%+-]+@[A-Z0-9.-]+\\.[A-Z]{2,4}\\b", Pattern.CASE_INSENSITIVE);
|
||||
|
||||
Matcher matcher = p.matcher(text);
|
||||
|
||||
while (matcher.find()) {
|
||||
String match = matcher.group(0);
|
||||
System.out.println(match);
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
public void testEtAlRegEx() {
|
||||
String text = "To assess the potential of S-metolachlor to cause endocrine disruption (ED) a review (Charlton 2014,\n" +
|
||||
"ASB2016-762) was submitted that summarises results from regulatory and open scientific literature\n" +
|
||||
"studies covering in vitro and in vivo studies (level 2-5 of the OECD Conceptual Framework). According to this information metolachlor increased (1.5-fold) aromatase activity in JEG-3 cells (Laville et al.\n" +
|
||||
"2006, ASB2010-14391) and induced weak anti-androgenic activity in the MDA-kb2 reporter cell line\n" +
|
||||
"with a IC50 of 9.92 µM (IC50 of positive control flutamide: 0.51 µM) (Aït-Aïssa et al. 2010, ASB2015-\n" +
|
||||
"9562). Data from the Tox21 high throughput screening revealed just few postive findings in assays to\n" +
|
||||
"identify antagonists of the androgen receptor. An isolated result of this screening showed agonistic\n" +
|
||||
"activity on the thyroid stimulating hormone receptor, while Dalton et al. (2003, ASB2018-2832)\n" +
|
||||
"demonstrated that metolachlor induced CYP2B1/2 and CYP3A1/2 but did not affect T4, T3 or TSH.\n" +
|
||||
"After prepubertal exposure of male Wistar rats to metolachlor (Mathias et al. 2012, ASB2016-9890) a\n" +
|
||||
"statistically significant increase of serum hormone concentration was observed for testosterone (at the\n" +
|
||||
"dose 50 mg/kg) as well as a statistically significant decrease in the age of preputial separation at a dose\n" +
|
||||
"of 5 and 50 mg/kg. Furthermore a statistically significant increase for estradiol at a dose of 50 mg/kg\n" +
|
||||
"and for FSH at a dose of 5 and 50 mg/kg and morphological alterations of the seminiferous epithelium\n" +
|
||||
"were observed. Relative testicular weight was not altered. A statistically significant increase of relative\n" +
|
||||
"weights was observed in long-term studies with rats (Tisdel et al. 1983, TOX9800328 ). This finding\n" +
|
||||
"was attributed to lower terminal body weight. In mice a statistically significant decrease of the weight\n" +
|
||||
"seminal vesicle (Tisdel et al. 1982, TOX9800327) was shown after 24 month treatment with\n" +
|
||||
"metolachlor. In a mouse preimplantation embryo assay from open literature metolachlor increased the\n" +
|
||||
"percentage of apoptosis significantly and reduced the mean number of cells per embryo significantly\n" +
|
||||
"while the percentage of developing blastocytes was unaltered (Grennlee et al. 2004, ASB2016-9889).\n" +
|
||||
"In reproduvtive toxicity studies a retarded body weight development of the pups was observed, while\n" +
|
||||
"survival and normal morphological and functional development were not altered. No adverse effects\n" +
|
||||
"on male fertility were seen, however important parameters to assess effects on female fertility like\n" +
|
||||
"cyclicity, ovarian follicles as well as developmental landmarks in the offspring have not been investigated.";
|
||||
|
||||
Pattern p = Pattern.compile("([^\\s(]*?( \\w\\.?)?) et al\\.?");
|
||||
|
||||
Matcher matcher = p.matcher(text);
|
||||
|
||||
while (matcher.find()) {
|
||||
String match = matcher.group(1);
|
||||
System.out.println(match);
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
public void testAuthorSplitting(){
|
||||
|
||||
String word = "Porch JR, " + "Kendall TZ, " + "Krueger HO";
|
||||
|
||||
word.replaceAll(",", " ").replaceAll(" ", " ");
|
||||
|
||||
Pattern pattern = Pattern.compile("[A-ZÄÖÜ][\\wäöüéèê]{2,}( [A-ZÄÖÜ]{1,2}\\.)+");
|
||||
Matcher matcher = pattern.matcher(word);
|
||||
|
||||
List<String> allMatches = new ArrayList<>();
|
||||
while (matcher.find()) {
|
||||
allMatches.add(matcher.group());
|
||||
}
|
||||
|
||||
for(String name: allMatches) {
|
||||
if(name.length() >= 3) {
|
||||
System.out.println(name);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
-17
@@ -1,17 +0,0 @@
|
||||
package com.iqser.red.service.redaction.v1.server.redaction.utils;
|
||||
|
||||
import lombok.experimental.UtilityClass;
|
||||
|
||||
@UtilityClass
|
||||
public class TextNormalizationUtilities {
|
||||
|
||||
/**
|
||||
* Revert hyphenation due to line breaks.
