Compare commits

...
Author SHA1 Message Date
Dominique Eifländer cc3ad099ff Log every exception that occurs on image service calls 2021-04-12 11:51:28 +02:00
Dominique Eiflaender 9696a421fc Pull request #134: RED-1260
Merge in RED/redaction-service from RED-1260 to master

* commit 'ae28555bf4c740d9872e26fb27615fbf7402f002':
  RED-1260: First steps for image classification
  Integrate image classification
2021-04-09 15:11:49 +02:00
Dominique Eifländer ae28555bf4 RED-1260: First steps for image classification 2021-04-09 13:37:00 +02:00
Dominique Eifländer 2558b3cab8 Integrate image classification 2021-04-09 11:44:12 +02:00
Dominique Eiflaender 2c92f03f2a Pull request #133: Do not remove images on reanalysis
Merge in RED/redaction-service from DoNotRemoveImages2 to master

* commit 'fc70f972da887370f011ad1998e209ba676d90db':
  Do not remove images on reanalysis
2021-04-08 16:02:05 +02:00
Dominique Eifländer fc70f972da Do not remove images on reanalysis 2021-04-08 15:47:11 +02:00
Dominique Eiflaender 0e8c28f8fd Pull request #132: Do not remove images at reanalysis
Merge in RED/redaction-service from ImageReanalysisFix to master

* commit 'e7c24487c755ab84c0f1efe5a0c6e9d4794d4c0f':
  Do not remove images at reanalysis
2021-04-08 15:37:13 +02:00
Dominique Eifländer e7c24487c7 Do not remove images at reanalysis 2021-04-08 15:22:25 +02:00
Dominique Eiflaender fc10152145 Pull request #131: RED-1276: Fixed annotation position problem for 270° rotated pages
Merge in RED/redaction-service from RED-1276 to master

* commit '8375c04829347f43c2151e80dd4f4571b0c2757d':
  RED-1276: Fixed annotation position problem for 270° rotated pages
2021-04-08 10:49:40 +02:00
Dominique Eifländer 8375c04829 RED-1276: Fixed annotation position problem for 270° rotated pages 2021-04-08 10:30:51 +02:00
Dominique Eiflaender 57a79719d4 Pull request #130: RED-1061: Upgraded to newest spring boot/cloud and reenabled actuator metrics
Merge in RED/redaction-service from RED-1061 to master

* commit '0638877d0afb3b577f7be5467cde1d1b34044772':
  RED-1061: Upgraded to newest spring boot/cloud and reenabled actuator metrics
2021-03-15 13:37:30 +01:00
Dominique Eifländer 0638877d0a RED-1061: Upgraded to newest spring boot/cloud and reenabled actuator metrics 2021-03-15 13:22:14 +01:00
Dominique Eiflaender 6c33b7e2ae Pull request #129: RED-1170: Do not use non dictionay hints vor local analysis
Merge in RED/redaction-service from RED-1170 to master

* commit 'aac4d0437e2f9e81f5f4a814dbc86e47b07f57d7':
  RED-1170: Do not use non dictionay hints vor local analysis
2021-03-15 11:56:38 +01:00
Dominique Eifländer aac4d0437e RED-1170: Do not use non dictionay hints vor local analysis 2021-03-15 11:35:40 +01:00
Dominique Eiflaender 93dcd6b9f7 Pull request #128: Fixed importing caseinsensitive dictionaties
Merge in RED/redaction-service from caseInSensFix to master

* commit 'bd56364cc3bfa25084069c79bef107869bdc5574':
  Fixed importing caseinsensitive dictionaties
2021-03-12 15:25:43 +01:00
Dominique Eifländer bd56364cc3 Fixed importing caseinsensitive dictionaties 2021-03-12 15:08:34 +01:00
Dominique Eiflaender 91942730e8 Pull request #127: Fixed renalysis for caseinsensitive dictionary entries
Merge in RED/redaction-service from caseinsensitiveValues to master

* commit 'f4ea236fc587df34eda20ead5762737bca447f3d':
  Fixed renalysis for caseinsensitive dictionary entries
2021-03-11 14:15:17 +01:00
Dominique Eifländer f4ea236fc5 Fixed renalysis for caseinsensitive dictionary entries 2021-03-11 13:57:15 +01:00
Dominique Eiflaender 9db74628a4 Pull request #126: First steps for incremental analysis
Merge in RED/redaction-service from incrementAnalysis to master

* commit '511092b9e76d58af33dfff90c1133b92e850d47c':
  First steps for incremental analysis
2021-03-09 09:12:13 +01:00
Dominique Eifländer 511092b9e7 First steps for incremental analysis 2021-03-08 16:31:37 +01:00
Dominique Eiflaender dd4f1b34e1 Pull request #125: RED-1090: Return text with areas and sectionNumber
Merge in RED/redaction-service from RED-1090 to master

* commit '0dd47111c5294d9a9a0a10e174c2832436983205':
  RED-1090: Return text with areas and sectionNumber
2021-02-25 15:10:58 +01:00
Dominique Eifländer 0dd47111c5 RED-1090: Return text with areas and sectionNumber 2021-02-25 14:55:53 +01:00
Dominique Eiflaender 7d507c8fda Pull request #124: Adjusted rules to new requirements, add possibility to addRedaction for rules
Merge in RED/redaction-service from NewRequirementsRules to master

* commit 'b6a13d1ff8a55f1b5ef528af5ea726b5e17b4950':
  Adjusted rules to new requirements, add possibility to addRedaction for rules
2021-02-18 10:48:26 +01:00
Dominique Eifländer b6a13d1ff8 Adjusted rules to new requirements, add possibility to addRedaction for rules 2021-02-18 10:33:38 +01:00
Dominique Eiflaender 06e418c34e Pull request #123: RED-1070: Fixed not finding annotation on not classified textblocks
Merge in RED/redaction-service from RED-1070 to master

* commit 'de1dea7ac323dc005baeb0660cc492ab84a88164':
  RED-1070: Fixed not finding annotation on not classified textblocks
2021-02-18 09:18:59 +01:00
Dominique Eifländer de1dea7ac3 RED-1070: Fixed not finding annotation on not classified textblocks 2021-02-18 08:58:51 +01:00
Dominique Eiflaender 53509f072e Pull request #122: RED-1055: Enabled to force redact ignore annotations
Merge in RED/redaction-service from RED-1055 to master

* commit 'e0fba8d38ce9858235ca84182f4587d472890ef1':
  RED-1055: Enabled to force redact ignore annotations
2021-02-12 10:55:04 +01:00
Dominique Eifländer e0fba8d38c RED-1055: Enabled to force redact ignore annotations 2021-02-12 10:41:32 +01:00
Lena  Maldacker 8989191314 Pull request #121: Add hint annotation by reg-ex and expand to hint annotation by reg-ex
Merge in RED/redaction-service from dismissGen to master

* commit '0f263c69b8f2eb7201f062cc263c8d06b7a710a1':
  Add hint annotation by reg-ex and expand to hint annotation by reg-ex
2021-02-11 17:22:55 +01:00
lmaldacker 0f263c69b8 Add hint annotation by reg-ex and expand to hint annotation by reg-ex 2021-02-11 16:53:07 +01:00
Kresnadi Budisantoso ea1c2898bc Remove duplicate build tasks in bamboo specs 2021-02-11 14:11:22 +01:00
Dominique Eiflaender 6d9ed080ce Pull request #120: RED-1039: Fixed finding textpositions, RED-1042: Fixed get rectangles per line
Merge in RED/redaction-service from RED-1039 to master

* commit '00b0cb160342f1857ac0e523f994918057d5fc6b':
  RED-1039: Fixed finding textpositions, RED-1042: Fixed get rectangles per line
2021-02-08 14:50:02 +01:00
Dominique Eifländer 00b0cb1603 RED-1039: Fixed finding textpositions, RED-1042: Fixed get rectangles per line 2021-02-08 14:09:11 +01:00
Dominique Eiflaender 5ecf21290c Pull request #119: RED-1046: Ignore dictionary rank for words that are explicitly set in the rules
Merge in RED/redaction-service from RED-1046 to master

* commit '8965e7654867ff666c54c841319376c5899e7326':
  RED-1046: Ignore dictionary rank for words that are explicitly set in the rules
2021-02-05 15:08:15 +01:00
Dominique Eifländer 8965e76548 RED-1046: Ignore dictionary rank for words that are explicitly set in the rules 2021-02-05 14:55:16 +01:00
Dominique Eiflaender ba8c4dc240 Pull request #118: RED-1045: Enabled to redact in headers and footers
Merge in RED/redaction-service from RED-1045 to master

* commit '577db37b11dfd0243d22986a6d224700f0b49693':
  RED-1045: Enabled to redact in headers and footers
2021-02-05 13:16:55 +01:00
Dominique Eifländer 577db37b11 RED-1045: Enabled to redact in headers and footers 2021-02-05 13:05:12 +01:00
Dominique Eiflaender 154e09b843 Pull request #117: Fixed several table extraction problems
Merge in RED/redaction-service from tableExtractionImprovement to master

* commit 'a101b98a400b2a35635f2c5e0e894ac849288c3b':
  Fixed several table extraction problems
2021-02-04 15:21:12 +01:00
Dominique Eifländer a101b98a40 Fixed several table extraction problems 2021-02-04 15:08:48 +01:00
Dominique Eiflaender 76ecfdabd3 Pull request #116: Fixed table extraction problems
Merge in RED/redaction-service from TableExtractionProbemFix to master

