Test old pattern

bamboo-specs/pom.xml

@@ -5,7 +5,7 @@
   <parent>
     <groupId>com.atlassian.bamboo</groupId>
     <artifactId>bamboo-specs-parent</artifactId>
-    <version>8.0.3</version>
+    <version>7.2.2</version>
     <relativePath/>
   </parent>
 

bamboo-specs/src/main/java/buildjob/PlanSpec.java

@@ -1,8 +1,5 @@
 package buildjob;
 
-import java.time.DayOfWeek;
-import java.time.LocalTime;
-
 import com.atlassian.bamboo.specs.api.BambooSpec;
 import com.atlassian.bamboo.specs.api.builders.BambooKey;
 import com.atlassian.bamboo.specs.api.builders.docker.DockerConfiguration;
@@ -22,8 +19,6 @@ import com.atlassian.bamboo.specs.builders.task.ScriptTask;
 import com.atlassian.bamboo.specs.builders.task.VcsCheckoutTask;
 import com.atlassian.bamboo.specs.builders.task.VcsTagTask;
 import com.atlassian.bamboo.specs.builders.trigger.BitbucketServerTrigger;
-import com.atlassian.bamboo.specs.builders.trigger.RepositoryPollingTrigger;
-import com.atlassian.bamboo.specs.builders.trigger.ScheduledTrigger;
 import com.atlassian.bamboo.specs.model.task.InjectVariablesScope;
 import com.atlassian.bamboo.specs.util.BambooServer;
 import com.atlassian.bamboo.specs.builders.task.ScriptTask;
@@ -55,11 +50,6 @@ public class PlanSpec {
         bambooServer.publish(plan);
         PlanPermissions planPermission = new PlanSpec().createPlanPermission(plan.getIdentifier());
         bambooServer.publish(planPermission);
-
-        Plan secPlan = new PlanSpec().createSecBuild();
-        bambooServer.publish(secPlan);
-        PlanPermissions secPlanPermission = new PlanSpec().createPlanPermission(secPlan.getIdentifier());
-        bambooServer.publish(secPlanPermission);
     }
 
     private PlanPermissions createPlanPermission(PlanIdentifier planIdentifier) {
@@ -104,6 +94,11 @@ public class PlanSpec {
                                                 .description("Resultparser")
                                                 .resultDirectories("**/test-reports/*.xml, **/target/surefire-reports/*.xml, **/target/failsafe-reports/*.xml")
                                                 .enabled(true),
+                                        new ScriptTask()
+                                                .description("Sonar")
+                                                .location(Location.FILE)
+                                                .fileFromPath("bamboo-specs/src/main/resources/scripts/sonar-java.sh")
+                                                .argument(SERVICE_NAME),
                                         new InjectVariablesTask()
                                                 .description("Inject git Tag")
                                                 .path("git.tag")
@@ -130,45 +125,4 @@ public class PlanSpec {
                                 .whenInactiveInRepositoryAfterDays(14))
                         .notificationForCommitters());
     }
-
-    public Plan createSecBuild() {
-        return new Plan(
-                project(),
-                SERVICE_NAME + "-Sec", new BambooKey(SERVICE_KEY + "SEC"))
-                .description("Security Analysis Plan")
-                .stages(new Stage("Default Stage")
-                        .jobs(new Job("Default Job",
-                                new BambooKey("JOB1"))
-                                .tasks(
-                                        new ScriptTask()
-                                                .description("Clean")
-                                                .inlineBody("#!/bin/bash\n" +
-                                                        "set -e\n" +
-                                                        "rm -rf ./*"),
-                                        new VcsCheckoutTask()
-                                                .description("Checkout Default Repository")
-                                                .checkoutItems(new CheckoutItem().defaultRepository()),
-                                        new ScriptTask()
-                                                .description("Sonar")
-                                                .location(Location.FILE)
-                                                .fileFromPath("bamboo-specs/src/main/resources/scripts/sonar-java.sh")
-                                                .argument(SERVICE_NAME))
-                                .dockerConfiguration(
-                                        new DockerConfiguration()
-                                                .image("nexus.iqser.com:5001/infra/maven:3.6.2-jdk-13-3.0.0")
-                                                .dockerRunArguments("--net=host")
-                                                .volume("/etc/maven/settings.xml", "/usr/share/maven/ref/settings.xml")
-                                                .volume("/var/run/docker.sock", "/var/run/docker.sock")
-                                )
-                        )
-                )
-                .linkedRepositories("RED / " + SERVICE_NAME)
-                .triggers(
-                        new ScheduledTrigger()
-                                .scheduleOnceDaily(LocalTime.of(12, 00)),
-                        new BitbucketServerTrigger())
-                .planBranchManagement(new PlanBranchManagement()
-                        .createForVcsBranchMatching("release.*")
-                        .notificationForCommitters());
-    }
 }

bamboo-specs/src/test/java/buildjob/PlanSpecTest.java

@@ -11,9 +11,7 @@ public class PlanSpecTest {
     @Test
     public void checkYourPlanOffline() throws PropertiesValidationException {
         Plan plan = new PlanSpec().createPlan();
-        EntityPropertiesBuilders.build(plan);
 
-        Plan secPlan = new PlanSpec().createSecBuild();
-        EntityPropertiesBuilders.build(secPlan);
+        EntityPropertiesBuilders.build(plan);
     }
 }

redaction-service-v1/pom.xml

@@ -13,6 +13,7 @@
     <groupId>com.iqser.red.service</groupId>
     <version>1.0-SNAPSHOT</version>
 
+
     <packaging>pom</packaging>
 
     <modules>

redaction-service-v1/redaction-service-api-v1/pom.xml

@@ -11,10 +11,6 @@
 
     <artifactId>redaction-service-api-v1</artifactId>
 
-    <properties>
-        <persistence-service.version>0.103.0</persistence-service.version>
-    </properties>
-
     <dependencies>
         <dependency>
             <groupId>org.springframework</groupId>
@@ -24,7 +20,7 @@
         <dependency>
             <groupId>com.iqser.red.service</groupId>
             <artifactId>persistence-service-api-v1</artifactId>
-            <version>${persistence-service.version}</version>
+            <version>0.44.0</version>
         </dependency>
     </dependencies>
 </project>

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/AnnotateRequest.java

@@ -1,7 +1,5 @@
 package com.iqser.red.service.redaction.v1.model;
 
-import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactions;
-
 import lombok.AllArgsConstructor;
 import lombok.Builder;
 import lombok.Data;
@@ -16,5 +14,4 @@ public class AnnotateRequest {
     private String dossierId;
     private String dossierTemplateId;
     private String fileId;
-    private ManualRedactions manualRedactions;
 }

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/ManualRedactionType.java

@@ -1,5 +1,5 @@
 package com.iqser.red.service.redaction.v1.model;
 
 public enum ManualRedactionType {
-    ADD, REMOVE, FORCE_REDACT, RECATEGORIZE, LEGAL_BASIS_CHANGE, RESIZE
+    ADD, REMOVE, FORCE_REDACT, RECATEGORIZE, LEGAL_BASIS_CHANGE
 }

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/RedactionLogEntry.java

@@ -30,13 +30,6 @@ public class RedactionLogEntry {
     private boolean redacted;
     private boolean isHint;
     private boolean isRecommendation;
-
-    private boolean hasBeenResized;
-    private boolean hasBeenRecategorized;
-    private boolean hasLegalBasisChanged;
-    private boolean hasBeenForced;
-    private boolean hasBeenRemovedByManualOverride;
-
     private String section;
     private float[] color;
 

redaction-service-v1/redaction-service-api-v1/src/main/java/com/iqser/red/service/redaction/v1/model/SectionGrid.java

@@ -3,9 +3,10 @@ package com.iqser.red.service.redaction.v1.model;
 import lombok.AllArgsConstructor;
 import lombok.Data;
 import lombok.NoArgsConstructor;
-import lombok.RequiredArgsConstructor;
 
-import java.util.*;
+import java.util.HashMap;
+import java.util.List;
+import java.util.Map;
 
 @Data
 @AllArgsConstructor
@@ -14,16 +15,4 @@ public class SectionGrid {
 
     private Map<Integer, List<SectionRectangle>> rectanglesPerPage = new HashMap<>();
 
-    private List<SectionGridSection> sections = new ArrayList<>();
-
-    @Data
-    @RequiredArgsConstructor
-    public static class SectionGridSection {
-
-        private final int sectionNumber;
-        private final String headline;
-        private final Set<Integer> pages;
-        private final List<SectionArea> sectionAreas;
-
-    }
 }

redaction-service-v1/redaction-service-server-v1/pom.xml

@@ -11,14 +11,6 @@
 
     <artifactId>redaction-service-server-v1</artifactId>
 
-    <properties>
-        <drools.version>7.59.0.Final</drools.version>
-        <kie.version>7.59.0.Final</kie.version>
-        <locationtech.version>1.16.1</locationtech.version>
-        <pdfbox.jbig2-imageio.version>3.0.3</pdfbox.jbig2-imageio.version>
-        <jai-imageio.version>1.4.0</jai-imageio.version>
-    </properties>
-
     <dependencies>
         <dependency>
             <groupId>com.iqser.red.commons</groupId>
@@ -32,17 +24,17 @@
         <dependency>
             <groupId>org.drools</groupId>
             <artifactId>drools-core</artifactId>
-            <version>${drools.version}</version>
+            <version>7.59.0.Final</version>
         </dependency>
         <dependency>
             <groupId>org.kie</groupId>
             <artifactId>kie-spring</artifactId>
-            <version>${kie.version}</version>
+            <version>7.59.0.Final</version>
         </dependency>
         <dependency>
             <groupId>org.locationtech.jts</groupId>
             <artifactId>jts-core</artifactId>
-            <version>${locationtech.version}</version>
+            <version>1.16.1</version>
         </dependency>
         <dependency>
             <groupId>com.google.guava</groupId>
@@ -52,17 +44,17 @@
         <dependency>
             <groupId>org.apache.pdfbox</groupId>
             <artifactId>jbig2-imageio</artifactId>
-            <version>${pdfbox.jbig2-imageio.version}</version>
+            <version>3.0.3</version>
         </dependency>
         <dependency>
             <groupId>com.github.jai-imageio</groupId>
             <artifactId>jai-imageio-core</artifactId>
-            <version>${jai-imageio.version}</version>
+            <version>1.4.0</version>
         </dependency>
         <dependency>
             <groupId>com.github.jai-imageio</groupId>
             <artifactId>jai-imageio-jpeg2000</artifactId>
-            <version>${jai-imageio.version}</version>
+            <version>1.4.0</version>
         </dependency>
 
         <!-- commons -->

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/classification/service/BlockificationService.java

@@ -1,7 +1,5 @@
 package com.iqser.red.service.redaction.v1.server.classification.service;
 
-import static java.util.stream.Collectors.toSet;
-
 import com.iqser.red.service.redaction.v1.server.classification.model.FloatFrequencyCounter;
 import com.iqser.red.service.redaction.v1.server.classification.model.Orientation;
 import com.iqser.red.service.redaction.v1.server.classification.model.Page;
@@ -18,7 +16,6 @@ import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
 import org.springframework.stereotype.Service;
 
 import java.util.ArrayList;
-import java.util.Comparator;
 import java.util.Iterator;
 import java.util.List;
 
@@ -28,12 +25,9 @@ public class BlockificationService {
 
     static final float THRESHOLD = 1f;
 
-
     public Page blockify(List<TextPositionSequence> textPositions, List<Ruling> horizontalRulingLines,
                          List<Ruling> verticalRulingLines) {
 
-        sortRotatedSequences(textPositions);
-
         List<TextPositionSequence> chunkWords = new ArrayList<>();
         List<AbstractTextContainer> chunkBlockList1 = new ArrayList<>();
 
@@ -56,7 +50,7 @@ public class BlockificationService {
             if (prev != null && (lineSeparation || startFromTop || splitByX || newLineAfterSplit || splittedByRuling)) {
 
                 Orientation prevOrientation = null;
-                if (!chunkBlockList1.isEmpty()) {
+                if(!chunkBlockList1.isEmpty()) {
                     prevOrientation = chunkBlockList1.get(chunkBlockList1.size() - 1).getOrientation();
                 }
 
@@ -68,11 +62,15 @@ public class BlockificationService {
                     wasSplitted = true;
                     cb1.setOrientation(Orientation.LEFT);
                     splitX1 = word.getX1();
-                } else if (newLineAfterSplit && !splittedByRuling) {
+                } else
+
+                if (newLineAfterSplit && !splittedByRuling) {
                     wasSplitted = false;
                     cb1.setOrientation(Orientation.RIGHT);
                     splitX1 = null;
-                } else if (prevOrientation != null && prevOrientation.equals(Orientation.RIGHT) && (lineSeparation || !startFromTop || !splitByX || !newLineAfterSplit || !splittedByRuling)) {
+                } else
+
+                if(prevOrientation != null && prevOrientation.equals(Orientation.RIGHT) && (lineSeparation || !startFromTop || !splitByX || !newLineAfterSplit || !splittedByRuling)){
                     cb1.setOrientation(Orientation.LEFT);
                 }
 
