Compare commits

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Author SHA1 Message Date
Timo Bejan 571035dda1 Pull request #275: redaction-log info for RED-2659
Merge in RED/redaction-service from section-info to master

* commit '892fa6ade0c9f260183686535612e7423ed2ec09':
  redaction-log info for RED-2659
2021-11-22 13:49:44 +01:00
Timo Bejan 892fa6ade0 redaction-log info for RED-2659 2021-11-22 14:45:02 +02:00
Timo Bejan ab9dcbbafb Pull request #274: section info port
Merge in RED/redaction-service from section-info to master

* commit '980d14b6049c0e7f52c2cc4fffbffa7d5bf54b08':
  section info port
2021-11-22 08:51:10 +01:00
Timo Bejan 980d14b604 section info port 2021-11-22 09:46:12 +02:00
Timo Bejan 1cefa3dc05 Pull request #273: 2 new falgs for UI indicators
Merge in RED/redaction-service from redaction-log-updates to master

* commit 'f80eb6d791f35aa96249ef783e56164db85c8278':
  2 new falgs for UI indicators
2021-11-18 10:24:39 +01:00
Timo Bejan f80eb6d791 2 new falgs for UI indicators 2021-11-18 11:18:34 +02:00
Philipp Schramm e42d5180ec Pull request #272: RED-2430 do not exclude manual entries from excluded pages
Merge in RED/redaction-service from feature/RED-2430 to master

* commit '3ae8b2cd666eee2fff10e2254cd829084e503893':
  RED-2430 do not exclude manual entries from excluded pages
2021-11-16 08:53:19 +01:00
Philipp Schramm 3ae8b2cd66 RED-2430 do not exclude manual entries from excluded pages 2021-11-15 16:39:53 +01:00
Philipp Schramm a6a1d51c17 Pull request #271: RED-2633 Added section to manual redactions, updated version from persistence-service and extracted versions in pom.xm
Merge in RED/redaction-service from RED-2633 to master

* commit '6e713c4fcc010e6461e403256c4926974cec2cf8':
  RED-2633 Added section to manual redactions, updated version from persistence-service and extracted versions in pom.xm
2021-11-15 14:56:52 +01:00
Philipp Schramm 6e713c4fcc RED-2633 Added section to manual redactions, updated version from persistence-service and extracted versions in pom.xm 2021-11-15 14:36:35 +01:00
Dominique Eiflaender 2c6957360b Pull request #269: RED-2742: Fixed annotation positions for rotation = 0 and direction = 90
Merge in RED/redaction-service from RED-2742 to master

* commit 'a91877769370c804b7d9d9fa4d4e9e16752598bd':
  RED-2742: Fixed annotation positions for rotation = 0 and direction = 90
2021-11-12 10:16:52 +01:00
deiflaender a918777693 RED-2742: Fixed annotation positions for rotation = 0 and direction = 90 2021-11-12 10:06:27 +01:00
Dominique Eiflaender d8662e8e20 Pull request #266: RED-2624: Fixed footnote is recognized as headline
Merge in RED/redaction-service from RED-2624 to master

* commit '3c861074c9923a59fc71e2f57ee47c838ddbe3fe':
  RED-2624: Fixed footnote is recognized as headline
2021-11-03 12:25:43 +01:00
Dominique Eifländer 3c861074c9 RED-2624: Fixed footnote is recognized as headline 2021-11-03 12:11:38 +01:00
Dominique Eiflaender 3250d1791c Pull request #265: RED-2623: Fixed headline handline on strange ocr document
Merge in RED/redaction-service from RED-2623 to master

* commit '1b328b2b68da0b5be71d2f7464c767357003e4f2':
  RED-2623: Fixed headline handline on strange ocr document
2021-11-02 16:35:06 +01:00
Dominique Eifländer 1b328b2b68 RED-2623: Fixed headline handline on strange ocr document 2021-11-02 14:47:41 +01:00
Christoph  Schabert affed2258c Pull request #261: Split nightly and normal build
Merge in RED/redaction-service from RED-2312 to master

* commit '499c36b53d9b307c4899774e1d669482aa850a9f':
  Split nightly and normal build
2021-11-02 11:13:47 +01:00
Dominique Eiflaender 9d0973c037 Pull request #262: RED-2482: Always redact manual justification changes
Merge in RED/redaction-service from RED-2482-A to master

* commit '394e2fd4ed24e765e1bfc919688107a96af85fec':
  RED-2482: Always redact manual justification changes
2021-10-28 15:18:59 +02:00
Dominique Eifländer 394e2fd4ed RED-2482: Always redact manual justification changes 2021-10-28 15:09:34 +02:00
cschabert 499c36b53d Split nightly and normal build 2021-10-28 15:00:46 +02:00
Dominique Eiflaender 65b186be28 Pull request #259: RED-2536
Merge in RED/redaction-service from RED-2536 to master

* commit 'd892d6e81ee12927e57dc46c6439a65276824896':
  RED-2536: Treat \t same as whitespace
  RED-2223: Fixed stange end of textposition sequences that leads to wrong whitespaces
2021-10-28 12:52:47 +02:00
Dominique Eifländer d892d6e81e RED-2536: Treat \t same as whitespace 2021-10-28 12:42:18 +02:00
Dominique Eifländer 50017e7230 RED-2223: Fixed stange end of textposition sequences that leads to wrong whitespaces 2021-10-28 12:23:58 +02:00
Dominique Eiflaender 997317a683 Pull request #258: RED-2575: Fixed annotating entries on pages with cropbox != mediabox
Merge in RED/redaction-service from RED-2575 to master

* commit '012c5a794639eee34e392e940d5e380a5ea06df7':
  RED-2575: Fixed annotating entries on pages with cropbox != mediabox
2021-10-26 14:23:32 +02:00
Dominique Eifländer 012c5a7946 RED-2575: Fixed annotating entries on pages with cropbox != mediabox 2021-10-26 13:51:47 +02:00
Ali Oezyetimoglu a351761257 Pull request #256: RED-2429: As a user I want to resize a redaction
Merge in RED/redaction-service from RED-2429-rs1 to master

* commit 'd8f8702b2a78e7a3bc12e55791c251f3445d5b5e':
  RED-2429: As a user I want to resize a redaction
2021-10-22 12:23:54 +02:00
aoezyetimoglu d8f8702b2a RED-2429: As a user I want to resize a redaction 2021-10-22 12:05:31 +02:00
Dominique Eiflaender 0abcca97b3 Pull request #255: RED-2418: Fixed not working exception handling if redactionlog is not present
Merge in RED/redaction-service from RED-2418 to master

* commit 'f66a054cdea311376ffa88a6641b7eae9be6689f':
  RED-2418: Fixed not working exception handling if redactionlog is not present
2021-10-22 11:05:38 +02:00
Dominique Eifländer f66a054cde RED-2418: Fixed not working exception handling if redactionlog is not present 2021-10-22 10:33:42 +02:00
Dominique Eiflaender 0cc71897b8 Pull request #254: RED-2224: Fixed overriding entries with higher rank
Merge in RED/redaction-service from RED-2224-2 to master

* commit '634eee17167e01e2d4ee4d3d7b9613225e8c5643':
  RED-2224: Fixed overriding entries with higher rank
2021-10-19 15:38:44 +02:00
Dominique Eifländer 634eee1716 RED-2224: Fixed overriding entries with higher rank 2021-10-19 15:32:20 +02:00
Dominique Eiflaender fbad9a759b Pull request #253: RED-2224: Fixed missing values in engines
Merge in RED/redaction-service from RED-2224 to master

* commit 'fa8f598763efb334e21624df468d7e1802477076':
  RED-2224: Fixed missing values in engines
2021-10-19 11:45:38 +02:00
Dominique Eifländer fa8f598763 RED-2224: Fixed missing values in engines 2021-10-19 10:55:51 +02:00
Dominique Eiflaender 46c6385d11 Pull request #250: RED-2223: Fixed adding annotations to rotated words on non rotated pages
Merge in RED/redaction-service from RED-2223 to master

* commit '6005c476962dcdfd1d4e4fabf10fa840377b78db':
  RED-2223: Fixed adding annotations to rotated words on non rotated pages
2021-10-15 15:35:28 +02:00
Dominique Eifländer 6005c47696 RED-2223: Fixed adding annotations to rotated words on non rotated pages 2021-10-15 15:27:15 +02:00
Dominique Eiflaender ac556dfc9f Pull request #249: RED-2468: Fixed push recommendations to dictionary
Merge in RED/redaction-service from RED-2468 to master

* commit '15d836644b6a74273e81de361091d6ea1b71bea9':
  RED-2468: Fixed push recommendations to dictionary
2021-10-15 10:45:10 +02:00
Dominique Eifländer 15d836644b RED-2468: Fixed push recommendations to dictionary 2021-10-15 10:36:01 +02:00
Ali Oezyetimoglu d0cd3853cc Pull request #248: RED-2263: fixed Regex-Issue that can lead to stack overflow in redaction-service
Merge in RED/redaction-service from RED-2263-rs1 to master

* commit 'b96c39d5e58317e989faf8dc881ee6e596dbf363':
  RED-2263: fixed Regex-Issue that can lead to stack overflow in redaction-service
2021-10-14 13:21:58 +02:00
aoezyetimoglu b96c39d5e5 RED-2263: fixed Regex-Issue that can lead to stack overflow in redaction-service 2021-10-14 13:04:49 +02:00
Timo Bejan b83baf4bc4 Pull request #247: RED-2334
Merge in RED/redaction-service from 3.0-efsa-readiness to master

* commit '8bfe8acb85e33502f4978b12b5cc09f68a602f47':
  RED-2334
2021-10-13 09:24:16 +02:00
Timo Bejan 8bfe8acb85 RED-2334 2021-10-12 17:23:28 +03:00
Ali Oezyetimoglu 57f6bd77ed Pull request #246: RED-2246: updated platform-commons-dependency
Merge in RED/redaction-service from RED-2246-rs1 to master

* commit '15ed333478313f3f23d439ad6163553f9b68760e':
  RED-2246: updated platform-commons-dependency
2021-10-08 15:30:38 +02:00
aoezyetimoglu 15ed333478 RED-2246: updated platform-commons-dependency 2021-10-08 15:18:48 +02:00
Timo Bejan b3393a5f16 Pull request #245: RED-2378
Merge in RED/redaction-service from 3.0-efsa-readiness to master

* commit 'a299a326eb5587cd76b19ba848f5a771e2741edc':
  RED-2378
2021-10-08 13:59:30 +02:00
Timo Bejan a299a326eb RED-2378 2021-10-08 14:13:50 +03:00
Philipp Schramm 1034066e38 Pull request #244: Bugfix/workaround for windows
Merge in RED/redaction-service from bugfix/workaround-for-windows to master

* commit '535316c3a7740f61c682ae3d938f33671660c667':
  Bugfix with 'posix:permissions' for Windows systems
  Just a test without PosixFilePermission
2021-10-07 16:51:34 +02:00
Philipp Schramm 535316c3a7 Bugfix with 'posix:permissions' for Windows systems 2021-10-07 15:35:42 +02:00
Philipp Schramm 1e86073dff Just a test without PosixFilePermission 2021-10-07 14:35:44 +02:00
Philipp Schramm 5dc0e1932e Get temporary directory for tests dynamically to prevent issues with Windows systems 2021-10-07 14:12:39 +02:00
Philipp Schramm 8f75ff89a1 Use platform-docker-dependency version 1.1.0 which contains bugfix for Windows systems 2021-10-07 14:02:51 +02:00
Timo Bejan 1e61ea8736 Pull request #243: Updated Persistence Service Version
Merge in RED/redaction-service from 3.0-efsa-readiness to master

* commit '0fa4c54490422cf06f0a9034e3e9a83c78a66f6e':
  Updated Persistence Service Version
2021-10-07 09:12:46 +02:00
Timo Bejan 0fa4c54490 Updated Persistence Service Version 2021-10-07 10:06:36 +03:00
Dominique Eiflaender 243b4e4808 Pull request #242: RED-2172: Enbled to configure azure blob storage as storage backend
Merge in RED/redaction-service from RED-2172 to master

* commit 'e22e454fb5c16b326183179193bf24a8e7d724be':
  RED-2172: Enbled to configure azure blob storage as storage backend
2021-10-06 15:13:09 +02:00
Dominique Eifländer e22e454fb5 RED-2172: Enbled to configure azure blob storage as storage backend 2021-10-06 15:02:44 +02:00
Ali Oezyetimoglu 4316f36484 Pull request #241: RED-2261 rs7
Merge in RED/redaction-service from RED-2261-rs7 to master

* commit '22ae1ad6a98a0db4383e545c931d41111d0463ed':
  RED-2261: update dependencies
  RED-2261: update dependencies
2021-10-04 16:47:17 +02:00
aoezyetimoglu 22ae1ad6a9 RED-2261: update dependencies 2021-10-01 15:31:39 +02:00
aoezyetimoglu e7fc3f8079 RED-2261: update dependencies 2021-10-01 14:56:19 +02:00
Ali Oezyetimoglu 8f54adc8e6 Pull request #239: RED-2261: update dependencies
Merge in RED/redaction-service from RED-2261-rs5 to master

* commit '94622a90f373248ed0c10d7c6d7fddbee65c3028':
  RED-2261: update dependencies
2021-10-01 13:18:53 +02:00
aoezyetimoglu 94622a90f3 RED-2261: update dependencies 2021-10-01 10:59:37 +02:00
Ali Oezyetimoglu 58383467bb Pull request #238: RED-2261: update dependencies
Merge in RED/redaction-service from RED-2261-rs4 to master

* commit '8f31abf8dc9817be3a9a110eefd33ee919ae5313':
  RED-2261: update dependencies
2021-09-30 17:00:57 +02:00
aoezyetimoglu 8f31abf8dc RED-2261: update dependencies 2021-09-30 16:54:28 +02:00
Ali Oezyetimoglu 71e698da9d Pull request #237: RED-2261 rs3
Merge in RED/redaction-service from RED-2261-rs3 to master