|
||||
* @param text Text to be processed.
|
||||
* @return Text without line-break hyphenation.
|
||||
*/
|
||||
public static String removeHyphenLineBreaks(String text) {
|
||||
return text.replaceAll("\\s(\\S+)[\\-\\u00AD]\\R|\n\r(.+ )", "\n$1$2");
|
||||
}
|
||||
|
||||
}
|
||||
+2
-2
@@ -10,11 +10,11 @@ public class TextNormalizationUtilitiesTest {
|
||||
|
||||
String test = "Without these peo-\nple, this conference would not happen";
|
||||
Assertions.assertThat(TextNormalizationUtilities.removeHyphenLineBreaks(test))
|
||||
.contains("\npeople");
|
||||
.contains("people");
|
||||
|
||||
test = "Die\t\nFreiwillige\t Versicherung\t endet\t zudem\t für\t den\t ein\u00AD\nzelnen\tVersicherten\tmit\tder\tAufhebung\tdes\tVertra-\nges,\t seiner\t Unterstellung\t unter\t die\t obligatorische\t\nVersicherung\t oder\t seinem\t Ausschluss.";
|
||||
Assertions.assertThat(TextNormalizationUtilities.removeHyphenLineBreaks(test))
|
||||
.contains("\neinzelnen", "\nVertrages");
|
||||
.contains("einzelnen", "Vertrages");
|
||||
|
||||
}
|
||||
|
||||
|
||||
@@ -1,9 +1,9 @@
|
||||
configuration-service.url: "http://configuration-service-v1:8080"
|
||||
|
||||
ribbon:
|
||||
ConnectTimeout: 600000
|
||||
ReadTimeout: 600000
|
||||
|
||||
|
||||
spring:
|
||||
main:
|
||||
allow-bean-definition-overriding: true
|
||||
|
||||
+567
-512
File diff suppressed because it is too large
Load Diff
+1667
-1387
File diff suppressed because it is too large
Load Diff
+4
-3
@@ -1,7 +1,8 @@
|
||||
Crumrine
|
||||
Fine Organics Limited, Middlesbrough, United Kingdom
|
||||
Hunan Haili Chemical Industry Co., Ltd., Hunan, China
|
||||
Monthey Syngenta Crop Protection AG, Basel, Switzerland
|
||||
Syngenta Crop Protection, Monthey, Switzerland
|
||||
Fine Organics Limited, Middlesbrough, United Kingdom
|
||||
Syngenta Monthey Switzerland
|
||||
Hunan Haili Chemical Industry Co., Ltd., Hunan, China
|
||||
Syngenta Nantong, China
|
||||
Syngenta, Switzerland
|
||||
Syngenta Nantong, China
|
||||
+10
@@ -0,0 +1,10 @@
|
||||
Long-term
|
||||
Brown liquid
|
||||
Brown solid
|
||||
Hand-held
|
||||
Manual-Hand held
|
||||
Manual-Hand held
|
||||
Weight:
|
||||
Sprague
|
||||
Weight and length
|
||||
Aeration: Gentle
|
||||
-2
@@ -1,2 +0,0 @@
|
||||
guideline
|
||||
unpublished
|
||||
-2
@@ -1,2 +0,0 @@
|
||||
CTL
|
||||
determination of residues
|
||||
+3
-2
@@ -1,3 +1,4 @@
|
||||
published paper
|
||||
Fundamentals of Applied Toxicology
|
||||
in vitro
|
||||
in-vitro
|
||||
in-vitro
|
||||
published paper
|
||||
|
||||
+87
@@ -0,0 +1,87 @@
|
||||
7th ed.; The Iowa State University Press: Ames, IA
|
||||
Analytical chemistry
|
||||
Animal Reproduction
|
||||
Animal Reproduction Science
|
||||
Apidologie
|
||||
Aquatic toxicology
|
||||
Archives of Environmental Contamination and Toxicology
|
||||
ATLA
|
||||
Atmospheric. Environment
|
||||
Australasian Journal of Ecotoxicology
|
||||
Background lesions of laboratory Animals, A Color Atlas
|
||||
Biometrics
|
||||
Biometrika
|
||||
Birth Defects Res. B. Dev. Reprod. Toxicol.