@@ -112,18 +110,16 @@ public class BlockificationService {
         while (itty.hasNext()) {
             TextBlock block = (TextBlock) itty.next();
 
-            if (previousLeft != null && block.getOrientation().equals(Orientation.LEFT)) {
-                if (previousLeft.getMinY() > block.getMinY() && block.getMaxY() + block.getMostPopularWordHeight() > previousLeft
-                        .getMinY()) {
+            if(previousLeft != null && block.getOrientation().equals(Orientation.LEFT)){
+                if (previousLeft.getMinY() > block.getMinY() && block.getMaxY() + block.getMostPopularWordHeight() > previousLeft.getMinY()){
                     previousLeft.add(block);
                     itty.remove();
                     continue;
                 }
             }
 
-            if (previousRight != null && block.getOrientation().equals(Orientation.RIGHT)) {
-                if (previousRight.getMinY() > block.getMinY() && block.getMaxY() + block.getMostPopularWordHeight() > previousRight
-                        .getMinY()) {
+            if(previousRight != null && block.getOrientation().equals(Orientation.RIGHT)){
+                if (previousRight.getMinY() > block.getMinY() && block.getMaxY() + block.getMostPopularWordHeight() > previousRight.getMinY()){
                     previousRight.add(block);
                     itty.remove();
                     continue;
@@ -137,16 +133,16 @@ public class BlockificationService {
             }
         }
 
+
         itty = chunkBlockList1.iterator();
         TextBlock previous = null;
         while (itty.hasNext()) {
             TextBlock block = (TextBlock) itty.next();
 
-            if (previous != null && previous.getOrientation().equals(Orientation.LEFT) && block.getOrientation()
-                    .equals(Orientation.LEFT) && equalsWithThreshold(block.getMaxY(), previous.getMaxY()) || previous != null && previous
-                    .getOrientation()
-                    .equals(Orientation.LEFT) && block.getOrientation()
-                    .equals(Orientation.RIGHT) && equalsWithThreshold(block.getMaxY(), previous.getMaxY())) {
+            if(previous != null && previous.getOrientation().equals(Orientation.LEFT) && block.getOrientation().equals(Orientation.LEFT) && equalsWithThreshold(block.getMaxY(), previous
+                    .getMaxY())||
+                    previous != null && previous.getOrientation().equals(Orientation.LEFT) && block.getOrientation().equals(Orientation.RIGHT) && equalsWithThreshold(block.getMaxY(), previous
+                    .getMaxY())){
                 previous.add(block);
                 itty.remove();
                 continue;
@@ -155,12 +151,11 @@ public class BlockificationService {
             previous = block;
         }
 
+
         return new Page(chunkBlockList1);
     }
 
-
-    private boolean equalsWithThreshold(float f1, float f2) {
-
+    private boolean equalsWithThreshold(float f1, float f2){
         return Math.abs(f1 - f2) < THRESHOLD;
     }
 
@@ -202,13 +197,6 @@ public class BlockificationService {
             textBlock.setHighestFontSize(fontSizeFrequencyCounter.getHighest());
         }
 
-        if (textBlock != null && textBlock.getSequences() != null && textBlock.getSequences()
-                .stream()
-                .map(t -> round(t.getY1(), 3))
-                .collect(toSet())
-                .size() == 1) {
-            textBlock.getSequences().sort(Comparator.comparing(TextPositionSequence::getX1));
-        }
         return textBlock;
     }
 
@@ -303,30 +291,4 @@ public class BlockificationService {
         return new Rectangle(minY, minX, maxX - minX, maxY - minY);
     }
 
-
-    private void sortRotatedSequences(List<TextPositionSequence> sequences) {
-
-        List<TextPositionSequence> rotatedWords = new ArrayList<>();
-        Iterator<TextPositionSequence> itty = sequences.iterator();
-        while (itty.hasNext()) {
-            var pos = itty.next();
-            if (pos.getTextPositions().get(0).getDir() == 270) {
-                rotatedWords.add(pos);
-                itty.remove();
-            }
-        }
-
-        if (!rotatedWords.isEmpty() && !sequences.isEmpty()) {
-            rotatedWords.sort(Comparator.comparing(TextPositionSequence::getX1));
-        }
-        sequences.addAll(rotatedWords);
-    }
-
-
-    private double round(float value, int decimalPoints) {
-
-        var d = Math.pow(10, decimalPoints);
-        return Math.round(value * d) / d;
-    }
-
 }

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/classification/service/ClassificationService.java

@@ -73,10 +73,8 @@ public class ClassificationService {
             }
         } else if (PositionUtils.isWithinBodyTextFrame(bodyTextFrame, textBlock) && textBlock.getMostPopularWordFontSize() > document
                 .getFontSizeCounter()
-                .getMostPopular() && PositionUtils.getApproxLineCount(textBlock) < 4.9 && (textBlock.getMostPopularWordStyle()
-                .equals("bold") || !document.getFontStyleCounter().getCountPerValue().containsKey("bold") && textBlock.getMostPopularWordFontSize() > document
-                .getFontSizeCounter()
-                .getMostPopular() + 1) && textBlock.getSequences().get(0).getTextPositions().get(0).getFontSizeInPt() >= textBlock.getMostPopularWordFontSize()) {
+                .getMostPopular() && PositionUtils.getApproxLineCount(textBlock) < 4.9 && textBlock.getMostPopularWordStyle()
+                .equals("bold")) {
 
             for (int i = 1; i <= headlineFontSizes.size(); i++) {
                 if (textBlock.getMostPopularWordFontSize() == headlineFontSizes.get(i - 1)) {
@@ -88,7 +86,7 @@ public class ClassificationService {
                 .startsWith("Figure ") && PositionUtils.isWithinBodyTextFrame(bodyTextFrame, textBlock) && textBlock.getMostPopularWordStyle()
                 .equals("bold") && !document.getFontStyleCounter()
                 .getMostPopular()
-                .equals("bold") && PositionUtils.getApproxLineCount(textBlock) < 2.9 && textBlock.getSequences().get(0).getTextPositions().get(0).getFontSizeInPt() >= textBlock.getMostPopularWordFontSize()) {
+                .equals("bold") && PositionUtils.getApproxLineCount(textBlock) < 2.9) {
             textBlock.setClassification("H " + (headlineFontSizes.size() + 1));
             document.setHeadlines(true);
         } else if (PositionUtils.isWithinBodyTextFrame(bodyTextFrame, textBlock) && textBlock.getMostPopularWordFontSize() == document

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/controller/ControllerAdvice.java

@@ -1,7 +1,6 @@
 package com.iqser.red.service.redaction.v1.server.controller;
 
 import com.iqser.red.commons.spring.ErrorMessage;
-import com.iqser.red.service.redaction.v1.server.exception.NotFoundException;
 import com.iqser.red.service.redaction.v1.server.exception.RulesValidationException;
 import lombok.extern.slf4j.Slf4j;
 import org.springframework.http.HttpStatus;
@@ -37,11 +36,4 @@ public class ControllerAdvice {
         return new ErrorMessage(OffsetDateTime.now(), e.getMessage());
     }
 
-    @ResponseBody
-    @ResponseStatus(value = HttpStatus.NOT_FOUND)
-    @ExceptionHandler(value = NotFoundException.class)
-    public ErrorMessage handleFileNotFoundException(NotFoundException e) {
-        return new ErrorMessage(OffsetDateTime.now(), e.getMessage());
-    }
-
 }

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/controller/RedactionController.java

@@ -1,11 +1,11 @@
 package com.iqser.red.service.redaction.v1.server.controller;
 
+import com.amazonaws.services.kms.model.NotFoundException;
 import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.dossier.file.FileType;
 import com.iqser.red.service.redaction.v1.model.*;
 import com.iqser.red.service.redaction.v1.resources.RedactionResource;
 import com.iqser.red.service.redaction.v1.server.classification.model.Document;
 import com.iqser.red.service.redaction.v1.server.classification.model.Page;
-import com.iqser.red.service.redaction.v1.server.exception.NotFoundException;
 import com.iqser.red.service.redaction.v1.server.exception.RedactionException;
 import com.iqser.red.service.redaction.v1.server.redaction.service.AnnotationService;
 import com.iqser.red.service.redaction.v1.server.redaction.service.DictionaryService;
@@ -25,7 +25,6 @@ import org.springframework.web.bind.annotation.RestController;
 
 import java.io.ByteArrayOutputStream;
 import java.io.IOException;
-import java.util.stream.Collectors;
 
 @Slf4j
 @RestController
@@ -43,14 +42,14 @@ public class RedactionController implements RedactionResource {
     public AnnotateResponse annotate(@RequestBody AnnotateRequest annotateRequest) {
 
         var storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(annotateRequest.getDossierId(), annotateRequest.getFileId(), FileType.ORIGIN));
-        var mergedRedactionLog = getRedactionLog(RedactionRequest.builder().fileId(annotateRequest.getFileId()).manualRedactions(annotateRequest.getManualRedactions()).dossierId(annotateRequest.getDossierId()).dossierTemplateId(annotateRequest.getDossierTemplateId()).build());
+        var redactionLog = redactionStorageService.getRedactionLog(annotateRequest.getDossierId(), annotateRequest.getFileId());
         var sectionsGrid = redactionStorageService.getSectionGrid(annotateRequest.getDossierId(), annotateRequest.getFileId());
 
         try (PDDocument pdDocument = PDDocument.load(storedObjectStream, MemoryUsageSetting.setupTempFileOnly())) {
             pdDocument.setAllSecurityToBeRemoved(true);
 
             dictionaryService.updateDictionary(annotateRequest.getDossierTemplateId(), annotateRequest.getDossierId());
-            annotationService.annotate(pdDocument, mergedRedactionLog, sectionsGrid);
+            annotationService.annotate(pdDocument, redactionLog, sectionsGrid);
 
             try (ByteArrayOutputStream byteArrayOutputStream = new ByteArrayOutputStream()) {
                 pdDocument.save(byteArrayOutputStream);
@@ -158,31 +157,12 @@ public class RedactionController implements RedactionResource {
             throw new NotFoundException("RedactionLog not present");
         }
 
-        log.info("Loaded redaction log with computationalVersion: {}", redactionLog.getAnalysisVersion());
-
-        SectionGrid sectionGrid = redactionStorageService.getSectionGrid(redactionRequest.getDossierId(), redactionRequest.getFileId());
-        if (sectionGrid.getSections().isEmpty()) {
-
-            log.info("SectionGrid does not have headlines set. Computing headlines now!");
-            var text = redactionStorageService.getText(redactionRequest.getDossierId(), redactionRequest.getFileId());
-
-            // enhance section grid with headline data
-            for (var sectionText : text.getSectionTexts()) {
-                sectionGrid.getSections().add(new SectionGrid.SectionGridSection(sectionText.getSectionNumber(),
-                        sectionText.getHeadline(),
-                        sectionText.getSectionAreas().stream().map(SectionArea::getPage).collect(Collectors.toSet()),
-                        sectionText.getSectionAreas()));
-            }
-            redactionStorageService.storeObject(redactionRequest.getDossierId(), redactionRequest.getFileId(), FileType.SECTION_GRID, sectionGrid);
-        }
-
-
         log.info("Loaded redaction log with computationalVersion: {}", redactionLog.getAnalysisVersion());
         if (redactionLog.getAnalysisVersion() == 0) {
             // old redaction logs are returned directly
             return redactionLog;
         } else {
-            return redactionLogMergeService.mergeRedactionLogData(redactionLog, sectionGrid, redactionRequest.getDossierTemplateId(), redactionRequest.getManualRedactions(), redactionRequest.getExcludedPages());
+            return redactionLogMergeService.mergeRedactionLogData(redactionLog, redactionRequest.getDossierTemplateId(), redactionRequest.getManualRedactions(), redactionRequest.getExcludedPages());
         }
     }
 

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/exception/NotFoundException.java

@@ -1,9 +0,0 @@
-package com.iqser.red.service.redaction.v1.server.exception;
-
-public class NotFoundException extends RuntimeException {
-
-    public NotFoundException(String message) {
-        super(message);
-    }
-
-}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/parsing/PDFLinesTextStripper.java

@@ -1,33 +1,16 @@
 package com.iqser.red.service.redaction.v1.server.parsing;
 