* commit 'f3b6a2e57e00fc3892370408f6ba0a70b20791a1':
  RED-2261: update dependencies
  RED-2261: update dependencies
2021-09-30 16:51:41 +02:00
aoezyetimoglu f3b6a2e57e RED-2261: update dependencies 2021-09-30 16:41:35 +02:00
aoezyetimoglu a058bb996b RED-2261: update dependencies 2021-09-30 16:00:35 +02:00
Ali Oezyetimoglu 8633b02f4e Pull request #233: RED-2272: Make sure publicly writable directories are used safely && regex upper bound
Merge in RED/redaction-service from RED-2272-rs1 to master

* commit 'c4e47a48f8973ca1bbd602727a205647deb809fe':
  RED-2272: Make sure publicly writable directories are used safely && regex upper bound
  RED-2272: Make sure publicly writable directories are used safely && regex upper bound
2021-09-30 12:45:46 +02:00
aoezyetimoglu c4e47a48f8 RED-2272: Make sure publicly writable directories are used safely && regex upper bound 2021-09-30 12:37:01 +02:00
aoezyetimoglu adba0f99a0 RED-2272: Make sure publicly writable directories are used safely && regex upper bound 2021-09-30 11:51:48 +02:00
Timo Bejan 10ae7fc20d Pull request #232: typeId to type internal refactor
Merge in RED/redaction-service from persistence-service-integration to master

* commit 'dcd6d9d2c9cb66ad55e08d82a6044ea1b01c54eb':
  fixed pmd
  typeId to type internal refactor
2021-09-29 15:57:45 +02:00
Timo Bejan dcd6d9d2c9 fixed pmd 2021-09-29 16:52:06 +03:00
Timo Bejan 0856c542bc typeId to type internal refactor 2021-09-29 16:34:04 +03:00
Dominique Eiflaender dd8a07d2ad Pull request #231: Fixed update dictionary request
Merge in RED/redaction-service from UpdateDictionaryFix to master