|
||||
Crit Rev Toxicol
|
||||
Current approaches in the statistical analysis of ecotoxicity data: guidance to application
|
||||
Curr. Med. Chem.
|
||||
Dongbei Nongye Daxue Xuebao
|
||||
Ecotoxicology and Environmental Safety
|
||||
Environ and Molecular Mutagenesis
|
||||
Environ. Health Perspec.
|
||||
Environ Health Perspect
|
||||
Environ Health Perspect.
|
||||
Environ Health Perspect. 1
|
||||
Environmental Health
|
||||
Environmental Health Perspectives
|
||||
Environmental & Molecular Mutagenesis
|
||||
Environmental Pollution
|
||||
Environmental Science
|
||||
Environmental Science and Technology.
|
||||
Environmental Science & Technology
|
||||
Environmental Toxicology and Chemistry
|
||||
Environ Mol Muta- gen
|
||||
Environ. Sci. Technol.
|
||||
Environ Toxicol.
|
||||
Env. Mol. Mutagen
|
||||
Erna¨hrung
|
||||
Essays in Honor of Harold Hotelling
|
||||
Fish Sci
|
||||
Food Cosmet. Toxicol.
|
||||
Fundamentals of Applied Toxicology
|
||||
Fundamentals of Applied Toxicology1988
|
||||
High-Throughput Screening Methods in Toxicity Testing
|
||||
High-Throughput Screening Methods in Toxicity Testing. Hoboken, NJ: John Wiley & Sons
|
||||
http://www.iobc-wprs.org
|
||||
Irish Journal of Agricultural and Food Research
|
||||
J Econom
|
||||
J Endocrinol
|
||||
J. Invest. Derm
|
||||
Journal of agricultural and food chemistry
|
||||
Journal of Applied Entomology
|
||||
Journal of Environmental Science and Health
|
||||
Journal of Experimental Biology and Ecology
|
||||
Journal of Hazardous Materials
|
||||
Journal of the American College of Toxicology
|
||||
Journal of Toxicology and
|
||||
J Steroid Biochem Mol Biol
|
||||
Marine Pollution Bulletin
|
||||
Middle Atlantic Reproduction and Teratology Association
|
||||
Mol. Cell. Endocrinol.
|
||||
Mol Mutagen
|
||||
Mutagenesis
|
||||
Mutat Res
|
||||
Nonparametric Statistics for the Behavioral Sciences
|
||||
Principles and Procedures of Statistics
|
||||
Principles and Procedures of Statistics, A Biometrical Approach
|
||||
Proc Natl Acad Sci USA
|
||||
Progress in
|
||||
Psychopharmacologia
|
||||
Reproductive Toxicology
|
||||
RNA
|
||||
Science of the Total Environment
|
||||
Stain Technol
|
||||
Statistical Methods
|
||||
Statistical Methods,
|
||||
Steinberg P,
|
||||
Teratology
|
||||
The American Statistician
|
||||
Toxicol Chem
|
||||
Toxicol in Vitro
|
||||
Toxicological and Environmental Chemistry
|
||||
Toxicological Sciences
|
||||
Toxicologic Pathology
|
||||
Toxicology and Applied Pharmacology
|
||||
Toxicol Sci
|
||||
Toxicol Sci.
|
||||
Toxicol Sci. 1
|
||||
+9
-6
@@ -1,9 +1,12 @@
|
||||
in vivo
|
||||
in-vivo
|
||||
dermal penetration
|
||||
oral toxicity
|
||||
oral-toxicity
|
||||
acute toxicity
|
||||
acute-toxicity
|
||||
dermal penetration
|
||||
eco toxicity
|
||||
eco-toxicity
|
||||
eco-toxicity
|
||||
Env. Mol. Mutagen,
|
||||
in vivo
|
||||
in-vivo
|
||||
ld
|
||||
oral toxicity
|
||||
oral-toxicity
|
||||
Processes & Impacts
|
||||
|
||||
+48
@@ -0,0 +1,48 @@
|
||||
Bartlett’s Test
|
||||
Bonferroni-Holm Adjustment
|
||||
Cochran-Armitage test
|
||||
Cochran-Armitage Trend Step-Down Test
|
||||
Dunnett's Multiple Comparison test
|
||||
Dunnett’s test
|
||||
Dunnett's "t" test
|
||||
Dunnett test
|
||||
Fisher Count-AllTM c
|
||||
Fisher Scientific Company
|
||||
Fisher’s Exact
|
||||
Fisher's exact test
|
||||
Fisher’s Exact Test
|
||||
Ham's F10
|
||||
Heinz body
|
||||
Heinz body determinations
|
||||
Jonckheere-Terpstra test (step-down)
|
||||
Jonckheere Trend Test
|
||||
Kay and Calandra system
|
||||
Klimisch code
|
||||
Kolmogorov-Smirnov's test
|
||||
Krebs cycle
|
||||
Litchfield and Wilcoxon method
|
||||
Magnusson and Kligman
|
||||
Magnusson & Kligman
|
||||
MAGNUSSON & KLINGMAN METHOD
|
||||
Mann-Whitney's test
|
||||
Maximisation test, Buehler
|
||||
Method of Magnusson and Kligman
|
||||
methodology validated at Smithers Viscient.