-import java.awt.geom.Point2D;
-import java.awt.geom.Rectangle2D;
-import java.io.IOException;
-import java.util.ArrayList;
-import java.util.List;
-
+import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
+import com.iqser.red.service.redaction.v1.server.redaction.model.PdfImage;
+import com.iqser.red.service.redaction.v1.server.tableextraction.model.Ruling;
+import lombok.Getter;
+import lombok.Setter;
+import lombok.extern.slf4j.Slf4j;
 import org.apache.commons.lang3.reflect.FieldUtils;
 import org.apache.pdfbox.contentstream.operator.Operator;
 import org.apache.pdfbox.contentstream.operator.OperatorName;
-import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingColor;
-import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingColorN;
-import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingColorSpace;
-import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingDeviceCMYKColor;
-import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingDeviceGrayColor;
-import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingDeviceRGBColor;
-import org.apache.pdfbox.contentstream.operator.color.SetStrokingColor;
-import org.apache.pdfbox.contentstream.operator.color.SetStrokingColorN;
-import org.apache.pdfbox.contentstream.operator.color.SetStrokingColorSpace;
-import org.apache.pdfbox.contentstream.operator.color.SetStrokingDeviceCMYKColor;
-import org.apache.pdfbox.contentstream.operator.color.SetStrokingDeviceGrayColor;
-import org.apache.pdfbox.contentstream.operator.color.SetStrokingDeviceRGBColor;
-import org.apache.pdfbox.contentstream.operator.state.SetFlatness;
-import org.apache.pdfbox.contentstream.operator.state.SetLineCapStyle;
-import org.apache.pdfbox.contentstream.operator.state.SetLineDashPattern;
-import org.apache.pdfbox.contentstream.operator.state.SetLineJoinStyle;
-import org.apache.pdfbox.contentstream.operator.state.SetLineMiterLimit;
-import org.apache.pdfbox.contentstream.operator.state.SetLineWidth;
-import org.apache.pdfbox.contentstream.operator.state.SetRenderingIntent;
+import org.apache.pdfbox.contentstream.operator.color.*;
+import org.apache.pdfbox.contentstream.operator.state.*;
 import org.apache.pdfbox.contentstream.operator.text.SetFontAndSize;
 import org.apache.pdfbox.cos.COSBase;
 import org.apache.pdfbox.cos.COSName;
@@ -40,14 +23,12 @@ import org.apache.pdfbox.text.PDFTextStripper;
 import org.apache.pdfbox.text.TextPosition;
 import org.apache.pdfbox.util.Matrix;
 
-import com.iqser.red.service.redaction.v1.server.parsing.model.RedTextPosition;
-import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
-import com.iqser.red.service.redaction.v1.server.redaction.model.PdfImage;
-import com.iqser.red.service.redaction.v1.server.tableextraction.model.Ruling;
-
-import lombok.Getter;
-import lombok.Setter;
-import lombok.extern.slf4j.Slf4j;
+import java.awt.geom.AffineTransform;
+import java.awt.geom.Point2D;
+import java.awt.geom.Rectangle2D;
+import java.io.IOException;
+import java.util.ArrayList;
+import java.util.List;
 
 @Slf4j
 public class PDFLinesTextStripper extends PDFTextStripper {
@@ -208,19 +189,16 @@ public class PDFLinesTextStripper extends PDFTextStripper {
             COSName objectName = (COSName) arguments.get(0);
             PDXObject xobject = getResources().getXObject(objectName);
             if (xobject instanceof PDImageXObject) {
-                PDImageXObject image = (PDImageXObject) xobject;
+                PDImageXObject image = (PDImageXObject)xobject;
                 Matrix ctmNew = getGraphicsState().getCurrentTransformationMatrix();
 
-                Rectangle2D rect = new Rectangle2D.Float(ctmNew.getTranslateX(), ctmNew.getTranslateY(), ctmNew.getScaleX(), ctmNew
-                        .getScaleY());
+                Rectangle2D rect = new Rectangle2D.Float(ctmNew.getTranslateX(), ctmNew.getTranslateY(), ctmNew.getScaleX(), ctmNew.getScaleY());
 
                 // Memory Hack - sofReference kills me
                 FieldUtils.writeField(image, "cachedImageSubsampling", -1, true);
 
                 if (rect.getHeight() > 2 && rect.getWidth() > 2) {
-                    this.images.add(new PdfImage(image.getImage(), rect, pageNumber, image.getImage()
-                            .getColorModel()
-                            .hasAlpha()));
+                    this.images.add(new PdfImage(image.getImage(), rect, pageNumber, image.getImage().getColorModel().hasAlpha()));
                 }
             }
         } catch (Exception e) {
@@ -229,6 +207,8 @@ public class PDFLinesTextStripper extends PDFTextStripper {
     }
 
 
+
+
     private float floatValue(COSBase value) {
 
         if (value instanceof COSNumber) {
@@ -267,16 +247,8 @@ public class PDFLinesTextStripper extends PDFTextStripper {
     public void writeString(String text, List<TextPosition> textPositions) throws IOException {
 
         int startIndex = 0;
-        RedTextPosition previous = null;
-
         for (int i = 0; i <= textPositions.size() - 1; i++) {
 
-            if (!textPositionSequences.isEmpty()) {
-                previous = textPositionSequences.get(textPositionSequences.size() - 1)
-                        .getTextPositions()
-                        .get(textPositionSequences.get(textPositionSequences.size() - 1).getTextPositions().size() - 1);
-            }
-
             int charWidth = (int) textPositions.get(i).getWidthDirAdj();
             if (charWidth < minCharWidth) {
                 minCharWidth = charWidth;
@@ -295,54 +267,42 @@ public class PDFLinesTextStripper extends PDFTextStripper {
 
             if (i == 0 && (textPositions.get(i).getUnicode().equals(" ") || textPositions.get(i)
                     .getUnicode()
-                    .equals("\u00A0") || textPositions.get(i)
-                    .getUnicode()
-                    .equals("\t"))) {
+                    .equals("\u00A0"))) {
                 startIndex++;
                 continue;
             }
 
             // Strange but sometimes this is happening, for example: Metolachlor2.pdf
-            if (i > 0 && textPositions.get(i).getXDirAdj() < textPositions.get(i - 1).getXDirAdj()) {
+            if (i > 0 && textPositions.get(i).getX() < textPositions.get(i - 1).getX()) {
                 List<TextPosition> sublist = textPositions.subList(startIndex, i);
                 if (!(sublist.isEmpty() || sublist.size() == 1 && (sublist.get(0)
                         .getUnicode()
-                        .equals(" ") || sublist.get(0).getUnicode().equals("\u00A0") || sublist.get(0).getUnicode().equals("\t")))) {
+                        .equals(" ") || sublist.get(0).getUnicode().equals("\u00A0")))) {
                     textPositionSequences.add(new TextPositionSequence(sublist, pageNumber));
                 }
                 startIndex = i;
             }
 
-            if (textPositions.get(i).getRotation() == 0 && i > 0 && textPositions.get(i)
-                    .getX() > textPositions.get(i - 1).getEndX() + 1) {
+
+            if (textPositions.get(i).getRotation() == 0 && i > 0 && textPositions.get(i).getX() > textPositions.get(i - 1).getEndX() + 1) {
                 List<TextPosition> sublist = textPositions.subList(startIndex, i);
                 if (!(sublist.isEmpty() || sublist.size() == 1 && (sublist.get(0)
                         .getUnicode()
-                        .equals(" ") || sublist.get(0).getUnicode().equals("\u00A0") || sublist.get(0).getUnicode().equals("\t")))) {
+                        .equals(" ") || sublist.get(0).getUnicode().equals("\u00A0")))) {
                     textPositionSequences.add(new TextPositionSequence(sublist, pageNumber));
                 }
                 startIndex = i;
             }
 
+
             if (i > 0 && (textPositions.get(i).getUnicode().equals(" ") || textPositions.get(i)
                     .getUnicode()
-                    .equals("\u00A0") || textPositions.get(i)
-                    .getUnicode()
-                    .equals("\t")) && i <= textPositions.size() - 2) {
+                    .equals("\u00A0")) && i <= textPositions.size() - 2) {
                 List<TextPosition> sublist = textPositions.subList(startIndex, i);
                 if (!(sublist.isEmpty() || sublist.size() == 1 && (sublist.get(0)
                         .getUnicode()
-                        .equals(" ") || sublist.get(0).getUnicode().equals("\u00A0") || sublist.get(0).getUnicode().equals("\t")))) {
-
-                    // Remove false sequence ends (whitespaces)
-                    if (previous != null && sublist.get(0).getYDirAdj() == previous.getYDirAdj() && sublist.get(0)
-                            .getXDirAdj() - (previous.getXDirAdj() + previous.getWidthDirAdj()) < 0.01) {
-                        for (TextPosition t : sublist) {
-                            textPositionSequences.get(textPositionSequences.size() - 1).add(t);
-                        }
-                    } else {
-                        textPositionSequences.add(new TextPositionSequence(sublist, pageNumber));
-                    }
+                        .equals(" ") || sublist.get(0).getUnicode().equals("\u00A0")))) {
+                    textPositionSequences.add(new TextPositionSequence(sublist, pageNumber));
                 }
                 startIndex = i + 1;
             }
@@ -351,23 +311,13 @@ public class PDFLinesTextStripper extends PDFTextStripper {
         List<TextPosition> sublist = textPositions.subList(startIndex, textPositions.size());
         if (!sublist.isEmpty() && (sublist.get(sublist.size() - 1)
                 .getUnicode()
-                .equals(" ") || sublist.get(sublist.size() - 1).getUnicode().equals("\u00A0") || sublist.get(sublist.size() - 1).getUnicode().equals("\t"))) {
+                .equals(" ") || sublist.get(sublist.size() - 1).getUnicode().equals("\u00A0"))) {
             sublist = sublist.subList(0, sublist.size() - 1);
         }
-
         if (!(sublist.isEmpty() || sublist.size() == 1 && (sublist.get(0).getUnicode().equals(" ") || sublist.get(0)
                 .getUnicode()
-                .equals("\u00A0") || sublist.get(0)
-                .getUnicode()
-                .equals("\t")))) {
-            if (previous != null && sublist.get(0).getYDirAdj() == previous.getYDirAdj() && sublist.get(0)
-                    .getXDirAdj() - (previous.getXDirAdj() + previous.getWidthDirAdj()) < 0.01) {
-                for (TextPosition t : sublist) {
-                    textPositionSequences.get(textPositionSequences.size() - 1).add(t);
-                }
-            } else {
-                textPositionSequences.add(new TextPositionSequence(sublist, pageNumber));
-            }
+                .equals("\u00A0")))) {
+            textPositionSequences.add(new TextPositionSequence(sublist, pageNumber));
         }
         super.writeString(text);
     }

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/parsing/model/RedTextPosition.java

@@ -21,8 +21,6 @@ public class RedTextPosition {
     private float YDirAdj;
     private float width;
     private float heightDir;
-    private float widthDirAdj;
-    private float dir;
 
     // not used in reanalysis
     @JsonIgnore

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/parsing/model/TextPositionSequence.java

@@ -1,7 +1,5 @@
 package com.iqser.red.service.redaction.v1.server.parsing.model;
 
-import static java.util.stream.Collectors.toSet;
-
 import com.fasterxml.jackson.annotation.JsonIgnore;
 import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
 import com.iqser.red.service.redaction.v1.model.Point;
@@ -138,13 +136,6 @@ public class TextPositionSequence implements CharSequence {
     }
 
 
-    @JsonIgnore
-    public float getRotationAdjustedX() {
-
-        return textPositions.get(0).getXDirAdj();
-    }
-
-
     @JsonIgnore
     public float getY1() {
 
@@ -242,7 +233,7 @@ public class TextPositionSequence implements CharSequence {
         float posYInit;
         float posYEnd;
 