* commit 'ded1b6eb66bd179589cb6191f748e39ea834a7a6':
  Fixed update dictionary request
2021-09-29 09:49:45 +02:00
47 changed files with 749 additions and 287 deletions
+1 -1
View File
@@ -5,7 +5,7 @@
<parent>
<groupId>com.atlassian.bamboo</groupId>
<artifactId>bamboo-specs-parent</artifactId>
<version>7.2.2</version>
<version>8.0.3</version>
<relativePath/>
</parent>
@@ -1,5 +1,8 @@
package buildjob;
import java.time.DayOfWeek;
import java.time.LocalTime;
import com.atlassian.bamboo.specs.api.BambooSpec;
import com.atlassian.bamboo.specs.api.builders.BambooKey;
import com.atlassian.bamboo.specs.api.builders.docker.DockerConfiguration;
@@ -19,6 +22,8 @@ import com.atlassian.bamboo.specs.builders.task.ScriptTask;
import com.atlassian.bamboo.specs.builders.task.VcsCheckoutTask;
import com.atlassian.bamboo.specs.builders.task.VcsTagTask;
import com.atlassian.bamboo.specs.builders.trigger.BitbucketServerTrigger;
import com.atlassian.bamboo.specs.builders.trigger.RepositoryPollingTrigger;
import com.atlassian.bamboo.specs.builders.trigger.ScheduledTrigger;
import com.atlassian.bamboo.specs.model.task.InjectVariablesScope;
import com.atlassian.bamboo.specs.util.BambooServer;
import com.atlassian.bamboo.specs.builders.task.ScriptTask;
@@ -50,6 +55,11 @@ public class PlanSpec {
bambooServer.publish(plan);
PlanPermissions planPermission = new PlanSpec().createPlanPermission(plan.getIdentifier());
bambooServer.publish(planPermission);
Plan secPlan = new PlanSpec().createSecBuild();
bambooServer.publish(secPlan);
PlanPermissions secPlanPermission = new PlanSpec().createPlanPermission(secPlan.getIdentifier());
bambooServer.publish(secPlanPermission);
}
private PlanPermissions createPlanPermission(PlanIdentifier planIdentifier) {
@@ -94,11 +104,6 @@ public class PlanSpec {
.description("Resultparser")
.resultDirectories("**/test-reports/*.xml, **/target/surefire-reports/*.xml, **/target/failsafe-reports/*.xml")
.enabled(true),
new ScriptTask()
.description("Sonar")
.location(Location.FILE)
.fileFromPath("bamboo-specs/src/main/resources/scripts/sonar-java.sh")
.argument(SERVICE_NAME),
new InjectVariablesTask()
.description("Inject git Tag")
.path("git.tag")
@@ -125,4 +130,45 @@ public class PlanSpec {
.whenInactiveInRepositoryAfterDays(14))
.notificationForCommitters());
}
public Plan createSecBuild() {
return new Plan(
project(),
SERVICE_NAME + "-Sec", new BambooKey(SERVICE_KEY + "SEC"))
.description("Security Analysis Plan")
.stages(new Stage("Default Stage")
.jobs(new Job("Default Job",
new BambooKey("JOB1"))
.tasks(
new ScriptTask()
.description("Clean")
.inlineBody("#!/bin/bash\n" +
"set -e\n" +
"rm -rf ./*"),
new VcsCheckoutTask()
.description("Checkout Default Repository")
.checkoutItems(new CheckoutItem().defaultRepository()),
new ScriptTask()
.description("Sonar")
.location(Location.FILE)
.fileFromPath("bamboo-specs/src/main/resources/scripts/sonar-java.sh")
.argument(SERVICE_NAME))
.dockerConfiguration(
new DockerConfiguration()
.image("nexus.iqser.com:5001/infra/maven:3.6.2-jdk-13-3.0.0")
.dockerRunArguments("--net=host")
.volume("/etc/maven/settings.xml", "/usr/share/maven/ref/settings.xml")
.volume("/var/run/docker.sock", "/var/run/docker.sock")
)
)
)
.linkedRepositories("RED / " + SERVICE_NAME)
.triggers(
new ScheduledTrigger()
.scheduleOnceDaily(LocalTime.of(12, 00)),
new BitbucketServerTrigger())
.planBranchManagement(new PlanBranchManagement()
.createForVcsBranchMatching("release.*")
.notificationForCommitters());
}
}
@@ -11,7 +11,9 @@ public class PlanSpecTest {
@Test
public void checkYourPlanOffline() throws PropertiesValidationException {
Plan plan = new PlanSpec().createPlan();
EntityPropertiesBuilders.build(plan);
Plan secPlan = new PlanSpec().createSecBuild();
EntityPropertiesBuilders.build(secPlan);
}
}
+1 -1
View File
@@ -5,7 +5,7 @@
<parent>
<groupId>com.iqser.red</groupId>
<artifactId>platform-docker-dependency</artifactId>
<version>1.0.0</version>
<version>1.1.0</version>
</parent>
<modelVersion>4.0.0</modelVersion>
@@ -13,6 +13,6 @@ RUN apt-get update \
wget cabextract xfonts-utils fonts-liberation \
&& rm -rf /var/lib/apt/lists/*
RUN curl http://ftp.br.debian.org/debian/pool/contrib/m/msttcorefonts/ttf-mscorefonts-installer_3.8_all.deb -o /tmp/ttf-mscorefonts-installer_3.8_all.deb \
RUN curl http://ftp.debian.org/debian/pool/contrib/m/msttcorefonts/ttf-mscorefonts-installer_3.8_all.deb -o /tmp/ttf-mscorefonts-installer_3.8_all.deb \
&& dpkg -i /tmp/ttf-mscorefonts-installer_3.8_all.deb \
&& rm /tmp/ttf-mscorefonts-installer_3.8_all.deb \
+3 -4
View File
@@ -5,7 +5,7 @@
<parent>
<artifactId>platform-dependency</artifactId>
<groupId>com.iqser.red</groupId>
<version>1.1.3</version>
<version>1.1.5</version>
</parent>
<modelVersion>4.0.0</modelVersion>
@@ -13,7 +13,6 @@
<groupId>com.iqser.red.service</groupId>
<version>1.0-SNAPSHOT</version>
<packaging>pom</packaging>
<modules>
@@ -22,7 +21,7 @@
</modules>
<properties>
<pdfbox.version>2.0.21</pdfbox.version>
<pdfbox.version>2.0.24</pdfbox.version>
</properties>
@@ -32,7 +31,7 @@
<dependency>
<groupId>com.iqser.red</groupId>
<artifactId>platform-commons-dependency</artifactId>
<version>1.3.6</version>
<version>1.7.0</version>
<scope>import</scope>
<type>pom</type>
</dependency>
@@ -11,6 +11,10 @@
<artifactId>redaction-service-api-v1</artifactId>
<properties>
<persistence-service.version>0.103.0</persistence-service.version>
</properties>
<dependencies>
<dependency>
<groupId>org.springframework</groupId>
@@ -20,7 +24,7 @@
<dependency>
<groupId>com.iqser.red.service</groupId>
<artifactId>persistence-service-api-v1</artifactId>
<version>0.16.0</version>
<version>${persistence-service.version}</version>
</dependency>
</dependencies>
</project>
@@ -1,5 +1,7 @@
package com.iqser.red.service.redaction.v1.model;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactions;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
@@ -14,4 +16,5 @@ public class AnnotateRequest {
private String dossierId;
private String dossierTemplateId;
private String fileId;
private ManualRedactions manualRedactions;
}
@@ -1,5 +1,5 @@
package com.iqser.red.service.redaction.v1.model;
public enum ManualRedactionType {
ADD, REMOVE, FORCE_REDACT, RECATEGORIZE, LEGAL_BASIS_CHANGE
ADD, REMOVE, FORCE_REDACT, RECATEGORIZE, LEGAL_BASIS_CHANGE, RESIZE
}
@@ -22,7 +22,7 @@ import java.util.Set;
public class RedactionLogEntry {
private String id;
private String typeId;
private String type;
private String value;
private String reason;
private int matchedRule;
@@ -30,6 +30,13 @@ public class RedactionLogEntry {
private boolean redacted;
private boolean isHint;
private boolean isRecommendation;
private boolean hasBeenResized;
private boolean hasBeenRecategorized;
private boolean hasLegalBasisChanged;
private boolean hasBeenForced;
private boolean hasBeenRemovedByManualOverride;
private String section;
private float[] color;
@@ -3,10 +3,9 @@ package com.iqser.red.service.redaction.v1.model;
import lombok.AllArgsConstructor;
import lombok.Data;
import lombok.NoArgsConstructor;
import lombok.RequiredArgsConstructor;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.*;
@Data
@AllArgsConstructor
@@ -15,4 +14,16 @@ public class SectionGrid {
private Map<Integer, List<SectionRectangle>> rectanglesPerPage = new HashMap<>();
private List<SectionGridSection> sections = new ArrayList<>();
@Data
@RequiredArgsConstructor
public static class SectionGridSection {
private final int sectionNumber;
private final String headline;
private final Set<Integer> pages;
private final List<SectionArea> sectionAreas;
}
}
@@ -11,6 +11,14 @@
<artifactId>redaction-service-server-v1</artifactId>
<properties>
<drools.version>7.59.0.Final</drools.version>
<kie.version>7.59.0.Final</kie.version>
<locationtech.version>1.16.1</locationtech.version>
<pdfbox.jbig2-imageio.version>3.0.3</pdfbox.jbig2-imageio.version>
<jai-imageio.version>1.4.0</jai-imageio.version>
</properties>
<dependencies>
<dependency>
<groupId>com.iqser.red.commons</groupId>
@@ -24,38 +32,37 @@
<dependency>
<groupId>org.drools</groupId>
<artifactId>drools-core</artifactId>
<version>7.37.0.Final</version>
<version>${drools.version}</version>
</dependency>
<dependency>
<groupId>org.kie</groupId>
<artifactId>kie-spring</artifactId>
<version>7.37.0.Final</version>
<version>${kie.version}</version>
</dependency>
<dependency>
<groupId>org.locationtech.jts</groupId>
<artifactId>jts-core</artifactId>
<version>1.16.1</version>
<version>${locationtech.version}</version>
</dependency>
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
<version>29.0-jre</version>
</dependency>
<dependency>
<groupId>org.apache.pdfbox</groupId>
<artifactId>jbig2-imageio</artifactId>
<version>3.0.3</version>
<version>${pdfbox.jbig2-imageio.version}</version>
</dependency>
<dependency>
<groupId>com.github.jai-imageio</groupId>
<artifactId>jai-imageio-core</artifactId>
<version>1.4.0</version>
<version>${jai-imageio.version}</version>
</dependency>
<dependency>
<groupId>com.github.jai-imageio</groupId>
<artifactId>jai-imageio-jpeg2000</artifactId>
<version>1.4.0</version>
<version>${jai-imageio.version}</version>
</dependency>
<!-- commons -->
@@ -72,10 +79,6 @@
<artifactId>metric-commons</artifactId>
</dependency>
<!-- other external -->
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-lang3</artifactId>
</dependency>
<dependency>
<groupId>org.apache.pdfbox</groupId>
<artifactId>pdfbox</artifactId>
@@ -93,7 +96,6 @@
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-amqp</artifactId>
<version>2.3.1.RELEASE</version>
</dependency>
<!-- test dependencies -->
@@ -107,12 +109,6 @@
<artifactId>test-commons</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.springframework.amqp</groupId>
<artifactId>spring-rabbit-test</artifactId>
<version>2.3.1</version>
<scope>test</scope>
</dependency>
</dependencies>
<build>
@@ -1,5 +1,7 @@
package com.iqser.red.service.redaction.v1.server.classification.service;
import static java.util.stream.Collectors.toSet;
import com.iqser.red.service.redaction.v1.server.classification.model.FloatFrequencyCounter;
import com.iqser.red.service.redaction.v1.server.classification.model.Orientation;
import com.iqser.red.service.redaction.v1.server.classification.model.Page;
@@ -16,6 +18,7 @@ import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
import org.springframework.stereotype.Service;
import java.util.ArrayList;
import java.util.Comparator;
import java.util.Iterator;
import java.util.List;
@@ -25,9 +28,12 @@ public class BlockificationService {
static final float THRESHOLD = 1f;
public Page blockify(List<TextPositionSequence> textPositions, List<Ruling> horizontalRulingLines,
List<Ruling> verticalRulingLines) {
sortRotatedSequences(textPositions);
List<TextPositionSequence> chunkWords = new ArrayList<>();
List<AbstractTextContainer> chunkBlockList1 = new ArrayList<>();
@@ -50,7 +56,7 @@ public class BlockificationService {
if (prev != null && (lineSeparation || startFromTop || splitByX || newLineAfterSplit || splittedByRuling)) {
Orientation prevOrientation = null;
if(!chunkBlockList1.isEmpty()) {
if (!chunkBlockList1.isEmpty()) {
prevOrientation = chunkBlockList1.get(chunkBlockList1.size() - 1).getOrientation();
}
@@ -62,15 +68,11 @@ public class BlockificationService {
wasSplitted = true;
cb1.setOrientation(Orientation.LEFT);
splitX1 = word.getX1();
} else
if (newLineAfterSplit && !splittedByRuling) {
} else if (newLineAfterSplit && !splittedByRuling) {
wasSplitted = false;
cb1.setOrientation(Orientation.RIGHT);
splitX1 = null;
} else
if(prevOrientation != null && prevOrientation.equals(Orientation.RIGHT) && (lineSeparation || !startFromTop || !splitByX || !newLineAfterSplit || !splittedByRuling)){
} else if (prevOrientation != null && prevOrientation.equals(Orientation.RIGHT) && (lineSeparation || !startFromTop || !splitByX || !newLineAfterSplit || !splittedByRuling)) {
cb1.setOrientation(Orientation.LEFT);
}
@@ -110,16 +112,18 @@ public class BlockificationService {
while (itty.hasNext()) {
TextBlock block = (TextBlock) itty.next();
if(previousLeft != null && block.getOrientation().equals(Orientation.LEFT)){
if (previousLeft.getMinY() > block.getMinY() && block.getMaxY() + block.getMostPopularWordHeight() > previousLeft.getMinY()){
if (previousLeft != null && block.getOrientation().equals(Orientation.LEFT)) {
if (previousLeft.getMinY() > block.getMinY() && block.getMaxY() + block.getMostPopularWordHeight() > previousLeft
.getMinY()) {
previousLeft.add(block);
itty.remove();
continue;
}
}
if(previousRight != null && block.getOrientation().equals(Orientation.RIGHT)){
if (previousRight.getMinY() > block.getMinY() && block.getMaxY() + block.getMostPopularWordHeight() > previousRight.getMinY()){
if (previousRight != null && block.getOrientation().equals(Orientation.RIGHT)) {
if (previousRight.getMinY() > block.getMinY() && block.getMaxY() + block.getMostPopularWordHeight() > previousRight
.getMinY()) {
previousRight.add(block);
itty.remove();
continue;
@@ -133,16 +137,16 @@ public class BlockificationService {
}
}
itty = chunkBlockList1.iterator();
TextBlock previous = null;
while (itty.hasNext()) {
TextBlock block = (TextBlock) itty.next();
if(previous != null && previous.getOrientation().equals(Orientation.LEFT) && block.getOrientation().equals(Orientation.LEFT) && equalsWithThreshold(block.getMaxY(), previous
.getMaxY())||
previous != null && previous.getOrientation().equals(Orientation.LEFT) && block.getOrientation().equals(Orientation.RIGHT) && equalsWithThreshold(block.getMaxY(), previous
.getMaxY())){
if (previous != null && previous.getOrientation().equals(Orientation.LEFT) && block.getOrientation()
.equals(Orientation.LEFT) && equalsWithThreshold(block.getMaxY(), previous.getMaxY()) || previous != null && previous
.getOrientation()
.equals(Orientation.LEFT) && block.getOrientation()
.equals(Orientation.RIGHT) && equalsWithThreshold(block.getMaxY(), previous.getMaxY())) {
previous.add(block);
itty.remove();
continue;
@@ -151,11 +155,12 @@ public class BlockificationService {
previous = block;
}
return new Page(chunkBlockList1);
}
private boolean equalsWithThreshold(float f1, float f2){
private boolean equalsWithThreshold(float f1, float f2) {
return Math.abs(f1 - f2) < THRESHOLD;
}
@@ -197,6 +202,13 @@ public class BlockificationService {