* commit 'fc2ac03691871a8a1f3c8a29756e3a60e63e16bf':
  Fixed table extraction problems
2021-02-03 14:49:01 +01:00
57 changed files with 1682 additions and 384 deletions
@@ -72,14 +72,6 @@ public class PlanSpec {
.jobs(new Job("Default Job",
new BambooKey("JOB1"))
.tasks(
new ScriptTask()
.description("Clean")
.inlineBody("#!/bin/bash\n" +
"set -e\n" +
"rm -rf ./*"),
new VcsCheckoutTask()
.description("Checkout Default Repository")
.checkoutItems(new CheckoutItem().defaultRepository()),
new ScriptTask()
.description("Clean")
.inlineBody("#!/bin/bash\n" +
+2 -2
View File
@@ -5,7 +5,7 @@
<parent>
<artifactId>platform-dependency</artifactId>
<groupId>com.iqser.red</groupId>
<version>1.0.2</version>
<version>1.0.8</version>
</parent>
<modelVersion>4.0.0</modelVersion>
@@ -32,7 +32,7 @@
<dependency>
<groupId>com.iqser.red</groupId>
<artifactId>platform-commons-dependency</artifactId>
<version>1.1.7</version>
<version>1.2.5</version>
<scope>import</scope>
<type>pom</type>
</dependency>
@@ -14,5 +14,6 @@ public class AnalyzeResult {
private int numberOfPages;
private RedactionLog redactionLog;
private SectionGrid sectionGrid;
private Text text;
}
@@ -0,0 +1,19 @@
package com.iqser.red.service.redaction.v1.model;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@Builder
@AllArgsConstructor
@NoArgsConstructor
public class ManualForceRedact {
private String id;
private String user;
private Status status;
private String legalBasis;
}
@@ -1,5 +1,5 @@
package com.iqser.red.service.redaction.v1.model;
public enum ManualRedactionType {
ADD, REMOVE
ADD, REMOVE, FORCE_REDACT
}
@@ -20,6 +20,9 @@ public class ManualRedactions {
@Builder.Default
private Set<IdRemoval> idsToRemove = new HashSet<>();
@Builder.Default
private Set<ManualForceRedact> forceRedacts = new HashSet<>();
@Builder.Default
private Set<ManualRedactionEntry> entriesToAdd = new HashSet<>();
@@ -0,0 +1,15 @@
package com.iqser.red.service.redaction.v1.model;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@Builder
@NoArgsConstructor
@AllArgsConstructor
public class ReanalyzeResult {
private RedactionLog redactionLog;
}
@@ -40,4 +40,9 @@ public class RedactionLogEntry {
@Builder.Default
private List<Comment> comments = new ArrayList<>();
private int startOffset;
private int endOffset;
private boolean isImage;
}
@@ -0,0 +1,22 @@
package com.iqser.red.service.redaction.v1.model;
import java.time.OffsetDateTime;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@Builder
@NoArgsConstructor
@AllArgsConstructor
public class RenalyzeRequest {
private byte[] document;
private String ruleSetId;
private ManualRedactions manualRedactions;
private Text text;
private RedactionLog redactionLog;
private OffsetDateTime lastProcessed;
}
@@ -0,0 +1,33 @@
package com.iqser.red.service.redaction.v1.model;
import lombok.AllArgsConstructor;
import lombok.Data;
import lombok.NoArgsConstructor;
import lombok.NonNull;
import lombok.RequiredArgsConstructor;
@Data
@RequiredArgsConstructor
@NoArgsConstructor
@AllArgsConstructor
public class SectionArea {
@NonNull
private Point topLeft;
@NonNull
private float width;
@NonNull
private float height;
@NonNull
private int page;
private String header;
public boolean contains(Rectangle other) {
return page == other.getPage() && this.topLeft.getX() <= other.getTopLeft().getX() && this.topLeft.getX() + this.getWidth() >= other.getTopLeft().getX() + other.getWidth() && this.getTopLeft().getY() <= other.getTopLeft().getY() && this.getTopLeft().getY() + this.getHeight() >= other.getTopLeft().getY() + other.getHeight();
}
}
@@ -0,0 +1,25 @@
package com.iqser.red.service.redaction.v1.model;
import java.util.ArrayList;
import java.util.List;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@Builder
@NoArgsConstructor
@AllArgsConstructor
public class SectionText {
private int sectionNumber;
private String text;
private boolean isTable;
private String headline;
private List<SectionArea> sectionAreas = new ArrayList<>();
}
@@ -0,0 +1,17 @@
package com.iqser.red.service.redaction.v1.model;
import java.util.ArrayList;
import java.util.List;
import lombok.AllArgsConstructor;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@NoArgsConstructor
@AllArgsConstructor
public class Text {
private List<SectionText> sectionTexts = new ArrayList<>();
}
@@ -4,8 +4,11 @@ import com.iqser.red.service.redaction.v1.model.AnalyzeRequest;
import com.iqser.red.service.redaction.v1.model.AnalyzeResult;
import com.iqser.red.service.redaction.v1.model.AnnotateRequest;
import com.iqser.red.service.redaction.v1.model.AnnotateResponse;
import com.iqser.red.service.redaction.v1.model.ReanalyzeResult;
import com.iqser.red.service.redaction.v1.model.RedactionRequest;
import com.iqser.red.service.redaction.v1.model.RedactionResult;
import com.iqser.red.service.redaction.v1.model.RenalyzeRequest;
import org.springframework.http.MediaType;
import org.springframework.web.bind.annotation.PathVariable;
import org.springframework.web.bind.annotation.PostMapping;
@@ -21,6 +24,9 @@ public interface RedactionResource {
@PostMapping(value = "/analyze", produces = MediaType.APPLICATION_JSON_VALUE, consumes = MediaType.APPLICATION_JSON_VALUE)
AnalyzeResult analyze(@RequestBody AnalyzeRequest analyzeRequest);
@PostMapping(value = "/reanalyze", produces = MediaType.APPLICATION_JSON_VALUE, consumes = MediaType.APPLICATION_JSON_VALUE)
ReanalyzeResult reanalyze(@RequestBody RenalyzeRequest renalyzeRequest);
@PostMapping(value = "/annotate", produces = MediaType.APPLICATION_JSON_VALUE, consumes = MediaType.APPLICATION_JSON_VALUE)
AnnotateResponse annotate(@RequestBody AnnotateRequest annotateRequest);
@@ -20,7 +20,7 @@
<dependency>
<groupId>com.iqser.red.service</groupId>
<artifactId>configuration-service-api-v1</artifactId>
<version>2.0.0</version>
<version>2.2.9</version>
</dependency>
<dependency>
<groupId>org.drools</groupId>
@@ -73,11 +73,7 @@
<groupId>org.springframework.cloud</groupId>
<artifactId>spring-cloud-starter-openfeign</artifactId>
</dependency>
<!-- ribbon must be included because transitive a dependency on it.-->
<dependency>
<groupId>org.springframework.cloud</groupId>
<artifactId>spring-cloud-starter-netflix-ribbon</artifactId>
</dependency>
<!-- test dependencies -->
<dependency>
<groupId>org.springframework.boot</groupId>
@@ -1,10 +1,6 @@
package com.iqser.red.service.redaction.v1.server;
import com.iqser.red.commons.spring.DefaultWebMvcConfiguration;
import com.iqser.red.service.redaction.v1.server.client.RulesClient;
import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
import org.springframework.boot.SpringApplication;
import org.springframework.boot.actuate.autoconfigure.metrics.web.servlet.WebMvcMetricsAutoConfiguration;
import org.springframework.boot.actuate.autoconfigure.security.servlet.ManagementWebSecurityAutoConfiguration;
import org.springframework.boot.autoconfigure.SpringBootApplication;
import org.springframework.boot.autoconfigure.security.servlet.SecurityAutoConfiguration;
@@ -12,10 +8,14 @@ import org.springframework.boot.context.properties.EnableConfigurationProperties
import org.springframework.cloud.openfeign.EnableFeignClients;
import org.springframework.context.annotation.Import;
import com.iqser.red.commons.spring.DefaultWebMvcConfiguration;
import com.iqser.red.service.redaction.v1.server.client.RulesClient;
import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
@Import({DefaultWebMvcConfiguration.class})
@EnableFeignClients(basePackageClasses = RulesClient.class)
@EnableConfigurationProperties(RedactionServiceSettings.class)
@SpringBootApplication(exclude = {SecurityAutoConfiguration.class, ManagementWebSecurityAutoConfiguration.class, WebMvcMetricsAutoConfiguration.class})
@SpringBootApplication(exclude = {SecurityAutoConfiguration.class, ManagementWebSecurityAutoConfiguration.class})
public class Application {
public static void main(String[] args) {
@@ -8,6 +8,7 @@ import java.util.Map;
import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
import com.iqser.red.service.redaction.v1.model.SectionGrid;
import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
import com.iqser.red.service.redaction.v1.model.SectionText;
import lombok.Data;
import lombok.NoArgsConstructor;
@@ -18,6 +19,9 @@ public class Document {
private List<Page> pages = new ArrayList<>();
private List<Paragraph> paragraphs = new ArrayList<>();
private List<Header> headers = new ArrayList<>();
private List<Footer> footers = new ArrayList<>();
private List<UnclassifiedText> unclassifiedTexts = new ArrayList<>();
private Map<Integer, List<Entity>> entities = new HashMap<>();
private FloatFrequencyCounter textHeightCounter = new FloatFrequencyCounter();
private FloatFrequencyCounter fontSizeCounter= new FloatFrequencyCounter();
@@ -29,4 +33,6 @@ public class Document {
private SectionGrid sectionGrid = new SectionGrid();
private long dictionaryVersion;
private long rulesVersion;
private List<SectionText> sectionText = new ArrayList<>();
}
@@ -0,0 +1,24 @@
package com.iqser.red.service.redaction.v1.server.classification.model;
import java.util.List;
import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
import lombok.AllArgsConstructor;
import lombok.Data;
@Data
@AllArgsConstructor
public class Footer {
private List<TextBlock> textBlocks;
public SearchableText getSearchableText() {
SearchableText searchableText = new SearchableText();
textBlocks.forEach(block -> searchableText.addAll(block.getSequences()));
return searchableText;
}
}
@@ -0,0 +1,24 @@
package com.iqser.red.service.redaction.v1.server.classification.model;
import java.util.List;
import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
import lombok.AllArgsConstructor;
import lombok.Data;
@Data
@AllArgsConstructor
public class Header {
private List<TextBlock> textBlocks;
public SearchableText getSearchableText() {
SearchableText searchableText = new SearchableText();
textBlocks.forEach(block -> searchableText.addAll(block.getSequences()));
return searchableText;
}
}
@@ -1,8 +1,8 @@
package com.iqser.red.service.redaction.v1.server.classification.model;
import java.awt.geom.Rectangle2D;
import java.util.List;
import com.iqser.red.service.redaction.v1.server.redaction.model.PdfImage;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Rectangle;
@@ -17,7 +17,7 @@ public class Page {
@NonNull
private List<AbstractTextContainer> textBlocks;
private List<Rectangle2D> imageBounds;
private List<PdfImage> images;
private Rectangle bodyTextFrame;
@@ -31,7 +31,9 @@ public class Page {
private StringFrequencyCounter fontCounter = new StringFrequencyCounter();
private StringFrequencyCounter fontStyleCounter = new StringFrequencyCounter();
public boolean isRotated() {
return rotation != 0;
}
@@ -0,0 +1,24 @@
package com.iqser.red.service.redaction.v1.server.classification.model;
import java.util.List;
import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
import lombok.AllArgsConstructor;
import lombok.Data;
@Data
@AllArgsConstructor
public class UnclassifiedText {
private List<TextBlock> textBlocks;
public SearchableText getSearchableText() {
SearchableText searchableText = new SearchableText();
textBlocks.forEach(block -> searchableText.addAll(block.getSequences()));
return searchableText;
}
}
@@ -111,6 +111,8 @@ public class ClassificationService {
textBlock.setClassification("TextBlock Italic");
} else if (PositionUtils.isWithinBodyTextFrame(bodyTextFrame, textBlock)) {
textBlock.setClassification("TextBlock Unknown");
} else {
textBlock.setClassification("Other");
}
}
@@ -0,0 +1,15 @@
package com.iqser.red.service.redaction.v1.server.client;
import org.springframework.cloud.openfeign.FeignClient;
import org.springframework.http.MediaType;
import org.springframework.web.bind.annotation.PostMapping;
import org.springframework.web.bind.annotation.RequestBody;
import org.springframework.web.multipart.MultipartFile;
@FeignClient(name = "ImageClassificationResource", url = "${image-service.url}")
public interface ImageClassificationClient {
@PostMapping(value = "/process_full_img", consumes = MediaType.MULTIPART_FORM_DATA_VALUE, produces = MediaType.APPLICATION_JSON_VALUE)
ImageClassificationResponse classify(@RequestBody MultipartFile file);
}
@@ -0,0 +1,13 @@
package com.iqser.red.service.redaction.v1.server.client;
import lombok.AllArgsConstructor;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@NoArgsConstructor
@AllArgsConstructor
public class ImageClassificationResponse {
private String category;
}
@@ -0,0 +1,102 @@
package com.iqser.red.service.redaction.v1.server.client;
import java.io.ByteArrayInputStream;
import java.io.File;
import java.io.IOException;
import java.io.InputStream;
import org.springframework.lang.NonNull;
import org.springframework.lang.Nullable;
import org.springframework.util.Assert;
import org.springframework.util.FileCopyUtils;
import org.springframework.web.multipart.MultipartFile;
public class MockMultipartFile implements MultipartFile {
private final String name;
private final String originalFilename;
@Nullable
private final String contentType;
private final byte[] content;
public MockMultipartFile(String name, @Nullable byte[] content) {
this(name, "", (String) null, (byte[]) content);
}
public MockMultipartFile(String name, InputStream contentStream) throws IOException {
this(name, "", (String) null, (byte[]) FileCopyUtils.copyToByteArray(contentStream));
}
public MockMultipartFile(String name, @Nullable String originalFilename, @Nullable String contentType,
@Nullable byte[] content) {
Assert.hasLength(name, "Name must not be empty");
this.name = name;
this.originalFilename = originalFilename != null ? originalFilename : "";
this.contentType = contentType;
this.content = content != null ? content : new byte[0];
}
public MockMultipartFile(String name, @Nullable String originalFilename, @Nullable String contentType,
InputStream contentStream) throws IOException {
this(name, originalFilename, contentType, FileCopyUtils.copyToByteArray(contentStream));
}
public String getName() {
return this.name;
}
@NonNull
public String getOriginalFilename() {
return this.originalFilename;
}
@Nullable
public String getContentType() {
return this.contentType;
}
public boolean isEmpty() {
return this.content.length == 0;
}
public long getSize() {
return (long) this.content.length;
}
public byte[] getBytes() throws IOException {
return this.content;
}
public InputStream getInputStream() throws IOException {
return new ByteArrayInputStream(this.content);
}
public void transferTo(File dest) throws IOException, IllegalStateException {
FileCopyUtils.copy(this.content, dest);
}
}
@@ -4,11 +4,14 @@ import com.iqser.red.service.redaction.v1.model.AnalyzeRequest;
import com.iqser.red.service.redaction.v1.model.AnalyzeResult;
import com.iqser.red.service.redaction.v1.model.AnnotateRequest;
import com.iqser.red.service.redaction.v1.model.AnnotateResponse;
import com.iqser.red.service.redaction.v1.model.ReanalyzeResult;
import com.iqser.red.service.redaction.v1.model.RedactionLog;
import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
import com.iqser.red.service.redaction.v1.model.RedactionRequest;
import com.iqser.red.service.redaction.v1.model.RedactionResult;
import com.iqser.red.service.redaction.v1.model.RenalyzeRequest;
import com.iqser.red.service.redaction.v1.model.SectionGrid;
import com.iqser.red.service.redaction.v1.model.Text;
import com.iqser.red.service.redaction.v1.resources.RedactionResource;
import com.iqser.red.service.redaction.v1.server.classification.model.Document;
import com.iqser.red.service.redaction.v1.server.classification.model.Page;
@@ -17,13 +20,17 @@ import com.iqser.red.service.redaction.v1.server.redaction.service.AnnotationSer
import com.iqser.red.service.redaction.v1.server.redaction.service.DictionaryService;
import com.iqser.red.service.redaction.v1.server.redaction.service.DroolsExecutionService;
import com.iqser.red.service.redaction.v1.server.redaction.service.EntityRedactionService;
import com.iqser.red.service.redaction.v1.server.redaction.service.ImageClassificationService;
import com.iqser.red.service.redaction.v1.server.redaction.service.ReanalyzeService;
import com.iqser.red.service.redaction.v1.server.redaction.service.RedactionLogCreatorService;
import com.iqser.red.service.redaction.v1.server.segmentation.PdfSegmentationService;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
import com.iqser.red.service.redaction.v1.server.visualization.service.PdfVisualisationService;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
import org.apache.pdfbox.pdmodel.PDDocument;
import org.springframework.web.bind.annotation.PathVariable;
import org.springframework.web.bind.annotation.RequestBody;
@@ -46,6 +53,8 @@ public class RedactionController implements RedactionResource {
private final DroolsExecutionService droolsExecutionService;
private final DictionaryService dictionaryService;
private final AnnotationService annotationService;
private final ReanalyzeService reanalyzeService;
private final ImageClassificationService imageClassificationService;
@Override
@@ -59,6 +68,7 @@ public class RedactionController implements RedactionResource {
log.info("Document structure analysis successful, starting redaction analysis...");
entityRedactionService.processDocument(classifiedDoc, analyzeRequest.getRuleSetId(), analyzeRequest.getManualRedactions());
imageClassificationService.classifyImages(classifiedDoc);
redactionLogCreatorService.createRedactionLog(classifiedDoc, pdDocument.getNumberOfPages(), analyzeRequest.getManualRedactions(), analyzeRequest
.getRuleSetId());
@@ -67,8 +77,9 @@ public class RedactionController implements RedactionResource {
return AnalyzeResult.builder()
.sectionGrid(classifiedDoc.getSectionGrid())
.redactionLog(new RedactionLog(classifiedDoc.getRedactionLogEntities(), classifiedDoc.getDictionaryVersion(), classifiedDoc
.getRulesVersion(), analyzeRequest.getRuleSetId()))
.getRulesVersion(), analyzeRequest.getRuleSetId()))
.numberOfPages(classifiedDoc.getPages().size())
.text(new Text(classifiedDoc.getSectionText()))
.build();
} catch (Exception e) {
@@ -78,6 +89,12 @@ public class RedactionController implements RedactionResource {
}
public ReanalyzeResult reanalyze(@RequestBody RenalyzeRequest renalyzeRequest) {
return reanalyzeService.reanalyze(renalyzeRequest);
}
public AnnotateResponse annotate(@RequestBody AnnotateRequest annotateRequest) {
try (PDDocument pdDocument = PDDocument.load(new ByteArrayInputStream(annotateRequest.getDocument()))) {
@@ -0,0 +1,83 @@
package com.iqser.red.service.redaction.v1.server.parsing;
import java.io.IOException;