-        if (textPositions.get(0).getRotation() == 90 && textPositions.get(0).getDir() != 0.0f) {
+        if (textPositions.get(0).getRotation() == 90) {
             posXEnd = textPositions.get(0).getYDirAdj() + 2;
             posYInit = getY1();
             posYEnd = textPositions.get(textPositions.size() - 1).getXDirAdj() - height + 4;
@@ -253,31 +244,9 @@ public class TextPositionSequence implements CharSequence {
             posXInit = textPositions.get(0).getPageWidth() - textPositions.get(0).getYDirAdj() - 2;
             posXEnd = textPositions.get(0).getPageWidth() - textPositions.get(textPositions.size() - 1)
                     .getYDirAdj() + height;
-        } else if(textPositions.get(0).getRotation() == 0 && textPositions.get(0).getDir() == 270f) {
-            posYInit = textPositions.get(0).getPageHeight() - getX1();
-            posYEnd = textPositions.get(0).getPageHeight() - getX2() - textPositions.get(0)
-                    .getWidthDirAdj() - textPositions.get(textPositions.size() - 1).getWidthDirAdj() - 3;
-            posXInit = textPositions.get(0).getPageWidth() - textPositions.get(0).getYDirAdj() - 2;
-            posXEnd = textPositions.get(0).getPageWidth() - textPositions.get(textPositions.size() - 1)
-                    .getYDirAdj() + height;
-        } else if(textPositions.get(0).getRotation() == 90 && textPositions.get(0).getDir() == 0.0f){
-            posXInit =  textPositions.get(textPositions.size() - 1)
-                    .getXDirAdj() + textPositions.get(textPositions.size() - 1).getHeightDir();
-            posXEnd = textPositions.get(0).getXDirAdj();
-            posYInit = textPositions.get(0).getPageHeight() - textPositions.get(0).getYDirAdj() - 2;
-            posYEnd = textPositions.get(0).getPageHeight() - textPositions.get(textPositions.size() - 1)
-                    .getYDirAdj() + 2;
-        } else if(textPositions.get(0).getRotation() == 0 && textPositions.get(0).getDir() == 90f){
-            posYInit =  getX1();
-            posYEnd =   getX2() + textPositions.get(0)
-                    .getWidthDirAdj() - textPositions.get(textPositions.size() - 1).getWidthDirAdj() - 3;
-            posXInit =  textPositions.get(0).getYDirAdj() + 2;
-            posXEnd =  textPositions.get(textPositions.size() - 1)
-                    .getYDirAdj() - height;
-        }
-        else {
+        } else {
             posXEnd = textPositions.get(textPositions.size() - 1)
-                    .getXDirAdj() + textPositions.get(textPositions.size() - 1).getWidthDirAdj() + 1;
+                    .getXDirAdj() + textPositions.get(textPositions.size() - 1).getWidth() + 1;
             posYInit = textPositions.get(0).getPageHeight() - textPositions.get(0).getYDirAdj() - 2;
             posYEnd = textPositions.get(0).getPageHeight() - textPositions.get(textPositions.size() - 1)
                     .getYDirAdj() + 2;

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/model/Dictionary.java

@@ -65,13 +65,13 @@ public class Dictionary {
     public boolean containsValue(String type, String value) {
 
         return localAccessMap.containsKey(type) && localAccessMap.get(type)
-                .getValues(false)
+                .getEntries().stream().map(DictionaryEntry::getValue).collect(toSet())
                 .contains(value) || localAccessMap.containsKey(type) && localAccessMap.get(type)
-                .getValues(true)
+                .getLocalEntries()
                 .contains(value) || localAccessMap.containsKey(RECOMMENDATION_PREFIX + type) && localAccessMap.get(RECOMMENDATION_PREFIX + type)
-                .getValues(false)
+                .getEntries().stream().map(DictionaryEntry::getValue).collect(toSet())
                 .contains(value) || localAccessMap.containsKey(RECOMMENDATION_PREFIX + type) && localAccessMap.get(RECOMMENDATION_PREFIX + type)
-                .getValues(true)
+                .getLocalEntries()
                 .contains(value);
     }
 

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/model/Section.java

@@ -131,27 +131,11 @@ public class Section {
         return StringUtils.containsIgnoreCase(headline, word);
     }
 
-
     @ThenAction
     public void expandByRegEx(@Argument(ArgumentType.TYPE) String type,
                               @Argument(ArgumentType.REGEX) String pattern,
                               @Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive,
                               @Argument(ArgumentType.INTEGER) int group) {
-        expandByRegEx(type, pattern, patternCaseInsensitive, group, null);
-    }
-
-    @ThenAction
-    public void expandByRegEx(@Argument(ArgumentType.TYPE) String type,
-                              @Argument(ArgumentType.REGEX) String pattern,
-                              @Argument(ArgumentType.BOOLEAN) boolean patternCaseInsensitive,
-                              @Argument(ArgumentType.INTEGER) int group,
-                              @Argument(ArgumentType.REGEX) String withoutPattern) {
-
-        Pattern compiledWithoutPattern = null;
-
-        if (withoutPattern != null) {
-            compiledWithoutPattern = Patterns.getCompiledPattern(withoutPattern, patternCaseInsensitive);
-        }
 
         Pattern compiledPattern = Patterns.getCompiledPattern(pattern, patternCaseInsensitive);
 
@@ -162,13 +146,6 @@ public class Section {
                 continue;
             }
 
-            if(withoutPattern != null) {
-                Matcher matcherWithout = compiledWithoutPattern.matcher(entity.getWord());
-                if (matcherWithout.find()) {
-                    continue;
-                }
-            }
-
             Matcher matcher = compiledPattern.matcher(entity.getTextAfter());
 
             while (matcher.find()) {

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/service/AnalyzeService.java

@@ -10,12 +10,16 @@ import java.util.stream.Stream;
 
 import com.iqser.red.service.persistence.service.v1.api.model.annotations.*;
 import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.dossier.file.FileType;
-import com.iqser.red.service.redaction.v1.model.*;
-import com.iqser.red.service.redaction.v1.model.Rectangle;
 import org.kie.api.runtime.KieContainer;
 import org.springframework.stereotype.Service;
 import org.springframework.web.bind.annotation.RequestBody;
 
+import com.iqser.red.service.redaction.v1.model.AnalyzeRequest;
+import com.iqser.red.service.redaction.v1.model.AnalyzeResult;
+import com.iqser.red.service.redaction.v1.model.Rectangle;
+import com.iqser.red.service.redaction.v1.model.RedactionLog;
+import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
+import com.iqser.red.service.redaction.v1.model.StructureAnalyzeRequest;
 import com.iqser.red.service.redaction.v1.server.classification.model.Document;
 import com.iqser.red.service.redaction.v1.server.classification.model.SectionText;
 import com.iqser.red.service.redaction.v1.server.classification.model.Text;
@@ -74,15 +78,7 @@ public class AnalyzeService {
         List<SectionText> sectionTexts = sectionTextBuilderService.buildSectionText(classifiedDoc);
         sectionGridCreatorService.createSectionGrid(classifiedDoc, pageCount);
 
-        Text text = new Text(pageCount,sectionTexts);
-
-        // enhance section grid with headline data
-        sectionTexts.forEach(sectionText -> classifiedDoc
-                .getSectionGrid().getSections().add(new SectionGrid.SectionGridSection(sectionText.getSectionNumber(),
-                        sectionText.getHeadline(),
-                        sectionText.getSectionAreas().stream().map(SectionArea::getPage).collect(Collectors.toSet()),
-                        sectionText.getSectionAreas())));
-
+        Text text = new Text(pageCount, sectionTexts);
         redactionStorageService.storeObject(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), FileType.TEXT, text);
         redactionStorageService.storeObject(analyzeRequest.getDossierId(), analyzeRequest.getFileId(), FileType.SECTION_GRID, classifiedDoc
                 .getSectionGrid());

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/service/AnnotationService.java

@@ -169,12 +169,12 @@ public class AnnotationService {
 
     private float[] toQuadPoint(Rectangle rectangle, PDRectangle mediaBox, PDRectangle cropBox) {
 
-        var x1 = rectangle.getTopLeft().getX() + cropBox.getLowerLeftX() - mediaBox.getLowerLeftX() + (cropBox.toString().equals(mediaBox.toString()) ? cropBox.getLowerLeftX() : 0f);
-        var y1 = rectangle.getTopLeft().getY() + (mediaBox.getLowerLeftY() - cropBox.getLowerLeftY()) + (cropBox.toString().equals(mediaBox.toString()) ? cropBox.getLowerLeftY() : 0f);
+        var x1 = rectangle.getTopLeft().getX() + cropBox.getLowerLeftX() - mediaBox.getLowerLeftY();
+        var y1 = rectangle.getTopLeft().getY() + (mediaBox.getLowerLeftY() - cropBox.getLowerLeftY());
         var x2 = rectangle.getTopLeft()
-                .getX() + rectangle.getWidth() + cropBox.getLowerLeftX() - mediaBox.getLowerLeftX() + (cropBox.toString().equals(mediaBox.toString()) ? cropBox.getLowerLeftX() : 0f);
+                .getX() + rectangle.getWidth() + cropBox.getLowerLeftX() - mediaBox.getLowerLeftY();
         var y2 = rectangle.getTopLeft()
-                .getY() + rectangle.getHeight() - (mediaBox.getLowerLeftY() - cropBox.getLowerLeftY()) + (cropBox.toString().equals(mediaBox.toString()) ? cropBox.getLowerLeftY() : 0f);
+                .getY() + rectangle.getHeight() - (mediaBox.getLowerLeftY() - cropBox.getLowerLeftY());
 
         // quadPoints is array of x,y coordinates in Z-like order (top-left, top-right, bottom-left,bottom-right)
         // of the area to be highlighted

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/service/EntityRedactionService.java

@@ -209,18 +209,18 @@ public class EntityRedactionService {
         for (DictionaryModel model : dictionary.getDictionaryModels()) {
             if (model.isCaseInsensitive()) {
                 EntitySearchUtils.addOrAddEngine(found, EntitySearchUtils.find(lowercaseInputString, model.getValues(local), model
-                        .getType(), headline, sectionNumber, !local, model.isDossierDictionary(), local ? Engine.RULE : Engine.DICTIONARY));
+                        .getType(), headline, sectionNumber, !local, model.isDossierDictionary(), Engine.DICTIONARY));
             } else {
                 EntitySearchUtils.addOrAddEngine(found, EntitySearchUtils.find(searchableString, model.getValues(local), model
-                        .getType(), headline, sectionNumber, !local, model.isDossierDictionary(), local ? Engine.RULE : Engine.DICTIONARY));
+                        .getType(), headline, sectionNumber, !local, model.isDossierDictionary(), Engine.DICTIONARY));
             }
         }
 
         if (!local) {
             Map<String, Set<String>> nerValuesPerType = getNerValues(sectionNumber, nerEntities, cellstarts);
             nerValuesPerType.entrySet().forEach(entry -> {
-                EntitySearchUtils.addEntitiesWithHigherRank(found, EntitySearchUtils.find(searchableString, entry.getValue(), entry
-                        .getKey(), headline, sectionNumber, false, false, Engine.NER), dictionary);
+                EntitySearchUtils.addOrAddEngine(found, EntitySearchUtils.find(searchableString, entry.getValue(), entry
+                        .getKey(), headline, sectionNumber, false, false, Engine.NER));
             });
         }
 

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/service/RedactionLogCreatorService.java

@@ -1,15 +1,5 @@
 package com.iqser.red.service.redaction.v1.server.redaction.service;
 
-import java.util.ArrayList;
-import java.util.HashSet;
-import java.util.List;
-import java.util.Map;
-import java.util.Set;
-import java.util.stream.Collectors;
-
-import org.apache.commons.collections4.CollectionUtils;
-import org.springframework.stereotype.Service;
-
 import com.iqser.red.service.redaction.v1.model.Point;
 import com.iqser.red.service.redaction.v1.model.Rectangle;
 import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
@@ -20,20 +10,21 @@ import com.iqser.red.service.redaction.v1.server.redaction.model.EntityPositionS
 import com.iqser.red.service.redaction.v1.server.redaction.model.Image;
 import com.iqser.red.service.redaction.v1.server.redaction.model.PageEntities;
 import com.iqser.red.service.redaction.v1.server.redaction.utils.IdBuilder;
-
 import lombok.RequiredArgsConstructor;
-import lombok.extern.slf4j.Slf4j;
+import org.apache.commons.collections4.CollectionUtils;
+import org.springframework.stereotype.Service;
+
+import java.util.*;
+import java.util.stream.Collectors;
 
 @Service
-@Slf4j
 @RequiredArgsConstructor
 public class RedactionLogCreatorService {
 
     private final DictionaryService dictionaryService;
 
 
-    public List<RedactionLogEntry> createRedactionLog(PageEntities pageEntities, int numberOfPages,
-                                                      String dossierTemplateId) {
+    public List<RedactionLogEntry> createRedactionLog(PageEntities pageEntities, int numberOfPages, String dossierTemplateId) {
 
         List<RedactionLogEntry> entries = new ArrayList<>();
 
@@ -138,27 +129,16 @@ public class RedactionLogCreatorService {
         if (textPositions.size() == 1) {
             rectangles.add(TextPositionSequence.fromData(textPositions, page).getRectangle());
         } else {
-            float x = textPositions.get(0).getXDirAdj();
             float y = textPositions.get(0).getYDirAdj();
-            float width = textPositions.get(0).getWidth();
-            float height = textPositions.get(0).getHeightDir();
             int startIndex = 0;
-
             for (int i = 1; i < textPositions.size(); i++) {
-                float xDirAdj = textPositions.get(i).getXDirAdj();
                 float yDirAdj = textPositions.get(i).getYDirAdj();
-                float widthDir = textPositions.get(i).getWidth();
-                float heightDir = textPositions.get(i).getHeightDir();
-
-                if (!(isCharInSameLine(y, yDirAdj, height, heightDir) && isCharClose(x, xDirAdj, width))) {
+                if (yDirAdj != y) {
                     rectangles.add(TextPositionSequence.fromData(textPositions.subList(startIndex, i), page)
                             .getRectangle());
                     y = yDirAdj;
-                    width = widthDir;
-                    height = heightDir;
                     startIndex = i;
                 }
-                x = xDirAdj;
             }
             if (startIndex != textPositions.size()) {
                 rectangles.add(TextPositionSequence.fromData(textPositions.subList(startIndex, textPositions.size()), page)
@@ -170,34 +150,6 @@ public class RedactionLogCreatorService {
     }
 