textBlock.setHighestFontSize(fontSizeFrequencyCounter.getHighest());
}
if (textBlock != null && textBlock.getSequences() != null && textBlock.getSequences()
.stream()
.map(t -> round(t.getY1(), 3))
.collect(toSet())
.size() == 1) {
textBlock.getSequences().sort(Comparator.comparing(TextPositionSequence::getX1));
}
return textBlock;
}
@@ -291,4 +303,30 @@ public class BlockificationService {
return new Rectangle(minY, minX, maxX - minX, maxY - minY);
}
private void sortRotatedSequences(List<TextPositionSequence> sequences) {
List<TextPositionSequence> rotatedWords = new ArrayList<>();
Iterator<TextPositionSequence> itty = sequences.iterator();
while (itty.hasNext()) {
var pos = itty.next();
if (pos.getTextPositions().get(0).getDir() == 270) {
rotatedWords.add(pos);
itty.remove();
}
}
if (!rotatedWords.isEmpty() && !sequences.isEmpty()) {
rotatedWords.sort(Comparator.comparing(TextPositionSequence::getX1));
}
sequences.addAll(rotatedWords);
}
private double round(float value, int decimalPoints) {
var d = Math.pow(10, decimalPoints);
return Math.round(value * d) / d;
}
}
@@ -73,8 +73,10 @@ public class ClassificationService {
}
} else if (PositionUtils.isWithinBodyTextFrame(bodyTextFrame, textBlock) && textBlock.getMostPopularWordFontSize() > document
.getFontSizeCounter()
.getMostPopular() && PositionUtils.getApproxLineCount(textBlock) < 4.9 && textBlock.getMostPopularWordStyle()
.equals("bold")) {
.getMostPopular() && PositionUtils.getApproxLineCount(textBlock) < 4.9 && (textBlock.getMostPopularWordStyle()
.equals("bold") || !document.getFontStyleCounter().getCountPerValue().containsKey("bold") && textBlock.getMostPopularWordFontSize() > document
.getFontSizeCounter()
.getMostPopular() + 1) && textBlock.getSequences().get(0).getTextPositions().get(0).getFontSizeInPt() >= textBlock.getMostPopularWordFontSize()) {
for (int i = 1; i <= headlineFontSizes.size(); i++) {
if (textBlock.getMostPopularWordFontSize() == headlineFontSizes.get(i - 1)) {
@@ -86,7 +88,7 @@ public class ClassificationService {
.startsWith("Figure ") && PositionUtils.isWithinBodyTextFrame(bodyTextFrame, textBlock) && textBlock.getMostPopularWordStyle()
.equals("bold") && !document.getFontStyleCounter()
.getMostPopular()
.equals("bold") && PositionUtils.getApproxLineCount(textBlock) < 2.9) {
.equals("bold") && PositionUtils.getApproxLineCount(textBlock) < 2.9 && textBlock.getSequences().get(0).getTextPositions().get(0).getFontSizeInPt() >= textBlock.getMostPopularWordFontSize()) {
textBlock.setClassification("H " + (headlineFontSizes.size() + 1));
document.setHeadlines(true);
} else if (PositionUtils.isWithinBodyTextFrame(bodyTextFrame, textBlock) && textBlock.getMostPopularWordFontSize() == document
@@ -1,6 +1,7 @@
package com.iqser.red.service.redaction.v1.server.controller;
import com.iqser.red.commons.spring.ErrorMessage;
import com.iqser.red.service.redaction.v1.server.exception.NotFoundException;
import com.iqser.red.service.redaction.v1.server.exception.RulesValidationException;
import lombok.extern.slf4j.Slf4j;
import org.springframework.http.HttpStatus;
@@ -36,4 +37,11 @@ public class ControllerAdvice {
return new ErrorMessage(OffsetDateTime.now(), e.getMessage());
}
@ResponseBody
@ResponseStatus(value = HttpStatus.NOT_FOUND)
@ExceptionHandler(value = NotFoundException.class)
public ErrorMessage handleFileNotFoundException(NotFoundException e) {
return new ErrorMessage(OffsetDateTime.now(), e.getMessage());
}
}
@@ -5,6 +5,7 @@ import com.iqser.red.service.redaction.v1.model.*;
import com.iqser.red.service.redaction.v1.resources.RedactionResource;
import com.iqser.red.service.redaction.v1.server.classification.model.Document;
import com.iqser.red.service.redaction.v1.server.classification.model.Page;
import com.iqser.red.service.redaction.v1.server.exception.NotFoundException;
import com.iqser.red.service.redaction.v1.server.exception.RedactionException;
import com.iqser.red.service.redaction.v1.server.redaction.service.AnnotationService;
import com.iqser.red.service.redaction.v1.server.redaction.service.DictionaryService;
@@ -24,6 +25,7 @@ import org.springframework.web.bind.annotation.RestController;
import java.io.ByteArrayOutputStream;
import java.io.IOException;
import java.util.stream.Collectors;
@Slf4j
@RestController
@@ -41,14 +43,14 @@ public class RedactionController implements RedactionResource {
public AnnotateResponse annotate(@RequestBody AnnotateRequest annotateRequest) {
var storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(annotateRequest.getDossierId(), annotateRequest.getFileId(), FileType.ORIGIN));
var redactionLog = redactionStorageService.getRedactionLog(annotateRequest.getDossierId(), annotateRequest.getFileId());
var mergedRedactionLog = getRedactionLog(RedactionRequest.builder().fileId(annotateRequest.getFileId()).manualRedactions(annotateRequest.getManualRedactions()).dossierId(annotateRequest.getDossierId()).dossierTemplateId(annotateRequest.getDossierTemplateId()).build());
var sectionsGrid = redactionStorageService.getSectionGrid(annotateRequest.getDossierId(), annotateRequest.getFileId());
try (PDDocument pdDocument = PDDocument.load(storedObjectStream, MemoryUsageSetting.setupTempFileOnly())) {
pdDocument.setAllSecurityToBeRemoved(true);
dictionaryService.updateDictionary(annotateRequest.getDossierTemplateId(), annotateRequest.getDossierId());
annotationService.annotate(pdDocument, redactionLog, sectionsGrid);
annotationService.annotate(pdDocument, mergedRedactionLog, sectionsGrid);
try (ByteArrayOutputStream byteArrayOutputStream = new ByteArrayOutputStream()) {
pdDocument.save(byteArrayOutputStream);
@@ -152,12 +154,35 @@ public class RedactionController implements RedactionResource {
var redactionLog = redactionStorageService.getRedactionLog(redactionRequest.getDossierId(), redactionRequest.getFileId());
if (redactionLog == null) {
throw new NotFoundException("RedactionLog not present");
}
log.info("Loaded redaction log with computationalVersion: {}", redactionLog.getAnalysisVersion());
SectionGrid sectionGrid = redactionStorageService.getSectionGrid(redactionRequest.getDossierId(), redactionRequest.getFileId());
if (sectionGrid.getSections().isEmpty()) {
log.info("SectionGrid does not have headlines set. Computing headlines now!");
var text = redactionStorageService.getText(redactionRequest.getDossierId(), redactionRequest.getFileId());
// enhance section grid with headline data
for (var sectionText : text.getSectionTexts()) {
sectionGrid.getSections().add(new SectionGrid.SectionGridSection(sectionText.getSectionNumber(),
sectionText.getHeadline(),
sectionText.getSectionAreas().stream().map(SectionArea::getPage).collect(Collectors.toSet()),
sectionText.getSectionAreas()));
}
redactionStorageService.storeObject(redactionRequest.getDossierId(), redactionRequest.getFileId(), FileType.SECTION_GRID, sectionGrid);
}
log.info("Loaded redaction log with computationalVersion: {}", redactionLog.getAnalysisVersion());
if (redactionLog.getAnalysisVersion() == 0) {
// old redaction logs are returned directly
return redactionLog;
} else {
return redactionLogMergeService.mergeRedactionLogData(redactionLog, redactionRequest.getDossierTemplateId(), redactionRequest.getManualRedactions(), redactionRequest.getExcludedPages());
return redactionLogMergeService.mergeRedactionLogData(redactionLog, sectionGrid, redactionRequest.getDossierTemplateId(), redactionRequest.getManualRedactions(), redactionRequest.getExcludedPages());
}
}
@@ -0,0 +1,9 @@
package com.iqser.red.service.redaction.v1.server.exception;
public class NotFoundException extends RuntimeException {
public NotFoundException(String message) {
super(message);
}
}
@@ -1,16 +1,33 @@
package com.iqser.red.service.redaction.v1.server.parsing;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.model.PdfImage;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Ruling;
import lombok.Getter;
import lombok.Setter;
import lombok.extern.slf4j.Slf4j;
import java.awt.geom.Point2D;
import java.awt.geom.Rectangle2D;
import java.io.IOException;
import java.util.ArrayList;
import java.util.List;
import org.apache.commons.lang3.reflect.FieldUtils;
import org.apache.pdfbox.contentstream.operator.Operator;
import org.apache.pdfbox.contentstream.operator.OperatorName;
import org.apache.pdfbox.contentstream.operator.color.*;
import org.apache.pdfbox.contentstream.operator.state.*;
import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingColor;
import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingColorN;
import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingColorSpace;
import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingDeviceCMYKColor;
import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingDeviceGrayColor;
import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingDeviceRGBColor;
import org.apache.pdfbox.contentstream.operator.color.SetStrokingColor;
import org.apache.pdfbox.contentstream.operator.color.SetStrokingColorN;
import org.apache.pdfbox.contentstream.operator.color.SetStrokingColorSpace;
import org.apache.pdfbox.contentstream.operator.color.SetStrokingDeviceCMYKColor;
import org.apache.pdfbox.contentstream.operator.color.SetStrokingDeviceGrayColor;
import org.apache.pdfbox.contentstream.operator.color.SetStrokingDeviceRGBColor;
import org.apache.pdfbox.contentstream.operator.state.SetFlatness;
import org.apache.pdfbox.contentstream.operator.state.SetLineCapStyle;
import org.apache.pdfbox.contentstream.operator.state.SetLineDashPattern;
import org.apache.pdfbox.contentstream.operator.state.SetLineJoinStyle;
import org.apache.pdfbox.contentstream.operator.state.SetLineMiterLimit;
import org.apache.pdfbox.contentstream.operator.state.SetLineWidth;
import org.apache.pdfbox.contentstream.operator.state.SetRenderingIntent;
import org.apache.pdfbox.contentstream.operator.text.SetFontAndSize;
import org.apache.pdfbox.cos.COSBase;
import org.apache.pdfbox.cos.COSName;
@@ -23,12 +40,14 @@ import org.apache.pdfbox.text.PDFTextStripper;
import org.apache.pdfbox.text.TextPosition;
import org.apache.pdfbox.util.Matrix;
import java.awt.geom.AffineTransform;
import java.awt.geom.Point2D;
import java.awt.geom.Rectangle2D;
import java.io.IOException;
import java.util.ArrayList;
import java.util.List;
import com.iqser.red.service.redaction.v1.server.parsing.model.RedTextPosition;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.model.PdfImage;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Ruling;
import lombok.Getter;
import lombok.Setter;
import lombok.extern.slf4j.Slf4j;
@Slf4j
public class PDFLinesTextStripper extends PDFTextStripper {
@@ -189,16 +208,19 @@ public class PDFLinesTextStripper extends PDFTextStripper {
COSName objectName = (COSName) arguments.get(0);
PDXObject xobject = getResources().getXObject(objectName);
if (xobject instanceof PDImageXObject) {
PDImageXObject image = (PDImageXObject)xobject;
PDImageXObject image = (PDImageXObject) xobject;
Matrix ctmNew = getGraphicsState().getCurrentTransformationMatrix();
Rectangle2D rect = new Rectangle2D.Float(ctmNew.getTranslateX(), ctmNew.getTranslateY(), ctmNew.getScaleX(), ctmNew.getScaleY());
Rectangle2D rect = new Rectangle2D.Float(ctmNew.getTranslateX(), ctmNew.getTranslateY(), ctmNew.getScaleX(), ctmNew
.getScaleY());
// Memory Hack - sofReference kills me
FieldUtils.writeField(image, "cachedImageSubsampling", -1, true);
if (rect.getHeight() > 2 && rect.getWidth() > 2) {
this.images.add(new PdfImage(image.getImage(), rect, pageNumber, image.getImage().getColorModel().hasAlpha()));
this.images.add(new PdfImage(image.getImage(), rect, pageNumber, image.getImage()
.getColorModel()
.hasAlpha()));
}
}
} catch (Exception e) {
@@ -207,8 +229,6 @@ public class PDFLinesTextStripper extends PDFTextStripper {
}
private float floatValue(COSBase value) {
if (value instanceof COSNumber) {
@@ -247,8 +267,16 @@ public class PDFLinesTextStripper extends PDFTextStripper {
public void writeString(String text, List<TextPosition> textPositions) throws IOException {
int startIndex = 0;
RedTextPosition previous = null;
for (int i = 0; i <= textPositions.size() - 1; i++) {
if (!textPositionSequences.isEmpty()) {
previous = textPositionSequences.get(textPositionSequences.size() - 1)
.getTextPositions()
.get(textPositionSequences.get(textPositionSequences.size() - 1).getTextPositions().size() - 1);
}
int charWidth = (int) textPositions.get(i).getWidthDirAdj();
if (charWidth < minCharWidth) {
minCharWidth = charWidth;
@@ -267,42 +295,54 @@ public class PDFLinesTextStripper extends PDFTextStripper {
if (i == 0 && (textPositions.get(i).getUnicode().equals(" ") || textPositions.get(i)
.getUnicode()
.equals("\u00A0"))) {
.equals("\u00A0") || textPositions.get(i)
.getUnicode()
.equals("\t"))) {
startIndex++;
continue;
}
// Strange but sometimes this is happening, for example: Metolachlor2.pdf
if (i > 0 && textPositions.get(i).getX() < textPositions.get(i - 1).getX()) {
if (i > 0 && textPositions.get(i).getXDirAdj() < textPositions.get(i - 1).getXDirAdj()) {
List<TextPosition> sublist = textPositions.subList(startIndex, i);
if (!(sublist.isEmpty() || sublist.size() == 1 && (sublist.get(0)
.getUnicode()
.equals(" ") || sublist.get(0).getUnicode().equals("\u00A0")))) {
.equals(" ") || sublist.get(0).getUnicode().equals("\u00A0") || sublist.get(0).getUnicode().equals("\t")))) {
textPositionSequences.add(new TextPositionSequence(sublist, pageNumber));
}
startIndex = i;
}
if (textPositions.get(i).getRotation() == 0 && i > 0 && textPositions.get(i).getX() > textPositions.get(i - 1).getEndX() + 1) {
if (textPositions.get(i).getRotation() == 0 && i > 0 && textPositions.get(i)
.getX() > textPositions.get(i - 1).getEndX() + 1) {
List<TextPosition> sublist = textPositions.subList(startIndex, i);
if (!(sublist.isEmpty() || sublist.size() == 1 && (sublist.get(0)
.getUnicode()
.equals(" ") || sublist.get(0).getUnicode().equals("\u00A0")))) {
.equals(" ") || sublist.get(0).getUnicode().equals("\u00A0") || sublist.get(0).getUnicode().equals("\t")))) {
textPositionSequences.add(new TextPositionSequence(sublist, pageNumber));
}
startIndex = i;
}
if (i > 0 && (textPositions.get(i).getUnicode().equals(" ") || textPositions.get(i)
.getUnicode()
.equals("\u00A0")) && i <= textPositions.size() - 2) {
.equals("\u00A0") || textPositions.get(i)
.getUnicode()