import java.util.ArrayList;
import java.util.List;
import org.apache.pdfbox.text.PDFTextStripperByArea;
import org.apache.pdfbox.text.TextPosition;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import lombok.Getter;
import lombok.Setter;
public class PDFAreaTextStripper extends PDFTextStripperByArea {
@Getter
private List<TextPositionSequence> textPositionSequences = new ArrayList<>();
@Setter
private int pageNumber;
public PDFAreaTextStripper() throws IOException {
}
@Override
public void writeString(String text, List<TextPosition> textPositions) throws IOException {
int startIndex = 0;
for (int i = 0; i <= textPositions.size() - 1; i++) {
if (i == 0 && (textPositions.get(i).getUnicode().equals(" ") || textPositions.get(i)
.getUnicode()
.equals("\u00A0"))) {
startIndex++;
continue;
}
// Strange but sometimes this is happening, for example: Metolachlor2.pdf
if (i > 0 && textPositions.get(i).getX() < textPositions.get(i - 1).getX()) {
List<TextPosition> sublist = textPositions.subList(startIndex, i);
if (!(sublist.isEmpty() || sublist.size() == 1 && (sublist.get(0)
.getUnicode()
.equals(" ") || sublist.get(0).getUnicode().equals("\u00A0")))) {
textPositionSequences.add(new TextPositionSequence(sublist, pageNumber));
}
startIndex = i;
}
if (i > 0 && (textPositions.get(i).getUnicode().equals(" ") || textPositions.get(i)
.getUnicode()
.equals("\u00A0")) && i <= textPositions.size() - 2) {
List<TextPosition> sublist = textPositions.subList(startIndex, i);
if (!(sublist.isEmpty() || sublist.size() == 1 && (sublist.get(0)
.getUnicode()
.equals(" ") || sublist.get(0).getUnicode().equals("\u00A0")))) {
textPositionSequences.add(new TextPositionSequence(sublist, pageNumber));
}
startIndex = i + 1;
}
}
List<TextPosition> sublist = textPositions.subList(startIndex, textPositions.size());
if (!sublist.isEmpty() && (sublist.get(sublist.size() - 1)
.getUnicode()
.equals(" ") || sublist.get(sublist.size() - 1).getUnicode().equals("\u00A0"))) {
sublist = sublist.subList(0, sublist.size() - 1);
}
if (!(sublist.isEmpty() || sublist.size() == 1 && (sublist.get(0).getUnicode().equals(" ") || sublist.get(0)
.getUnicode()
.equals("\u00A0")))) {
textPositionSequences.add(new TextPositionSequence(sublist, pageNumber));
}
super.writeString(text);
}
public void clearPositions(){
textPositionSequences = new ArrayList<>();
}
}
@@ -41,6 +41,7 @@ import org.apache.pdfbox.text.TextPosition;
import org.apache.pdfbox.util.Matrix;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.model.PdfImage;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Ruling;
import lombok.Getter;
@@ -54,7 +55,16 @@ public class PDFLinesTextStripper extends PDFTextStripper {
protected PDPage pdpage;
@Getter
private int minCharWidths;
private int minCharWidth;
@Getter
private int maxCharWidth;
@Getter
private int minCharHeight;
@Getter
private int maxCharHeight;
@Getter
private final List<TextPositionSequence> textPositionSequences = new ArrayList<>();
@@ -65,7 +75,7 @@ public class PDFLinesTextStripper extends PDFTextStripper {
private final List<Ruling> graphicsPath = new ArrayList<>();
@Getter
private List<Rectangle2D> imageBounds = new ArrayList<>();
private List<PdfImage> images = new ArrayList<>();
private float path_x;
private float path_y;
@@ -213,7 +223,7 @@ public class PDFLinesTextStripper extends PDFTextStripper {
.getWidth(), (float) imageBounds.getHeight());
if (rect.getHeight() > 2 && rect.getWidth() > 2) {
this.imageBounds.add(rect);
this.images.add(new PdfImage(pdfImage.getImage(), rect));
}
}
} catch (Exception e) {
@@ -280,8 +290,19 @@ public class PDFLinesTextStripper extends PDFTextStripper {
for (int i = 0; i <= textPositions.size() - 1; i++) {
int charWidth = (int) textPositions.get(i).getWidthDirAdj();
if (charWidth < minCharWidths) {
minCharWidths = charWidth;
if (charWidth < minCharWidth) {
minCharWidth = charWidth;
}
if (charWidth > maxCharWidth) {
maxCharWidth = charWidth;
}
int charHeight = (int) textPositions.get(i).getHeightDir();
if (charHeight < minCharHeight) {
minCharHeight = charHeight;
}
if (charWidth > maxCharHeight) {
maxCharHeight = charHeight;
}
if (i == 0 && (textPositions.get(i).getUnicode().equals(" ") || textPositions.get(i)
@@ -333,9 +354,12 @@ public class PDFLinesTextStripper extends PDFTextStripper {
@Override
public String getText(PDDocument doc) throws IOException {
minCharWidths = Integer.MAX_VALUE;
minCharWidth = Integer.MAX_VALUE;
maxCharWidth = 0;
minCharHeight = Integer.MAX_VALUE;
maxCharHeight = 0;
textPositionSequences.clear();
imageBounds = new ArrayList<>();
images = new ArrayList<>();
rulings.clear();
graphicsPath.clear();
path_x = 0.0f;
@@ -1,23 +0,0 @@
package com.iqser.red.service.redaction.v1.server.parsing.model;
import java.awt.geom.Rectangle2D;
import java.util.List;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Ruling;
import lombok.Builder;
import lombok.Data;
@Data
@Builder
public class ParsedElements {
private List<TextPositionSequence> sequences;
private List<Ruling> rulings;
private List<Rectangle2D> imageBounds;
private boolean landscape;
private boolean rotated;
private float minCharWidth;
}
@@ -101,10 +101,13 @@ public class TextPositionSequence implements CharSequence {
}
}
public float getRotationAdjustedY() {
return textPositions.get(0).getY();
}
public float getY1() {
if (textPositions.get(0).getRotation() == 90) {
@@ -202,6 +205,13 @@ public class TextPositionSequence implements CharSequence {
posXEnd = textPositions.get(0).getYDirAdj() + 2;
posYInit = getY1();
posYEnd = textPositions.get(textPositions.size() - 1).getXDirAdj() - height + 4;
} else if (textPositions.get(0).getRotation() == 270) {
posYInit = textPositions.get(0).getPageHeight() - getX1();
posYEnd = textPositions.get(0).getPageHeight() - getX2() - textPositions.get(0)
.getWidth() - textPositions.get(textPositions.size() - 1).getWidth() - 1;
posXInit = textPositions.get(0).getPageWidth() - textPositions.get(0).getYDirAdj() - 2;
posXEnd = textPositions.get(0).getPageWidth() - textPositions.get(textPositions.size() - 1)
.getYDirAdj() + height;
} else {
posXEnd = textPositions.get(textPositions.size() - 1)
.getXDirAdj() + textPositions.get(textPositions.size() - 1).getWidth() + 1;
@@ -213,5 +223,4 @@ public class TextPositionSequence implements CharSequence {
return new Rectangle(new Point(posXInit, posYInit), posXEnd - posXInit, posYEnd - posYInit + height, page);
}
}
@@ -0,0 +1,15 @@
package com.iqser.red.service.redaction.v1.server.redaction.model;
import java.util.Set;
import lombok.AllArgsConstructor;
import lombok.Data;
@Data
@AllArgsConstructor
public class DictionaryIncrement {
private Set<DictionaryIncrementValue> values;
private long dictionaryVersion;
}
@@ -0,0 +1,13 @@
package com.iqser.red.service.redaction.v1.server.redaction.model;
import lombok.AllArgsConstructor;
import lombok.Data;
@Data
@AllArgsConstructor
public class DictionaryIncrementValue {
private String value;
private boolean caseinsensitive;
}
@@ -3,6 +3,9 @@ package com.iqser.red.service.redaction.v1.server.redaction.model;
import java.io.Serializable;
import java.util.Set;
import java.util.stream.Collectors;
import com.iqser.red.service.configuration.v1.api.model.DictionaryEntry;
import lombok.AllArgsConstructor;
import lombok.Data;
@@ -17,11 +20,12 @@ public class DictionaryModel implements Serializable {
private boolean caseInsensitive;
private boolean hint;
private boolean recommendation;
private Set<String> entries;
private Set<DictionaryEntry> entries;
private Set<String> localEntries;
public Set<String> getValues(boolean local){
return local ? localEntries : entries;
return local ? localEntries : entries.stream().filter(e -> !e.isDeleted()).map(e-> e.getValue()).collect(Collectors
.toSet());
}
}
@@ -39,7 +39,7 @@ public class Entity {
private String textAfter;
public Entity(String word, String type, boolean redaction, String redactionReason, List<EntityPositionSequence> positionSequences, String headline, int matchedRule, int sectionNumber, String legalBasis, boolean isDictionaryEntry, String textBefore, String textAfter) {
public Entity(String word, String type, boolean redaction, String redactionReason, List<EntityPositionSequence> positionSequences, String headline, int matchedRule, int sectionNumber, String legalBasis, boolean isDictionaryEntry, String textBefore, String textAfter, Integer start, Integer end) {
this.word = word;
this.type = type;
@@ -53,6 +53,8 @@ public class Entity {
this.isDictionaryEntry = isDictionaryEntry;
this.textBefore = textBefore;
this.textAfter = textAfter;
this.start = start;
this.end = end;
}
@@ -0,0 +1,5 @@
package com.iqser.red.service.redaction.v1.server.redaction.model;
public enum ImageType {
LOGO, FORMULA, SIGNATURE, OTHER, OCR
}
@@ -0,0 +1,24 @@
package com.iqser.red.service.redaction.v1.server.redaction.model;
import java.awt.geom.Rectangle2D;
import java.awt.image.BufferedImage;
import lombok.AllArgsConstructor;
import lombok.Data;
import lombok.NoArgsConstructor;
import lombok.NonNull;
import lombok.RequiredArgsConstructor;
@Data
@NoArgsConstructor
@AllArgsConstructor
@RequiredArgsConstructor
public class PdfImage {
@NonNull
private BufferedImage image;
@NonNull
private Rectangle2D position;
private ImageType imageType;
}
@@ -0,0 +1,34 @@
package com.iqser.red.service.redaction.v1.server.redaction.model;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@NoArgsConstructor
public class ReanalysisSection {
private int sectionNumber;
private String headline;
private List<TextBlock> textBlocks;
private Map<String, CellValue> tabularData = new HashMap<>();
private List<Integer> cellStarts;
public SearchableText getSearchableText() {
SearchableText searchableText = new SearchableText();
textBlocks.forEach(block -> {
if (block instanceof TextBlock) {
searchableText.addAll(block.getSequences());
}
});
return searchableText;
}
}
@@ -32,6 +32,7 @@ public class SearchableText {
}
@SuppressWarnings("checkstyle:ModifiedControlVariable")
public List<EntityPositionSequence> getSequences(String searchString, boolean caseInsensitive,
List<TextPositionSequence> sequencesSubList) {
@@ -66,9 +67,12 @@ public class SearchableText {
for (int j = 0; j < searchSpace.get(i).length(); j++) {
if (i > 0 && j == 0 && searchSpace.get(i).charAt(0, caseInsensitive) == ' ' && searchSpace.get(i - 1)
.charAt(searchSpace.get(i - 1).length() - 1, caseInsensitive) == ' ' || j > 0 && searchSpace.get(i)
.charAt(j, caseInsensitive) == ' ' && searchSpace.get(i).charAt(j - 1, caseInsensitive) == ' ') {
if (j == searchSpace.get(i).length() - 1 && counter != 0 && !partMatch.getTextPositions().isEmpty()) {
.charAt(searchSpace.get(i - 1)
.length() - 1, caseInsensitive) == ' ' || j > 0 && searchSpace.get(i)
.charAt(j, caseInsensitive) == ' ' && searchSpace.get(i)
.charAt(j - 1, caseInsensitive) == ' ') {
if (j == searchSpace.get(i).length() - 1 && counter != 0 && !partMatch.getTextPositions()
.isEmpty()) {
crossSequenceParts.add(partMatch);
}
continue;
@@ -80,8 +84,8 @@ public class SearchableText {
counter++;
}
if (searchSpace.get(i)
.charAt(j, caseInsensitive) == searchChars[counter] || counter != 0 && searchSpace.get(i)
if (searchSpace.get(i).charAt(j, caseInsensitive) == searchChars[counter] || counter != 0 && searchSpace
.get(i)
.charAt(j, caseInsensitive) == '-') {
if (counter != 0 || i == 0 && j == 0 || j != 0 && isSeparator(searchSpace.get(i)
@@ -100,14 +104,15 @@ public class SearchableText {
if (counter == searchString.length()) {
crossSequenceParts.add(partMatch);
if (i == searchSpace.size() - 1 && j == searchSpace.get(i).length() - 1 || j != searchSpace.get(i)
.length() - 1 && isSeparator(searchSpace.get(i)
if (i == searchSpace.size() - 1 && j == searchSpace.get(i)
.length() - 1 || j != searchSpace.get(i).length() - 1 && isSeparator(searchSpace.get(i)
.charAt(j + 1, caseInsensitive)) || j == searchSpace.get(i)
.length() - 1 && isSeparator(searchSpace.get(i + 1)
.charAt(0, caseInsensitive)) || j == searchSpace.get(i).length() - 1 && searchSpace.get(i)
.charAt(0, caseInsensitive)) || j == searchSpace.get(i)
.length() - 1 && searchSpace.get(i)
.charAt(j, caseInsensitive) != ' ' && searchSpace.get(i + 1)
.charAt(0, caseInsensitive) != ' ') {
finalMatches.addAll(buildEntityPositionSequence(crossSequenceParts));
finalMatches.addAll(buildEntityPositionSequence(crossSequenceParts, normalizedSearchString));
}
counter = 0;
@@ -130,15 +135,21 @@ public class SearchableText {
}
return finalMatches;
}
private List<EntityPositionSequence> buildEntityPositionSequence(List<TextPositionSequence> crossSequenceParts) {
private List<EntityPositionSequence> buildEntityPositionSequence(List<TextPositionSequence> crossSequenceParts,
String searchString) {
List<EntityPositionSequence> result = new ArrayList<>();
String asString = buildString(crossSequenceParts);
if (!asString.equalsIgnoreCase(searchString)) {
return result;
}
String plainId = IdBuilder.buildId(crossSequenceParts);
String id = plainId;
List<EntityPositionSequence> result = new ArrayList<>();
int currentPage = -1;
int idDiffentPageSuffix = 1;
EntityPositionSequence entityPositionSequence = new EntityPositionSequence(id);
@@ -173,6 +184,12 @@ public class SearchableText {
@Override
public String toString() {
return buildString(sequences);
}
public String buildString(List<TextPositionSequence> sequences) {
StringBuilder sb = new StringBuilder();
TextPositionSequence previous = null;
@@ -140,6 +140,48 @@ public class Section {
}
public void expandToHintAnnotationByRegEx(String type, String pattern, boolean patternCaseInsensitive, int group, String asType) {
Pattern compiledPattern = Patterns.getCompiledPattern(pattern, patternCaseInsensitive);
Set<Entity> expanded = new HashSet<>();
for (Entity entity : entities) {
if (!entity.getType().equals(type) || entity.getTextAfter() == null) {
continue;
}
Matcher matcher = compiledPattern.matcher(entity.getTextAfter());
while (matcher.find()) {
String match = matcher.group(group);
if (StringUtils.isNotBlank(match)) {
expanded.addAll(findEntities(entity.getWord() + match, asType, false, false, 0, null, null));
}
}
}
EntitySearchUtils.addEntitiesWithHigherRank(entities, expanded, dictionary);
EntitySearchUtils.removeEntitiesContainedInLarger(entities);
}
public void addHintAnnotationByRegEx(String pattern, boolean patternCaseInsensitive, int group, String asType) {
Pattern compiledPattern = Patterns.getCompiledPattern(pattern, patternCaseInsensitive);
Matcher matcher = compiledPattern.matcher(searchText);
while (matcher.find()) {
String match = matcher.group(group);
if (StringUtils.isNotBlank(match)) {
Set<Entity> found = findEntities(match.trim(), asType, false, false, 0, null, null);
EntitySearchUtils.addEntitiesWithHigherRank(entities, found, dictionary);
}
}
}
public void redactIfPrecededBy(String prefix, String type, int ruleNumber, String reason, String legalBasis) {
entities.forEach(entity -> {
@@ -156,7 +198,14 @@ public class Section {
public void addHintAnnotation(String value, String asType) {
Set<Entity> found = findEntities(value.trim(), asType, true, false, 0, null, null);
EntitySearchUtils.addEntitiesWithHigherRank(entities, found, dictionary);
EntitySearchUtils.addEntitiesIgnoreRank(entities, found);
}
public void addRedaction(String value, String asType, int ruleNumber, String reason, String legalBasis) {
Set<Entity> found = findEntities(value.trim(), asType, true, true, ruleNumber, reason, legalBasis);
EntitySearchUtils.addEntitiesIgnoreRank(entities, found);
}
@@ -1,42 +1,46 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import com.iqser.red.service.configuration.v1.api.model.Colors;
import com.iqser.red.service.configuration.v1.api.model.TypeResponse;
import com.iqser.red.service.configuration.v1.api.model.TypeResult;
import com.iqser.red.service.redaction.v1.server.client.DictionaryClient;
import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryModel;
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryRepresentation;
import feign.FeignException;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.lang3.SerializationUtils;
import org.springframework.stereotype.Service;
import java.awt.Color;
import java.util.ArrayList;
import java.util.Comparator;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Locale;
import java.util.Map;
import java.util.Set;
import java.util.stream.Collectors;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.lang3.SerializationUtils;
import org.springframework.stereotype.Service;
import com.iqser.red.service.configuration.v1.api.model.Colors;
import com.iqser.red.service.configuration.v1.api.model.DictionaryEntry;
import com.iqser.red.service.configuration.v1.api.model.TypeResponse;
import com.iqser.red.service.configuration.v1.api.model.TypeResult;
import com.iqser.red.service.redaction.v1.server.client.DictionaryClient;
import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryIncrement;
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryIncrementValue;
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryModel;
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryRepresentation;
import feign.FeignException;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
@Slf4j
@Service
@RequiredArgsConstructor
public class DictionaryService {
private final DictionaryClient dictionaryClient;
private Map<String, DictionaryRepresentation> dictionariesByRuleSets = new HashMap<>();
public void updateDictionary(String ruleSetId) {
public long updateDictionary(String ruleSetId) {
long version = dictionaryClient.getVersion(ruleSetId);
@@ -45,6 +49,26 @@ public class DictionaryService {
if (foundDictionary == null || version > foundDictionary.getDictionaryVersion()) {
updateDictionaryEntry(ruleSetId, version);
}
return version;
}
public DictionaryIncrement getDictionaryIncrements(String ruleSetId, long fromVersion) {
long version = updateDictionary(ruleSetId);
Set<DictionaryIncrementValue> newValues = new HashSet<>();
List<DictionaryModel> dictionaryModels = dictionariesByRuleSets.get(ruleSetId).getDictionary();
dictionaryModels.forEach(dictionaryModel -> {
dictionaryModel.getEntries().forEach(dictionaryEntry -> {
if (dictionaryEntry.getVersion() > fromVersion) {
newValues.add(new DictionaryIncrementValue(dictionaryEntry.getValue(), dictionaryModel.isCaseInsensitive()));
}
});
});
return new DictionaryIncrement(newValues, version);
}
@@ -63,7 +87,6 @@ public class DictionaryService {
.sorted(Comparator.comparingInt(DictionaryModel::getRank).reversed())
.collect(Collectors.toList());
dictionary.forEach(dm -> dictionaryRepresentation.getLocalAccessMap().put(dm.getType(), dm));
Colors colors = dictionaryClient.getColors(ruleSetId);