|
||||
n Williams' medium E a
|
||||
Patterson-Kelly twinshell blender
|
||||
Shapiro-Wilks and Levene’s tests
|
||||
Shapiro-Wilks’ Test
|
||||
Steel’s test
|
||||
Tamhane-Dunnett
|
||||
Tamhane-Dunnett test
|
||||
the method Davies
|
||||
Vogel-Bonner Medium E
|
||||
Welch’s test
|
||||
Welch t-test
|
||||
Whitney test
|
||||
Wilcoxon and Ansari-Bradley statistics
|
||||
Williams multiple sequential t-test
|
||||
Williams' test
|
||||
Williams t-test
|
||||
William test
|
||||
Winkler titration technique,
|
||||
+10
-5
@@ -1,4 +1,3 @@
|
||||
a. sylvaticus
|
||||
african clawed frog
|
||||
agalychnis callidryas
|
||||
albino rat
|
||||
@@ -15,6 +14,7 @@ apodemus flavicollis
|
||||
apodemus syl vaticus
|
||||
apodemus sylvaticus
|
||||
arvicola terrestris
|
||||
a. sylvaticus
|
||||
avian
|
||||
bank vole
|
||||
bird
|
||||
@@ -23,6 +23,7 @@ bluegill
|
||||
bluegill sunfish
|
||||
bobwhite
|
||||
bobwhite quail
|
||||
Bovine
|
||||
brachydanio rerio
|
||||
brown hare
|
||||
bufo americanus
|
||||
@@ -52,10 +53,12 @@ crocidura russula
|
||||
crucian carp
|
||||
cyprinodon variegatus
|
||||
cyprinus carpio
|
||||
(Danio rerio
|
||||
dog
|
||||
dogs
|
||||
duck
|
||||
ducks
|
||||
Environmental & Molecular Mutagenesis
|
||||
european brown hare
|
||||
european rabbit
|
||||
fathead minnow
|
||||
@@ -121,14 +124,13 @@ myodes glareolus
|
||||
northern bobwhite
|
||||
o. cuniculus
|
||||
o. mykiss
|
||||
o. tshawytscha
|
||||
oncorhynchus
|
||||
oncorhynchus mykiss
|
||||
oncorhynchus tshawytscha
|
||||
oryctolagus cuniculus
|
||||
oryzias melastigma
|
||||
oryzias melastigma larvae
|
||||
p. promelas
|
||||
o. tshawytscha
|
||||
pagrus major
|
||||
palumbus
|
||||
pig
|
||||
@@ -139,10 +141,10 @@ pimephales promela
|
||||
pimephales promelas
|
||||
poecilia reticulata
|
||||
poultry
|
||||
p. promelas
|
||||
pseudacris
|
||||
pseudacris triseriata
|
||||
quail
|
||||
r. catesbeiana
|
||||
rabbit
|
||||
rabbits
|
||||
rainbow trout
|
||||
@@ -152,6 +154,7 @@ rana limnocharis
|
||||
rana pipiens
|
||||
rat
|
||||
rats
|
||||
r. catesbeiana
|
||||
reptile
|
||||
reptiles
|
||||
ricefish
|
||||
@@ -168,6 +171,7 @@ sorex araneus
|
||||
spea multiplicata
|
||||
spotted march frog
|
||||
tadpoles
|
||||
Taeniopygia guttata
|
||||
terrestrial vertrebrates
|
||||
toad
|
||||
treefrog
|
||||
@@ -187,5 +191,6 @@ wood pigeon
|
||||
xenopus laevis
|
||||
xenpous leavis
|
||||
yellow-necked mouse
|
||||
Zebra Finch
|
||||
zebra fish
|
||||
zebrafish
|
||||
zebrafish
|
||||
+235
-97
@@ -5,131 +5,269 @@ import com.iqser.red.service.redaction.v1.server.redaction.model.Section
|
||||
global Section section
|
||||
|
||||
|
||||
// --------------------------------------- CBI rules -------------------------------------------------------------------
|
||||
|
||||
rule "1: Redacted because Section contains Vertebrate"
|
||||
when
|
||||
Section(matchesType("vertebrate"))
|
||||
then
|
||||
section.redact("name", 1, "Redacted because Section contains Vertebrate", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redact("address", 1, "Redacted because Section contains Vertebrate", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
end
|
||||
when
|
||||
Section(matchesType("vertebrate"))
|
||||
then
|
||||
section.redact("CBI_author", 1, "Vertebrate found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redact("CBI_address", 1, "Vertebrate found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
end
|
||||
|
||||
|
||||
rule "2: Not Redacted because Section contains no Vertebrate"
|
||||
when
|
||||
Section(!matchesType("vertebrate"))
|
||||
then
|
||||
section.redactNot("name", 2, "Not Redacted because Section contains no Vertebrate");
|
||||
section.redactNot("address", 2, "Not Redacted because Section contains no Vertebrate");
|
||||
end
|
||||
when
|
||||
Section(!matchesType("vertebrate"))
|
||||
then
|
||||
section.redactNot("CBI_author", 2, "No Vertebrate found");
|
||||
section.redactNot("CBI_address", 2, "No Vertebrate found");
|
||||
end
|
||||
|
||||
|
||||
rule "3: Do not redact Names and Addresses if no redaction Indicator is contained"
|
||||
when
|
||||
Section(matchesType("vertebrate"), matchesType("no_redaction_indicator"))
|
||||
then
|
||||
section.redactNot("name", 3, "Vertebrate was found, but also a no redaction indicator");
|
||||
section.redactNot("address", 3, "Vertebrate was found, but also a no redaction indicator");
|
||||
end
|
||||
when
|
||||
Section(matchesType("vertebrate"), matchesType("no_redaction_indicator"))
|
||||
then
|
||||
section.redactNot("CBI_author", 3, "Vertebrate and No Redaction Indicator found");
|
||||
section.redactNot("CBI_address", 3, "Vertebrate and No Redaction Indicator found");
|
||||
end
|
||||
|
||||
|
||||
rule "4: Redact Names and Addresses if no_redaction_indicator and redaction_indicator is contained"