 
-    private boolean isCharClose(float x, float xDirAdj, float width) {
-
-        float max = x + (5 * width);
-        if (xDirAdj < max) {
-            return true;
-        }
-        return false;
-    }
-
-
-    private boolean isCharInSameLine(float y, float yCompare, float height, float heightCompare) {
-
-        float offsetHeight = height / 2;
-        float minHeight = height - offsetHeight;
-        float maxHeight = height + offsetHeight;
-
-        float offsetY = height / 10;
-        float minY = y - offsetY;
-        float maxY = y + offsetY;
-
-        if (yCompare > minY && yCompare < maxY && heightCompare > minHeight && heightCompare < maxHeight) {
-            return true;
-        }
-
-        return false;
-    }
-
-
     private RedactionLogEntry createRedactionLogEntry(Entity entity, String dossierTemplateId) {
 
         Set<String> referenceIds = new HashSet<>();
@@ -247,4 +199,5 @@ public class RedactionLogCreatorService {
         return dictionaryService.isRecommendation(type, dossierTemplateId);
     }
 
+
 }

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/service/RedactionLogMergeService.java

@@ -1,17 +1,27 @@
 package com.iqser.red.service.redaction.v1.server.redaction.service;
 
+import java.time.OffsetDateTime;
+import java.util.ArrayList;
+import java.util.Collections;
+import java.util.List;
+import java.util.Map;
+import java.util.Set;
+import java.util.stream.Collectors;
+
 import com.iqser.red.service.persistence.service.v1.api.model.annotations.*;
+import org.springframework.stereotype.Service;
+
+import com.iqser.red.service.redaction.v1.model.ManualRedactionType;
+import com.iqser.red.service.redaction.v1.model.Point;
 import com.iqser.red.service.redaction.v1.model.Rectangle;
-import com.iqser.red.service.redaction.v1.model.*;
+import com.iqser.red.service.redaction.v1.model.RedactionLog;
+import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
+import com.iqser.red.service.redaction.v1.server.redaction.utils.IdBuilder;
+
 import lombok.AllArgsConstructor;
 import lombok.Data;
 import lombok.RequiredArgsConstructor;
 import lombok.extern.slf4j.Slf4j;
-import org.springframework.stereotype.Service;
-
-import java.time.OffsetDateTime;
-import java.util.*;
-import java.util.stream.Collectors;
 
 @Slf4j
 @Service
@@ -20,16 +30,14 @@ public class RedactionLogMergeService {
 
     private final DictionaryService dictionaryService;
 
-    private final SectionTextService sectionTextService;
 
-
-    public RedactionLog mergeRedactionLogData(RedactionLog redactionLog, SectionGrid sectionGrid, String dossierTemplateId,
+    public RedactionLog mergeRedactionLogData(RedactionLog redactionLog, String dossierTemplateId,
                                               ManualRedactions manualRedactions, Set<Integer> excludedPages) {
 
         log.info("Merging Redaction log with manual redactions");
         if (manualRedactions != null) {
 
-            var manualRedactionLogEntries = addManualAddEntries(sectionGrid, manualRedactions.getEntriesToAdd(), manualRedactions.getComments(), dossierTemplateId);
+            var manualRedactionLogEntries = addManualAddEntries(manualRedactions.getEntriesToAdd(), manualRedactions.getComments(), dossierTemplateId);
 
             redactionLog.getRedactionLogEntry().addAll(manualRedactionLogEntries);
 
@@ -45,7 +53,7 @@ public class RedactionLogMergeService {
 
                 if (excludedPages != null && !excludedPages.isEmpty()) {
                     entry.getPositions().forEach(pos -> {
-                        if (!entry.isManual() && excludedPages.contains(pos.getPage())) {
+                        if (excludedPages.contains(pos.getPage())) {
                             entry.setExcluded(true);
                         }
                     });
@@ -86,12 +94,6 @@ public class RedactionLogMergeService {
             }
         });
 
-        manualRedactions.getResizeRedactions().forEach(item -> {
-            if (item.getSoftDeletedTime() == null) {
-                manualRedactionWrappers.add(new ManualRedactionWrapper(item.getAnnotationId(), item.getRequestDate(), item));
-            }
-        });
-
         Collections.sort(manualRedactionWrappers);
 
         return manualRedactionWrappers;
@@ -109,8 +111,6 @@ public class RedactionLogMergeService {
                 if (imageRecategorization.getStatus().equals(AnnotationStatus.APPROVED)) {
                     redactionLogEntry.setStatus(AnnotationStatus.APPROVED);
                     redactionLogEntry.setType(imageRecategorization.getType());
-                    redactionLogEntry.setHasBeenRecategorized(true);
-                    redactionLogEntry.setSection("Image:" + redactionLogEntry.getType());
                     manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", recategorized by manual override");
                 } else if (imageRecategorization.getStatus().equals(AnnotationStatus.REQUESTED)) {
                     manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", requested to recategorize");
@@ -137,7 +137,6 @@ public class RedactionLogMergeService {
                     manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", removed by manual override");
                     redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), dossierTemplateId, false, redactionLogEntry
                             .isRedacted(), true));
-                    redactionLogEntry.setHasBeenRemovedByManualOverride(true);
                 } else if (manualRemoval.getStatus().equals(AnnotationStatus.REQUESTED)) {
                     manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", requested to remove");
                     redactionLogEntry.setStatus(AnnotationStatus.REQUESTED);
@@ -164,7 +163,6 @@ public class RedactionLogMergeService {
                     redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), dossierTemplateId, false, redactionLogEntry
                             .isRedacted(), false));
                     manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", forced by manual override");
-                    redactionLogEntry.setHasBeenForced(true);
                     redactionLogEntry.setLegalBasis(manualForceRedact.getLegalBasis());
                 } else if (manualForceRedact.getStatus().equals(AnnotationStatus.REQUESTED)) {
                     manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", requested to force redact");
@@ -190,11 +188,6 @@ public class RedactionLogMergeService {
                     redactionLogEntry.setStatus(AnnotationStatus.APPROVED);
                     manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", legal basis was manually changed");
                     redactionLogEntry.setLegalBasis(manualLegalBasisChange.getLegalBasis());
-                    redactionLogEntry.setRedacted(true);
-                    redactionLogEntry.setHasLegalBasisChanged(true);
-                    if (manualLegalBasisChange.getSection() != null) {
-                        redactionLogEntry.setSection(manualLegalBasisChange.getSection());
-                    }
                 } else if (manualLegalBasisChange.getStatus().equals(AnnotationStatus.REQUESTED)) {
                     manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", legal basis change requested");
                     redactionLogEntry.setStatus(AnnotationStatus.REQUESTED);
@@ -211,34 +204,6 @@ public class RedactionLogMergeService {
                 redactionLogEntry.setManualRedactionType(ManualRedactionType.LEGAL_BASIS_CHANGE);
             }
 
-            if (mrw.getItem() instanceof ManualResizeRedaction) {
-                var manualResizeRedact = (ManualResizeRedaction) mrw.getItem();
-                String manualOverrideReason = null;
-                if (manualResizeRedact.getStatus().equals(AnnotationStatus.APPROVED)) {
-                    redactionLogEntry.setStatus(AnnotationStatus.APPROVED);
-                    redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), dossierTemplateId, false, redactionLogEntry
-                            .isRedacted(), false));
-                    redactionLogEntry.setPositions(convertPositions(manualResizeRedact.getPositions()));
-                    redactionLogEntry.setValue(manualResizeRedact.getValue());
-                    redactionLogEntry.setHasBeenResized(true);
-                    manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", resized by manual override");
-                } else if (manualResizeRedact.getStatus().equals(AnnotationStatus.REQUESTED)) {
-                    manualOverrideReason = mergeReasonIfNecessary(redactionLogEntry.getReason(), ", requested to resize redact");
-                    redactionLogEntry.setStatus(AnnotationStatus.REQUESTED);
-                    redactionLogEntry.setColor(getColor(redactionLogEntry.getType(), dossierTemplateId, true, redactionLogEntry
-                            .isRedacted(), false));
-                    redactionLogEntry.setPositions(convertPositions(manualResizeRedact.getPositions()));
-                } else {
-                    redactionLogEntry.setStatus(AnnotationStatus.DECLINED);
-                }
-
-                redactionLogEntry.setManualRedactionUserId(manualResizeRedact.getUser());
-                redactionLogEntry.setReason(manualOverrideReason);
-                redactionLogEntry.setManual(true);
-                redactionLogEntry.setManualRedactionType(ManualRedactionType.RESIZE);
-
-            }
-
         });
 
     }
@@ -257,7 +222,7 @@ public class RedactionLogMergeService {
     }
 
 
-    public List<RedactionLogEntry> addManualAddEntries(SectionGrid sectionGrid, Set<ManualRedactionEntry> manualAdds,
+    public List<RedactionLogEntry> addManualAddEntries(Set<ManualRedactionEntry> manualAdds,
                                                        Map<String, List<Comment>> comments, String dossierTemplateId) {
 
         List<RedactionLogEntry> redactionLogEntries = new ArrayList<>();
@@ -268,9 +233,6 @@ public class RedactionLogMergeService {
                 RedactionLogEntry redactionLogEntry = createRedactionLogEntry(manualRedactionEntry, manualRedactionEntry.getAnnotationId(), dossierTemplateId);
                 redactionLogEntry.setPositions(convertPositions(manualRedactionEntry.getPositions()));
                 redactionLogEntry.setComments(comments.get(manualRedactionEntry.getAnnotationId()));
-
-                sectionTextService.handleSectionText(sectionGrid, redactionLogEntry);
-
                 redactionLogEntries.add(redactionLogEntry);
             }
         }
@@ -278,8 +240,8 @@ public class RedactionLogMergeService {
         return redactionLogEntries;
     }
 
-    private List<Rectangle> convertPositions(List<com.iqser.red.service.persistence.service.v1.api.model.annotations.Rectangle> positions) {
-        return positions.stream().map(pos -> new Rectangle(new Point(pos.getTopLeftX(), pos.getTopLeftY()), pos.getWidth(), pos
+    private List<Rectangle> convertPositions(List<com.iqser.red.service.persistence.service.v1.api.model.annotations.Rectangle> positions){
+       return positions.stream().map(pos -> new Rectangle(new Point(pos.getTopLeftX(), pos.getTopLeftY()), pos.getWidth(), pos
                 .getHeight(), pos.getPage())).collect(Collectors.toList());
     }
 
@@ -302,10 +264,10 @@ public class RedactionLogMergeService {
                 .isDossierDictionaryEntry(manualRedactionEntry.isAddToDossierDictionary())
                 .legalBasis(manualRedactionEntry.getLegalBasis())
                 .value(manualRedactionEntry.getValue())
-                .section(manualRedactionEntry.getSection())
                 .type(manualRedactionEntry.getType())
                 .redacted(true)
                 .isHint(false)
+                .section(null)
                 .sectionNumber(-1)
                 .manual(true)
                 .status(manualRedactionEntry.getStatus())

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/service/SectionTextService.java

@@ -1,39 +0,0 @@
-package com.iqser.red.service.redaction.v1.server.redaction.service;
-
-import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
-import com.iqser.red.service.redaction.v1.model.SectionGrid;
-import lombok.extern.slf4j.Slf4j;
-import org.springframework.stereotype.Service;
-
-@Slf4j
-@Service
-public class SectionTextService {
-
-
-    public void handleSectionText(SectionGrid sectionGrid, RedactionLogEntry redactionLogEntry) {
-
-        if (redactionLogEntry.getSection() != null) {
-            // set by UI
-            return;
-        }
-
-        if (sectionGrid != null) {
-            var firstPosition = !redactionLogEntry.getPositions().isEmpty() ? redactionLogEntry.getPositions().iterator().next() : null;
-
-            if (firstPosition != null) {
-
-                for (var section : sectionGrid.getSections()) {
-                    if (section.getPages().contains(firstPosition.getPage())) {
-                        for (var sectionArea : section.getSectionAreas()) {
-                            if (sectionArea.contains(firstPosition)) {
-                                redactionLogEntry.setSection(section.getHeadline());
-                                redactionLogEntry.setSectionNumber(section.getSectionNumber());
-                                return;
-                            }
-                        }
-                    }
-                }
-            }
-        }
-    }
-}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/utils/EntitySearchUtils.java