@@ -86,6 +109,7 @@ public class DictionaryService {
public void updateExternalDictionary(Dictionary dictionary, String ruleSetId) {
dictionary.getDictionaryModels().forEach(dm -> {
if (dm.isRecommendation() && !dm.getLocalEntries().isEmpty()) {
dictionaryClient.addEntries(dm.getType(), ruleSetId, new ArrayList<>(dm.getLocalEntries()), false);
@@ -98,17 +122,15 @@ public class DictionaryService {
}
private Set<String> convertEntries(TypeResult t) {
private Set<DictionaryEntry> convertEntries(TypeResult t) {
Set<DictionaryEntry> entries = new HashSet<>(dictionaryClient.getDictionaryForType(t.getType(), t.getRuleSetId())
.getEntries());
if (t.isCaseInsensitive()) {
return dictionaryClient.getDictionaryForType(t.getType(), t.getRuleSetId())
.getEntries()
.stream()
.map(String::toLowerCase)
.collect(Collectors.toSet());
} else {
return new HashSet<>(dictionaryClient.getDictionaryForType(t.getType(), t.getRuleSetId()).getEntries());
entries.forEach(entry -> entry.setValue(entry.getValue().toLowerCase(Locale.ROOT)));
}
return entries;
}
@@ -148,6 +170,7 @@ public class DictionaryService {
return false;
}
public boolean isRecommendation(String type, String ruleSetId) {
DictionaryModel model = dictionariesByRuleSets.get(ruleSetId).getLocalAccessMap().get(type);
@@ -159,6 +182,7 @@ public class DictionaryService {
public Dictionary getDeepCopyDictionary(String ruleSetId) {
List<DictionaryModel> copy = new ArrayList<>();
var representation = dictionariesByRuleSets.get(ruleSetId);
@@ -170,15 +194,22 @@ public class DictionaryService {
return new Dictionary(copy, representation.getDictionaryVersion());
}
public float[] getRequestRemoveColor(String ruleSetId) {
return dictionariesByRuleSets.get(ruleSetId).getRequestAddColor();
}
public float[] getNotRedactedColor(String ruleSetId) {
return dictionariesByRuleSets.get(ruleSetId).getNotRedactedColor();
}
public float[] getRequestAddColor(String ruleSetId) {
return dictionariesByRuleSets.get(ruleSetId).getRequestAddColor();
}
}
@@ -17,10 +17,15 @@ import org.springframework.stereotype.Service;
import com.iqser.red.service.redaction.v1.model.ManualRedactionEntry;
import com.iqser.red.service.redaction.v1.model.ManualRedactions;
import com.iqser.red.service.redaction.v1.model.Point;
import com.iqser.red.service.redaction.v1.model.Rectangle;
import com.iqser.red.service.redaction.v1.server.classification.model.Document;
import com.iqser.red.service.redaction.v1.server.classification.model.Footer;
import com.iqser.red.service.redaction.v1.server.classification.model.Header;
import com.iqser.red.service.redaction.v1.server.classification.model.Paragraph;
import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
import com.iqser.red.service.redaction.v1.server.classification.model.UnclassifiedText;
import com.iqser.red.service.redaction.v1.model.SectionArea;
import com.iqser.red.service.redaction.v1.server.redaction.model.CellValue;
import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryModel;
@@ -29,6 +34,7 @@ import com.iqser.red.service.redaction.v1.server.redaction.model.EntityPositionS
import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
import com.iqser.red.service.redaction.v1.server.redaction.model.Section;
import com.iqser.red.service.redaction.v1.server.redaction.model.SectionSearchableTextPair;
import com.iqser.red.service.redaction.v1.model.SectionText;
import com.iqser.red.service.redaction.v1.server.redaction.utils.EntitySearchUtils;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Cell;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
@@ -60,7 +66,7 @@ public class EntityRedactionService {
Map<Integer, Set<Entity>> hintsPerSectionNumber = new HashMap<>();
documentEntities.stream().forEach(entity -> {
if (dictionary.isHint(entity.getType())) {
if (dictionary.isHint(entity.getType()) && entity.isDictionaryEntry()) {
hintsPerSectionNumber.computeIfAbsent(entity.getSectionNumber(), (x) -> new HashSet<>())
.add(entity);
}
@@ -83,7 +89,7 @@ public class EntityRedactionService {
.computeIfAbsent(entry.getKey(), (x) -> new ArrayList<>())
.add(new Entity(entity.getWord(), entity.getType(), entity.isRedaction(), entity.getRedactionReason(), entry
.getValue(), entity.getHeadline(), entity.getMatchedRule(), entity.getSectionNumber(), entity
.getLegalBasis(), entity.isDictionaryEntry(), entity.getTextBefore(), entity.getTextAfter()));
.getLegalBasis(), entity.isDictionaryEntry(), entity.getTextBefore(), entity.getTextAfter(), entity.getStart(), entity.getEnd()));
}
}
@@ -107,13 +113,29 @@ public class EntityRedactionService {
List<Table> tables = paragraph.getTables();
for (Table table : tables) {
if (table.getColCount() == 2) {
sectionSearchableTextPairs.addAll(processTableAsOneText(table, manualRedactions, sectionNumber, dictionary, local, hintsPerSectionNumber));
sectionSearchableTextPairs.addAll(processTableAsOneText(classifiedDoc, table, manualRedactions, sectionNumber, dictionary, local, hintsPerSectionNumber));
} else {
sectionSearchableTextPairs.addAll(processTablePerRow(table, manualRedactions, sectionNumber, dictionary, local, hintsPerSectionNumber));
sectionSearchableTextPairs.addAll(processTablePerRow(classifiedDoc, table, manualRedactions, sectionNumber, dictionary, local, hintsPerSectionNumber));
}
sectionNumber.incrementAndGet();
}
sectionSearchableTextPairs.add(processText(paragraph, manualRedactions, sectionNumber, dictionary, local, hintsPerSectionNumber));
sectionSearchableTextPairs.add(processText(classifiedDoc, paragraph.getSearchableText(), paragraph.getTextBlocks(), paragraph
.getHeadline(), manualRedactions, sectionNumber, dictionary, local, hintsPerSectionNumber));
sectionNumber.incrementAndGet();
}
for (Header header : classifiedDoc.getHeaders()) {
sectionSearchableTextPairs.add(processText(classifiedDoc, header.getSearchableText(), header.getTextBlocks(), "Header", manualRedactions, sectionNumber, dictionary, local, hintsPerSectionNumber));
sectionNumber.incrementAndGet();
}
for (Footer footer : classifiedDoc.getFooters()) {
sectionSearchableTextPairs.add(processText(classifiedDoc, footer.getSearchableText(), footer.getTextBlocks(), "Footer", manualRedactions, sectionNumber, dictionary, local, hintsPerSectionNumber));
sectionNumber.incrementAndGet();
}
for (UnclassifiedText unclassifiedText : classifiedDoc.getUnclassifiedTexts()) {
sectionSearchableTextPairs.add(processText(classifiedDoc, unclassifiedText.getSearchableText(), unclassifiedText.getTextBlocks(), "", manualRedactions, sectionNumber, dictionary, local, hintsPerSectionNumber));
sectionNumber.incrementAndGet();
}
@@ -150,31 +172,41 @@ public class EntityRedactionService {
}
private List<SectionSearchableTextPair> processTablePerRow(Table table, ManualRedactions manualRedactions,
private List<SectionSearchableTextPair> processTablePerRow(Document classifiedDoc, Table table, ManualRedactions manualRedactions,
AtomicInteger sectionNumber, Dictionary dictionary,
boolean local,
Map<Integer, Set<Entity>> hintsPerSectionNumber) {
List<SectionSearchableTextPair> sectionSearchableTextPairs = new ArrayList<>();
int rowNumber = 0;
for (List<Cell> row : table.getRows()) {
SearchableText searchableRow = new SearchableText();
Map<String, CellValue> tabularData = new HashMap<>();
int start = 0;
List<Integer> cellStarts = new ArrayList<>();
SectionText sectionText = new SectionText();
for (Cell cell : row) {
if (CollectionUtils.isEmpty(cell.getTextBlocks())) {
continue;
}
SectionArea sectionArea = new SectionArea(new Point((float) cell.getX(), (float) cell.getY()), (float) cell
.getWidth(), (float) cell.getHeight(), cell.getTextBlocks().get(0).getSequences().get(0).getPage());
sectionText.getSectionAreas().add(sectionArea);
addSectionToManualRedactions(cell.getTextBlocks(), manualRedactions, table.getHeadline(), sectionNumber.intValue());
int cellStart = start;
if(rowNumber != 0) {
if (!cell.isHeaderCell()) {
cell.getHeaderCells().forEach(headerCell -> {
StringBuilder headerBuilder = new StringBuilder();
headerCell.getTextBlocks().forEach(textBlock -> headerBuilder.append(textBlock.getText()));
String headerName = headerBuilder.toString().replaceAll("\n", "").replaceAll(" ", "").replaceAll("-", "");
String headerName = headerBuilder.toString()
.replaceAll("\n", "")
.replaceAll(" ", "")
.replaceAll("-", "");
sectionArea.setHeader(headerName);
tabularData.put(headerName, new CellValue(cell.getTextBlocks(), cellStart));
});
}
@@ -185,6 +217,7 @@ public class EntityRedactionService {
}
cellStarts.add(cellStart);
start = start + cell.toString().trim().length() + 1;
}
Set<Entity> rowEntities = findEntities(searchableRow, table.getHeadline(), sectionNumber.intValue(), dictionary, local);
surroundingWordsService.addSurroundingText(rowEntities, searchableRow, dictionary, cellStarts);
@@ -204,25 +237,41 @@ public class EntityRedactionService {
.dictionary(dictionary)
.build(), searchableRow));
if(!local) {
sectionText.setText(searchableRow.toString());
sectionText.setHeadline(table.getHeadline());
sectionText.setSectionNumber(sectionNumber.intValue());
sectionText.setTable(true);
classifiedDoc.getSectionText().add(sectionText);
}
sectionNumber.incrementAndGet();
rowNumber++;
}
return sectionSearchableTextPairs;
}
private List<SectionSearchableTextPair> processTableAsOneText(Table table, ManualRedactions manualRedactions,
private List<SectionSearchableTextPair> processTableAsOneText(Document classifiedDoc, Table table, ManualRedactions manualRedactions,
AtomicInteger sectionNumber, Dictionary dictionary,
boolean local,
Map<Integer, Set<Entity>> hintsPerSectionNumber) {
List<SectionSearchableTextPair> sectionSearchableTextPairs = new ArrayList<>();
SearchableText entireTableText = new SearchableText();
SectionText sectionText = new SectionText();
for (List<Cell> row : table.getRows()) {
for (Cell cell : row) {
if (CollectionUtils.isEmpty(cell.getTextBlocks())) {
continue;
}
if(!local) {
SectionArea sectionArea = new SectionArea(new Point((float) cell.getX(), (float) cell.getY()), (float) cell
.getWidth(), (float) cell.getHeight(), cell.getTextBlocks().get(0).getSequences().get(0).getPage());
sectionText.getSectionAreas().add(sectionArea);
}
for (TextBlock textBlock : cell.getTextBlocks()) {
entireTableText.addAll(textBlock.getSequences());
}
@@ -230,6 +279,7 @@ public class EntityRedactionService {
}
}
Set<Entity> rowEntities = findEntities(entireTableText, table.getHeadline(), sectionNumber.intValue(), dictionary, local);
surroundingWordsService.addSurroundingText(rowEntities, entireTableText, dictionary);
@@ -247,18 +297,40 @@ public class EntityRedactionService {
.dictionary(dictionary)
.build(), entireTableText));
if(!local) {
sectionText.setText(entireTableText.toString());
sectionText.setHeadline(table.getHeadline());
sectionText.setSectionNumber(sectionNumber.intValue());
sectionText.setTable(true);
classifiedDoc.getSectionText().add(sectionText);
}
return sectionSearchableTextPairs;
}
private SectionSearchableTextPair processText(Paragraph paragraph, ManualRedactions manualRedactions,
private SectionSearchableTextPair processText(Document classifiedDoc, SearchableText searchableText, List<TextBlock> paragraphTextBlocks,
String headline, ManualRedactions manualRedactions,
AtomicInteger sectionNumber, Dictionary dictionary, boolean local,
Map<Integer, Set<Entity>> hintsPerSectionNumber) {
SearchableText searchableText = paragraph.getSearchableText();
addSectionToManualRedactions(paragraph.getTextBlocks(), manualRedactions, paragraph.getHeadline(), sectionNumber
.intValue());
Set<Entity> entities = findEntities(searchableText, paragraph.getHeadline(), sectionNumber.intValue(), dictionary, local);
if(!local) {
SectionText sectionText = new SectionText();
for (TextBlock paragraphTextBlock : paragraphTextBlocks) {
SectionArea sectionArea = new SectionArea(new Point(paragraphTextBlock.getMinX(), paragraphTextBlock.getMinY()), paragraphTextBlock
.getWidth(), paragraphTextBlock.getHeight(), paragraphTextBlock.getPage());
sectionText.getSectionAreas().add(sectionArea);
}
sectionText.setText(searchableText.toString());
sectionText.setHeadline(headline);
sectionText.setSectionNumber(sectionNumber.intValue());
sectionText.setTable(false);
classifiedDoc.getSectionText().add(sectionText);
}
addSectionToManualRedactions(paragraphTextBlocks, manualRedactions, headline, sectionNumber.intValue());
Set<Entity> entities = findEntities(searchableText, headline, sectionNumber.intValue(), dictionary, local);
surroundingWordsService.addSurroundingText(entities, searchableText, dictionary);
return new SectionSearchableTextPair(Section.builder()
@@ -269,7 +341,7 @@ public class EntityRedactionService {
.collect(Collectors.toSet()) : entities)
.text(searchableText.getAsStringWithLinebreaks())
.searchText(searchableText.toString())
.headline(paragraph.getHeadline())
.headline(headline)
.sectionNumber(sectionNumber.intValue())
.searchableText(searchableText)
.dictionary(dictionary)
@@ -277,7 +349,7 @@ public class EntityRedactionService {
}
private Set<Entity> findEntities(SearchableText searchableText, String headline, int sectionNumber,
public Set<Entity> findEntities(SearchableText searchableText, String headline, int sectionNumber,
Dictionary dictionary, boolean local) {
Set<Entity> found = new HashSet<>();
@@ -0,0 +1,61 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import java.io.ByteArrayOutputStream;
import javax.imageio.ImageIO;
import org.springframework.stereotype.Service;
import com.iqser.red.service.redaction.v1.server.classification.model.Document;
import com.iqser.red.service.redaction.v1.server.client.ImageClassificationClient;
import com.iqser.red.service.redaction.v1.server.client.ImageClassificationResponse;
import com.iqser.red.service.redaction.v1.server.client.MockMultipartFile;
import com.iqser.red.service.redaction.v1.server.redaction.model.ImageType;
import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
@Slf4j
@Service
@RequiredArgsConstructor
public class ImageClassificationService {
private final ImageClassificationClient imageClassificationClient;
private final RedactionServiceSettings settings;
public void classifyImages(Document classifiedDoc) {
long start = System.currentTimeMillis();
classifiedDoc.getPages().forEach(page -> {
page.getImages().forEach(image -> {
if (settings.isEnableImageClassification()) {
try (ByteArrayOutputStream baos = new ByteArrayOutputStream()) {
ImageIO.write(image.getImage(), "png", baos);
ImageClassificationResponse response = imageClassificationClient.classify(new MockMultipartFile("file", "Image.png", "image/png", baos
.toByteArray()));
image.setImageType(ImageType.valueOf(response.getCategory()));
} catch (Exception e) {
log.error("Could not classify image", e);
}
} else {
image.setImageType(ImageType.OTHER);
}
if (image.getImageType().equals(ImageType.OTHER)) {
page.getTextBlocks().forEach(textblock -> {
if (image.getPosition()
.contains(textblock.getMinX(), textblock.getMinY(), textblock.getWidth(), textblock.getHeight())) {
image.setImageType(ImageType.OCR);
}
});
}
});
});
log.info("Image classification took: " + (System.currentTimeMillis() - start));
}
}
@@ -0,0 +1,280 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import java.awt.geom.Rectangle2D;
import java.io.ByteArrayInputStream;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.HashSet;
import java.util.Iterator;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.stream.Collectors;
import java.util.stream.Stream;
import org.apache.pdfbox.pdmodel.PDDocument;
import org.apache.pdfbox.pdmodel.PDPage;
import org.apache.pdfbox.pdmodel.common.PDRectangle;
import org.kie.api.runtime.KieContainer;
import org.springframework.stereotype.Service;
import org.springframework.web.bind.annotation.RequestBody;
import com.iqser.red.service.redaction.v1.model.Comment;
import com.iqser.red.service.redaction.v1.model.IdRemoval;
import com.iqser.red.service.redaction.v1.model.ManualForceRedact;
import com.iqser.red.service.redaction.v1.model.ManualRedactionEntry;
import com.iqser.red.service.redaction.v1.model.ManualRedactions;
import com.iqser.red.service.redaction.v1.model.ReanalyzeResult;
import com.iqser.red.service.redaction.v1.model.Rectangle;
import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
import com.iqser.red.service.redaction.v1.model.RenalyzeRequest;
import com.iqser.red.service.redaction.v1.model.SectionArea;
import com.iqser.red.service.redaction.v1.model.SectionText;
import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
import com.iqser.red.service.redaction.v1.server.exception.RedactionException;
import com.iqser.red.service.redaction.v1.server.parsing.PDFAreaTextStripper;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.model.CellValue;
import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryIncrement;
import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
import com.iqser.red.service.redaction.v1.server.redaction.model.EntityPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.model.ReanalysisSection;
import com.iqser.red.service.redaction.v1.server.redaction.model.Section;
import com.iqser.red.service.redaction.v1.server.redaction.model.SectionSearchableTextPair;
import com.iqser.red.service.redaction.v1.server.redaction.utils.EntitySearchUtils;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Cell;
import lombok.RequiredArgsConstructor;
@Service
@RequiredArgsConstructor
public class ReanalyzeService {
private final DictionaryService dictionaryService;
private final DroolsExecutionService droolsExecutionService;
private final SurroundingWordsService surroundingWordsService;
private final EntityRedactionService entityRedactionService;
private final RedactionLogCreatorService redactionLogCreatorService;
public ReanalyzeResult reanalyze(@RequestBody RenalyzeRequest renalyzeRequest) {
DictionaryIncrement dictionaryIncrement = dictionaryService.getDictionaryIncrements(renalyzeRequest.getRuleSetId(), renalyzeRequest
.getRedactionLog()
.getDictionaryVersion());
Set<String> manualForceAndRemoveIds = getForceAndRemoveIds(renalyzeRequest.getManualRedactions());
Map<String, List<Comment>> comments = null;
Set<ManualRedactionEntry> manualAdds = null;
if (renalyzeRequest.getManualRedactions() != null) {
// TODO comments will be removed from redactionLog, so we ignore this first.
comments = renalyzeRequest.getManualRedactions().getComments();
manualAdds = renalyzeRequest.getManualRedactions().getEntriesToAdd();
}
Set<Integer> sectionsToReanaylse = new HashSet<>();
for (RedactionLogEntry entry : renalyzeRequest.getRedactionLog().getRedactionLogEntry()) {