|
||||
when
|
||||
Section(matchesType("vertebrate"), matchesType("no_redaction_indicator"), matchesType("redaction_indicator"))
|
||||
then
|
||||
section.redact("name", 4, "Vertebrate was found and no_redaction_indicator and redaction_indicator", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redact("address", 4, "Vertebrate was found and no_redaction_indicator and redaction_indicator", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
end
|
||||
rule "4: Do not redact Names and Addresses if no redaction Indicator is contained"
|
||||
when
|
||||
Section(matchesType("vertebrate"), matchesType("published_information"))
|
||||
then
|
||||
section.redactNot("CBI_author", 4, "Vertebrate and Published Information found");
|
||||
section.redactNot("CBI_address", 4, "Vertebrate and Published Information found");
|
||||
end
|
||||
|
||||
|
||||
rule "5: Do not redact in guideline sections"
|
||||
when
|
||||
Section(headlineContainsWord("guideline") || headlineContainsWord("Guidance"))
|
||||
then
|
||||
section.redactNot("name", 5, "Section is a guideline section.");
|
||||
section.redactNot("address", 5, "Section is a guideline section.");
|
||||
end
|
||||
rule "5: Redact Names and Addresses if no_redaction_indicator and redaction_indicator is contained"
|
||||
when
|
||||
Section(matchesType("vertebrate"), matchesType("no_redaction_indicator"), matchesType("redaction_indicator"))
|
||||
then
|
||||
section.redact("CBI_author", 5, "Vertebrate and Redaction Indicator found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redact("CBI_address", 5, "Vertebrate and Redaction Indicator found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
end
|
||||
|
||||
|
||||
rule "6: Redact contact information if applicant is found"
|
||||
when
|
||||
Section(headlineContainsWord("applicant") || text.contains("Applicant") || headlineContainsWord("Primary contact") || headlineContainsWord("Alternative contact"))
|
||||
then
|
||||
section.redactLineAfter("Name:", "address", 6, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redactBetween("Address:", "Contact", "address", 6, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redactLineAfter("Contact point:", "address", 6, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redactLineAfter("Phone:", "address", 6, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redactLineAfter("Fax:", "address", 6, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redactLineAfter("Tel.:", "address", 6, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redactLineAfter("Tel:", "address", 6, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redactLineAfter("E-mail:", "address", 6, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redactLineAfter("Email:", "address", 6, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redactLineAfter("e-mail:", "address", 6, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redactLineAfter("E-mail address:", "address", 6, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redactLineAfter("Contact:", "address", 6, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redactLineAfter("Alternative contact:", "address", 6, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redactLineAfter("Telephone number:", "address", 6, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redactLineAfter("Telephone No:", "address", 6, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redactLineAfter("Fax number:", "address", 6, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redactLineAfter("Telephone:", "address", 6, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redactLineAfter("Company:", "address", 6, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redactBetween("No:", "Fax", "address", 6, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redactBetween("Contact:", "Tel.:", "address", 6, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
end
|
||||
|
||||
|
||||
rule "7: Redact contact information if Producer is found"
|
||||
when
|
||||
Section(text.toLowerCase().contains("producer of the plant protection") || text.toLowerCase().contains("producer of the active substance") || text.contains("Manufacturer of the active substance") || text.contains("Manufacturer:") || text.contains("Producer or producers of the active substance"))
|
||||
then
|
||||