@@ -146,11 +146,11 @@ public class EntitySearchUtils {
             }
             var existing = existingOptional.get();
 
-            if(existing.getType().equals(found.getType())){
-                existing.getEngines().addAll(found.getEngines());
-            } else if (dictionary.getDictionaryRank(existing.getType()) <= dictionary.getDictionaryRank(found.getType())){
+            if (dictionary.getDictionaryRank(existing.getType()) <= dictionary.getDictionaryRank(found.getType())) {
                 entities.remove(found);
                 entities.add(found);
+            } else {
+                existing.getEngines().addAll(found.getEngines());
             }
         } else {
             entities.add(found);

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/redaction/utils/Patterns.java

@@ -11,7 +11,8 @@ public class Patterns {
 
     public static Map<String, Pattern> patternCache = new HashMap<>();
 
-    public static Pattern AUTHOR_TABLE_SPITTER = Pattern.compile("(((((di)|(van)) )|[A-Z]’)?[A-ZÄÖÜ][\\wäöüéèê]{2,500}( ?[A-ZÄÖÜ]{1,2}\\.){1,3})|(((((di)|(van)) )|[A-Z]’)?[A-ZÄÖÜ][\\wäöüéèê]{2,500}( ?[A-ZÄÖÜ]{1,2} ){1,3})");
+    public static Pattern AUTHOR_TABLE_SPITTER = Pattern.compile("((((di)|(van)) )|[A-Z]’)?[A-ZÄÖÜ][\\wäöüéèê]{2,}( ?[A-ZÄÖÜ]{1,2}\\.)+|((((di)|(van)) )|[A-Z]’)?[A-ZÄÖÜ][\\wäöüéèê]{2,}( ?[A-ZÄÖÜ]{1,2} )+");
+
 
     public Pattern getCompiledPattern(String pattern, boolean caseInsensitive) {
 

redaction-service-v1/redaction-service-server-v1/src/test/java/com/iqser/red/service/redaction/v1/server/RedactionIntegrationTest.java

@@ -1,28 +1,29 @@
 package com.iqser.red.service.redaction.v1.server;
 
-import static org.assertj.core.api.Assertions.assertThat;
-import static org.mockito.Mockito.when;
-
-import java.io.BufferedReader;
-import java.io.ByteArrayInputStream;
-import java.io.File;
-import java.io.FileInputStream;
-import java.io.FileOutputStream;
-import java.io.IOException;
-import java.io.InputStream;
-import java.io.InputStreamReader;
-import java.net.URL;
-import java.nio.charset.StandardCharsets;
-import java.time.OffsetDateTime;
-import java.util.ArrayList;
-import java.util.HashMap;
-import java.util.HashSet;
-import java.util.List;
-import java.util.Map;
-import java.util.Set;
-import java.util.UUID;
-import java.util.stream.Collectors;
-
+import com.amazonaws.services.s3.AmazonS3;
+import com.fasterxml.jackson.databind.ObjectMapper;
+import com.iqser.red.service.persistence.service.v1.api.model.annotations.Rectangle;
+import com.iqser.red.service.persistence.service.v1.api.model.annotations.*;
+import com.iqser.red.service.persistence.service.v1.api.model.common.JSONPrimitive;
+import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.configuration.Colors;
+import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.dossier.file.FileType;
+import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.type.DictionaryEntry;
+import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.type.Type;
+import com.iqser.red.service.redaction.v1.model.*;
+import com.iqser.red.service.redaction.v1.server.classification.model.SectionText;
+import com.iqser.red.service.redaction.v1.server.client.DictionaryClient;
+import com.iqser.red.service.redaction.v1.server.client.ImageClassificationClient;
+import com.iqser.red.service.redaction.v1.server.client.LegalBasisClient;
+import com.iqser.red.service.redaction.v1.server.client.RulesClient;
+import com.iqser.red.service.redaction.v1.server.controller.RedactionController;
+import com.iqser.red.service.redaction.v1.server.memory.MemoryStats;
+import com.iqser.red.service.redaction.v1.server.redaction.service.AnalyzeService;
+import com.iqser.red.service.redaction.v1.server.redaction.utils.ResourceLoader;
+import com.iqser.red.service.redaction.v1.server.redaction.utils.TextNormalizationUtilities;
+import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
+import com.iqser.red.storage.commons.StorageAutoConfiguration;
+import com.iqser.red.storage.commons.service.StorageService;
+import lombok.SneakyThrows;
 import org.apache.commons.io.IOUtils;
 import org.apache.commons.lang3.StringUtils;
 import org.junit.After;
@@ -48,47 +49,15 @@ import org.springframework.context.annotation.Primary;
 import org.springframework.core.io.ClassPathResource;
 import org.springframework.test.context.junit4.SpringRunner;
 
-import com.amazonaws.services.s3.AmazonS3;
-import com.fasterxml.jackson.databind.ObjectMapper;
-import com.iqser.red.service.persistence.service.v1.api.model.annotations.AnnotationStatus;
-import com.iqser.red.service.persistence.service.v1.api.model.annotations.Comment;
-import com.iqser.red.service.persistence.service.v1.api.model.annotations.IdRemoval;
-import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualForceRedaction;
-import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualImageRecategorization;
-import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualLegalBasisChange;
-import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactionEntry;
-import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualRedactions;
-import com.iqser.red.service.persistence.service.v1.api.model.annotations.ManualResizeRedaction;
-import com.iqser.red.service.persistence.service.v1.api.model.annotations.Rectangle;
-import com.iqser.red.service.persistence.service.v1.api.model.common.JSONPrimitive;
-import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.configuration.Colors;
-import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.dossier.file.FileType;
-import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.type.DictionaryEntry;
-import com.iqser.red.service.persistence.service.v1.api.model.dossiertemplate.type.Type;
-import com.iqser.red.service.redaction.v1.model.AnalyzeRequest;
-import com.iqser.red.service.redaction.v1.model.AnalyzeResult;
-import com.iqser.red.service.redaction.v1.model.AnnotateRequest;
-import com.iqser.red.service.redaction.v1.model.AnnotateResponse;
-import com.iqser.red.service.redaction.v1.model.FileAttribute;
-import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
-import com.iqser.red.service.redaction.v1.model.RedactionRequest;
-import com.iqser.red.service.redaction.v1.model.RedactionResult;
-import com.iqser.red.service.redaction.v1.model.StructureAnalyzeRequest;
-import com.iqser.red.service.redaction.v1.server.classification.model.SectionText;
-import com.iqser.red.service.redaction.v1.server.client.DictionaryClient;
-import com.iqser.red.service.redaction.v1.server.client.ImageClassificationClient;
-import com.iqser.red.service.redaction.v1.server.client.LegalBasisClient;
-import com.iqser.red.service.redaction.v1.server.client.RulesClient;
-import com.iqser.red.service.redaction.v1.server.controller.RedactionController;
-import com.iqser.red.service.redaction.v1.server.memory.MemoryStats;
-import com.iqser.red.service.redaction.v1.server.redaction.service.AnalyzeService;
-import com.iqser.red.service.redaction.v1.server.redaction.utils.ResourceLoader;
-import com.iqser.red.service.redaction.v1.server.redaction.utils.TextNormalizationUtilities;
-import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
-import com.iqser.red.storage.commons.StorageAutoConfiguration;
-import com.iqser.red.storage.commons.service.StorageService;
+import java.io.*;
+import java.net.URL;
+import java.nio.charset.StandardCharsets;
+import java.time.OffsetDateTime;
+import java.util.*;
+import java.util.stream.Collectors;
 
-import lombok.SneakyThrows;
+import static org.assertj.core.api.Assertions.assertThat;
+import static org.mockito.Mockito.when;
 
 @RunWith(SpringRunner.class)
 @SpringBootTest(classes = Application.class, webEnvironment = SpringBootTest.WebEnvironment.RANDOM_PORT)
@@ -232,26 +201,42 @@ public class RedactionIntegrationTest {
                 .rank(rankTypeMap.get(DOSSIER_REDACTIONS))
                 .build()));
 
-        when(dictionaryClient.getDictionaryForType(VERTEBRATE + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(VERTEBRATE, false));
-        when(dictionaryClient.getDictionaryForType(ADDRESS + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(ADDRESS, false));
-        when(dictionaryClient.getDictionaryForType(AUTHOR + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(AUTHOR, false));
-        when(dictionaryClient.getDictionaryForType(SPONSOR + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(SPONSOR, false));
-        when(dictionaryClient.getDictionaryForType(NO_REDACTION_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(NO_REDACTION_INDICATOR, false));
-        when(dictionaryClient.getDictionaryForType(REDACTION_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(REDACTION_INDICATOR, false));
-        when(dictionaryClient.getDictionaryForType(HINT_ONLY + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(HINT_ONLY, false));
-        when(dictionaryClient.getDictionaryForType(MUST_REDACT + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(MUST_REDACT, false));
-        when(dictionaryClient.getDictionaryForType(PUBLISHED_INFORMATION + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(PUBLISHED_INFORMATION, false));
-        when(dictionaryClient.getDictionaryForType(TEST_METHOD + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(TEST_METHOD, false));
+        when(dictionaryClient.getDictionaryForType(VERTEBRATE + ":" + TEST_DOSSIER_TEMPLATE_ID))
+                .thenReturn(getDictionaryResponse(VERTEBRATE, false));
+        when(dictionaryClient.getDictionaryForType(ADDRESS + ":" + TEST_DOSSIER_TEMPLATE_ID))
+                .thenReturn(getDictionaryResponse(ADDRESS, false));
+        when(dictionaryClient.getDictionaryForType(AUTHOR + ":" + TEST_DOSSIER_TEMPLATE_ID))
+                .thenReturn(getDictionaryResponse(AUTHOR, false));
+        when(dictionaryClient.getDictionaryForType(SPONSOR + ":" + TEST_DOSSIER_TEMPLATE_ID))
+                .thenReturn(getDictionaryResponse(SPONSOR, false));
+        when(dictionaryClient.getDictionaryForType(NO_REDACTION_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID))
+                .thenReturn(getDictionaryResponse(NO_REDACTION_INDICATOR, false));
+        when(dictionaryClient.getDictionaryForType(REDACTION_INDICATOR + ":" + TEST_DOSSIER_TEMPLATE_ID))
+                .thenReturn(getDictionaryResponse(REDACTION_INDICATOR, false));
+        when(dictionaryClient.getDictionaryForType(HINT_ONLY + ":" + TEST_DOSSIER_TEMPLATE_ID))
+                .thenReturn(getDictionaryResponse(HINT_ONLY, false));
+        when(dictionaryClient.getDictionaryForType(MUST_REDACT + ":" + TEST_DOSSIER_TEMPLATE_ID))
+                .thenReturn(getDictionaryResponse(MUST_REDACT, false));
+        when(dictionaryClient.getDictionaryForType(PUBLISHED_INFORMATION + ":" + TEST_DOSSIER_TEMPLATE_ID))
+                .thenReturn(getDictionaryResponse(PUBLISHED_INFORMATION, false));
+        when(dictionaryClient.getDictionaryForType(TEST_METHOD + ":" + TEST_DOSSIER_TEMPLATE_ID))
+                .thenReturn(getDictionaryResponse(TEST_METHOD, false));
         when(dictionaryClient.getDictionaryForType(PII + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(PII, false));
-        when(dictionaryClient.getDictionaryForType(RECOMMENDATION_AUTHOR + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(RECOMMENDATION_AUTHOR, false));
-        when(dictionaryClient.getDictionaryForType(RECOMMENDATION_ADDRESS + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(RECOMMENDATION_ADDRESS, false));
-        when(dictionaryClient.getDictionaryForType(FALSE_POSITIVE + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(FALSE_POSITIVE, false));
-        when(dictionaryClient.getDictionaryForType(PURITY + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(PURITY, false));
+        when(dictionaryClient.getDictionaryForType(RECOMMENDATION_AUTHOR + ":" + TEST_DOSSIER_TEMPLATE_ID))
+                .thenReturn(getDictionaryResponse(RECOMMENDATION_AUTHOR, false));
+        when(dictionaryClient.getDictionaryForType(RECOMMENDATION_ADDRESS + ":" + TEST_DOSSIER_TEMPLATE_ID))
+                .thenReturn(getDictionaryResponse(RECOMMENDATION_ADDRESS, false));
+        when(dictionaryClient.getDictionaryForType(FALSE_POSITIVE + ":" + TEST_DOSSIER_TEMPLATE_ID))
+                .thenReturn(getDictionaryResponse(FALSE_POSITIVE, false));
+        when(dictionaryClient.getDictionaryForType(PURITY + ":" + TEST_DOSSIER_TEMPLATE_ID))
+                .thenReturn(getDictionaryResponse(PURITY, false));
         when(dictionaryClient.getDictionaryForType(IMAGE + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(IMAGE, false));
         when(dictionaryClient.getDictionaryForType(OCR + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(OCR, false));
         when(dictionaryClient.getDictionaryForType(LOGO + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(LOGO, false));
-        when(dictionaryClient.getDictionaryForType(SIGNATURE + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(SIGNATURE, false));
-        when(dictionaryClient.getDictionaryForType(FORMULA + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(FORMULA, false));
+        when(dictionaryClient.getDictionaryForType(SIGNATURE + ":" + TEST_DOSSIER_TEMPLATE_ID))
+                .thenReturn(getDictionaryResponse(SIGNATURE, false));
+        when(dictionaryClient.getDictionaryForType(FORMULA + ":" + TEST_DOSSIER_TEMPLATE_ID))
+                .thenReturn(getDictionaryResponse(FORMULA, false));
         when(dictionaryClient.getDictionaryForType(DOSSIER_REDACTIONS + ":" + TEST_DOSSIER_TEMPLATE_ID)).thenReturn(getDictionaryResponse(DOSSIER_REDACTIONS, true));
         when(dictionaryClient.getColors(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(colors);
     }
@@ -515,7 +500,8 @@ public class RedactionIntegrationTest {
         return Type.builder()
                 .id(type + ":" + TEST_DOSSIER_TEMPLATE_ID)
                 .hexColor(typeColorMap.get(type))
-                .entries(isDossierDictionary ? toDictionaryEntry(dossierDictionary.get(type)) : toDictionaryEntry(dictionary.get(type)))
+                .entries(isDossierDictionary ? toDictionaryEntry(dossierDictionary.get(type)) : toDictionaryEntry(dictionary
+                        .get(type)))
                 .isHint(hintTypeMap.get(type))
                 .isCaseInsensitive(caseInSensitiveMap.get(type))
                 .isRecommendation(recommendationTypeMap.get(type))
@@ -531,8 +517,7 @@ public class RedactionIntegrationTest {
             dictionaryEntries.add(DictionaryEntry.builder()
                     .value(entry)
                     .version(reanlysisVersions.getOrDefault(entry, 0L))
-                    .deleted(deleted.contains(entry))
-                    .build());
+                    .deleted(deleted.contains(entry)).build());
         });
         return dictionaryEntries;
     }
@@ -660,131 +645,29 @@ public class RedactionIntegrationTest {
     }
 