if (entry.isManual() || manualForceAndRemoveIds.contains(entry.getId())) {
sectionsToReanaylse.add(entry.getSectionNumber());
}
}
for (SectionText sectionText : renalyzeRequest.getText().getSectionTexts()) {
if (EntitySearchUtils.sectionContainsAny(sectionText.getText(), dictionaryIncrement.getValues())) {
sectionsToReanaylse.add(sectionText.getSectionNumber());
}
if (manualAdds != null) {
for (SectionArea sectionArea : sectionText.getSectionAreas()) {
for (ManualRedactionEntry manualAdd : manualAdds) {
for (Rectangle manualPosition : manualAdd.getPositions()) {
if (sectionArea.contains(manualPosition)) {
manualAdd.setSection(sectionText.getHeadline());
manualAdd.setSectionNumber(sectionText.getSectionNumber());
}
}
}
}
}
}
if (sectionsToReanaylse.isEmpty() && (manualAdds == null || manualAdds.isEmpty())) {
renalyzeRequest.getRedactionLog().setDictionaryVersion(dictionaryIncrement.getDictionaryVersion());
return ReanalyzeResult.builder().redactionLog(renalyzeRequest.getRedactionLog()).build();
}
try (PDDocument pdDocument = PDDocument.load(new ByteArrayInputStream(renalyzeRequest.getDocument()))) {
List<ReanalysisSection> reanalysisSections = new ArrayList<>();
for (SectionText sectionText : renalyzeRequest.getText().getSectionTexts()) {
if (!sectionsToReanaylse.contains(sectionText.getSectionNumber())) {
continue;
}
ReanalysisSection reanalysisSection = new ReanalysisSection();
reanalysisSection.setHeadline(sectionText.getHeadline());
reanalysisSection.setSectionNumber(sectionText.getSectionNumber());
List<TextBlock> textBlocks = new ArrayList<>();
Map<Integer, List<SectionArea>> sectionAreasPerPage = new HashMap<>();
for (SectionArea sectionArea : sectionText.getSectionAreas()) {
sectionAreasPerPage.computeIfAbsent(sectionArea.getPage(), (x) -> new ArrayList<>())
.add(sectionArea);
}
Map<String, CellValue> tabularData = new HashMap<>();
List<Integer> cellStarts = new ArrayList<>();
for (Integer page : sectionAreasPerPage.keySet()) {
List<SectionArea> areasOnPage = sectionAreasPerPage.get(page);
PDPage pdPage = pdDocument.getPage(page - 1);
PDRectangle cropBox = pdPage.getCropBox();
PDFAreaTextStripper textStripper = new PDFAreaTextStripper();
textStripper.setPageNumber(page);
int cellStart = 0;
for (SectionArea sectionArea : areasOnPage) {
Rectangle2D rect = null;
if (pdPage.getRotation() == 90) {
rect = new Rectangle2D.Float(sectionArea.getTopLeft().getY(), sectionArea.getTopLeft()
.getX(), sectionArea.getHeight(), sectionArea.getWidth() + 0.001f);
} else {
rect = new Rectangle2D.Float(sectionArea.getTopLeft().getX(), -sectionArea.getTopLeft()
.getY() + cropBox.getUpperRightY() - sectionArea.getHeight(), sectionArea.getWidth(), sectionArea
.getHeight() + 0.001f);
}
textStripper.addRegion(String.valueOf(1), rect);
textStripper.extractRegions(pdPage);
textStripper.getTextForRegion(String.valueOf(1));
List<TextPositionSequence> positions = textStripper.getTextPositionSequences();
TextBlock textBlock = new TextBlock(sectionArea.getTopLeft().getX(), sectionArea.getTopLeft()
.getX() + sectionArea.getWidth(), sectionArea.getTopLeft()
.getY(), sectionArea.getTopLeft().getY() + sectionArea.getHeight(), positions, 0);
if (sectionText.isTable()) {
Cell cell = new Cell();
cell.addTextBlock(textBlock);
tabularData.put(sectionArea.getHeader(), new CellValue(cell.getTextBlocks(), cellStart));
cellStarts.add(cellStart);
cellStart = cellStart + cell.toString().trim().length() + 1;
}
textBlocks.add(textBlock);
textStripper.clearPositions();
}
}
reanalysisSection.setTextBlocks(textBlocks);
reanalysisSection.setTabularData(tabularData);
reanalysisSections.add(reanalysisSection);
if (sectionText.isTable()) {
reanalysisSection.setCellStarts(cellStarts);
}
}
//--
KieContainer kieContainer = droolsExecutionService.updateRules(renalyzeRequest.getRuleSetId());
Dictionary dictionary = dictionaryService.getDeepCopyDictionary(renalyzeRequest.getRuleSetId());
List<SectionSearchableTextPair> sectionSearchableTextPairs = new ArrayList<>();
for (ReanalysisSection reanalysisSection : reanalysisSections) {
Set<Entity> entities = entityRedactionService.findEntities(reanalysisSection.getSearchableText(), reanalysisSection
.getHeadline(), reanalysisSection.getSectionNumber(), dictionary, false);
if (reanalysisSection.getCellStarts() != null) {
surroundingWordsService.addSurroundingText(entities, reanalysisSection.getSearchableText(), dictionary, reanalysisSection
.getCellStarts());
} else {
surroundingWordsService.addSurroundingText(entities, reanalysisSection.getSearchableText(), dictionary);
}
sectionSearchableTextPairs.add(new SectionSearchableTextPair(Section.builder()
.isLocal(false)
.dictionaryTypes(dictionary.getTypes())
.entities(entities)
.text(reanalysisSection.getSearchableText().getAsStringWithLinebreaks())
.searchText(reanalysisSection.getSearchableText().toString())
.headline(reanalysisSection.getHeadline())
.sectionNumber(reanalysisSection.getSectionNumber())
.tabularData(reanalysisSection.getTabularData())
.searchableText(reanalysisSection.getSearchableText())
.dictionary(dictionary)
.build(), reanalysisSection.getSearchableText()));
}
Set<Entity> entities = new HashSet<>();
sectionSearchableTextPairs.forEach(sectionSearchableTextPair -> {
Section analysedRowSection = droolsExecutionService.executeRules(kieContainer, sectionSearchableTextPair
.getSection());
entities.addAll(analysedRowSection.getEntities());
});
Map<Integer, List<Entity>> entitiesPerPage = new HashMap<>();
for (Entity entity : entities) {
Map<Integer, List<EntityPositionSequence>> sequenceOnPage = new HashMap<>();
for (EntityPositionSequence entityPositionSequence : entity.getPositionSequences()) {
sequenceOnPage.computeIfAbsent(entityPositionSequence.getPageNumber(), (x) -> new ArrayList<>())
.add(entityPositionSequence);
}
for (Map.Entry<Integer, List<EntityPositionSequence>> entry : sequenceOnPage.entrySet()) {
entitiesPerPage.computeIfAbsent(entry.getKey(), (x) -> new ArrayList<>())
.add(new Entity(entity.getWord(), entity.getType(), entity.isRedaction(), entity.getRedactionReason(), entry
.getValue(), entity.getHeadline(), entity.getMatchedRule(), entity.getSectionNumber(), entity
.getLegalBasis(), entity.isDictionaryEntry(), entity.getTextBefore(), entity.getTextAfter(), entity
.getStart(), entity.getEnd()));
}
}
List<RedactionLogEntry> newRedactionLogEntries = new ArrayList<>();
for (int page = 1; page <= pdDocument.getNumberOfPages(); page++) {
if (entitiesPerPage.get(page) != null) {
newRedactionLogEntries.addAll(redactionLogCreatorService.addEntries(entitiesPerPage, renalyzeRequest
.getManualRedactions(), page, renalyzeRequest.getRuleSetId()));
}
newRedactionLogEntries.addAll(redactionLogCreatorService.addManualAddEntries(manualAdds, comments, page, renalyzeRequest
.getRuleSetId()));
}
Iterator<RedactionLogEntry> itty = renalyzeRequest.getRedactionLog().getRedactionLogEntry().iterator();
while (itty.hasNext()) {
RedactionLogEntry entry = itty.next();
if (sectionsToReanaylse.contains(entry.getSectionNumber()) && !entry.isImage() || entry.getSectionNumber() == 0 && !entry.isImage()) {
itty.remove();
}
}
renalyzeRequest.getRedactionLog().getRedactionLogEntry().addAll(newRedactionLogEntries);
renalyzeRequest.getRedactionLog().setDictionaryVersion(dictionaryIncrement.getDictionaryVersion());
return ReanalyzeResult.builder().redactionLog(renalyzeRequest.getRedactionLog()).build();
} catch (Exception e) {
throw new RedactionException(e);
}
}
private Set<String> getForceAndRemoveIds(ManualRedactions manualRedactions) {
if (manualRedactions == null) {
return new HashSet<>();
}
return Stream.concat(manualRedactions.getIdsToRemove()
.stream()
.map(IdRemoval::getId), manualRedactions.getForceRedacts().stream().map(ManualForceRedact::getId))
.collect(Collectors.toSet());
}
}
@@ -1,9 +1,10 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import java.awt.geom.Rectangle2D;
import java.util.ArrayList;
import java.util.HashSet;
import java.util.List;
import java.util.Locale;
import java.util.Map;
import java.util.Set;
import java.util.stream.Collectors;
@@ -14,6 +15,7 @@ import org.springframework.stereotype.Service;
import com.iqser.red.service.redaction.v1.model.CellRectangle;
import com.iqser.red.service.redaction.v1.model.Comment;
import com.iqser.red.service.redaction.v1.model.IdRemoval;
import com.iqser.red.service.redaction.v1.model.ManualForceRedact;
import com.iqser.red.service.redaction.v1.model.ManualRedactionEntry;
import com.iqser.red.service.redaction.v1.model.ManualRedactionType;
import com.iqser.red.service.redaction.v1.model.ManualRedactions;
@@ -28,6 +30,8 @@ import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
import com.iqser.red.service.redaction.v1.server.redaction.model.EntityPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.model.ImageType;
import com.iqser.red.service.redaction.v1.server.redaction.model.PdfImage;
import com.iqser.red.service.redaction.v1.server.redaction.utils.IdBuilder;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Cell;
@@ -39,8 +43,6 @@ import lombok.RequiredArgsConstructor;
@RequiredArgsConstructor
public class RedactionLogCreatorService {
private static final String IMAGE = "image";
private final DictionaryService dictionaryService;
@@ -54,14 +56,16 @@ public class RedactionLogCreatorService {
addSectionGrid(classifiedDoc, page);
if (classifiedDoc.getEntities().get(page) != null) {
addEntries(classifiedDoc, manualRedactions, page, ruleSetId);
classifiedDoc.getRedactionLogEntities()
.addAll(addEntries(classifiedDoc.getEntities(), manualRedactions, page, ruleSetId));
}
if (manualRedactionPages.contains(page)) {
addManualEntries(classifiedDoc, manualRedactions, page, ruleSetId);
classifiedDoc.getRedactionLogEntities()
.addAll(addManualAddEntries(manualRedactions.getEntriesToAdd(), manualRedactions.getComments(), page, ruleSetId));
}
if (!classifiedDoc.getPages().get(page - 1).getImageBounds().isEmpty()) {
if (!classifiedDoc.getPages().get(page - 1).getImages().isEmpty()) {
addImageEntries(classifiedDoc, page, ruleSetId);
}
}
@@ -70,24 +74,41 @@ public class RedactionLogCreatorService {
private void addImageEntries(Document classifiedDoc, int pageNumber, String ruleSetId) {
for (Rectangle2D imageBounds : classifiedDoc.getPages().get(pageNumber - 1).getImageBounds()) {
for (PdfImage image : classifiedDoc.getPages().get(pageNumber - 1).getImages()) {
RedactionLogEntry redactionLogEntry = RedactionLogEntry.builder()
.id(IdBuilder.buildId(imageBounds, pageNumber))
.color(getColor(IMAGE, ruleSetId))
.type(IMAGE)
.redacted(false)
.isHint(true)
.id(IdBuilder.buildId(image.getPosition(), pageNumber))
.color(getColor(image.getImageType().name().toLowerCase(Locale.ROOT), ruleSetId))
.isImage(true)
.type(image.getImageType().equals(ImageType.OTHER) ? "image" : image.getImageType().name().toLowerCase(Locale.ROOT))
.redacted(isImageRedactionType(image.getImageType()))
.isHint(!isImageRedactionType(image.getImageType()))
.manual(false)
.isDictionaryEntry(false)
.isRecommendation(false)
.positions(List.of(new Rectangle(new Point((float) imageBounds.getX(), (float) imageBounds.getY()), (float) imageBounds
.getWidth(), (float) imageBounds.getHeight(), pageNumber)))
.positions(List.of(new Rectangle(new Point((float) image.getPosition()
.getX(), (float) image.getPosition().getY()), (float) image.getPosition()
.getWidth(), (float) image.getPosition().getHeight(), pageNumber)))
.build();
classifiedDoc.getRedactionLogEntities().add(redactionLogEntry);
}
}
private boolean isImageRedactionType(ImageType imageType) {
if (imageType.equals(ImageType.LOGO)) {
return true;
}
if (imageType.equals(ImageType.FORMULA)) {
return true;
}
if (imageType.equals(ImageType.SIGNATURE)) {
return true;
}
return false;
}
private Set<Integer> getManualRedactionPages(ManualRedactions manualRedactions) {
Set<Integer> manualRedactionPages = new HashSet<>();
@@ -105,13 +126,16 @@ public class RedactionLogCreatorService {
}
private void addEntries(Document classifiedDoc, ManualRedactions manualRedactions, int page, String ruleSetId) {
public List<RedactionLogEntry> addEntries(Map<Integer, List<Entity>> entities, ManualRedactions manualRedactions,
int page, String ruleSetId) {
List<RedactionLogEntry> redactionLogEntities = new ArrayList<>();
// Duplicates can exist due table extraction colums over multiple rows.
Set<String> processedIds = new HashSet<>();
entityLoop:
for (Entity entity : classifiedDoc.getEntities().get(page)) {
for (Entity entity : entities.get(page)) {
List<Comment> comments = null;
@@ -136,9 +160,11 @@ public class RedactionLogCreatorService {
redactionLogEntry.setRedacted(false);
redactionLogEntry.setStatus(Status.APPROVED);
manualOverrideReason = entity.getRedactionReason() + ", removed by manual override";
redactionLogEntry.setColor(getColor(entity, ruleSetId, false));
} else if (manualRemoval.getStatus().equals(Status.REQUESTED)) {
manualOverrideReason = entity.getRedactionReason() + ", requested to remove";
redactionLogEntry.setStatus(Status.REQUESTED);
redactionLogEntry.setColor(getColor(entity, ruleSetId, true));
} else {
redactionLogEntry.setStatus(Status.DECLINED);
}
@@ -149,7 +175,34 @@ public class RedactionLogCreatorService {
redactionLogEntry.setManualRedactionType(ManualRedactionType.REMOVE);
}
}
}
if (manualRedactions != null && !manualRedactions.getForceRedacts().isEmpty()) {
for (ManualForceRedact manualForceRedact : manualRedactions.getForceRedacts()) {
if (manualForceRedact.getId().equals(entityPositionSequence.getId())) {
String manualOverrideReason = null;
if (manualForceRedact.getStatus().equals(Status.APPROVED)) {
entity.setRedaction(true);
redactionLogEntry.setRedacted(true);
redactionLogEntry.setStatus(Status.APPROVED);
redactionLogEntry.setColor(getColor(entity, ruleSetId, false));
manualOverrideReason = entity.getRedactionReason() + ", forced by manual override";
redactionLogEntry.setLegalBasis(manualForceRedact.getLegalBasis());
} else if (manualForceRedact.getStatus().equals(Status.REQUESTED)) {
manualOverrideReason = entity.getRedactionReason() + ", requested to force redact";
redactionLogEntry.setStatus(Status.REQUESTED);
redactionLogEntry.setColor(getColor(entity, ruleSetId, true));
redactionLogEntry.setLegalBasis(manualForceRedact.getLegalBasis());
} else {
redactionLogEntry.setStatus(Status.DECLINED);
}
entity.setRedactionReason(manualOverrideReason != null ? manualOverrideReason : entity.getRedactionReason());
redactionLogEntry.setReason(manualOverrideReason);
redactionLogEntry.setManual(true);
redactionLogEntry.setManualRedactionType(ManualRedactionType.FORCE_REDACT);
}
}
}
if (CollectionUtils.isNotEmpty(entityPositionSequence.getSequences())) {
@@ -171,10 +224,12 @@ public class RedactionLogCreatorService {
// FIXME ids should never be null. Figure out why this happens.
if (redactionLogEntry.getId() != null) {
classifiedDoc.getRedactionLogEntities().add(redactionLogEntry);
redactionLogEntities.add(redactionLogEntry);
}
}
}
return redactionLogEntities;
}
@@ -194,7 +249,7 @@ public class RedactionLogCreatorService {
startIndex = i;
}
}
if (startIndex != textPositions.size() - 1) {
if (startIndex != textPositions.size()) {
rectangles.add(new TextPositionSequence(textPositions.subList(startIndex, textPositions.size()), page).getRectangle());
}
}
@@ -203,14 +258,17 @@ public class RedactionLogCreatorService {
}
private void addManualEntries(Document classifiedDoc, ManualRedactions manualRedactions, int page,
String ruleSetId) {
public List<RedactionLogEntry> addManualAddEntries(Set<ManualRedactionEntry> manualAdds,
Map<String, List<Comment>> comments, int page,
String ruleSetId) {
if (manualRedactions == null) {
return;
List<RedactionLogEntry> redactionLogEntities = new ArrayList<>();
if (manualAdds == null) {
return redactionLogEntities;
}
for (ManualRedactionEntry manualRedactionEntry : manualRedactions.getEntriesToAdd()) {
for (ManualRedactionEntry manualRedactionEntry : manualAdds) {
String id = manualRedactionEntry.getId();
@@ -224,11 +282,13 @@ public class RedactionLogCreatorService {
}
}
redactionLogEntry.setComments(manualRedactions.getComments().get(id));
redactionLogEntry.setComments(comments.get(id));
if (!rectanglesOnPage.isEmpty() && !approvedAndShouldBeInDictionary(manualRedactionEntry)) {
classifiedDoc.getRedactionLogEntities().add(redactionLogEntry);
redactionLogEntities.add(redactionLogEntry);
}
}
return redactionLogEntities;
}
@@ -277,6 +337,8 @@ public class RedactionLogCreatorService {
.isDictionaryEntry(entity.isDictionaryEntry())
.textAfter(entity.getTextAfter())
.textBefore(entity.getTextBefore())
.startOffset(entity.getStart())
.endOffset(entity.getEnd())
.build();
}
@@ -5,12 +5,14 @@ import java.util.Comparator;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Locale;
import java.util.Map;
import java.util.Set;
import java.util.regex.Pattern;
import java.util.stream.Collectors;
import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryIncrementValue;
import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
import com.iqser.red.service.redaction.v1.server.redaction.model.EntityPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
@@ -20,8 +22,40 @@ import lombok.extern.slf4j.Slf4j;
@Slf4j
@UtilityClass
@SuppressWarnings("PMD")
public class EntitySearchUtils {
public boolean sectionContainsAny(String sectionText, Set<DictionaryIncrementValue> values) {
String inputString = sectionText.toLowerCase(Locale.ROOT);
for (DictionaryIncrementValue value : values) {
String cleanValue = value.getValue().toLowerCase(Locale.ROOT).trim();
if (cleanValue.length() <= 2) {
continue;
}
int startIndex;
int stopIndex = 0;
do {
startIndex = inputString.indexOf(cleanValue, stopIndex);
stopIndex = startIndex + cleanValue.length();
if (startIndex > -1 && (startIndex == 0 || Character.isWhitespace(inputString.charAt(startIndex - 1)) || isSeparator(inputString
.charAt(startIndex - 1))) && (stopIndex == inputString.length() || isSeparator(inputString.charAt(stopIndex)))) {
if(value.isCaseinsensitive() || !value.isCaseinsensitive() && sectionText.substring(startIndex, stopIndex).equals(value.getValue())){
return true;
}
}
} while (startIndex > -1);
}
return false;
}
public Set<Entity> find(String inputString, Set<String> values, String type, String headline, int sectionNumber,
boolean local) {
@@ -121,4 +155,10 @@ public class EntitySearchUtils {
}
entities.add(found);
}
public void addEntitiesIgnoreRank(Set<Entity> entities, Set<Entity> found){
// HashSet keeps old value but we want the new.
entities.removeAll(found);
entities.addAll(found);
}
}
@@ -15,7 +15,6 @@ import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