section.redactLineAfter("Name:", "address", 7, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redactBetween("Address:", "Contact", "address", 7, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redactBetween("Contact:", "Phone", "address", 7, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redactBetween("Contact:", "Telephone number:", "address", 7, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redactBetween("Address:", "Manufacturing", "address", 7, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redactLineAfter("Telephone:", "address", 7, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redactLineAfter("Phone:", "address", 7, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redactLineAfter("Fax:", "address", 7, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redactLineAfter("E-mail:", "address", 7, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redactLineAfter("Contact:", "address", 7, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redactLineAfter("Fax number:", "address", 7, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redactLineAfter("Telephone number:", "address", 7, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redactLineAfter("Tel:", "address", 7, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redactBetween("No:", "Fax", "address", 7, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
end
|
||||
|
||||
|
||||
rule "8: Not redacted because Vertebrate Study = N"
|
||||
rule "6: Not redacted because Vertebrate Study = N"
|
||||
when
|
||||
Section(rowEquals("Vertebrate study Y/N", "N") || rowEquals("Vertebrate study Y/N", "No"))
|
||||
then
|
||||
section.redactNotCell("Author(s)", 8, "name", "Not redacted because row is not a vertebrate study");
|
||||
section.redactNot("address", 8, "Not redacted because row is not a vertebrate study");
|
||||
section.highlightCell("Vertebrate study Y/N", 8, "hint_only");
|
||||
section.redactNotCell("Author(s)", 6, "CBI_author", true, "Not redacted because row is not a vertebrate study");
|
||||
section.redactNot("CBI_author", 6, "Not redacted because row is not a vertebrate study");
|
||||
section.redactNot("CBI_address", 6, "Not redacted because row is not a vertebrate study");
|
||||
section.highlightCell("Vertebrate study Y/N", 6, "hint_only");
|
||||
end
|
||||
|
||||
|
||||
rule "9: Redact if must redact entry is found"
|
||||
when
|
||||
Section(matchesType("must_redact"))
|
||||
then
|
||||
section.redact("name", 9, "must_redact entry was found.", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redact("address", 9, "must_redact entry was found.", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
end
|
||||
rule "7: Redact if must redact entry is found"
|
||||
when
|
||||
Section(matchesType("must_redact"))
|
||||
then
|
||||
section.redact("CBI_author", 7, "must_redact entry was found.", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redact("CBI_address", 7, "must_redact entry was found.", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
end
|
||||
|
||||
|
||||
rule "10: Redact Authors and Addresses in Reference Table if it is a Vertebrate study"
|
||||
rule "8: Redact Authors and Addresses in Reference Table if it is a Vertebrate study"
|
||||
when
|
||||
Section(rowEquals("Vertebrate study Y/N", "Y") || rowEquals("Vertebrate study Y/N", "Yes"))
|
||||
then
|
||||
section.redactCell("Author(s)", 10, "name", "Redacted because row is a vertebrate study", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redact("address", 10, "Redacted because row is a vertebrate study", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.highlightCell("Vertebrate study Y/N", 10, "must_redact");
|
||||
section.redactCell("Author(s)", 8, "CBI_author", true, "Redacted because row is a vertebrate study", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redact("CBI_address", 8, "Redacted because row is a vertebrate study", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.highlightCell("Vertebrate study Y/N", 8, "must_redact");
|
||||
end
|
||||
|
||||
|
||||
rule "11: Redact sponsor company"
|
||||
rule "9: Redact sponsor company"
|
||||
when
|
||||
Section(searchText.toLowerCase().contains("batches produced at"))
|
||||
then
|
||||
section.redactIfPrecededBy("batches produced at", "sponsor", 11, "Redacted because it represents a sponsor company", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redactIfPrecededBy("batches produced at", "CBI_sponsor", 9, "Redacted because it represents a sponsor company", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.addHintAnnotation("batches produced at", "must_redact");
|
||||
end
|
||||
|
||||
|
||||
rule "10: Redact determination of residues"
|
||||
when
|
||||
Section((
|
||||
searchText.toLowerCase.contains("determination of residues") ||
|
||||
searchText.toLowerCase.contains("determination of total residues")
|
||||
) && (
|
||||
searchText.toLowerCase.contains("livestock") ||
|
||||
searchText.toLowerCase.contains("live stock") ||
|
||||
searchText.toLowerCase.contains("tissue") ||
|
||||
searchText.toLowerCase.contains("tissues") ||
|
||||
searchText.toLowerCase.contains("liver") ||
|
||||
searchText.toLowerCase.contains("muscle") ||
|
||||
searchText.toLowerCase.contains("bovine") ||
|
||||