 
-    @Test
-    public void redactionTestSeparatedRedaction() throws IOException {
+    private List<File> getPathsRecursively(File path) {
 
-        String fileName = "scanned/VV-380943_page38.pdf";
-        String outputFileName = getTemporaryDirectory() + "/AnnotatedRedactionTestSeparatedRedaction.pdf";
-
-        long start = System.currentTimeMillis();
-        ClassPathResource pdfFileResource = new ClassPathResource(fileName);
-        AnalyzeRequest request = prepareStorage(pdfFileResource.getInputStream());
-        request.setExcludedPages(Set.of(1));
-
-        request.setFileAttributes(List.of(FileAttribute.builder()
-                .id("fileAttributeId")
-                .label("Vertebrate Study")
-                .placeholder("{fileattributes.vertebrateStudy}")
-                .value("true")
-                .build()));
-
-        analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
-        AnalyzeResult result = analyzeService.analyze(request);
-
-        var redactionLog = redactionStorageService.getRedactionLog(TEST_DOSSIER_ID, TEST_FILE_ID);
-        var text = redactionStorageService.getText(TEST_DOSSIER_ID, TEST_FILE_ID);
-
-        long end = System.currentTimeMillis();
-
-        System.out.println("first analysis duration: " + (end - start));
-
-        try (FileOutputStream fileOutputStream = new FileOutputStream(getTemporaryDirectory() + "/Test.json")) {
-            fileOutputStream.write(objectMapper.writeValueAsBytes(redactionStorageService.getText(TEST_DOSSIER_ID, TEST_FILE_ID)));
+        List<File> result = new ArrayList<>();
+        if (path == null || path.listFiles() == null) {
+            return result;
         }
-
-        int correctFound = 0;
-        loop:
-        for (RedactionLogEntry redactionLogEntry : redactionLog.getRedactionLogEntry()) {
-            for (SectionText sectionText : text.getSectionTexts()) {
-                if (redactionLogEntry.isImage()) {
-                    correctFound++;
-                    continue loop;
-                }
-                if (redactionLogEntry.getSectionNumber() == sectionText.getSectionNumber()) {
-                    String value = sectionText.getText()
-                            .substring(redactionLogEntry.getStartOffset(), redactionLogEntry.getEndOffset());
-                    if (redactionLogEntry.getValue().equalsIgnoreCase(value)) {
-                        correctFound++;
-                    } else {
-                        throw new RuntimeException("WTF");
-                    }
-                }
+        for (File f : path.listFiles()) {
+            if (f.isFile()) {
+                result.add(f);
+            } else {
+                result.addAll(getPathsRecursively(f));
             }
         }
-        assertThat(correctFound).isEqualTo(redactionLog.getRedactionLogEntry().size());
+        return result;
 
-        dictionary.get(AUTHOR).add("properties");
-        reanlysisVersions.put("properties", 1L);
-
-        dictionary.get(AUTHOR).add("physical");
-        reanlysisVersions.put("physical", 2L);
-
-        deleted.add("David Chubb");
-        deleted.add("mouse");
-
-        dictionary.get(FALSE_POSITIVE).add("David Chubb");
-        reanlysisVersions.put("David Chubb", 3L);
-
-        reanlysisVersions.put("mouse", 3L);
-
-        when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(3L);
-
-        when(dictionaryClient.getDictionaryForType(VERTEBRATE)).thenReturn(getDictionaryResponse(VERTEBRATE, false));
-
-        when(dictionaryClient.getDictionaryForType(FALSE_POSITIVE)).thenReturn(getDictionaryResponse(FALSE_POSITIVE, false));
-
-        start = System.currentTimeMillis();
-
-        ManualRedactions manualRedactions = new ManualRedactions();
-
-        manualRedactions.setImageRecategorization(Set.of(ManualImageRecategorization.builder()
-                .annotationId("37eee3e9d589a5cc529bfec38c3ba479")
-                .fileId("fileId")
-                .status(AnnotationStatus.APPROVED)
-                .type("signature")
-                .build()));
-
-        request.setManualRedactions(manualRedactions);
-
-        AnalyzeResult reanalyzeResult = analyzeService.reanalyze(request);
-
-        redactionLog = redactionStorageService.getRedactionLog(TEST_DOSSIER_ID, TEST_FILE_ID);
-
-        end = System.currentTimeMillis();
-        System.out.println("reanalysis analysis duration: " + (end - start));
-
-        AnnotateResponse annotateResponse = redactionController.annotate(AnnotateRequest.builder()
-                .dossierId(TEST_DOSSIER_ID)
-                .fileId(TEST_FILE_ID)
-                .build());
-
-        try (FileOutputStream fileOutputStream = new FileOutputStream(outputFileName)) {
-            fileOutputStream.write(annotateResponse.getDocument());
-        }
-
-        deleted.remove("mouse");
-        reanlysisVersions.put("mouse", 4L);
-
-        when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(4L);
-
-        when(dictionaryClient.getDictionaryForType(VERTEBRATE)).thenReturn(getDictionaryResponse(VERTEBRATE, false));
-
-        analyzeService.reanalyze(request);
-
-        redactionLog = redactionStorageService.getRedactionLog(TEST_DOSSIER_ID, TEST_FILE_ID);
-
-        System.out.println("hi");
     }
 
 
     @Test
     public void redactionTest() throws IOException {
 
-        String fileName = "files/new/VV-919901.pdf";
-        String outputFileName = getTemporaryDirectory() + "/Annotated.pdf";
-
         long start = System.currentTimeMillis();
-        ClassPathResource pdfFileResource = new ClassPathResource(fileName);
+        ClassPathResource pdfFileResource = new ClassPathResource("files/S11.pdf");
         AnalyzeRequest request = prepareStorage(pdfFileResource.getInputStream());
         request.setExcludedPages(Set.of(1));
 
@@ -846,9 +729,11 @@ public class RedactionIntegrationTest {
 
         when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(3L);
 
-        when(dictionaryClient.getDictionaryForType(VERTEBRATE)).thenReturn(getDictionaryResponse(VERTEBRATE, false));
+        when(dictionaryClient.getDictionaryForType(VERTEBRATE))
+                .thenReturn(getDictionaryResponse(VERTEBRATE, false));
 
-        when(dictionaryClient.getDictionaryForType(FALSE_POSITIVE)).thenReturn(getDictionaryResponse(FALSE_POSITIVE, false));
+        when(dictionaryClient.getDictionaryForType(FALSE_POSITIVE))
+                .thenReturn(getDictionaryResponse(FALSE_POSITIVE, false));
 
         start = System.currentTimeMillis();
 
@@ -875,16 +760,18 @@ public class RedactionIntegrationTest {
                 .fileId(TEST_FILE_ID)
                 .build());
 
-        try (FileOutputStream fileOutputStream = new FileOutputStream(outputFileName)) {
+        try (FileOutputStream fileOutputStream = new FileOutputStream(getTemporaryDirectory() + "/Annotated.pdf")) {
             fileOutputStream.write(annotateResponse.getDocument());
         }
 
+
         deleted.remove("mouse");
         reanlysisVersions.put("mouse", 4L);
 
         when(dictionaryClient.getVersion(TEST_DOSSIER_TEMPLATE_ID)).thenReturn(4L);
 
-        when(dictionaryClient.getDictionaryForType(VERTEBRATE)).thenReturn(getDictionaryResponse(VERTEBRATE, false));
+        when(dictionaryClient.getDictionaryForType(VERTEBRATE))
+                .thenReturn(getDictionaryResponse(VERTEBRATE, false));
 
         analyzeService.reanalyze(request);
 
@@ -960,19 +847,21 @@ public class RedactionIntegrationTest {
         manualRedactionEntry.setType("name");
         manualRedactionEntry.setValue("O'Loughlin C.K.");
         manualRedactionEntry.setReason("Manual Redaction");
-        manualRedactionEntry.setPositions(List.of(Rectangle.builder()
-                .topLeftX(375.61096f)
-                .topLeftY(241.282f)
-                .width(7.648041f)
-                .height(43.72262f)
-                .page(1)
-                .build(), Rectangle.builder()
-                .topLeftX(384.83517f)
-                .topLeftY(241.282f)
-                .width(7.648041f)
-                .height(17.043358f)
-                .page(1)
-                .build()));
+        manualRedactionEntry.setPositions(List.of(Rectangle
+                        .builder()
+                        .topLeftX(375.61096f)
+                        .topLeftY(241.282f)
+                        .width(7.648041f)
+                        .height(43.72262f)
+                        .page(1).build()
+                , Rectangle
+                        .builder()
+                        .topLeftX(384.83517f)
+                        .topLeftY(241.282f)
+                        .width(7.648041f)
+                        .height(17.043358f)
+                        .page(1).build())
+        );
 
 //        manualRedactions.getEntriesToAdd().add(manualRedactionEntry);
 
@@ -1017,7 +906,7 @@ public class RedactionIntegrationTest {
     public void classificationTest() throws IOException {
 
         System.out.println("classificationTest");
-        ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Single Table.pdf");
+        ClassPathResource pdfFileResource = new ClassPathResource("files/S11.pdf");
 
         AnalyzeRequest request = prepareStorage(pdfFileResource.getInputStream());
 
@@ -1039,7 +928,7 @@ public class RedactionIntegrationTest {
     public void sectionsTest() throws IOException {
 
         System.out.println("sectionsTest");
-        ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Single Table.pdf");
+        ClassPathResource pdfFileResource = new ClassPathResource("files/S11.pdf");
 
         AnalyzeRequest request = prepareStorage(pdfFileResource.getInputStream());
 
@@ -1061,7 +950,7 @@ public class RedactionIntegrationTest {
     public void htmlTablesTest() throws IOException {
 
         System.out.println("htmlTablesTest");
-        ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Single Table.pdf");
+        ClassPathResource pdfFileResource = new ClassPathResource("files/S11.pdf");
 
         AnalyzeRequest request = prepareStorage(pdfFileResource.getInputStream());
 