.equals("\t")) && i <= textPositions.size() - 2) {
List<TextPosition> sublist = textPositions.subList(startIndex, i);
if (!(sublist.isEmpty() || sublist.size() == 1 && (sublist.get(0)
.getUnicode()
.equals(" ") || sublist.get(0).getUnicode().equals("\u00A0")))) {
textPositionSequences.add(new TextPositionSequence(sublist, pageNumber));
.equals(" ") || sublist.get(0).getUnicode().equals("\u00A0") || sublist.get(0).getUnicode().equals("\t")))) {
// Remove false sequence ends (whitespaces)
if (previous != null && sublist.get(0).getYDirAdj() == previous.getYDirAdj() && sublist.get(0)
.getXDirAdj() - (previous.getXDirAdj() + previous.getWidthDirAdj()) < 0.01) {
for (TextPosition t : sublist) {
textPositionSequences.get(textPositionSequences.size() - 1).add(t);
}
} else {
textPositionSequences.add(new TextPositionSequence(sublist, pageNumber));
}
}
startIndex = i + 1;
}
@@ -311,13 +351,23 @@ public class PDFLinesTextStripper extends PDFTextStripper {
List<TextPosition> sublist = textPositions.subList(startIndex, textPositions.size());
if (!sublist.isEmpty() && (sublist.get(sublist.size() - 1)
.getUnicode()
.equals(" ") || sublist.get(sublist.size() - 1).getUnicode().equals("\u00A0"))) {
.equals(" ") || sublist.get(sublist.size() - 1).getUnicode().equals("\u00A0") || sublist.get(sublist.size() - 1).getUnicode().equals("\t"))) {
sublist = sublist.subList(0, sublist.size() - 1);
}
if (!(sublist.isEmpty() || sublist.size() == 1 && (sublist.get(0).getUnicode().equals(" ") || sublist.get(0)
.getUnicode()
.equals("\u00A0")))) {
textPositionSequences.add(new TextPositionSequence(sublist, pageNumber));
.equals("\u00A0") || sublist.get(0)
.getUnicode()
.equals("\t")))) {
if (previous != null && sublist.get(0).getYDirAdj() == previous.getYDirAdj() && sublist.get(0)
.getXDirAdj() - (previous.getXDirAdj() + previous.getWidthDirAdj()) < 0.01) {
for (TextPosition t : sublist) {
textPositionSequences.get(textPositionSequences.size() - 1).add(t);
}
} else {
textPositionSequences.add(new TextPositionSequence(sublist, pageNumber));
}
}
super.writeString(text);
}
@@ -21,6 +21,8 @@ public class RedTextPosition {
private float YDirAdj;
private float width;
private float heightDir;
private float widthDirAdj;
private float dir;
// not used in reanalysis
@JsonIgnore
@@ -1,5 +1,7 @@
package com.iqser.red.service.redaction.v1.server.parsing.model;
import static java.util.stream.Collectors.toSet;
import com.fasterxml.jackson.annotation.JsonIgnore;
import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
import com.iqser.red.service.redaction.v1.model.Point;
@@ -136,6 +138,13 @@ public class TextPositionSequence implements CharSequence {
}
@JsonIgnore
public float getRotationAdjustedX() {
return textPositions.get(0).getXDirAdj();
}
@JsonIgnore
public float getY1() {
@@ -233,7 +242,7 @@ public class TextPositionSequence implements CharSequence {
float posYInit;
float posYEnd;
if (textPositions.get(0).getRotation() == 90) {
if (textPositions.get(0).getRotation() == 90 && textPositions.get(0).getDir() != 0.0f) {
posXEnd = textPositions.get(0).getYDirAdj() + 2;
posYInit = getY1();
posYEnd = textPositions.get(textPositions.size() - 1).getXDirAdj() - height + 4;
@@ -244,9 +253,31 @@ public class TextPositionSequence implements CharSequence {
posXInit = textPositions.get(0).getPageWidth() - textPositions.get(0).getYDirAdj() - 2;
posXEnd = textPositions.get(0).getPageWidth() - textPositions.get(textPositions.size() - 1)
.getYDirAdj() + height;
} else {
} else if(textPositions.get(0).getRotation() == 0 && textPositions.get(0).getDir() == 270f) {
posYInit = textPositions.get(0).getPageHeight() - getX1();
posYEnd = textPositions.get(0).getPageHeight() - getX2() - textPositions.get(0)
.getWidthDirAdj() - textPositions.get(textPositions.size() - 1).getWidthDirAdj() - 3;
posXInit = textPositions.get(0).getPageWidth() - textPositions.get(0).getYDirAdj() - 2;
posXEnd = textPositions.get(0).getPageWidth() - textPositions.get(textPositions.size() - 1)
.getYDirAdj() + height;
} else if(textPositions.get(0).getRotation() == 90 && textPositions.get(0).getDir() == 0.0f){
posXInit = textPositions.get(textPositions.size() - 1)
.getXDirAdj() + textPositions.get(textPositions.size() - 1).getHeightDir();
posXEnd = textPositions.get(0).getXDirAdj();
posYInit = textPositions.get(0).getPageHeight() - textPositions.get(0).getYDirAdj() - 2;
posYEnd = textPositions.get(0).getPageHeight() - textPositions.get(textPositions.size() - 1)
.getYDirAdj() + 2;
} else if(textPositions.get(0).getRotation() == 0 && textPositions.get(0).getDir() == 90f){
posYInit = getX1();
posYEnd = getX2() + textPositions.get(0)
.getWidthDirAdj() - textPositions.get(textPositions.size() - 1).getWidthDirAdj() - 3;
posXInit = textPositions.get(0).getYDirAdj() + 2;
posXEnd = textPositions.get(textPositions.size() - 1)
.getYDirAdj() - height;
}
else {
posXEnd = textPositions.get(textPositions.size() - 1)
.getXDirAdj() + textPositions.get(textPositions.size() - 1).getWidth() + 1;
.getXDirAdj() + textPositions.get(textPositions.size() - 1).getWidthDirAdj() + 1;
posYInit = textPositions.get(0).getPageHeight() - textPositions.get(0).getYDirAdj() - 2;
posYEnd = textPositions.get(0).getPageHeight() - textPositions.get(textPositions.size() - 1)
.getYDirAdj() + 2;
@@ -35,12 +35,11 @@ public class RedactionMessageReceiver {
public void receiveAnalyzeRequest(String in) throws JsonProcessingException {
var analyzeRequest = objectMapper.readValue(in, AnalyzeRequest.class);
log.info("Processing analyze request: {}", analyzeRequest);
log.info("Processing analyze request for file: {}", analyzeRequest.getFileId());
AnalyzeResult result;
if (analyzeRequest.isReanalyseOnlyIfPossible()) {
result = analyzeService.reanalyze(analyzeRequest);
log.info("Successfully reanalyzed dossier {} file {} took: {}", analyzeRequest.getDossierId(), analyzeRequest
.getFileId(), result.getDuration());
log.info("Successfully reanalyzed dossier {} file {} took: {}", analyzeRequest.getDossierId(), analyzeRequest.getFileId(), result.getDuration());
} else {
// TODO Seperate stucture analysis by other queue
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(analyzeRequest.getDossierId(), analyzeRequest.getFileId()));
@@ -65,13 +65,13 @@ public class Dictionary {
public boolean containsValue(String type, String value) {
return localAccessMap.containsKey(type) && localAccessMap.get(type)
.getEntries().stream().map(DictionaryEntry::getValue).collect(toSet())
.getValues(false)
.contains(value) || localAccessMap.containsKey(type) && localAccessMap.get(type)
.getLocalEntries()
.getValues(true)
.contains(value) || localAccessMap.containsKey(RECOMMENDATION_PREFIX + type) && localAccessMap.get(RECOMMENDATION_PREFIX + type)
.getEntries().stream().map(DictionaryEntry::getValue).collect(toSet())
.getValues(false)
.contains(value) || localAccessMap.containsKey(RECOMMENDATION_PREFIX + type) && localAccessMap.get(RECOMMENDATION_PREFIX + type)
.getLocalEntries()
.getValues(true)
.contains(value);
}
@@ -10,16 +10,12 @@ import java.util.stream.Stream;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.*;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.dossier.file.FileType;
import com.iqser.red.service.redaction.v1.model.*;
import com.iqser.red.service.redaction.v1.model.Rectangle;
import org.kie.api.runtime.KieContainer;
import org.springframework.stereotype.Service;
import org.springframework.web.bind.annotation.RequestBody;
import com.iqser.red.service.redaction.v1.model.AnalyzeRequest;
import com.iqser.red.service.redaction.v1.model.AnalyzeResult;
import com.iqser.red.service.redaction.v1.model.Rectangle;
import com.iqser.red.service.redaction.v1.model.RedactionLog;
import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
import com.iqser.red.service.redaction.v1.model.StructureAnalyzeRequest;
import com.iqser.red.service.redaction.v1.server.classification.model.Document;
import com.iqser.red.service.redaction.v1.server.classification.model.SectionText;
import com.iqser.red.service.redaction.v1.server.classification.model.Text;
@@ -78,7 +74,15 @@ public class AnalyzeService {
List<SectionText> sectionTexts = sectionTextBuilderService.buildSectionText(classifiedDoc);
sectionGridCreatorService.createSectionGrid(classifiedDoc, pageCount);
Text text = new Text(pageCount, sectionTexts);
Text text = new Text(pageCount,sectionTexts);
// enhance section grid with headline data
sectionTexts.forEach(sectionText -> classifiedDoc
.getSectionGrid().getSections().add(new SectionGrid.SectionGridSection(sectionText.getSectionNumber(),
sectionText.getHeadline(),
sectionText.getSectionAreas().stream().map(SectionArea::getPage).collect(Collectors.toSet()),
sectionText.getSectionAreas())));
redactionStorageService.storeObject(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), FileType.TEXT, text);
redactionStorageService.storeObject(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), FileType.SECTION_GRID, classifiedDoc
.getSectionGrid());
@@ -109,7 +113,7 @@ public class AnalyzeService {
dictionaryService.updateExternalDictionary(dictionary, analyzeRequest.getDossierTemplateId(), analyzeRequest.getDossierId());
List<RedactionLogEntry> redactionLogEntries = redactionLogCreatorService.createRedactionLog(pageEntities, text.getNumberOfPages(), analyzeRequest
.getDossierTemplateId(), analyzeRequest.getDossierId());
.getDossierTemplateId());
var legalBasis = legalBasisClient.getLegalBasisMapping(analyzeRequest.getDossierTemplateId());
var redactionLog = new RedactionLog(redactionServiceSettings.getAnalysisVersion(), redactionLogEntries, legalBasis, dictionary
@@ -162,7 +166,7 @@ public class AnalyzeService {
PageEntities pageEntities = entityRedactionService.findEntities(dictionary, reanalysisSections, kieContainer, analyzeRequest, nerEntities);
var newRedactionLogEntries = redactionLogCreatorService.createRedactionLog(pageEntities, text.getNumberOfPages(), analyzeRequest
.getDossierTemplateId(), analyzeRequest.getDossierId());
.getDossierTemplateId());
redactionLog.getRedactionLogEntry().removeIf(entry -> sectionsToReanalyse.contains(entry.getSectionNumber()));
redactionLog.getRedactionLogEntry().addAll(newRedactionLogEntries);
@@ -254,7 +258,7 @@ public class AnalyzeService {
Rectangle position = entry.getPositions().get(0);
return Image.builder()
.type(entry.getTypeId().split(":")[0])
.type(entry.getType())
.position(new RedRectangle2D(position.getTopLeft().getX(), position.getTopLeft()
.getY(), position.getWidth(), position.getHeight()))
.sectionNumber(entry.getSectionNumber())
@@ -169,12 +169,12 @@ public class AnnotationService {
private float[] toQuadPoint(Rectangle rectangle, PDRectangle mediaBox, PDRectangle cropBox) {
var x1 = rectangle.getTopLeft().getX() + cropBox.getLowerLeftX() - mediaBox.getLowerLeftY();
var y1 = rectangle.getTopLeft().getY() + (mediaBox.getLowerLeftY() - cropBox.getLowerLeftY());
var x1 = rectangle.getTopLeft().getX() + cropBox.getLowerLeftX() - mediaBox.getLowerLeftX() + (cropBox.toString().equals(mediaBox.toString()) ? cropBox.getLowerLeftX() : 0f);
var y1 = rectangle.getTopLeft().getY() + (mediaBox.getLowerLeftY() - cropBox.getLowerLeftY()) + (cropBox.toString().equals(mediaBox.toString()) ? cropBox.getLowerLeftY() : 0f);
var x2 = rectangle.getTopLeft()
.getX() + rectangle.getWidth() + cropBox.getLowerLeftX() - mediaBox.getLowerLeftY();
.getX() + rectangle.getWidth() + cropBox.getLowerLeftX() - mediaBox.getLowerLeftX() + (cropBox.toString().equals(mediaBox.toString()) ? cropBox.getLowerLeftX() : 0f);
var y2 = rectangle.getTopLeft()
.getY() + rectangle.getHeight() - (mediaBox.getLowerLeftY() - cropBox.getLowerLeftY());
.getY() + rectangle.getHeight() - (mediaBox.getLowerLeftY() - cropBox.getLowerLeftY()) + (cropBox.toString().equals(mediaBox.toString()) ? cropBox.getLowerLeftY() : 0f);
// quadPoints is array of x,y coordinates in Z-like order (top-left, top-right, bottom-left,bottom-right)
// of the area to be highlighted
@@ -84,7 +84,7 @@ public class DictionaryService {
DictionaryRepresentation dictionaryRepresentation = new DictionaryRepresentation();
var typeResponse = dossierId == null ? dictionaryClient.getAllTypesForDossierTemplate(dossierTemplateId) : dictionaryClient.getAllTypesForDossier(dossierId);
if (typeResponse != null && CollectionUtils.isNotEmpty(typeResponse)) {
if (CollectionUtils.isNotEmpty(typeResponse)) {
List<DictionaryModel> dictionary = typeResponse
.stream()
@@ -209,18 +209,18 @@ public class EntityRedactionService {
for (DictionaryModel model : dictionary.getDictionaryModels()) {
if (model.isCaseInsensitive()) {
EntitySearchUtils.addOrAddEngine(found, EntitySearchUtils.find(lowercaseInputString, model.getValues(local), model
.getType(), headline, sectionNumber, !local, model.isDossierDictionary(), Engine.DICTIONARY));
.getType(), headline, sectionNumber, !local, model.isDossierDictionary(), local ? Engine.RULE : Engine.DICTIONARY));
} else {
EntitySearchUtils.addOrAddEngine(found, EntitySearchUtils.find(searchableString, model.getValues(local), model
.getType(), headline, sectionNumber, !local, model.isDossierDictionary(), Engine.DICTIONARY));
.getType(), headline, sectionNumber, !local, model.isDossierDictionary(), local ? Engine.RULE : Engine.DICTIONARY));
}
}
if (!local) {
Map<String, Set<String>> nerValuesPerType = getNerValues(sectionNumber, nerEntities, cellstarts);
nerValuesPerType.entrySet().forEach(entry -> {
EntitySearchUtils.addOrAddEngine(found, EntitySearchUtils.find(searchableString, entry.getValue(), entry
.getKey(), headline, sectionNumber, false, false, Engine.NER));
EntitySearchUtils.addEntitiesWithHigherRank(found, EntitySearchUtils.find(searchableString, entry.getValue(), entry
.getKey(), headline, sectionNumber, false, false, Engine.NER), dictionary);
});
}
@@ -1,19 +1,17 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import java.util.stream.Collectors;
import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.dossier.file.FileType;
import org.apache.commons.codec.binary.Base64;
import org.springframework.stereotype.Service;
import com.iqser.red.service.redaction.v1.server.client.EntityRecognitionClient;
import com.iqser.red.service.redaction.v1.server.client.model.EntityRecognitionRequest;
import com.iqser.red.service.redaction.v1.server.client.model.EntityRecognitionSection;