searchText.toLowerCase.contains("ruminant") ||
|
||||
searchText.toLowerCase.contains("ruminants")
|
||||
))
|
||||
then
|
||||
section.redact("CBI_author", 10, "Determination of residues was found.", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redact("CBI_address", 10, "Determination of residues was found.", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.addHintAnnotation("determination of residues", "must_redact");
|
||||
section.addHintAnnotation("livestock", "must_redact");
|
||||
section.addHintAnnotation("live stock", "must_redact");
|
||||
section.addHintAnnotation("tissue", "must_redact");
|
||||
section.addHintAnnotation("tissues", "must_redact");
|
||||
section.addHintAnnotation("liver", "must_redact");
|
||||
section.addHintAnnotation("muscle", "must_redact");
|
||||
section.addHintAnnotation("bovine", "must_redact");
|
||||
section.addHintAnnotation("ruminant", "must_redact");
|
||||
section.addHintAnnotation("ruminants", "must_redact");
|
||||
end
|
||||
|
||||
|
||||
rule "11: Redact if CTL/* or BL/* was found"
|
||||
when
|
||||
Section(searchText.contains("CTL/") || searchText.contains("BL/"))
|
||||
then
|
||||
section.redact("CBI_author", 11, "Laboraty for vertebrate studies found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.redact("CBI_address", 11, "Laboraty for vertebrate studies found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
|
||||
section.addHintAnnotation("CTL", "must_redact");
|
||||
section.addHintAnnotation("BL", "must_redact");
|
||||
end
|
||||
|
||||
|
||||
rule "12: Add recommendation for et al. author"
|
||||
when
|
||||
Section(searchText.contains("et al."))
|
||||
then
|
||||
section.addRecommendationByRegEx("\\b([A-ZÄÖÜ][^\\s\\.,]+( [A-ZÄÖÜ]\\.?)?( [A-ZÄÖÜ]\\.?)?) et al\\.?", false, 1, "CBI_author");
|
||||
end
|
||||
|
||||
// --------------------------------------- PII rules -------------------------------------------------------------------
|
||||
|
||||
|
||||
rule "13: Redacted PII Personal Identification Information"
|
||||
when
|
||||
Section(matchesType("PII"))
|
||||
then
|
||||
section.redact("PII", 13, "PII (Personal Identification Information) found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
end
|
||||
|
||||
|
||||
rule "14: Redact Emails by RegEx"
|
||||
when
|
||||
Section(searchText.contains("@"))
|
||||
then
|
||||
section.redactByRegEx("\\b[A-Z0-9._%+-]+@[A-Z0-9.-]+\\.[A-Z]{2,4}\\b", true, 0, "PII", 14, "PII (Personal Identification Information) found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
end
|
||||
|
||||
|
||||
rule "15: Redact contact information"
|
||||
when
|
||||
Section(text.contains("Contact point:")
|
||||
|| text.contains("Phone:")
|
||||
|| text.contains("Fax:")
|
||||
|| text.contains("Tel.:")
|
||||
|| text.contains("Tel:")
|
||||
|| text.contains("E-mail:")
|
||||
|| text.contains("Email:")
|
||||
|| text.contains("e-mail:")
|
||||
|| text.contains("E-mail address:")
|
||||
|| text.contains("Alternative contact:")
|
||||
|| text.contains("Telephone number:")
|
||||
|| text.contains("Telephone No:")
|
||||
|| text.contains("Fax number:")
|
||||
|| text.contains("Telephone:")
|
||||
|| text.contains("European contact:"))
|
||||
then
|
||||
section.redactLineAfter("Contact point:", "PII", 15, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactLineAfter("Phone:", "PII", 15, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactLineAfter("Fax:", "PII", 15, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactLineAfter("Tel.:", "PII", 15, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactLineAfter("Tel:", "PII", 15, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactLineAfter("E-mail:", "PII", 15, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactLineAfter("Email:", "PII", 15, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactLineAfter("e-mail:", "PII", 15, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactLineAfter("E-mail address:", "PII", 15, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactLineAfter("Contact:", "PII", 15, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactLineAfter("Alternative contact:", "PII", 15, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactLineAfter("Telephone number:", "PII", 15, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactLineAfter("Telephone No:", "PII", 15, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactLineAfter("Fax number:", "PII", 15, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactLineAfter("Telephone:", "PII", 15, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactBetween("No:", "Fax", "PII", 15, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactBetween("Contact:", "Tel.:", "PII", 15, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactLineAfter("European contact:", "PII", 15, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