import com.iqser.red.service.redaction.v1.server.classification.service.BlockificationService;
import com.iqser.red.service.redaction.v1.server.classification.service.ClassificationService;
import com.iqser.red.service.redaction.v1.server.parsing.PDFLinesTextStripper;
import com.iqser.red.service.redaction.v1.server.parsing.model.ParsedElements;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.CleanRulings;
@@ -57,19 +56,10 @@ public class PdfSegmentationService {
int rotation = pdPage.getRotation();
boolean isRotated = rotation != 0 && rotation != 360;
ParsedElements parsedElements = ParsedElements.builder()
.rulings(stripper.getRulings())
.sequences(stripper.getTextPositionSequences())
.imageBounds(stripper.getImageBounds())
.minCharWidth(stripper.getMinCharWidths())
.landscape(isLandscape)
.rotated(isRotated)
.build();
CleanRulings cleanRulings = rulingCleaningService.getCleanRulings(stripper.getRulings(), stripper.getMinCharWidth(), stripper
.getMaxCharHeight());
CleanRulings cleanRulings = rulingCleaningService.getCleanRulings(parsedElements.getRulings(), parsedElements
.getMinCharWidth());
Page page = blockificationService.blockify(parsedElements.getSequences(), cleanRulings.getHorizontal(), cleanRulings
Page page = blockificationService.blockify(stripper.getTextPositionSequences(), cleanRulings.getHorizontal(), cleanRulings
.getVertical());
page.setRotation(rotation);
@@ -77,11 +67,11 @@ public class PdfSegmentationService {
buildPageStatistics(page);
page.setLandscape(parsedElements.isLandscape() || parsedElements.isRotated());
page.setLandscape(isLandscape || isRotated);
page.setPageNumber(pageNumber);
increaseDocumentStatistics(page, document);
page.setImageBounds(parsedElements.getImageBounds());
page.setImages(stripper.getImages());
pages.add(page);
}
@@ -10,9 +10,12 @@ import org.apache.commons.collections4.CollectionUtils;
import org.springframework.stereotype.Service;
import com.iqser.red.service.redaction.v1.server.classification.model.Document;
import com.iqser.red.service.redaction.v1.server.classification.model.Footer;
import com.iqser.red.service.redaction.v1.server.classification.model.Header;
import com.iqser.red.service.redaction.v1.server.classification.model.Page;
import com.iqser.red.service.redaction.v1.server.classification.model.Paragraph;
import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
import com.iqser.red.service.redaction.v1.server.classification.model.UnclassifiedText;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Cell;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
@@ -24,25 +27,46 @@ public class SectionsBuilderService {
List<AbstractTextContainer> chunkWords = new ArrayList<>();
List<Paragraph> chunkBlockList = new ArrayList<>();
List<Header> headers = new ArrayList<>();
List<Footer> footers = new ArrayList<>();
List<UnclassifiedText> unclassifiedTexts = new ArrayList<>();
AbstractTextContainer prev = null;
String lastHeadline = "";
Table previousTable = null;
for (Page page : document.getPages()) {
List<TextBlock> header = new ArrayList<>();
List<TextBlock> footer = new ArrayList<>();
List<TextBlock> unclassifiedText = new ArrayList<>();
for (AbstractTextContainer current : page.getTextBlocks()) {
if (current.getClassification() == null || current.getClassification()
.equals("Header") || current.getClassification().equals("Footer")) {
if (current.getClassification() == null) {
continue;
}
current.setPage(page.getPageNumber());
if (prev != null && current.getClassification().startsWith("H ") && !prev.getClassification().startsWith("H ") || !document.isHeadlines()) {
if (current.getClassification().equals("Header")) {
header.add((TextBlock) current);
continue;
}
if (current.getClassification().equals("Footer")) {
footer.add((TextBlock) current);
continue;
}
if (current.getClassification().equals("Other")) {
unclassifiedText.add((TextBlock) current);
continue;
}
if (prev != null && current.getClassification().startsWith("H ") && !prev.getClassification()
.startsWith("H ") || !document.isHeadlines()) {
Paragraph chunkBlock = buildTextBlock(chunkWords, lastHeadline);
chunkBlock.setHeadline(lastHeadline);
if(document.isHeadlines()) {
if (document.isHeadlines()) {
lastHeadline = current.getText();
}
chunkBlockList.add(chunkBlock);
@@ -60,6 +84,16 @@ public class SectionsBuilderService {
chunkWords.add(current);
prev = current;
}
if(!header.isEmpty()) {
headers.add(new Header(header));
}
if(!footer.isEmpty()) {
footers.add(new Footer(footer));
}
if(!unclassifiedText.isEmpty()) {
unclassifiedTexts.add(new UnclassifiedText(unclassifiedText));
}
}
Paragraph chunkBlock = buildTextBlock(chunkWords, lastHeadline);
@@ -67,6 +101,9 @@ public class SectionsBuilderService {
chunkBlockList.add(chunkBlock);
document.setParagraphs(chunkBlockList);
document.setHeaders(headers);
document.setFooters(footers);
document.setUnclassifiedTexts(unclassifiedTexts);
}
@@ -175,9 +212,9 @@ public class SectionsBuilderService {
private boolean hasInvalidHeaderInformation(Table table) {
return table.getRows().stream()
.flatMap(row -> row.stream()
.filter(cell -> CollectionUtils.isNotEmpty(cell.getHeaderCells())))
return table.getRows()
.stream()
.flatMap(row -> row.stream().filter(cell -> CollectionUtils.isNotEmpty(cell.getHeaderCells())))
.findAny()
.isEmpty();
@@ -188,6 +225,9 @@ public class SectionsBuilderService {
for (int i = table.getRowCount() - 1; i >= 0; i--) { // Non header rows are most likely at bottom of table
List<Cell> row = table.getRows().get(i);
if (row.size() == 1) {
continue;
}
boolean allNonHeader = true;
for (Cell cell : row) {
if (cell.isHeaderCell()) {
@@ -12,4 +12,6 @@ public class RedactionServiceSettings {
private int surroundingWordsOffsetWindow = 100;
private boolean enableImageClassification = true;
}
@@ -11,10 +11,12 @@ import com.iqser.red.service.redaction.v1.server.redaction.utils.TextNormalizati
import lombok.Data;
import lombok.EqualsAndHashCode;
import lombok.NoArgsConstructor;
@SuppressWarnings("serial")
@Data
@EqualsAndHashCode(callSuper = true)
@NoArgsConstructor
public class Cell extends Rectangle {
private List<TextBlock> textBlocks = new ArrayList<>();
@@ -110,6 +110,10 @@ public class Table extends AbstractTextContainer {
// we move from left to right and top to bottom
for (int rowIndex = 0; rowIndex < rows.size(); rowIndex++) {
List<Cell> rowCells = rows.get(rowIndex);
if(rowCells.size() == 1){
continue;
}
for (int colIndex = 0; colIndex < rowCells.size(); colIndex++) {
Cell cell = rowCells.get(colIndex);
List<Cell> cellsToTheLeft = rowCells.subList(0, colIndex);
@@ -18,9 +18,10 @@ import com.iqser.red.service.redaction.v1.server.tableextraction.utils.Utils;
@Service
public class RulingCleaningService {
public CleanRulings getCleanRulings(List<Ruling> rulings, float minCharWidth){
public CleanRulings getCleanRulings(List<Ruling> rulings, float minCharWidth, float maxCharHeight) {
if (!rulings.isEmpty()) {
snapPoints(rulings, minCharWidth , minCharWidth);
snapPoints(rulings, minCharWidth, maxCharHeight);
}
List<Ruling> vrs = new ArrayList<>();
@@ -39,13 +40,10 @@ public class RulingCleaningService {
}
List<Ruling> horizontalRulingLines = collapseOrientedRulings(hrs);
return CleanRulings
.builder()
.vertical(verticalRulingLines)
.horizontal(horizontalRulingLines)
.build();
return CleanRulings.builder().vertical(verticalRulingLines).horizontal(horizontalRulingLines).build();
}
public void snapPoints(List<? extends Line2D.Float> rulings, float xThreshold, float yThreshold) {
// collect points and keep a Line -> p1,p2 map
@@ -122,12 +120,14 @@ public class RulingCleaningService {
private List<Ruling> collapseOrientedRulings(List<Ruling> lines) {
int COLINEAR_OR_PARALLEL_PIXEL_EXPAND_AMOUNT = 1;
return collapseOrientedRulings(lines, COLINEAR_OR_PARALLEL_PIXEL_EXPAND_AMOUNT);
}
private List<Ruling> collapseOrientedRulings(List<Ruling> lines, int expandAmount) {
ArrayList<Ruling> rv = new ArrayList<>();
lines.sort((a, b) -> {
final float diff = a.getPosition() - b.getPosition();
@@ -141,25 +141,24 @@ public class RulingCleaningService {
final float lastStart = last.getStart();
final float lastEnd = last.getEnd();
final boolean lastFlipped = lastStart > lastEnd;
final boolean lastFlipped = lastStart > lastEnd;
final boolean nextFlipped = next_line.getStart() > next_line.getEnd();
boolean differentDirections = nextFlipped != lastFlipped;
float nextS = differentDirections ? next_line.getEnd() : next_line.getStart();
float nextS = differentDirections ? next_line.getEnd() : next_line.getStart();
float nextE = differentDirections ? next_line.getStart() : next_line.getEnd();
final float newStart = lastFlipped ? Math.max(nextS, lastStart) : Math.min(nextS, lastStart);
final float newEnd = lastFlipped ? Math.min(nextE, lastEnd) : Math.max(nextE, lastEnd);
final float newEnd = lastFlipped ? Math.min(nextE, lastEnd) : Math.max(nextE, lastEnd);
last.setStartEnd(newStart, newEnd);
assert !last.oblique();
}
else if (next_line.length() == 0) {
} else if (next_line.length() == 0) {
continue;
}
else {
} else {
rv.add(next_line);
}
}
return rv;
}
}
@@ -2,6 +2,7 @@ info:
description: Redaction Service Server V1
configuration-service.url: "http://configuration-service-v1:8080"
image-service.url: "http://image-service-v1:8080"
server:
port: 8080
@@ -4,8 +4,12 @@ import static org.assertj.core.api.Assertions.assertThat;
import static org.mockito.Mockito.when;
import static org.springframework.boot.test.context.SpringBootTest.WebEnvironment.RANDOM_PORT;
import java.awt.Color;
import java.awt.geom.AffineTransform;
import java.awt.geom.Rectangle2D;
import java.io.BufferedReader;
import java.io.ByteArrayInputStream;
import java.io.ByteArrayOutputStream;
import java.io.File;
import java.io.FileInputStream;
import java.io.FileOutputStream;
@@ -17,6 +21,7 @@ import java.nio.charset.StandardCharsets;
import java.time.OffsetDateTime;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
@@ -24,7 +29,15 @@ import java.util.UUID;
import java.util.stream.Collectors;
import org.apache.commons.io.IOUtils;
import org.apache.pdfbox.pdmodel.PDDocument;
import org.apache.pdfbox.pdmodel.PDPage;
import org.apache.pdfbox.pdmodel.PDPageContentStream;
import org.apache.pdfbox.pdmodel.common.PDRectangle;
import org.apache.pdfbox.pdmodel.graphics.image.PDImageXObject;
import org.apache.pdfbox.text.PDFTextStripperByArea;
import org.apache.pdfbox.util.Matrix;
import org.junit.Before;
import org.junit.Ignore;
import org.junit.Test;
import org.junit.runner.RunWith;
import org.kie.api.KieServices;
@@ -32,6 +45,7 @@ import org.kie.api.builder.KieBuilder;
import org.kie.api.builder.KieFileSystem;
import org.kie.api.builder.KieModule;
import org.kie.api.runtime.KieContainer;
import org.mockito.MockitoAnnotations;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.boot.test.context.SpringBootTest;
import org.springframework.boot.test.context.TestConfiguration;
@@ -40,7 +54,9 @@ import org.springframework.context.annotation.Bean;
import org.springframework.core.io.ClassPathResource;
import org.springframework.test.context.junit4.SpringRunner;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.iqser.red.service.configuration.v1.api.model.Colors;
import com.iqser.red.service.configuration.v1.api.model.DictionaryEntry;
import com.iqser.red.service.configuration.v1.api.model.DictionaryResponse;
import com.iqser.red.service.configuration.v1.api.model.RulesResponse;
import com.iqser.red.service.configuration.v1.api.model.TypeResponse;
@@ -51,19 +67,33 @@ import com.iqser.red.service.redaction.v1.model.AnnotateRequest;
import com.iqser.red.service.redaction.v1.model.AnnotateResponse;
import com.iqser.red.service.redaction.v1.model.Comment;
import com.iqser.red.service.redaction.v1.model.IdRemoval;
import com.iqser.red.service.redaction.v1.model.ManualForceRedact;
import com.iqser.red.service.redaction.v1.model.ManualRedactionEntry;
import com.iqser.red.service.redaction.v1.model.ManualRedactions;
import com.iqser.red.service.redaction.v1.model.Point;
import com.iqser.red.service.redaction.v1.model.ReanalyzeResult;
import com.iqser.red.service.redaction.v1.model.Rectangle;
import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
import com.iqser.red.service.redaction.v1.model.RedactionRequest;
import com.iqser.red.service.redaction.v1.model.RedactionResult;
import com.iqser.red.service.redaction.v1.model.RenalyzeRequest;
import com.iqser.red.service.redaction.v1.model.SectionArea;
import com.iqser.red.service.redaction.v1.model.SectionText;
import com.iqser.red.service.redaction.v1.model.Status;
import com.iqser.red.service.redaction.v1.server.classification.model.Paragraph;
import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
import com.iqser.red.service.redaction.v1.server.client.DictionaryClient;
import com.iqser.red.service.redaction.v1.server.client.ImageClassificationClient;
import com.iqser.red.service.redaction.v1.server.client.RulesClient;
import com.iqser.red.service.redaction.v1.server.controller.RedactionController;
import com.iqser.red.service.redaction.v1.server.exception.RedactionException;
import com.iqser.red.service.redaction.v1.server.parsing.PDFAreaTextStripper;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.model.CellValue;
import com.iqser.red.service.redaction.v1.server.redaction.model.ReanalysisSection;
import com.iqser.red.service.redaction.v1.server.redaction.utils.ResourceLoader;
import com.iqser.red.service.redaction.v1.server.redaction.utils.TextNormalizationUtilities;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Cell;
@RunWith(SpringRunner.class)
@SpringBootTest(webEnvironment = RANDOM_PORT)
@@ -93,12 +123,18 @@ public class RedactionIntegrationTest {
@Autowired
private RedactionController redactionController;
@Autowired
private ObjectMapper objectMapper;
@MockBean
private RulesClient rulesClient;
@MockBean
private DictionaryClient dictionaryClient;
@MockBean
private ImageClassificationClient imageClassificationClient;
private final Map<String, List<String>> dictionary = new HashMap<>();
private final Map<String, String> typeColorMap = new HashMap<>();
private final Map<String, Boolean> hintTypeMap = new HashMap<>();
@@ -106,6 +142,7 @@ public class RedactionIntegrationTest {
private final Map<String, Boolean> recommendationTypeMap = new HashMap<>();
private final Map<String, Integer> rankTypeMap = new HashMap<>();
private final Colors colors = new Colors();
private final Map<String, Long> reanlysisVersions = new HashMap<>();
private final static String TEST_RULESET_ID = "123";
@@ -324,7 +361,6 @@ public class RedactionIntegrationTest {
recommendationTypeMap.put(PURITY, false);
recommendationTypeMap.put(IMAGE, false);
rankTypeMap.put(FALSE_POSITIVE, 160);
rankTypeMap.put(PURITY, 155);
rankTypeMap.put(PII, 150);
@@ -342,7 +378,6 @@ public class RedactionIntegrationTest {
rankTypeMap.put(RECOMMENDATION_ADDRESS, 30);
rankTypeMap.put(IMAGE, 30);
colors.setDefaultColor("#acfc00");
colors.setNotRedacted("#cccccc");
colors.setRequestAdd("#04b093");
@@ -372,7 +407,7 @@ public class RedactionIntegrationTest {
return DictionaryResponse.builder()
.hexColor(typeColorMap.get(type))
.entries(dictionary.get(type))
.entries(toDictionaryEntry(dictionary.get(type)))
.isHint(hintTypeMap.get(type))
.isCaseInsensitive(caseInSensitiveMap.get(type))
.isRecommendation(recommendationTypeMap.get(type))
@@ -381,6 +416,16 @@ public class RedactionIntegrationTest {
}
private List<DictionaryEntry> toDictionaryEntry(List<String> entries) {
List<DictionaryEntry> dictionaryEntries = new ArrayList<>();
entries.forEach(entry -> {
dictionaryEntries.add(new DictionaryEntry(entry, reanlysisVersions.containsKey(entry) ? reanlysisVersions.get(entry) : 0L, false));
});
return dictionaryEntries;
}
@Test
public void noExceptionShouldBeThrownForAnyFiles() throws IOException {
@@ -409,6 +454,22 @@ public class RedactionIntegrationTest {
duplicates.entrySet().forEach(entry -> {
assertThat(entry.getValue().size()).isEqualTo(1);
});
dictionary.get(AUTHOR).add("Drinking water");
when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(1L);
long rstart = System.currentTimeMillis();
ReanalyzeResult reanalyzeResult = redactionController.reanalyze(RenalyzeRequest.builder()
.redactionLog(result.getRedactionLog())
.document(IOUtils.toByteArray(new FileInputStream(path)))
.manualRedactions(null)
.text(result.getText())
.ruleSetId(TEST_RULESET_ID)
.build());
long rend = System.currentTimeMillis();
System.out.println("reanalysis analysis duration: " + (rend - rstart));
}
long end = System.currentTimeMillis();
@@ -441,27 +502,85 @@ public class RedactionIntegrationTest {
System.out.println("redactionTest");
long start = System.currentTimeMillis();
ClassPathResource pdfFileResource = new ClassPathResource("files/Metolachlor/S-Metolachlor_RAR_01_Volume_1_2018-09-06.pdf");
ClassPathResource pdfFileResource = new ClassPathResource("files/new/Single Study - Oral (Gavage) Mouse.pdf");
AnalyzeRequest request = AnalyzeRequest.builder()
.ruleSetId(TEST_RULESET_ID)
.document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
.build();
AnalyzeResult result = redactionController.analyze(request);
AnnotateResponse annotateResponse = redactionController.annotate(AnnotateRequest.builder().document(IOUtils.toByteArray(pdfFileResource.getInputStream())).redactionLog(result.getRedactionLog()).sectionGrid(result.getSectionGrid()).build());
result.getRedactionLog().getRedactionLogEntry().forEach(entry -> {
if (entry.isImage()) {
System.out.println("---->" + entry.getType());
}
});
long end = System.currentTimeMillis();
System.out.println("first analysis duration: " + (end - start));
try (FileOutputStream fileOutputStream = new FileOutputStream("/tmp/Test.json")) {
fileOutputStream.write(objectMapper.writeValueAsBytes(result.getText()));
}
int correctFound = 0;
loop:
for (RedactionLogEntry redactionLogEntry : result.getRedactionLog().getRedactionLogEntry()) {
for (SectionText sectionText : result.getText().getSectionTexts()) {
if (redactionLogEntry.isImage()) {
correctFound++;
continue loop;
}
if (redactionLogEntry.getSectionNumber() == sectionText.getSectionNumber()) {
String value = sectionText.getText()
.substring(redactionLogEntry.getStartOffset(), redactionLogEntry.getEndOffset());
if (redactionLogEntry.getValue().equalsIgnoreCase(value)) {
correctFound++;
} else {
throw new RuntimeException("WTF");
}
}
}
}
assertThat(correctFound).isEqualTo(result.getRedactionLog().getRedactionLogEntry().size());
dictionary.get(AUTHOR).add("properties");
reanlysisVersions.put("properties", 1L);
dictionary.get(AUTHOR).add("physical");
reanlysisVersions.put("physical", 2L);
dictionary.get(VERTEBRATE).add("s-metolachlor");