@@ -1175,160 +1064,6 @@ public class RedactionIntegrationTest {
     }
 
 
-    @Test
-    public void resizeRedactionTest() throws IOException {
-
-        ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Single Table.pdf");
-
-        ManualRedactions manualRedactions = new ManualRedactions();
-
-        String manualAddId = UUID.randomUUID().toString();
-
-        Comment comment = Comment.builder()
-                .date(OffsetDateTime.now())
-                .user("TEST_USER")
-                .text("This is a comment test")
-                .build();
-        manualRedactions.setIdsToRemove(Set.of(IdRemoval.builder()
-                .annotationId("5b940b2cb401ed9f5be6fc24f6e77bcf")
-                .fileId("fileId")
-                .status(AnnotationStatus.DECLINED)
-                .processedDate(OffsetDateTime.now())
-                .requestDate(OffsetDateTime.now())
-                .build()));
-        manualRedactions.setForceRedactions(Set.of(ManualForceRedaction.builder()
-                .annotationId("675eba69b0c2917de55462c817adaa05")
-                .fileId("fileId")
-                .legalBasis("Something")
-                .status(AnnotationStatus.APPROVED)
-                .requestDate(OffsetDateTime.now())
-                .processedDate(OffsetDateTime.now())
-                .build()));
-
-        manualRedactions.getComments().put("e5be0f1d941bbb92a068e198648d06c4", List.of(comment));
-        manualRedactions.getComments().put("0836727c3508a0b2ea271da69c04cc2f", List.of(comment));
-        manualRedactions.getComments().put(manualAddId, List.of(comment));
-
-        ManualRedactionEntry manualRedactionEntry = new ManualRedactionEntry();
-        manualRedactionEntry.setAnnotationId(manualAddId);
-        manualRedactionEntry.setFileId("fileId");
-        manualRedactionEntry.setStatus(AnnotationStatus.APPROVED);
-        manualRedactionEntry.setType("CBI_author");
-        manualRedactionEntry.setValue("O'Loughlin C.K.");
-        manualRedactionEntry.setReason("Manual Redaction");
-        manualRedactionEntry.setProcessedDate(OffsetDateTime.now());
-        manualRedactionEntry.setRequestDate(OffsetDateTime.now());
-        manualRedactionEntry.setPositions(List.of(Rectangle.builder()
-                .topLeftX(375.61096f)
-                .topLeftY(241.282f)
-                .width(7.648041f)
-                .height(43.72262f)
-                .page(1)
-                .build(), Rectangle.builder()
-                .topLeftX(384.83517f)
-                .topLeftY(241.282f)
-                .width(7.648041f)
-                .height(17.043358f)
-                .page(1)
-                .build()));
-
-//        manualRedactions.getEntriesToAdd().add(manualRedactionEntry);
-
-        AnalyzeRequest request = prepareStorage(pdfFileResource.getInputStream());
-        request.setManualRedactions(manualRedactions);
-        analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
-        AnalyzeResult result = analyzeService.analyze(request);
-
-        manualRedactions.getEntriesToAdd().add(manualRedactionEntry);
-        manualRedactions.setIdsToRemove(Set.of(IdRemoval.builder()
-                .annotationId("5b940b2cb401ed9f5be6fc24f6e77bcf")
-                .fileId("fileId")
-                .status(AnnotationStatus.APPROVED)
-                .requestDate(OffsetDateTime.now())
-                .processedDate(OffsetDateTime.now())
-                .build()));
-        manualRedactions.setLegalBasisChanges((Set.of(ManualLegalBasisChange.builder()
-                .annotationId("675eba69b0c2917de55462c817adaa05")
-                .fileId("fileId")
-                .legalBasis("Manual Legal Basis Change")
-                .status(AnnotationStatus.APPROVED)
-                .processedDate(OffsetDateTime.now())
-                .requestDate(OffsetDateTime.now())
-                .build())));
-        manualRedactions.setResizeRedactions(Set.of(ManualResizeRedaction.builder()
-                .annotationId("fc287b74be2421156ab2895c7474ccdd")
-                .fileId("fileId")
-                .processedDate(OffsetDateTime.now())
-                .requestDate(OffsetDateTime.now())
-                .value("Syngenta Crop Protection AG, Basel, Switzerland RCC Ltd., Itingen, Switzerland")
-                .positions(List.of(Rectangle.builder()
-                        .topLeftX(289.44595f)
-                        .topLeftY(327.567f)
-                        .width(7.648041f)
-                        .height(82.51475f)
-                        .page(1)
-                        .build(), Rectangle.builder()
-                        .topLeftX(298.67056f)
-                        .topLeftY(327.567f)
-                        .width(7.648041f)
-                        .height(75.32377f)
-                        .page(1)
-                        .build(), Rectangle.builder()
-                        .topLeftX(307.89517f)
-                        .topLeftY(327.567f)
-                        .width(7.648041f)
-                        .height(61.670967f)
-                        .page(1)
-                        .build(), Rectangle.builder()
-                        .topLeftX(316.99985f)
-                        .topLeftY(327.567f)
-                        .width(7.648041f)
-                        .height(38.104286f)
-                        .page(1)
-                        .build()))
-                .status(AnnotationStatus.APPROVED)
-                .build()));
-
-        analyzeService.reanalyze(request);
-
-        AnnotateResponse annotateResponse = redactionController.annotate(AnnotateRequest.builder()
-                .dossierId(TEST_DOSSIER_ID)
-                .fileId(TEST_FILE_ID)
-                .dossierTemplateId(TEST_DOSSIER_TEMPLATE_ID)
-                .manualRedactions(manualRedactions)
-                .build());
-
-        try (FileOutputStream fileOutputStream = new FileOutputStream(getTemporaryDirectory() + "/Annotated.pdf")) {
-            fileOutputStream.write(annotateResponse.getDocument());
-        }
-
-    }
-
-    @Test
-    public void testExpandByRegEx() throws IOException {
-
-        System.out.println("expandByRegex");
-        long start = System.currentTimeMillis();
-
-        AnalyzeRequest request = prepareStorage("files/Metolachlor/S-Metolachlor_RAR_02_Volume_2_2018-09-06.pdf");
-        analyzeService.analyzeDocumentStructure(new StructureAnalyzeRequest(request.getDossierId(), request.getFileId()));
-        AnalyzeResult result = analyzeService.analyze(request);
-
-        AnnotateResponse annotateResponse = redactionController.annotate(AnnotateRequest.builder()
-                .dossierId(TEST_DOSSIER_ID)
-                .fileId(TEST_FILE_ID)
-                .build());
-
-        try (FileOutputStream fileOutputStream = new FileOutputStream(getTemporaryDirectory() + "/Annotated.pdf")) {
-            fileOutputStream.write(annotateResponse.getDocument());
-        }
-        long end = System.currentTimeMillis();
-
-        System.out.println("duration: " + (end - start));
-        System.out.println("numberOfPages: " + result.getNumberOfPages());
-    }
-
-
     private static String loadFromClassPath(String path) {
 
         URL resource = ResourceLoader.class.getClassLoader().getResource(path);
@@ -1347,27 +1082,7 @@ public class RedactionIntegrationTest {
         }
     }
 
-
-    private List<File> getPathsRecursively(File path) {
-
-        List<File> result = new ArrayList<>();
-        if (path == null || path.listFiles() == null) {
-            return result;
-        }
-        for (File f : path.listFiles()) {
-            if (f.isFile()) {
-                result.add(f);
-            } else {
-                result.addAll(getPathsRecursively(f));
-            }
-        }
-        return result;
-
-    }
-
-
     private static String getTemporaryDirectory() {
-
         String tmpdir = System.getProperty("java.io.tmpdir");
         if (StringUtils.isNotBlank(tmpdir)) {
             return tmpdir;

redaction-service-v1/redaction-service-server-v1/src/test/resources/dictionaries/CBI_address.txt

@@ -1,8 +1,3 @@
-A & L Laboratories, 3505 Conestoga Drive, Fort Wayne, IN 46806-4413, Indiana, USA
-Jealotts Hill Research Station, Bracknell
-Jealott s Hill Research Station, Bracknell
-Western Research Center, 120
-Fort Wayne, IN 46806-4413, Indiana
 Abandoned vineyard, Northern Italy
 ABC Analytical Bio-Chemistry Lab. Inc.
 ABC Analytical Bio-Chemistry Lab. Inc., Columbia, USA
@@ -1638,7 +1633,6 @@ XenoTech, LLC, 16825 West 116th Street, Lenexa, KS, USA
 Zeneca Ag Products
 Zeneca Ag Products, Richmond, USA
 Zeneca Agrochemicals
-ZENECA Agrochemicals
 Zeneca Agrochemicals, Fernhurst, United Kingdom
 Zeneca Agrochemicals, Jealott’s Hill Research Station, Bracknell, Berkshire, UK
 Zeneca Agrochemical s, Jealott’s Hill, United Kingdom

redaction-service-v1/redaction-service-server-v1/src/test/resources/dictionaries/CBI_author.txt

@@ -1,30 +1,3 @@
-Johnson R |
-Weissler M S and Butters C A
-AD Hurt
-N Pengelly
-HA J Napper
-E M Roper
-Earl M
-Weissler M S
-Warrinton J S
-Kuet SF
-Hadeld ST
-Butters C A
-Hurt AD
-Campbell AJ
-Runnalls JK
-Tummon O J
-Chapman PF
-Snell RJ
-MclIndoe EC
-Johnson R I
-Richard Andrews
-James Paul
-Walter Richard Andrews
-Wilbur H. Palmer
-Jeff Mueller
-James McDonelI
-Jeffrey S. Heither
 1 Braid S.and Tsui G
 1 Schwader A.L.
 2 Lee MR

redaction-service-v1/redaction-service-server-v1/src/test/resources/dictionaries/PII.txt

@@ -1,5 +0,0 @@
-Amendment 1
-Report Number: 33168
-Page
-Report Number: BFI0714
-Tesh Consultants International

redaction-service-v1/redaction-service-server-v1/src/test/resources/drools/allAuthors.drl

@@ -7,20 +7,12 @@ global Section section
 
 // --------------------------------------- CBI rules -------------------------------------------------------------------
 
-//rule "0: Expand CBI Authors with firstname initials"
-//    when
-//        Section(matchesType("CBI_author") || matchesType("recommendation_CBI_author"))
-//    then
-//        section.expandByRegEx("CBI_author", "(,? [A-Z]\\.?( ?[A-Z]\\.?)?( ?[A-Z]\\.?)?\\b\\.?)", false, 1);
-//        section.expandByRegEx("recommendation_CBI_author", "(,? [A-Z]\\.?( ?[A-Z]\\.?)?( ?[A-Z]\\.?)?\\b\\.?)", false, 1);
-//    end
-
 rule "0: Expand CBI Authors with firstname initials"
     when
         Section(matchesType("CBI_author") || matchesType("recommendation_CBI_author"))
     then
-        section.expandByRegEx("CBI_author", "(,? [A-Z]\\.?( ?[A-Z]\\.?)?( ?[A-Z]\\.?)?\\b\\.?)", false, 1, "[^\\s]+");
-        section.expandByRegEx("recommendation_CBI_author", "(,? [A-Z]\\.?( ?[A-Z]\\.?)?( ?[A-Z]\\.?)?\\b\\.?)", false, 1, "[^\\s]+");
+        section.expandByRegEx("CBI_author", "(,? [A-Z]\\.?( ?[A-Z]\\.?)?( ?[A-Z]\\.?)?\\b\\.?)", false, 1);
+        section.expandByRegEx("recommendation_CBI_author", "(,? [A-Z]\\.?( ?[A-Z]\\.?)?( ?[A-Z]\\.?)?\\b\\.?)", false, 1);
     end
 
 

redaction-service-v1/redaction-service-server-v1/src/test/resources/drools/rules.drl

@@ -7,20 +7,12 @@ global Section section
 
 // --------------------------------------- CBI rules -------------------------------------------------------------------
 
-//rule "0: Expand CBI Authors with firstname initials"
-//    when
-//        Section(matchesType("CBI_author") || matchesType("recommendation_CBI_author"))
-//    then
-//        section.expandByRegEx("CBI_author", "(,? [A-Z]\\.?( ?[A-Z]\\.?)?( ?[A-Z]\\.?)?\\b\\.?)", false, 1);
-//        section.expandByRegEx("recommendation_CBI_author", "(,? [A-Z]\\.?( ?[A-Z]\\.?)?( ?[A-Z]\\.?)?\\b\\.?)", false, 1);
-//    end
-
 rule "0: Expand CBI Authors with firstname initials"
     when
         Section(matchesType("CBI_author") || matchesType("recommendation_CBI_author"))
     then
-        section.expandByRegEx("CBI_author", "(,? [A-Z]\\.?( ?[A-Z]\\.?)?( ?[A-Z]\\.?)?\\b\\.?)", false, 1, "[^\\s]+");
-        section.expandByRegEx("recommendation_CBI_author", "(,? [A-Z]\\.?( ?[A-Z]\\.?)?( ?[A-Z]\\.?)?\\b\\.?)", false, 1, "[^\\s]+");
+        section.expandByRegEx("CBI_author", "(,? [A-Z]\\.?( ?[A-Z]\\.?)?( ?[A-Z]\\.?)?\\b\\.?)", false, 1);
+        section.expandByRegEx("recommendation_CBI_author", "(,? [A-Z]\\.?( ?[A-Z]\\.?)?( ?[A-Z]\\.?)?\\b\\.?)", false, 1);
     end