end
|
||||
|
||||
|
||||
rule "16: Redact contact information if applicant is found"
|
||||
when
|
||||
Section(headlineContainsWord("applicant") || text.contains("Applicant") || headlineContainsWord("Primary contact") || headlineContainsWord("Alternative contact") || text.contains("Telephone number:"))
|
||||
then
|
||||
section.redactLineAfter("Contact point:", "PII", 16, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactLineAfter("Phone:", "PII", 16, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactLineAfter("Fax:", "PII", 16, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactLineAfter("Tel.:", "PII", 16, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactLineAfter("Tel:", "PII", 16, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactLineAfter("E-mail:", "PII", 16, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactLineAfter("Email:", "PII", 16, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactLineAfter("e-mail:", "PII", 16, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactLineAfter("E-mail address:", "PII", 16, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactLineAfter("Contact:", "PII", 16, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactLineAfter("Alternative contact:", "PII", 16, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactLineAfter("Telephone number:", "PII", 16, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactLineAfter("Telephone No:", "PII", 16, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactLineAfter("Fax number:", "PII", 16, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactLineAfter("Telephone:", "PII", 16, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactBetween("No:", "Fax", "PII", 16, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactBetween("Contact:", "Tel.:", "PII", 16, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactLineAfter("European contact:", "PII", 16, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
end
|
||||
|
||||
|
||||
rule "17: Redact contact information if Producer is found"
|
||||
when
|
||||
Section(text.toLowerCase().contains("producer of the plant protection") || text.toLowerCase().contains("producer of the active substance") || text.contains("Manufacturer of the active substance") || text.contains("Manufacturer:") || text.contains("Producer or producers of the active substance"))
|
||||
then
|
||||
section.redactLineAfter("Contact:", "PII", 17, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactLineAfter("Telephone:", "PII", 17, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactLineAfter("Phone:", "PII", 17, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactLineAfter("Fax:", "PII", 17, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactLineAfter("E-mail:", "PII", 17, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactLineAfter("Contact:", "PII", 17, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactLineAfter("Fax number:", "PII", 17, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactLineAfter("Telephone number:", "PII", 17, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactLineAfter("Tel:", "PII", 17, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
section.redactBetween("No:", "Fax", "PII", 17, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
end
|
||||
|
||||
|
||||
rule "18: Redact AUTHOR(S)"
|
||||
when
|
||||
Section(searchText.contains("AUTHOR(S):"))
|
||||
then
|
||||
section.redactLinesBetween("AUTHOR(S):", "COMPLETION DATE:", "PII", 18, true, "AUTHOR(S) was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
end
|
||||
|
||||
|
||||
rule "19: Redact PERFORMING LABORATORY"
|
||||
when
|
||||
Section(searchText.contains("PERFORMING LABORATORY:"))
|
||||
then
|
||||
section.redactBetween("PERFORMING LABORATORY:", "LABORATORY PROJECT ID:", "PII", 19, true, "PERFORMING LABORATORY was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
end
|
||||
|
||||
|
||||
rule "20: Redact On behalf of Sequani Ltd.:"
|
||||
when
|
||||
Section(searchText.contains("On behalf of Sequani Ltd.: Name Title"))
|
||||
then
|
||||
section.redactBetween("On behalf of Sequani Ltd.: Name Title", "On behalf of", "PII", 20, false , "PII (Personal Identification Information) found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
end
|
||||
|
||||
|
||||
rule "21: Redact On behalf of Syngenta Ltd.:"
|
||||
when
|
||||
Section(searchText.contains("On behalf of Syngenta Ltd.: Name Title"))
|
||||
then
|
||||
section.redactBetween("On behalf of Syngenta Ltd.: Name Title", "Study dates", "PII", 21, false , "PII (Personal Identification Information) found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
|
||||
end
|
||||
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Reference in New Issue
Block a user