reanlysisVersions.put("s-metolachlor", 3L);
when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(3L);
when(dictionaryClient.getDictionaryForType(VERTEBRATE, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(VERTEBRATE));
start = System.currentTimeMillis();
ReanalyzeResult reanalyzeResult = redactionController.reanalyze(RenalyzeRequest.builder()
.redactionLog(result.getRedactionLog())
.document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
.manualRedactions(null)
.text(result.getText())
.ruleSetId(TEST_RULESET_ID)
.build());
end = System.currentTimeMillis();
System.out.println("reanalysis analysis duration: " + (end - start));
AnnotateResponse annotateResponse = redactionController.annotate(AnnotateRequest.builder()
.document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
.redactionLog(reanalyzeResult.getRedactionLog())
.sectionGrid(result.getSectionGrid())
.build());
try (FileOutputStream fileOutputStream = new FileOutputStream("/tmp/Annotated.pdf")) {
fileOutputStream.write(annotateResponse.getDocument());
}
long end = System.currentTimeMillis();
System.out.println("duration: " + (end - start));
System.out.println("numberOfPages: " + result.getNumberOfPages());
}
@@ -477,11 +596,13 @@ public class RedactionIntegrationTest {
.document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
.build();
AnalyzeResult result = redactionController.analyze(request);
AnnotateResponse annotateResponse = redactionController.annotate(AnnotateRequest.builder().document(IOUtils.toByteArray(pdfFileResource.getInputStream())).redactionLog(result.getRedactionLog()).sectionGrid(result.getSectionGrid()).build());
AnnotateResponse annotateResponse = redactionController.annotate(AnnotateRequest.builder()
.document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
.redactionLog(result.getRedactionLog())
.sectionGrid(result.getSectionGrid())
.build());
try (FileOutputStream fileOutputStream = new FileOutputStream("/tmp/Annotated.pdf")) {
fileOutputStream.write(annotateResponse.getDocument());
@@ -496,6 +617,8 @@ public class RedactionIntegrationTest {
@Test
public void testManualRedaction() throws IOException {
// 675eba69b0c2917de55462c817adaa05
System.out.println("testManualRedaction");
long start = System.currentTimeMillis();
ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Single Table.pdf");
@@ -510,8 +633,13 @@ public class RedactionIntegrationTest {
.text("This is a comment test")
.build();
manualRedactions.setIdsToRemove(Set.of(IdRemoval.builder()
.id("0836727c3508a0b2ea271da69c04cc2f")
.status(Status.REQUESTED)
.id("5b940b2cb401ed9f5be6fc24f6e77bcf")
.status(Status.DECLINED)
.build()));
manualRedactions.setForceRedacts(Set.of(ManualForceRedact.builder()
.id("675eba69b0c2917de55462c817adaa05")
.legalBasis("Something")
.status(Status.APPROVED)
.build()));
manualRedactions.getComments().put("e5be0f1d941bbb92a068e198648d06c4", List.of(comment));
@@ -526,7 +654,7 @@ public class RedactionIntegrationTest {
manualRedactionEntry.setReason("Manual Redaction");
manualRedactionEntry.setPositions(List.of(new Rectangle(new Point(375.61096f, 241.282f), 7.648041f, 43.72262f, 1), new Rectangle(new Point(384.83517f, 241.282f), 7.648041f, 17.043358f, 1)));
manualRedactions.getEntriesToAdd().add(manualRedactionEntry);
// manualRedactions.getEntriesToAdd().add(manualRedactionEntry);
AnalyzeRequest request = AnalyzeRequest.builder()
.ruleSetId(TEST_RULESET_ID)
@@ -534,11 +662,27 @@ public class RedactionIntegrationTest {
.manualRedactions(manualRedactions)
.build();
AnalyzeResult result = redactionController.analyze(request);
AnnotateResponse annotateResponse = redactionController.annotate(AnnotateRequest.builder().document(IOUtils.toByteArray(pdfFileResource.getInputStream())).redactionLog(result.getRedactionLog()).sectionGrid(result.getSectionGrid()).build());
manualRedactions.getEntriesToAdd().add(manualRedactionEntry);
manualRedactions.setIdsToRemove(Set.of(IdRemoval.builder()
.id("5b940b2cb401ed9f5be6fc24f6e77bcf")
.status(Status.APPROVED)
.build()));
ReanalyzeResult reanalyzeResult = redactionController.reanalyze(RenalyzeRequest.builder()
.redactionLog(result.getRedactionLog())
.document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
.manualRedactions(manualRedactions)
.text(result.getText())
.ruleSetId(TEST_RULESET_ID)
.build());
AnnotateResponse annotateResponse = redactionController.annotate(AnnotateRequest.builder()
.document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
.redactionLog(reanalyzeResult.getRedactionLog())
.sectionGrid(result.getSectionGrid())
.build());
try (FileOutputStream fileOutputStream = new FileOutputStream("/tmp/Annotated.pdf")) {
fileOutputStream.write(annotateResponse.getDocument());
@@ -590,7 +734,7 @@ public class RedactionIntegrationTest {
public void htmlTablesTest() throws IOException {
System.out.println("htmlTablesTest");
ClassPathResource pdfFileResource = new ClassPathResource("files/Fludioxonil/52 Fludioxonil_RAR_07_Volume_3CA_B-5_2018-02-21.pdf");
ClassPathResource pdfFileResource = new ClassPathResource("files/Metolachlor/S-Metolachlor_RAR_02_Volume_2_2018-09-06.pdf");
RedactionRequest request = RedactionRequest.builder()
.document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
@@ -632,7 +776,6 @@ public class RedactionIntegrationTest {
.document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
.build();
AnalyzeResult result = redactionController.analyze(request);
result.getRedactionLog().getRedactionLogEntry().forEach(entry -> {
@@ -654,11 +797,13 @@ public class RedactionIntegrationTest {
.document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
.build();
AnalyzeResult result = redactionController.analyze(request);
AnnotateResponse annotateResponse = redactionController.annotate(AnnotateRequest.builder().document(IOUtils.toByteArray(pdfFileResource.getInputStream())).redactionLog(result.getRedactionLog()).sectionGrid(result.getSectionGrid()).build());
AnnotateResponse annotateResponse = redactionController.annotate(AnnotateRequest.builder()
.document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
.redactionLog(result.getRedactionLog())
.sectionGrid(result.getSectionGrid())
.build());
try (FileOutputStream fileOutputStream = new FileOutputStream("/tmp/Annotated.pdf")) {
fileOutputStream.write(annotateResponse.getDocument());
@@ -1,6 +1,7 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import com.iqser.red.service.configuration.v1.api.model.Colors;
import com.iqser.red.service.configuration.v1.api.model.DictionaryEntry;
import com.iqser.red.service.configuration.v1.api.model.DictionaryResponse;
import com.iqser.red.service.configuration.v1.api.model.RulesResponse;
import com.iqser.red.service.configuration.v1.api.model.TypeResponse;
@@ -129,12 +130,12 @@ public class EntityRedactionServiceTest {
.build();
DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
.entries(Arrays.asList("Casey, H.W.", "O’Loughlin, C.K.", "Salamon, C.M.", "Smith, S.H."))
.entries(toDictionaryEntry(Arrays.asList("Casey, H.W.", "O’Loughlin, C.K.", "Salamon, C.M.", "Smith, S.H.")))
.build();
when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
DictionaryResponse addressResponse = DictionaryResponse.builder()
.entries(Collections.singletonList("Toxigenics, Inc., Decatur, IL 62526, USA"))
.entries(toDictionaryEntry(Collections.singletonList("Toxigenics, Inc., Decatur, IL 62526, USA")))
.build();
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID)).thenReturn(addressResponse);
@@ -162,12 +163,12 @@ public class EntityRedactionServiceTest {
.build();
DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
.entries(Arrays.asList("Casey, H.W.", "O’Loughlin, C.K.", "Salamon, C.M.", "Smith, S.H."))
.entries(toDictionaryEntry(Arrays.asList("Casey, H.W.", "O’Loughlin, C.K.", "Salamon, C.M.", "Smith, S.H.")))
.build();
when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
DictionaryResponse addressResponse = DictionaryResponse.builder()
.entries(Collections.singletonList("Toxigenics, Inc., Decatur, IL 62526, USA"))
.entries(toDictionaryEntry(Collections.singletonList("Toxigenics, Inc., Decatur, IL 62526, USA")))
.build();
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID)).thenReturn(addressResponse);
DictionaryResponse sponsorResponse = DictionaryResponse.builder()
@@ -191,11 +192,11 @@ public class EntityRedactionServiceTest {
" Supplement - Identity of the active substance - Reference list.pdf");
when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
.entries(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_author.txt")))
.entries(toDictionaryEntry(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_author.txt"))))
.build();
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
DictionaryResponse addressResponse = DictionaryResponse.builder()
.entries(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_address.txt")))
.entries(toDictionaryEntry(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_address.txt"))))
.build();
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID)).thenReturn(addressResponse);
DictionaryResponse sponsorResponse = DictionaryResponse.builder()
@@ -228,15 +229,15 @@ public class EntityRedactionServiceTest {
ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Row With Ambiguous Redaction.pdf");
when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
.entries(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_author.txt")))
.entries(toDictionaryEntry(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_author.txt"))))
.build();
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
DictionaryResponse addressResponse = DictionaryResponse.builder()
.entries(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_address.txt")))
.entries(toDictionaryEntry(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_address.txt"))))
.build();
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID)).thenReturn(addressResponse);
DictionaryResponse sponsorResponse = DictionaryResponse.builder()
.entries(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_sponsor.txt")))
.entries(toDictionaryEntry(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_sponsor.txt"))))
.build();
when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_RULESET_ID)).thenReturn(sponsorResponse);
try (PDDocument pdDocument = PDDocument.load(pdfFileResource.getInputStream())) {
@@ -297,11 +298,11 @@ public class EntityRedactionServiceTest {
ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Applicant Producer Table.pdf");
when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
.entries(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_author.txt")))
.entries(toDictionaryEntry(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_author.txt"))))
.build();
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
DictionaryResponse addressResponse = DictionaryResponse.builder()
.entries(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_address.txt")))
.entries(toDictionaryEntry(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_address.txt"))))
.build();
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID)).thenReturn(addressResponse);
DictionaryResponse sponsorResponse = DictionaryResponse.builder()
@@ -346,7 +347,7 @@ public class EntityRedactionServiceTest {
.build();
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(authorResponse);
DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
.entries(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_sponsor.txt")))
.entries(toDictionaryEntry(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_sponsor.txt"))))
.build();
when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
try (PDDocument pdDocument = PDDocument.load(pdfFileResource.getInputStream())) {
@@ -367,13 +368,13 @@ public class EntityRedactionServiceTest {
ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Header Propagation.pdf");
DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
.entries(Arrays.asList("Bissig R.", "Thanei P."))
.entries(toDictionaryEntry(Arrays.asList("Bissig R.", "Thanei P.")))
.build();
when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
DictionaryResponse addressResponse = DictionaryResponse.builder()
.entries(Collections.singletonList("Novartis Crop Protection AG, Basel, Switzerland"))
.entries(toDictionaryEntry(Collections.singletonList("Novartis Crop Protection AG, Basel, Switzerland")))
.build();
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID)).thenReturn(addressResponse);
@@ -392,13 +393,13 @@ public class EntityRedactionServiceTest {
pdfFileResource = new ClassPathResource("files/Minimal Examples/Header Propagation2.pdf");
dictionaryResponse = DictionaryResponse.builder()
.entries(Arrays.asList("Tribolet, R.", "Muir, G.", "Kühne-Thu, H.", "Close, C."))
.entries(toDictionaryEntry(Arrays.asList("Tribolet, R.", "Muir, G.", "Kühne-Thu, H.", "Close, C.")))
.build();
when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
addressResponse = DictionaryResponse.builder()
.entries(Collections.singletonList("Novartis Crop Protection AG, Basel, Switzerland"))
.entries(toDictionaryEntry(Collections.singletonList("Novartis Crop Protection AG, Basel, Switzerland")))
.build();
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID)).thenReturn(addressResponse);
@@ -419,13 +420,13 @@ public class EntityRedactionServiceTest {
ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Empty Tabular Data.pdf");
DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
.entries(Collections.singletonList("Aldershof S."))
.entries(toDictionaryEntry(Collections.singletonList("Aldershof S.")))
.build();
when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
DictionaryResponse addressResponse = DictionaryResponse.builder()
.entries(Collections.singletonList("Novartis Crop Protection AG, Basel, Switzerland"))
.entries(toDictionaryEntry(Collections.singletonList("Novartis Crop Protection AG, Basel, Switzerland")))
.build();
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID)).thenReturn(addressResponse);
@@ -517,4 +518,12 @@ public class EntityRedactionServiceTest {
}
}
private List<DictionaryEntry> toDictionaryEntry(List<String> entries){
List<DictionaryEntry> dictionaryEntries = new ArrayList<>();
entries.forEach(entry -> {
dictionaryEntries.add(new DictionaryEntry(entry, 1L, false));
});
return dictionaryEntries;
}
}
@@ -1,4 +1,5 @@
configuration-service.url: "http://configuration-service-v1:8080"
image-service.url: "http://image-service-v1:8080"
ribbon:
ConnectTimeout: 600000
@@ -12,3 +13,6 @@ processing.kafkastreams: false
platform.multi-tenancy:
enabled: false
redaction-service:
enable-image-classification: false
@@ -20,145 +20,69 @@ rule "1: Redact CBI Authors"
when
Section(matchesType("CBI_author") || matchesType("recommendation_CBI_author"))
then
section.redact("CBI_author", 1, "Author found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
section.redact("CBI_author", 1, "Author found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
end
rule "2: Redacted because Section contains Vertebrate"
rule "2: Redact CBI Address"
when
Section(matchesType("vertebrate"))
Section(matchesType("CBI_address") || matchesType("recommendation_CBI_address"))
then
section.redact("CBI_address", 2, "Vertebrate found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
section.redact("CBI_address", 2, "Address found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
end
rule "3: Not Redacted because Section contains no Vertebrate"
rule "3: Do not redact genitive CBI_author"
when
Section(!matchesType("vertebrate"))
Section(matchesType("CBI_author") || matchesType("recommendation_CBI_author"))
then
section.redactNot("CBI_address", 3, "No Vertebrate found");
section.expandToHintAnnotationByRegEx("CBI_author", "['’’'ʼˈ´`‘′ʻ’']s", false, 0, "test_method");
section.expandToHintAnnotationByRegEx("recommendation_CBI_author", "['’’'ʼˈ´`‘′ʻ’']s", false, 0, "test_method");
end
rule "4: Do not redact Names and Addresses if no redaction Indicator is contained"
when
Section(matchesType("vertebrate"), matchesType("no_redaction_indicator"))
then
section.redactNot("CBI_address", 4, "Vertebrate and No Redaction Indicator found");
end
rule "5: Redact Names and Addresses if no_redaction_indicator and redaction_indicator is contained"
when
Section(matchesType("vertebrate"), matchesType("no_redaction_indicator"), matchesType("redaction_indicator"))
then
section.redact("CBI_address", 5, "Vertebrate and Redaction Indicator found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
end
rule "6: Redact Authors and Addresses in Reference Table if it is a Vertebrate study"
rule "4: Redact Author(s) cells in Tables with Author(s) header"
when
Section(hasTableHeader("Author(s)") && !hasTableHeader("Vertebrate study Y/N"))
then
section.redactCell("Author(s)", 6, "CBI_author", false, "Author found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
section.redactCell("Author(s)", 4, "CBI_author", false, "Author found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
end
rule "7: Redact Authors and Addresses in Reference Table if it is a Vertebrate study"
rule "5: Redact Author cells in Tables with Author header"
when
Section(hasTableHeader("Author") && !hasTableHeader("Vertebrate study Y/N"))
then
section.redactCell("Author", 7, "CBI_author", false, "Author found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
section.redactCell("Author", 5, "CBI_author", false, "Author found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
end
rule "8: Not redacted because Vertebrate Study = N"
rule "6: Redact and recommand Authors in Tables with Vertebrate study Y/N header"
when
Section(rowEquals("Vertebrate study Y/N", "N") || rowEquals("Vertebrate study Y/N", "No"))
Section(rowEquals("Vertebrate study Y/N", "Y") || rowEquals("Vertebrate study Y/N", "Yes") || rowEquals("Vertebrate study Y/N", "N") || rowEquals("Vertebrate study Y/N", "No"))
then
section.redactCell("Author(s)", 8, "CBI_author", true, "Author found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
section.redactNot("CBI_address", 8, "Not redacted because row is not a vertebrate study");
section.highlightCell("Vertebrate study Y/N", 8, "hint_only");
section.redactCell("Author(s)", 6, "CBI_author", true, "Author found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
end
rule "9: Redact if must redact entry is found"
when
Section(matchesType("must_redact"))
then
section.redact("CBI_address", 9, "must_redact entry was found.", "Reg (EC) No 1107/2009 Art. 63 (2g)");
end
rule "10: Redact Authors and Addresses in Reference Table if it is a Vertebrate study"
when