import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
import org.apache.commons.codec.binary.Base64;
import org.springframework.stereotype.Service;
import java.util.stream.Collectors;
@Slf4j
@Service
@@ -31,20 +29,24 @@ public class NerAnalyserService {
long start = System.currentTimeMillis();
var nerRequest = EntityRecognitionRequest.builder()
.data(text.getSectionTexts()
.stream()
.map(sectionText -> new EntityRecognitionSection(sectionText.getSectionNumber(), new String(Base64
.encodeBase64(sectionText
.getText().getBytes()))))
.collect(Collectors.toList()))
.build();
if (text != null) {
var nerRequest = EntityRecognitionRequest.builder()
.data(text.getSectionTexts()
.stream()
.map(sectionText -> new EntityRecognitionSection(sectionText.getSectionNumber(), new String(Base64
.encodeBase64(sectionText
.getText().getBytes()))))
.collect(Collectors.toList()))
.build();
var nerResponse = entityRecognitionClient.findAuthors(nerRequest);
var nerResponse = entityRecognitionClient.findAuthors(nerRequest);
log.info("Computing NER entities took: {} ms for dossierId {} and fileId {}", System.currentTimeMillis() - start, dossierId, fileId);
log.info("Computing NER entities took: {} ms for dossierId {} and fileId {}", System.currentTimeMillis() - start, dossierId, fileId);
redactionStorageService.storeObject(dossierId, fileId, FileType.NER_ENTITIES, nerResponse);
redactionStorageService.storeObject(dossierId, fileId, FileType.NER_ENTITIES, nerResponse);
} else {
log.warn("Warning, text for file: {} in dossier: {} is null", fileId, dossierId);
}
}
}
@@ -1,15 +1,5 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import java.util.ArrayList;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.stream.Collectors;
import org.apache.commons.collections4.CollectionUtils;
import org.springframework.stereotype.Service;
import com.iqser.red.service.redaction.v1.model.Point;
import com.iqser.red.service.redaction.v1.model.Rectangle;
import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
@@ -20,8 +10,12 @@ import com.iqser.red.service.redaction.v1.server.redaction.model.EntityPositionS
import com.iqser.red.service.redaction.v1.server.redaction.model.Image;
import com.iqser.red.service.redaction.v1.server.redaction.model.PageEntities;
import com.iqser.red.service.redaction.v1.server.redaction.utils.IdBuilder;
import lombok.RequiredArgsConstructor;
import org.apache.commons.collections4.CollectionUtils;
import org.springframework.stereotype.Service;
import java.util.*;
import java.util.stream.Collectors;
@Service
@RequiredArgsConstructor
@@ -30,14 +24,13 @@ public class RedactionLogCreatorService {
private final DictionaryService dictionaryService;
public List<RedactionLogEntry> createRedactionLog(PageEntities pageEntities, int numberOfPages,
String dossierTemplateId, String dossierId) {
public List<RedactionLogEntry> createRedactionLog(PageEntities pageEntities, int numberOfPages, String dossierTemplateId) {
List<RedactionLogEntry> entries = new ArrayList<>();
for (int page = 1; page <= numberOfPages; page++) {
if (pageEntities.getEntitiesPerPage().get(page) != null) {
entries.addAll(addEntries(pageEntities.getEntitiesPerPage(), page, dossierTemplateId, dossierId));
entries.addAll(addEntries(pageEntities.getEntitiesPerPage(), page, dossierTemplateId));
}
if (pageEntities.getImagesPerPage().get(page) != null) {
@@ -62,7 +55,7 @@ public class RedactionLogCreatorService {
.id(id)
.color(getColor(image.getType(), dossierTemplateId, image.isRedaction()))
.isImage(true)
.typeId(IdBuilder.getTypeId(image.getType(), dossierTemplateId, null))
.type(image.getType())
.redacted(image.isRedaction())
.reason(image.getRedactionReason())
.legalBasis(image.getLegalBasis())
@@ -86,7 +79,7 @@ public class RedactionLogCreatorService {
}
public List<RedactionLogEntry> addEntries(Map<Integer, List<Entity>> entities, int page, String dossierTemplateId, String dossierId) {
public List<RedactionLogEntry> addEntries(Map<Integer, List<Entity>> entities, int page, String dossierTemplateId) {
List<RedactionLogEntry> redactionLogEntities = new ArrayList<>();
@@ -98,7 +91,7 @@ public class RedactionLogCreatorService {
for (EntityPositionSequence entityPositionSequence : entity.getPositionSequences()) {
RedactionLogEntry redactionLogEntry = createRedactionLogEntry(entity, dossierTemplateId, dossierId);
RedactionLogEntry redactionLogEntry = createRedactionLogEntry(entity, dossierTemplateId);
if (processedIds.contains(entityPositionSequence.getId())) {
// TODO refactor this outer loop jump as soon as we have the time.
@@ -140,7 +133,7 @@ public class RedactionLogCreatorService {
int startIndex = 0;
for (int i = 1; i < textPositions.size(); i++) {
float yDirAdj = textPositions.get(i).getYDirAdj();
if (yDirAdj != y) {
if (round(yDirAdj,3) != round(y, 3)) {
rectangles.add(TextPositionSequence.fromData(textPositions.subList(startIndex, i), page)
.getRectangle());
y = yDirAdj;
@@ -156,8 +149,13 @@ public class RedactionLogCreatorService {
return rectangles;
}
private double round(float value, int decimalPoints) {
var d = Math.pow(10, decimalPoints);
return Math.round(value * d) / d;
}
private RedactionLogEntry createRedactionLogEntry(Entity entity, String dossierTemplateId, String dossierId) {
private RedactionLogEntry createRedactionLogEntry(Entity entity, String dossierTemplateId) {
Set<String> referenceIds = new HashSet<>();
entity.getReferences().forEach(ref -> ref.getPositionSequences().forEach(pos -> referenceIds.add(pos.getId())));
@@ -167,7 +165,7 @@ public class RedactionLogCreatorService {
.reason(entity.getRedactionReason())
.legalBasis(entity.getLegalBasis())
.value(entity.getWord())
.typeId(IdBuilder.getTypeId(entity.getType(), dossierTemplateId, entity.isDossierDictionaryEntry() ? dossierId : null))
.type(entity.getType())
.redacted(entity.isRedaction())
.isHint(isHint(entity.getType(), dossierTemplateId))
.isRecommendation(isRecommendation(entity.getType(), dossierTemplateId))
@@ -207,5 +205,4 @@ public class RedactionLogCreatorService {
}
}
@@ -1,27 +1,17 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import java.time.OffsetDateTime;
import java.util.ArrayList;
import java.util.Collections;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.stream.Collectors;
import com.iqser.red.service.persistence.service.v1.api.model.annotations.*;
import org.springframework.stereotype.Service;
import com.iqser.red.service.redaction.v1.model.ManualRedactionType;
import com.iqser.red.service.redaction.v1.model.Point;
import com.iqser.red.service.redaction.v1.model.Rectangle;
import com.iqser.red.service.redaction.v1.model.RedactionLog;
import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
import com.iqser.red.service.redaction.v1.server.redaction.utils.IdBuilder;
import com.iqser.red.service.redaction.v1.model.*;
import lombok.AllArgsConstructor;
import lombok.Data;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
import org.springframework.stereotype.Service;
import java.time.OffsetDateTime;
import java.util.*;
import java.util.stream.Collectors;
@Slf4j
@Service
@@ -30,14 +20,16 @@ public class RedactionLogMergeService {
private final DictionaryService dictionaryService;
private final SectionTextService sectionTextService;
public RedactionLog mergeRedactionLogData(RedactionLog redactionLog, String dossierTemplateId,
public RedactionLog mergeRedactionLogData(RedactionLog redactionLog, SectionGrid sectionGrid, String dossierTemplateId,
ManualRedactions manualRedactions, Set<Integer> excludedPages) {
log.info("Merging Redaction log with manual redactions {}", manualRedactions);
log.info("Merging Redaction log with manual redactions");
if (manualRedactions != null) {
var manualRedactionLogEntries = addManualAddEntries(manualRedactions.getEntriesToAdd(), manualRedactions.getComments(), dossierTemplateId);
var manualRedactionLogEntries = addManualAddEntries(sectionGrid, manualRedactions.getEntriesToAdd(), manualRedactions.getComments(), dossierTemplateId);
redactionLog.getRedactionLogEntry().addAll(manualRedactionLogEntries);
@@ -53,7 +45,7 @@ public class RedactionLogMergeService {
if (excludedPages != null && !excludedPages.isEmpty()) {
entry.getPositions().forEach(pos -> {
if (excludedPages.contains(pos.getPage())) {
if (!entry.isManual() && excludedPages.contains(pos.getPage())) {
entry.setExcluded(true);
}
});
@@ -94,6 +86,12 @@ public class RedactionLogMergeService {
}
});
manualRedactions.getResizeRedactions().forEach(item -> {
if (item.getSoftDeletedTime() == null) {
manualRedactionWrappers.add(new ManualRedactionWrapper(item.getAnnotationId(), item.getRequestDate(), item));
}
});
Collections.sort(manualRedactionWrappers);
return manualRedactionWrappers;
@@ -110,12 +108,14 @@ public class RedactionLogMergeService {
String manualOverrideReason = null;
if (imageRecategorization.getStatus().equals(AnnotationStatus.APPROVED)) {
redactionLogEntry.setStatus(AnnotationStatus.APPROVED);
redactionLogEntry.setTypeId(IdBuilder.getTypeId(imageRecategorization.getType(), dossierTemplateId, null));
redactionLogEntry.setType(imageRecategorization.getType());
redactionLogEntry.setHasBeenRecategorized(true);
redactionLogEntry.setSection("Image:" + redactionLogEntry.getType());
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", recategorized by manual override");
} else if (imageRecategorization.getStatus().equals(AnnotationStatus.REQUESTED)) {
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", requested to recategorize");
redactionLogEntry.setStatus(AnnotationStatus.REQUESTED);
redactionLogEntry.setColor(getColor(getTypeFromTypeId(redactionLogEntry.getTypeId()), dossierTemplateId, false, redactionLogEntry
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), dossierTemplateId, false, redactionLogEntry
.isRedacted(), false));
redactionLogEntry.setRecategorizationType(imageRecategorization.getType());
} else {
@@ -135,12 +135,13 @@ public class RedactionLogMergeService {
redactionLogEntry.setRedacted(false);
redactionLogEntry.setStatus(AnnotationStatus.APPROVED);
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", removed by manual override");
redactionLogEntry.setColor(getColor(getTypeFromTypeId(redactionLogEntry.getTypeId()), dossierTemplateId, false, redactionLogEntry
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), dossierTemplateId, false, redactionLogEntry
.isRedacted(), true));
redactionLogEntry.setHasBeenRemovedByManualOverride(true);
} else if (manualRemoval.getStatus().equals(AnnotationStatus.REQUESTED)) {
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", requested to remove");
redactionLogEntry.setStatus(AnnotationStatus.REQUESTED);
redactionLogEntry.setColor(getColor(getTypeFromTypeId(redactionLogEntry.getTypeId()), dossierTemplateId, true, redactionLogEntry
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), dossierTemplateId, true, redactionLogEntry
.isRedacted(), false));
} else {
redactionLogEntry.setStatus(AnnotationStatus.DECLINED);
@@ -160,14 +161,15 @@ public class RedactionLogMergeService {
if (manualForceRedact.getStatus().equals(AnnotationStatus.APPROVED)) {
redactionLogEntry.setRedacted(true);
redactionLogEntry.setStatus(AnnotationStatus.APPROVED);
redactionLogEntry.setColor(getColor(getTypeFromTypeId(redactionLogEntry.getTypeId()), dossierTemplateId, false, redactionLogEntry
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), dossierTemplateId, false, redactionLogEntry
.isRedacted(), false));
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", forced by manual override");
redactionLogEntry.setHasBeenForced(true);
redactionLogEntry.setLegalBasis(manualForceRedact.getLegalBasis());
} else if (manualForceRedact.getStatus().equals(AnnotationStatus.REQUESTED)) {
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", requested to force redact");
redactionLogEntry.setStatus(AnnotationStatus.REQUESTED);
redactionLogEntry.setColor(getColor(getTypeFromTypeId(redactionLogEntry.getTypeId()), dossierTemplateId, true, redactionLogEntry
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), dossierTemplateId, true, redactionLogEntry
.isRedacted(), false));
redactionLogEntry.setLegalBasis(manualForceRedact.getLegalBasis());
} else {
@@ -188,10 +190,15 @@ public class RedactionLogMergeService {
redactionLogEntry.setStatus(AnnotationStatus.APPROVED);
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", legal basis was manually changed");
redactionLogEntry.setLegalBasis(manualLegalBasisChange.getLegalBasis());
redactionLogEntry.setRedacted(true);
redactionLogEntry.setHasLegalBasisChanged(true);
if (manualLegalBasisChange.getSection() != null) {
redactionLogEntry.setSection(manualLegalBasisChange.getSection());
}
} else if (manualLegalBasisChange.getStatus().equals(AnnotationStatus.REQUESTED)) {
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", legal basis change requested");
redactionLogEntry.setStatus(AnnotationStatus.REQUESTED);
redactionLogEntry.setColor(getColor(getTypeFromTypeId(redactionLogEntry.getTypeId()), dossierTemplateId, true, redactionLogEntry
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), dossierTemplateId, true, redactionLogEntry
.isRedacted(), false));
redactionLogEntry.setLegalBasisChangeValue(manualLegalBasisChange.getLegalBasis());
} else {
@@ -204,6 +211,34 @@ public class RedactionLogMergeService {
redactionLogEntry.setManualRedactionType(ManualRedactionType.LEGAL_BASIS_CHANGE);
}
if (mrw.getItem() instanceof ManualResizeRedaction) {
var manualResizeRedact = (ManualResizeRedaction) mrw.getItem();
String manualOverrideReason = null;
if (manualResizeRedact.getStatus().equals(AnnotationStatus.APPROVED)) {
redactionLogEntry.setStatus(AnnotationStatus.APPROVED);
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), dossierTemplateId, false, redactionLogEntry
.isRedacted(), false));
redactionLogEntry.setPositions(convertPositions(manualResizeRedact.getPositions()));
redactionLogEntry.setValue(manualResizeRedact.getValue());
redactionLogEntry.setHasBeenResized(true);
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", resized by manual override");
} else if (manualResizeRedact.getStatus().equals(AnnotationStatus.REQUESTED)) {
manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", requested to resize redact");
redactionLogEntry.setStatus(AnnotationStatus.REQUESTED);
redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), dossierTemplateId, true, redactionLogEntry
.isRedacted(), false));
redactionLogEntry.setPositions(convertPositions(manualResizeRedact.getPositions()));
} else {
redactionLogEntry.setStatus(AnnotationStatus.DECLINED);
}
redactionLogEntry.setManualRedactionUserId(manualResizeRedact.getUser());
redactionLogEntry.setReason(manualOverrideReason);
redactionLogEntry.setManual(true);
redactionLogEntry.setManualRedactionType(ManualRedactionType.RESIZE);
}
});
}
@@ -222,7 +257,7 @@ public class RedactionLogMergeService {
}
public List<RedactionLogEntry> addManualAddEntries(Set<ManualRedactionEntry> manualAdds,
public List<RedactionLogEntry> addManualAddEntries(SectionGrid sectionGrid, Set<ManualRedactionEntry> manualAdds,
Map<String, List<Comment>> comments, String dossierTemplateId) {
List<RedactionLogEntry> redactionLogEntries = new ArrayList<>();
@@ -233,6 +268,9 @@ public class RedactionLogMergeService {
RedactionLogEntry redactionLogEntry = createRedactionLogEntry(manualRedactionEntry, manualRedactionEntry.getAnnotationId(), dossierTemplateId);
redactionLogEntry.setPositions(convertPositions(manualRedactionEntry.getPositions()));
redactionLogEntry.setComments(comments.get(manualRedactionEntry.getAnnotationId()));
sectionTextService.handleSectionText(sectionGrid, redactionLogEntry);
redactionLogEntries.add(redactionLogEntry);
}
}
@@ -240,8 +278,8 @@ public class RedactionLogMergeService {
return redactionLogEntries;
}
private List<Rectangle> convertPositions(List<com.iqser.red.service.persistence.service.v1.api.model.annotations.Rectangle> positions){
return positions.stream().map(pos -> new Rectangle(new Point(pos.getTopLeftX(), pos.getTopLeftY()), pos.getWidth(), pos
private List<Rectangle> convertPositions(List<com.iqser.red.service.persistence.service.v1.api.model.annotations.Rectangle> positions) {
return positions.stream().map(pos -> new Rectangle(new Point(pos.getTopLeftX(), pos.getTopLeftY()), pos.getWidth(), pos
.getHeight(), pos.getPage())).collect(Collectors.toList());
}
@@ -258,16 +296,16 @@ public class RedactionLogMergeService {
return RedactionLogEntry.builder()
.id(id)
.color(getColorForManualAdd(getTypeFromTypeId(manualRedactionEntry.getTypeId()), dossierTemplateId, manualRedactionEntry.getStatus()))
.color(getColorForManualAdd(manualRedactionEntry.getType(), dossierTemplateId, manualRedactionEntry.getStatus()))
.reason(manualRedactionEntry.getReason())
.isDictionaryEntry(manualRedactionEntry.isAddToDictionary())
.isDossierDictionaryEntry(manualRedactionEntry.isAddToDossierDictionary())
.legalBasis(manualRedactionEntry.getLegalBasis())
.value(manualRedactionEntry.getValue())
.typeId(manualRedactionEntry.getTypeId())
.section(manualRedactionEntry.getSection())
.type(manualRedactionEntry.getType())
.redacted(true)
.isHint(false)
.section(null)
.sectionNumber(-1)
.manual(true)
.status(manualRedactionEntry.getStatus())
@@ -324,12 +362,6 @@ public class RedactionLogMergeService {
}
private String getTypeFromTypeId(String typeId){
return typeId.split(":")[0];
}
}
@@ -0,0 +1,39 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
import com.iqser.red.service.redaction.v1.model.SectionGrid;
import lombok.extern.slf4j.Slf4j;
import org.springframework.stereotype.Service;
@Slf4j
@Service
public class SectionTextService {
public void handleSectionText(SectionGrid sectionGrid, RedactionLogEntry redactionLogEntry) {
if (redactionLogEntry.getSection() != null) {
// set by UI
return;
}
if (sectionGrid != null) {
var firstPosition = !redactionLogEntry.getPositions().isEmpty() ? redactionLogEntry.getPositions().iterator().next() : null;
if (firstPosition != null) {
for (var section : sectionGrid.getSections()) {
if (section.getPages().contains(firstPosition.getPage())) {
for (var sectionArea : section.getSectionAreas()) {
if (sectionArea.contains(firstPosition)) {
redactionLogEntry.setSection(section.getHeadline());
redactionLogEntry.setSectionNumber(section.getSectionNumber());
return;
}
}
}
}
}
}
}
}
@@ -146,11 +146,11 @@ public class EntitySearchUtils {
}
var existing = existingOptional.get();
if (dictionary.getDictionaryRank(existing.getType()) <= dictionary.getDictionaryRank(found.getType())) {
if(existing.getType().equals(found.getType())){
existing.getEngines().addAll(found.getEngines());
} else if (dictionary.getDictionaryRank(existing.getType()) <= dictionary.getDictionaryRank(found.getType())){
entities.remove(found);
entities.add(found);
} else {
existing.getEngines().addAll(found.getEngines());
}
} else {
entities.add(found);
@@ -11,8 +11,7 @@ public class Patterns {
public static Map<String, Pattern> patternCache = new HashMap<>();
public static Pattern AUTHOR_TABLE_SPITTER = Pattern.compile("((((di)|(van)) )|[A-Z]’)?[A-ZÄÖÜ][\\wäöüéèê]{2,}( ?[A-ZÄÖÜ]{1,2}\\.)+|((((di)|(van)) )|[A-Z]’)?[A-ZÄÖÜ][\\wäöüéèê]{2,}( ?[A-ZÄÖÜ]{1,2} )+");
public static Pattern AUTHOR_TABLE_SPITTER = Pattern.compile("(((((di)|(van)) )|[A-Z]’)?[A-ZÄÖÜ][\\wäöüéèê]{2,500}( ?[A-ZÄÖÜ]{1,2}\\.){1,3})|(((((di)|(van)) )|[A-Z]’)?[A-ZÄÖÜ][\\wäöüéèê]{2,500}( ?[A-ZÄÖÜ]{1,2} ){1,3})");
public Pattern getCompiledPattern(String pattern, boolean caseInsensitive) {
@@ -12,7 +12,7 @@ public class TextNormalizationUtilities {
* @return Text without line-break hyphenation.
*/
public static String removeHyphenLineBreaks(String text) {
return text.replaceAll("([^\\s\\d\\-]{2,})[\\-\\u00AD]\\R", "$1");
return text.replaceAll("([^\\s\\d\\-]{2,500})[\\-\\u00AD]\\R", "$1");
}
}
@@ -4,10 +4,16 @@ import java.io.File;
import java.io.FileOutputStream;
import java.io.IOException;
import java.io.InputStream;
import java.nio.file.Files;
import java.nio.file.attribute.FileAttribute;
import java.nio.file.attribute.PosixFilePermission;
import java.nio.file.attribute.PosixFilePermissions;
import java.util.ArrayList;
import java.util.List;
import java.util.Set;
import org.apache.commons.io.IOUtils;
import org.apache.commons.lang3.SystemUtils;
import org.apache.pdfbox.io.MemoryUsageSetting;
import org.apache.pdfbox.pdmodel.PDDocument;
import org.apache.pdfbox.pdmodel.PDPage;
@@ -59,7 +65,19 @@ public class PdfSegmentationService {
PDDocument pdDocument = null;
try {
//create tempFile
File tempFile = File.createTempFile("document", ".pdf");
File tempFile;
if(SystemUtils.IS_OS_UNIX) {
FileAttribute<Set<PosixFilePermission>> attr = PosixFilePermissions.asFileAttribute(PosixFilePermissions.fromString("rwx------"));
tempFile = Files.createTempFile("document", ".pdf", attr).toFile();
}
else {
tempFile = Files.createTempFile("document", ".pdf").toFile();
tempFile.setReadable(true, true);
tempFile.setWritable(true, true);
tempFile.setExecutable(true, true);
}
try (var fos = new FileOutputStream(tempFile)) {
IOUtils.copy(documentInputStream, fos);
@@ -40,3 +40,4 @@ storage:
bucket-name: 'redaction'
region: 'us-east-1'
endpoint: 'https://s3.amazonaws.com'
backend: 's3'
@@ -1,6 +1,7 @@
package com.iqser.red.service.redaction.v1.server;
import com.iqser.red.storage.commons.exception.StorageObjectDoesNotExist;
import com.iqser.red.storage.commons.service.S3StorageService;
import com.iqser.red.storage.commons.service.StorageService;
import lombok.SneakyThrows;
import org.apache.commons.io.IOUtils;
@@ -12,7 +13,7 @@ import java.io.FileOutputStream;
import java.util.HashMap;
import java.util.Map;
public class FileSystemBackedStorageService extends StorageService {
public class FileSystemBackedStorageService extends S3StorageService {
private final Map<String, File> dataMap = new HashMap<>();
@@ -21,9 +21,13 @@ import com.iqser.red.service.redaction.v1.server.redaction.service.AnalyzeServic
import com.iqser.red.service.redaction.v1.server.redaction.utils.ResourceLoader;
import com.iqser.red.service.redaction.v1.server.redaction.utils.TextNormalizationUtilities;
import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
import com.iqser.red.storage.commons.StorageAutoConfiguration;
import com.iqser.red.storage.commons.service.StorageService;
import lombok.SneakyThrows;
import org.apache.commons.io.IOUtils;
import org.apache.commons.lang3.StringUtils;
import org.junit.After;
import org.junit.Before;
import org.junit.Ignore;
@@ -137,7 +141,7 @@ public class RedactionIntegrationTest {
private final static String TEST_FILE_ID = "123";
@Configuration
@EnableAutoConfiguration(exclude = {RabbitAutoConfiguration.class})
@EnableAutoConfiguration(exclude = {RabbitAutoConfiguration.class, StorageAutoConfiguration.class})
public static class RedactionIntegrationTestConfiguration {
@Bean
@@ -199,42 +203,26 @@ public class RedactionIntegrationTest {
.rank(rankTypeMap.get(DOSSIER_REDACTIONS))
.build()));
when(dictionaryClient.getDictionaryForType(VERTEBRATE + ":" + TEST_DOSSIER_TEMPLATE_ID))
.thenReturn(getDictionaryResponse(VERTEBRATE, false));
when(dictionaryClient.getDictionaryForType(ADDRESS + ":" + TEST_DOSSIER_TEMPLATE_ID))
.thenReturn(getDictionaryResponse(ADDRESS, false));
when(dictionaryClient.getDictionaryForType(AUTHOR + ":" + TEST_DOSSIER_TEMPLATE_ID))
.thenReturn(getDictionaryResponse(AUTHOR, false));
when(dictionaryClient.getDictionaryForType(SPONSOR + ":" + TEST_DOSSIER_TEMPLATE_ID))
.thenReturn(getDictionaryResponse(SPONSOR, false));
when(dictionaryClient.getDictionaryForType(NO_REDACTION_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID))
.thenReturn(getDictionaryResponse(NO_REDACTION_INDICATOR, false));
when(dictionaryClient.getDictionaryForType(REDACTION_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID))
.thenReturn(getDictionaryResponse(REDACTION_INDICATOR, false));
when(dictionaryClient.getDictionaryForType(HINT_ONLY + ":" + TEST_DOSSIER_TEMPLATE_ID))
.thenReturn(getDictionaryResponse(HINT_ONLY, false));
when(dictionaryClient.getDictionaryForType(MUST_REDACT + ":" + TEST_DOSSIER_TEMPLATE_ID))
.thenReturn(getDictionaryResponse(MUST_REDACT, false));
when(dictionaryClient.getDictionaryForType(PUBLISHED_INFORMATION + ":" + TEST_DOSSIER_TEMPLATE_ID))
.thenReturn(getDictionaryResponse(PUBLISHED_INFORMATION, false));
when(dictionaryClient.getDictionaryForType(TEST_METHOD + ":" + TEST_DOSSIER_TEMPLATE_ID))
.thenReturn(getDictionaryResponse(TEST_METHOD, false));
when(dictionaryClient.getDictionaryForType(VERTEBRATE + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(VERTEBRATE, false));
when(dictionaryClient.getDictionaryForType(ADDRESS + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(ADDRESS, false));
when(dictionaryClient.getDictionaryForType(AUTHOR + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(AUTHOR, false));
when(dictionaryClient.getDictionaryForType(SPONSOR + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(SPONSOR, false));
when(dictionaryClient.getDictionaryForType(NO_REDACTION_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(NO_REDACTION_INDICATOR, false));
when(dictionaryClient.getDictionaryForType(REDACTION_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(REDACTION_INDICATOR, false));
when(dictionaryClient.getDictionaryForType(HINT_ONLY + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(HINT_ONLY, false));
when(dictionaryClient.getDictionaryForType(MUST_REDACT + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(MUST_REDACT, false));
when(dictionaryClient.getDictionaryForType(PUBLISHED_INFORMATION + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(PUBLISHED_INFORMATION, false));
when(dictionaryClient.getDictionaryForType(TEST_METHOD + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(TEST_METHOD, false));
when(dictionaryClient.getDictionaryForType(PII + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(PII, false));
when(dictionaryClient.getDictionaryForType(RECOMMENDATION_AUTHOR + ":" + TEST_DOSSIER_TEMPLATE_ID))
.thenReturn(getDictionaryResponse(RECOMMENDATION_AUTHOR, false));
when(dictionaryClient.getDictionaryForType(RECOMMENDATION_ADDRESS + ":" + TEST_DOSSIER_TEMPLATE_ID))
.thenReturn(getDictionaryResponse(RECOMMENDATION_ADDRESS, false));
when(dictionaryClient.getDictionaryForType(FALSE_POSITIVE + ":" + TEST_DOSSIER_TEMPLATE_ID))
.thenReturn(getDictionaryResponse(FALSE_POSITIVE, false));
when(dictionaryClient.getDictionaryForType(PURITY + ":" + TEST_DOSSIER_TEMPLATE_ID))
.thenReturn(getDictionaryResponse(PURITY, false));
when(dictionaryClient.getDictionaryForType(RECOMMENDATION_AUTHOR + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(RECOMMENDATION_AUTHOR, false));
when(dictionaryClient.getDictionaryForType(RECOMMENDATION_ADDRESS + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(RECOMMENDATION_ADDRESS, false));
when(dictionaryClient.getDictionaryForType(FALSE_POSITIVE + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(FALSE_POSITIVE, false));
when(dictionaryClient.getDictionaryForType(PURITY + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(PURITY, false));
when(dictionaryClient.getDictionaryForType(IMAGE + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(IMAGE, false));
when(dictionaryClient.getDictionaryForType(OCR + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(OCR, false));
when(dictionaryClient.getDictionaryForType(LOGO + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(LOGO, false));
when(dictionaryClient.getDictionaryForType(SIGNATURE + ":" + TEST_DOSSIER_TEMPLATE_ID))
.thenReturn(getDictionaryResponse(SIGNATURE, false));
when(dictionaryClient.getDictionaryForType(FORMULA + ":" + TEST_DOSSIER_TEMPLATE_ID))
.thenReturn(getDictionaryResponse(FORMULA, false));
when(dictionaryClient.getDictionaryForType(SIGNATURE + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(SIGNATURE, false));
when(dictionaryClient.getDictionaryForType(FORMULA + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(FORMULA, false));
when(dictionaryClient.getDictionaryForType(DOSSIER_REDACTIONS + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(DOSSIER_REDACTIONS, true));
when(dictionaryClient.getColors(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(colors);
}
@@ -498,8 +486,7 @@ public class RedactionIntegrationTest {
return Type.builder()
.id(type + ":" + TEST_DOSSIER_TEMPLATE_ID)
.hexColor(typeColorMap.get(type))
.entries(isDossierDictionary ? toDictionaryEntry(dossierDictionary.get(type)) : toDictionaryEntry(dictionary
.get(type)))
.entries(isDossierDictionary ? toDictionaryEntry(dossierDictionary.get(type)) : toDictionaryEntry(dictionary.get(type)))
.isHint(hintTypeMap.get(type))