Section(rowEquals("Vertebrate study Y/N", "Y") || rowEquals("Vertebrate study Y/N", "Yes"))
then
section.redactCell("Author(s)", 10, "CBI_author", true, "Author found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
section.redact("CBI_address", 10, "Redacted because row is a vertebrate study", "Reg (EC) No 1107/2009 Art. 63 (2g)");
section.highlightCell("Vertebrate study Y/N", 10, "must_redact");
end
rule "11: Redact sponsor company"
when
Section(searchText.toLowerCase().contains("batches produced at"))
then
section.redactIfPrecededBy("batches produced at", "CBI_sponsor", 11, "Redacted because it represents a sponsor company", "Reg (EC) No 1107/2009 Art. 63 (2g)");
section.addHintAnnotation("batches produced at", "must_redact");
end
rule "12: Redact determination of residues"
when
Section((
searchText.toLowerCase.contains("determination of residues") ||
searchText.toLowerCase.contains("determination of total residues")
) && (
searchText.toLowerCase.contains("livestock") ||
searchText.toLowerCase.contains("live stock") ||
searchText.toLowerCase.contains("tissue") ||
searchText.toLowerCase.contains("tissues") ||
searchText.toLowerCase.contains("liver") ||
searchText.toLowerCase.contains("muscle") ||
searchText.toLowerCase.contains("bovine") ||
searchText.toLowerCase.contains("ruminant") ||
searchText.toLowerCase.contains("ruminants")
))
then
section.redact("CBI_address", 12, "Determination of residues was found.", "Reg (EC) No 1107/2009 Art. 63 (2g)");
section.addHintAnnotation("determination of residues", "must_redact");
section.addHintAnnotation("determination of total residues", "must_redact");
section.addHintAnnotation("livestock", "must_redact");
section.addHintAnnotation("live stock", "must_redact");
section.addHintAnnotation("tissue", "must_redact");
section.addHintAnnotation("tissues", "must_redact");
section.addHintAnnotation("liver", "must_redact");
section.addHintAnnotation("muscle", "must_redact");
section.addHintAnnotation("bovine", "must_redact");
section.addHintAnnotation("ruminant", "must_redact");
section.addHintAnnotation("ruminants", "must_redact");
end
rule "13: Redact if CTL/* or BL/* was found"
rule "7: Redact if CTL/* or BL/* was found"
when
Section(searchText.contains("CTL/") || searchText.contains("BL/"))
then
section.redact("CBI_address", 13, "Laboraty for vertebrate studies found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
section.addHintAnnotation("CTL", "must_redact");
section.addHintAnnotation("BL", "must_redact");
section.addRedaction("CTL", "must_redact", 7, "Laboratory for vertebrate studies found", "Article 39(1)(2) of Regulation (EC) No 178/2002" );
section.addRedaction("BL", "must_redact", 7, "Laboratory for vertebrate studies found", "Article 39(1)(2) of Regulation (EC) No 178/2002" );
end
rule "14: Redact and add recommendation for et al. author"
rule "8: Redact and add recommendation for et al. author"
when
Section(searchText.contains("et al"))
then
section.redactAndRecommendByRegEx("\\b([A-ZÄÖÜ][^\\s\\.,]+( [A-ZÄÖÜ]{1,2}\\.?)?( ?[A-ZÄÖÜ]\\.?)?) et al\\.?", false, 1, "CBI_author", 14, "Author found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
section.redactAndRecommendByRegEx("\\b([A-ZÄÖÜ][^\\s\\.,]+( [A-ZÄÖÜ]{1,2}\\.?)?( ?[A-ZÄÖÜ]\\.?)?) et al\\.?", false, 1, "CBI_author", 8, "Author found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
end
rule "15: Add recommendation for Addresses in Test Organism sections"
rule "9: Add recommendation for Addresses in Test Organism sections"
when
Section(searchText.contains("Species:") && searchText.contains("Source:"))
then
@@ -166,7 +90,7 @@ rule "15: Add recommendation for Addresses in Test Organism sections"
end
rule "16: Add recommendation for Addresses in Test Animals sections"
rule "10: Add recommendation for Addresses in Test Animals sections"
when
Section(searchText.contains("Species") && searchText.contains("Source"))
then
@@ -174,34 +98,35 @@ rule "16: Add recommendation for Addresses in Test Animals sections"
end
rule "17: Do not redact Names and Addresses if no redaction Indicator is contained"
rule "11: Do not redact Names and Addresses if Published Information found"
when
Section(matchesType("published_information"))
then
section.redactNot("CBI_author", 17, "Vertebrate and Published Information found");
section.redactNot("CBI_address", 17, "Vertebrate and Published Information found");
section.redactNot("CBI_author", 11, "Published Information found");
section.redactNot("CBI_address", 11, "Published Information found");
end
// --------------------------------------- PII rules -------------------------------------------------------------------
rule "18: Redacted PII Personal Identification Information"
rule "12: Redacted PII Personal Identification Information"
when
Section(matchesType("PII"))
then
section.redact("PII", 18, "PII (Personal Identification Information) found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redact("PII", 12, "PII (Personal Identification Information) found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
end
rule "19: Redact Emails by RegEx"
rule "13: Redact Emails by RegEx"
when
Section(searchText.contains("@"))
then
section.redactByRegEx("\\b[A-Z0-9._%+-]+@[A-Z0-9.-]+\\.[A-Z]{2,4}\\b", true, 0, "PII", 19, "PII (Personal Identification Information) found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactByRegEx("\\b[A-Z0-9._%+-]+@[A-Z0-9.-]+\\.[A-Z]{2,4}\\b", true, 0, "PII", 13, "PII (Personal Identification Information) found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
end
rule "20: Redact contact information"
rule "14: Redact contact information"
when
Section(text.contains("Contact point:")
|| text.contains("Phone:")
@@ -217,108 +142,120 @@ rule "20: Redact contact information"
|| text.contains("Telephone No:")
|| text.contains("Fax number:")
|| text.contains("Telephone:")
|| text.contains("Phone No.")
|| text.contains("European contact:"))
then
section.redactLineAfter("Contact point:", "PII", 20, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Phone:", "PII", 20, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Fax:", "PII", 20, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Tel.:", "PII", 20, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Tel:", "PII", 20, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("E-mail:", "PII", 20, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Email:", "PII", 20, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("e-mail:", "PII", 20, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("E-mail address:", "PII", 20, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Contact:", "PII", 20, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Alternative contact:", "PII", 20, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Telephone number:", "PII", 20, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Telephone No:", "PII", 20, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Fax number:", "PII", 20, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Telephone:", "PII", 20, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactBetween("No:", "Fax", "PII", 20, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactBetween("Contact:", "Tel.:", "PII", 20, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("European contact:", "PII", 20, true, "Contact information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Contact point:", "PII", 14, true, "Contact information was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Phone:", "PII", 14, true, "Contact information was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Fax:", "PII", 14, true, "Contact information was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Tel.:", "PII", 14, true, "Contact information was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Tel:", "PII", 14, true, "Contact information was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("E-mail:", "PII", 14, true, "Contact information was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Email:", "PII", 14, true, "Contact information was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("e-mail:", "PII", 14, true, "Contact information was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("E-mail address:", "PII", 14, true, "Contact information was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Contact:", "PII", 14, true, "Contact information was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Alternative contact:", "PII", 14, true, "Contact information was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Telephone number:", "PII", 14, true, "Contact information was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Telephone No:", "PII", 14, true, "Contact information was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Fax number:", "PII", 14, true, "Contact information was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Telephone:", "PII", 14, true, "Contact information was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Phone No.", "PII", 14, true, "Contact information was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactBetween("No:", "Fax", "PII", 14, true, "Contact information was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactBetween("Contact:", "Tel.:", "PII", 14, true, "Contact information was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("European contact:", "PII", 14, true, "Contact information was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
end
rule "21: Redact contact information if applicant is found"
rule "15: Redact contact information if applicant is found"
when
Section(headlineContainsWord("applicant") || text.contains("Applicant") || headlineContainsWord("Primary contact") || headlineContainsWord("Alternative contact") || text.contains("Telephone number:"))
then
section.redactLineAfter("Contact point:", "PII", 21, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Phone:", "PII", 21, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Fax:", "PII", 21, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Tel.:", "PII", 21, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Tel:", "PII", 21, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("E-mail:", "PII", 21, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Email:", "PII", 21, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("e-mail:", "PII", 21, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("E-mail address:", "PII", 21, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Contact:", "PII", 21, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Alternative contact:", "PII", 21, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Telephone number:", "PII", 21, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Telephone No:", "PII", 21, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Fax number:", "PII", 21, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Telephone:", "PII", 21, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactBetween("No:", "Fax", "PII", 21, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactBetween("Contact:", "Tel.:", "PII", 21, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("European contact:", "PII", 21, true, "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Contact point:", "PII", 15, true, "Applicant information was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Phone:", "PII", 15, true, "Applicant information was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Fax:", "PII", 15, true, "Applicant information was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Tel.:", "PII", 15, true, "Applicant information was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Tel:", "PII", 15, true, "Applicant information was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("E-mail:", "PII", 15, true, "Applicant information was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Email:", "PII", 15, true, "Applicant information was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("e-mail:", "PII", 15, true, "Applicant information was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("E-mail address:", "PII", 15, true, "Applicant information was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Contact:", "PII", 15, true, "Applicant information was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Alternative contact:", "PII", 15, true, "Applicant information was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Telephone number:", "PII", 15, true, "Applicant information was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Telephone No:", "PII", 15, true, "Applicant information was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Fax number:", "PII", 15, true, "Applicant information was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Telephone:", "PII", 15, true, "Applicant information was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Phone No.", "PII", 15, true, "Applicant information was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactBetween("No:", "Fax", "PII", 15, true, "Applicant information was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactBetween("Contact:", "Tel.:", "PII", 15, true, "Applicant information was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("European contact:", "PII", 15, true, "Applicant information was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
end
rule "22: Redact contact information if Producer is found"
rule "16: Redact contact information if Producer is found"
when
Section(text.toLowerCase().contains("producer of the plant protection") || text.toLowerCase().contains("producer of the active substance") || text.contains("Manufacturer of the active substance") || text.contains("Manufacturer:") || text.contains("Producer or producers of the active substance"))
then
section.redactLineAfter("Contact:", "PII", 22, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Telephone:", "PII", 22, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Phone:", "PII", 22, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Fax:", "PII", 22, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("E-mail:", "PII", 22, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Contact:", "PII", 22, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Fax number:", "PII", 22, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Telephone number:", "PII", 22, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Tel:", "PII", 22, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactBetween("No:", "Fax", "PII", 22, true, "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLineAfter("Contact:", "PII", 16, true, "Producer was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Telephone:", "PII", 16, true, "Producer was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Phone:", "PII", 16, true, "Producer was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Fax:", "PII", 16, true, "Producer was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("E-mail:", "PII", 16, true, "Producer was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Contact:", "PII", 16, true, "Producer was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Fax number:", "PII", 16, true, "Producer was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Telephone number:", "PII", 16, true, "Producer was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Tel:", "PII", 16, true, "Producer was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactLineAfter("Phone No.", "PII", 16, true, "Producer was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
section.redactBetween("No:", "Fax", "PII", 16, true, "Producer was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
end
rule "23: Redact AUTHOR(S)"
rule "17: Redact AUTHOR(S)"
when
Section(searchText.contains("AUTHOR(S):"))
then
section.redactLinesBetween("AUTHOR(S):", "COMPLETION DATE:", "PII", 23, true, "AUTHOR(S) was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactLinesBetween("AUTHOR(S):", "COMPLETION DATE:", "PII", 17, true, "AUTHOR(S) was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
end
rule "24: Redact PERFORMING LABORATORY"
rule "18: Redact PERFORMING LABORATORY"
when
Section(searchText.contains("PERFORMING LABORATORY:"))
then
section.redactBetween("PERFORMING LABORATORY:", "LABORATORY PROJECT ID:", "PII", 24, true, "PERFORMING LABORATORY was found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactBetween("PERFORMING LABORATORY:", "LABORATORY PROJECT ID:", "PII", 18, true, "PERFORMING LABORATORY was found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
end
rule "25: Redact On behalf of Sequani Ltd.:"
rule "19: Redact On behalf of Sequani Ltd.:"
when
Section(searchText.contains("On behalf of Sequani Ltd.: Name Title"))
then
section.redactBetween("On behalf of Sequani Ltd.: Name Title", "On behalf of", "PII", 25, false , "PII (Personal Identification Information) found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactBetween("On behalf of Sequani Ltd.: Name Title", "On behalf of", "PII", 19, false , "PII (Personal Identification Information) found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
end
rule "26: Redact On behalf of Syngenta Ltd.:"
rule "20: Redact On behalf of Syngenta Ltd.:"
when
Section(searchText.contains("On behalf of Syngenta Ltd.: Name Title"))
then
section.redactBetween("On behalf of Syngenta Ltd.: Name Title", "Study dates", "PII", 26, false , "PII (Personal Identification Information) found", "Reg (EC) No 1107/2009 Art. 63 (2e)");
section.redactBetween("On behalf of Syngenta Ltd.: Name Title", "Study dates", "PII", 20, false , "PII (Personal Identification Information) found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
end
// --------------------------------------- other rules -------------------------------------------------------------------
rule "27: Redact Purity"
rule "21: Purity Hint"
when
Section(searchText.contains("purity"))
Section(searchText.toLowerCase().contains("purity"))
then
section.redactByRegEx("purity ?:? (([\\d\\.]+)( .{0,4}\\.)? ?%)", true, 1, "purity", 27, "Purity found", "Reg (EC) No 1107/2009 Art. 63 (2a)");
section.addHintAnnotationByRegEx("(purity ?( of|\\(.{1,20}\\))?( ?:)?) .{0,5}[\\d\\.]+( .{0,4}\\.)? ?%", true, 1, "hint_only");
end
rule "22: Redact Must Redact"
when
Section(matchesType("must_redact"))
then
section.redact("must_redact", 22, "Must Redact found", "Article 39(1)(2) of Regulation (EC) No 178/2002");
end
@@ -10,7 +10,7 @@
<Root level="warn">
<AppenderRef ref="CONSOLE" />
</Root>
<Logger name="com.iqser.gin4" level="info" />
<Logger name="com.iqser" level="info" />
</Loggers>
</Configuration>