.isCaseInsensitive(caseInSensitiveMap.get(type))
.isRecommendation(recommendationTypeMap.get(type))
@@ -515,7 +502,8 @@ public class RedactionIntegrationTest {
dictionaryEntries.add(DictionaryEntry.builder()
.value(entry)
.version(reanlysisVersions.getOrDefault(entry, 0L))
.deleted(deleted.contains(entry)).build());
.deleted(deleted.contains(entry))
.build());
});
return dictionaryEntries;
}
@@ -574,7 +562,7 @@ public class RedactionIntegrationTest {
.fileId(TEST_FILE_ID)
.build());
try (FileOutputStream fileOutputStream = new FileOutputStream("/tmp/Annotated3.pdf")) {
try (FileOutputStream fileOutputStream = new FileOutputStream(getTemporaryDirectory() + "/Annotated3.pdf")) {
fileOutputStream.write(annotateResponse.getDocument());
}
long rstart = System.currentTimeMillis();
@@ -665,7 +653,7 @@ public class RedactionIntegrationTest {
public void redactionTest() throws IOException {
long start = System.currentTimeMillis();
ClassPathResource pdfFileResource = new ClassPathResource("files/S11.pdf");
ClassPathResource pdfFileResource = new ClassPathResource("files/new/VV-919901.pdf");
AnalyzeRequest request = prepareStorage(pdfFileResource.getInputStream());
request.setExcludedPages(Set.of(1));
@@ -682,17 +670,11 @@ public class RedactionIntegrationTest {
var redactionLog = redactionStorageService.getRedactionLog(TEST_DOSSIER_ID, TEST_FILE_ID);
var text = redactionStorageService.getText(TEST_DOSSIER_ID, TEST_FILE_ID);
redactionLog.getRedactionLogEntry().forEach(entry -> {
if (entry.isImage()) {
System.out.println("---->" + entry.getTypeId());
}
});
long end = System.currentTimeMillis();
System.out.println("first analysis duration: " + (end - start));
try (FileOutputStream fileOutputStream = new FileOutputStream("/tmp/Test.json")) {
try (FileOutputStream fileOutputStream = new FileOutputStream(getTemporaryDirectory() + "/Test.json")) {
fileOutputStream.write(objectMapper.writeValueAsBytes(redactionStorageService.getText(TEST_DOSSIER_ID, TEST_FILE_ID)));
}
@@ -733,11 +715,9 @@ public class RedactionIntegrationTest {
when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(3L);
when(dictionaryClient.getDictionaryForType(VERTEBRATE))
.thenReturn(getDictionaryResponse(VERTEBRATE, false));
when(dictionaryClient.getDictionaryForType(VERTEBRATE)).thenReturn(getDictionaryResponse(VERTEBRATE, false));
when(dictionaryClient.getDictionaryForType(FALSE_POSITIVE))
.thenReturn(getDictionaryResponse(FALSE_POSITIVE, false));
when(dictionaryClient.getDictionaryForType(FALSE_POSITIVE)).thenReturn(getDictionaryResponse(FALSE_POSITIVE, false));
start = System.currentTimeMillis();
@@ -764,18 +744,16 @@ public class RedactionIntegrationTest {
.fileId(TEST_FILE_ID)
.build());
try (FileOutputStream fileOutputStream = new FileOutputStream("/tmp/Annotated.pdf")) {
try (FileOutputStream fileOutputStream = new FileOutputStream(getTemporaryDirectory() + "/Annotated.pdf")) {
fileOutputStream.write(annotateResponse.getDocument());
}
deleted.remove("mouse");
reanlysisVersions.put("mouse", 4L);
when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(4L);
when(dictionaryClient.getDictionaryForType(VERTEBRATE))
.thenReturn(getDictionaryResponse(VERTEBRATE, false));
when(dictionaryClient.getDictionaryForType(VERTEBRATE)).thenReturn(getDictionaryResponse(VERTEBRATE, false));
analyzeService.reanalyze(request);
@@ -800,7 +778,7 @@ public class RedactionIntegrationTest {
.fileId(TEST_FILE_ID)
.build());
try (FileOutputStream fileOutputStream = new FileOutputStream("/tmp/Annotated.pdf")) {
try (FileOutputStream fileOutputStream = new FileOutputStream(getTemporaryDirectory() + "/Annotated.pdf")) {
fileOutputStream.write(annotateResponse.getDocument());
}
long end = System.currentTimeMillis();
@@ -848,24 +826,22 @@ public class RedactionIntegrationTest {
manualRedactionEntry.setAnnotationId(manualAddId);
manualRedactionEntry.setFileId("fileId");
manualRedactionEntry.setStatus(AnnotationStatus.REQUESTED);
manualRedactionEntry.setTypeId("name:" + TEST_DOSSIER_TEMPLATE_ID);
manualRedactionEntry.setType("name");
manualRedactionEntry.setValue("O'Loughlin C.K.");
manualRedactionEntry.setReason("Manual Redaction");
manualRedactionEntry.setPositions(List.of(Rectangle
.builder()
.topLeftX(375.61096f)
.topLeftY(241.282f)
.width(7.648041f)
.height(43.72262f)
.page(1).build()
, Rectangle
.builder()
.topLeftX(384.83517f)
.topLeftY(241.282f)
.width(7.648041f)
.height(17.043358f)
.page(1).build())
);
manualRedactionEntry.setPositions(List.of(Rectangle.builder()
.topLeftX(375.61096f)
.topLeftY(241.282f)
.width(7.648041f)
.height(43.72262f)
.page(1)
.build(), Rectangle.builder()
.topLeftX(384.83517f)
.topLeftY(241.282f)
.width(7.648041f)
.height(17.043358f)
.page(1)
.build()));
// manualRedactions.getEntriesToAdd().add(manualRedactionEntry);
@@ -896,7 +872,7 @@ public class RedactionIntegrationTest {
.fileId(TEST_FILE_ID)
.build());
try (FileOutputStream fileOutputStream = new FileOutputStream("/tmp/Annotated.pdf")) {
try (FileOutputStream fileOutputStream = new FileOutputStream(getTemporaryDirectory() + "/Annotated.pdf")) {
fileOutputStream.write(annotateResponse.getDocument());
}
long end = System.currentTimeMillis();
@@ -910,7 +886,7 @@ public class RedactionIntegrationTest {
public void classificationTest() throws IOException {
System.out.println("classificationTest");
ClassPathResource pdfFileResource = new ClassPathResource("files/S11.pdf");
ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Single Table.pdf");
AnalyzeRequest request = prepareStorage(pdfFileResource.getInputStream());
@@ -922,7 +898,7 @@ public class RedactionIntegrationTest {
RedactionResult result = redactionController.classify(redactionRequest);
try (FileOutputStream fileOutputStream = new FileOutputStream("/tmp/Classified.pdf")) {
try (FileOutputStream fileOutputStream = new FileOutputStream(getTemporaryDirectory() + "/Classified.pdf")) {
fileOutputStream.write(result.getDocument());
}
}
@@ -932,7 +908,7 @@ public class RedactionIntegrationTest {
public void sectionsTest() throws IOException {
System.out.println("sectionsTest");
ClassPathResource pdfFileResource = new ClassPathResource("files/S11.pdf");
ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Single Table.pdf");
AnalyzeRequest request = prepareStorage(pdfFileResource.getInputStream());
@@ -944,7 +920,7 @@ public class RedactionIntegrationTest {
RedactionResult result = redactionController.sections(redactionRequest);
try (FileOutputStream fileOutputStream = new FileOutputStream("/tmp/Sections.pdf")) {
try (FileOutputStream fileOutputStream = new FileOutputStream(getTemporaryDirectory() + "/Sections.pdf")) {
fileOutputStream.write(result.getDocument());
}
}
@@ -954,7 +930,7 @@ public class RedactionIntegrationTest {
public void htmlTablesTest() throws IOException {
System.out.println("htmlTablesTest");
ClassPathResource pdfFileResource = new ClassPathResource("files/S11.pdf");
ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Single Table.pdf");
AnalyzeRequest request = prepareStorage(pdfFileResource.getInputStream());
@@ -966,7 +942,7 @@ public class RedactionIntegrationTest {
RedactionResult result = redactionController.htmlTables(redactionRequest);
try (FileOutputStream fileOutputStream = new FileOutputStream("/tmp/Tables.html")) {
try (FileOutputStream fileOutputStream = new FileOutputStream(getTemporaryDirectory() + "/Tables.html")) {
fileOutputStream.write(result.getDocument());
}
}
@@ -988,7 +964,7 @@ public class RedactionIntegrationTest {
RedactionResult result = redactionController.htmlTables(redactionRequest);
try (FileOutputStream fileOutputStream = new FileOutputStream("/tmp/Tables.html")) {
try (FileOutputStream fileOutputStream = new FileOutputStream(getTemporaryDirectory() + "/Tables.html")) {
fileOutputStream.write(result.getDocument());
}
}
@@ -1058,7 +1034,7 @@ public class RedactionIntegrationTest {
.fileId(TEST_FILE_ID)
.build());
try (FileOutputStream fileOutputStream = new FileOutputStream("/tmp/Annotated.pdf")) {
try (FileOutputStream fileOutputStream = new FileOutputStream(getTemporaryDirectory() + "/Annotated.pdf")) {
fileOutputStream.write(annotateResponse.getDocument());
}
long end = System.currentTimeMillis();
@@ -1068,6 +1044,136 @@ public class RedactionIntegrationTest {
}
@Test
public void resizeRedactionTest() throws IOException {
ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Single Table.pdf");
ManualRedactions manualRedactions = new ManualRedactions();
String manualAddId = UUID.randomUUID().toString();
Comment comment = Comment.builder()
.date(OffsetDateTime.now())
.user("TEST_USER")
.text("This is a comment test")
.build();
manualRedactions.setIdsToRemove(Set.of(IdRemoval.builder()
.annotationId("5b940b2cb401ed9f5be6fc24f6e77bcf")
.fileId("fileId")
.status(AnnotationStatus.DECLINED)
.processedDate(OffsetDateTime.now())
.requestDate(OffsetDateTime.now())
.build()));
manualRedactions.setForceRedactions(Set.of(ManualForceRedaction.builder()
.annotationId("675eba69b0c2917de55462c817adaa05")
.fileId("fileId")
.legalBasis("Something")
.status(AnnotationStatus.APPROVED)
.requestDate(OffsetDateTime.now())
.processedDate(OffsetDateTime.now())
.build()));
manualRedactions.getComments().put("e5be0f1d941bbb92a068e198648d06c4", List.of(comment));
manualRedactions.getComments().put("0836727c3508a0b2ea271da69c04cc2f", List.of(comment));
manualRedactions.getComments().put(manualAddId, List.of(comment));
ManualRedactionEntry manualRedactionEntry = new ManualRedactionEntry();
manualRedactionEntry.setAnnotationId(manualAddId);
manualRedactionEntry.setFileId("fileId");
manualRedactionEntry.setStatus(AnnotationStatus.APPROVED);
manualRedactionEntry.setType("CBI_author");
manualRedactionEntry.setValue("O'Loughlin C.K.");
manualRedactionEntry.setReason("Manual Redaction");
manualRedactionEntry.setProcessedDate(OffsetDateTime.now());
manualRedactionEntry.setRequestDate(OffsetDateTime.now());
manualRedactionEntry.setPositions(List.of(Rectangle.builder()
.topLeftX(375.61096f)
.topLeftY(241.282f)
.width(7.648041f)
.height(43.72262f)
.page(1)
.build(), Rectangle.builder()
.topLeftX(384.83517f)
.topLeftY(241.282f)
.width(7.648041f)
.height(17.043358f)
.page(1)
.build()));
// manualRedactions.getEntriesToAdd().add(manualRedactionEntry);
AnalyzeRequest request = prepareStorage(pdfFileResource.getInputStream());
request.setManualRedactions(manualRedactions);
analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
AnalyzeResult result = analyzeService.analyze(request);
manualRedactions.getEntriesToAdd().add(manualRedactionEntry);
manualRedactions.setIdsToRemove(Set.of(IdRemoval.builder()
.annotationId("5b940b2cb401ed9f5be6fc24f6e77bcf")
.fileId("fileId")
.status(AnnotationStatus.APPROVED)
.requestDate(OffsetDateTime.now())
.processedDate(OffsetDateTime.now())
.build()));
manualRedactions.setLegalBasisChanges((Set.of(ManualLegalBasisChange.builder()
.annotationId("675eba69b0c2917de55462c817adaa05")
.fileId("fileId")
.legalBasis("Manual Legal Basis Change")
.status(AnnotationStatus.APPROVED)
.processedDate(OffsetDateTime.now())
.requestDate(OffsetDateTime.now())
.build())));
manualRedactions.setResizeRedactions(Set.of(ManualResizeRedaction.builder()
.annotationId("fc287b74be2421156ab2895c7474ccdd")
.fileId("fileId")
.processedDate(OffsetDateTime.now())
.requestDate(OffsetDateTime.now())
.value("Syngenta Crop Protection AG, Basel, Switzerland RCC Ltd., Itingen, Switzerland")
.positions(List.of(Rectangle.builder()
.topLeftX(289.44595f)
.topLeftY(327.567f)
.width(7.648041f)
.height(82.51475f)
.page(1)
.build(), Rectangle.builder()
.topLeftX(298.67056f)
.topLeftY(327.567f)
.width(7.648041f)
.height(75.32377f)
.page(1)
.build(), Rectangle.builder()
.topLeftX(307.89517f)
.topLeftY(327.567f)
.width(7.648041f)
.height(61.670967f)
.page(1)
.build(), Rectangle.builder()
.topLeftX(316.99985f)
.topLeftY(327.567f)
.width(7.648041f)
.height(38.104286f)
.page(1)
.build()))
.status(AnnotationStatus.APPROVED)
.build()));
analyzeService.reanalyze(request);
AnnotateResponse annotateResponse = redactionController.annotate(AnnotateRequest.builder()
.dossierId(TEST_DOSSIER_ID)
.fileId(TEST_FILE_ID)
.dossierTemplateId(TEST_DOSSIER_TEMPLATE_ID)
.manualRedactions(manualRedactions)
.build());
try (FileOutputStream fileOutputStream = new FileOutputStream(getTemporaryDirectory() + "/Annotated.pdf")) {
fileOutputStream.write(annotateResponse.getDocument());
}
}
private static String loadFromClassPath(String path) {
URL resource = ResourceLoader.class.getClassLoader().getResource(path);
@@ -1086,4 +1192,14 @@ public class RedactionIntegrationTest {
}
}
private static String getTemporaryDirectory() {
String tmpdir = System.getProperty("java.io.tmpdir");
if (StringUtils.isNotBlank(tmpdir)) {
return tmpdir;
}
return "/tmp";
}
}
@@ -13,6 +13,7 @@ import com.iqser.red.service.redaction.v1.server.tableextraction.service.RulingC
import com.iqser.red.service.redaction.v1.server.tableextraction.service.TableExtractionService;
import org.junit.Ignore;
import org.junit.Test;
import org.junit.platform.commons.util.StringUtils;
import org.junit.runner.RunWith;
import org.kie.api.runtime.KieContainer;
import org.springframework.amqp.rabbit.core.RabbitTemplate;
@@ -95,7 +96,7 @@ public class PdfSegmentationServiceTest {
for (PdfImage image : page.getImages()) {
try (ByteArrayOutputStream baos = new ByteArrayOutputStream()) {
ImageIO.write(image.getImage(), "png", baos);
try (FileOutputStream fileOutputStream = new FileOutputStream("/tmp/Image " + i + ".png")) {
try (FileOutputStream fileOutputStream = new FileOutputStream(getTemporaryDirectory() + "/Image " + i + ".png")) {
fileOutputStream.write(baos.toByteArray());
}
}
@@ -239,4 +240,12 @@ public class PdfSegmentationServiceTest {
.equals(firstTableHeaderCells))).isTrue();
}
private static String getTemporaryDirectory() {
String tmpdir = System.getProperty("java.io.tmpdir");
if (StringUtils.isNotBlank(tmpdir)) {
return tmpdir;
}
return "/tmp";
}
}
@@ -18,3 +18,10 @@ platform.multi-tenancy:
redaction-service:
enable-image-classification: false
enable-entity-recognition: false
storage:
signer-type: 'AWSS3V4SignerType'
bucket-name: 'redaction'
region: 'us-east-1'
endpoint: 'https://s3.amazonaws.com'
backend: 's3'
@@ -0,0 +1,5 @@
Amendment 1
Report Number: 33168
Page
Report Number: BFI0714
Tesh Consultants International