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161 Commits
Author SHA1 Message Date
Dominique Eiflaender 979ab71090 Pull request #152: Added isDossierDictionaryEntry to manualRedactions and redactionLog
Merge in RED/redaction-service from isDossierDictionary to master

* commit 'b7ae6cf390b1aa58c9f6210e3c8fcbfac89a6610':
  Added isDossierDictionaryEntry to manualRedactions and redactionLog
2021-04-29 12:36:09 +02:00
Dominique Eifländer b7ae6cf390 Added isDossierDictionaryEntry to manualRedactions and redactionLog 2021-04-29 12:29:50 +02:00
Dominique Eiflaender 01eceaaef4 Pull request #151: RED-1334: Enabled to use dictionaries per dossier
Merge in RED/redaction-service from RED-1334 to master

* commit '48beb984ca02ab163a64af38907a05d70b048655':
  RED-1334: Enabled to use dictionaries per dossier
2021-04-28 15:20:50 +02:00
Dominique Eifländer 48beb984ca RED-1334: Enabled to use dictionaries per dossier 2021-04-28 15:11:11 +02:00
Timo Bejan f7af37d287 Pull request #150: cleaned up image code
Merge in RED/redaction-service from image-cleanup to master

* commit '1ddcafbdd23adb8354259660e25723449fb47855':
  cleaned up image code
2021-04-26 18:35:14 +02:00
Timo 1ddcafbdd2 cleaned up image code 2021-04-26 19:01:01 +03:00
Timo Bejan e1b8ca4956 Pull request #149: moved changelog to redaction service, removed filename from changelog
Merge in RED/redaction-service from improved-redaction-performance to master

* commit 'c05fdb48545b829ae82502c6d6ad486f2210f8f2':
  moved changelog to redaction service, removed filename from changelog
2021-04-26 14:52:44 +02:00
Timo c05fdb4854 moved changelog to redaction service, removed filename from changelog 2021-04-26 15:48:17 +03:00
Clarissa Dietrich e723208473 Pull request #148: RED-1378: fix: merging images condition
Merge in RED/redaction-service from mergingFix to master

* commit '047ac9bf848d168b2a1bbe9217538b6bdac00de6':
  RED-1378: fix: merging images condition
2021-04-26 12:16:10 +02:00
Clarissa.Dietrich 047ac9bf84 RED-1378: fix: merging images condition 2021-04-26 10:50:35 +02:00
Timo Bejan b83250f161 Pull request #141: fix: merge images into one
Merge in RED/redaction-service from classimg3 to master

* commit '4d1ad3b5a56915e9e5df9191a535c0e5cd83972c':
  RED-1351: merge images into one
2021-04-23 09:36:04 +02:00
Clarissa.Dietrich 4d1ad3b5a5 RED-1351: merge images into one 2021-04-22 17:10:12 +02:00
Timo Bejan 24f33fe6bf Pull request #147: fixed changelog storage
Merge in RED/redaction-service from improved-redaction-performance to master

* commit '44ff9cb7757034a3df9c017f58a3381b52d73133':
  fixed changelog storage
2021-04-21 19:45:17 +02:00
Timo 44ff9cb775 fixed changelog storage 2021-04-21 20:41:18 +03:00
Timo Bejan 88524d0118 Pull request #146: reworked api
Merge in RED/redaction-service from redaction-system-queue-prep to master

* commit '735cfdd6c4f8ffd6024f9803c7c5466205ebf7b4':
  reworked api
2021-04-21 17:57:05 +02:00
Timo 735cfdd6c4 reworked api 2021-04-21 18:53:29 +03:00
Timo Bejan 08f3ee8544 Pull request #145: removed long test, fixed NPE
Merge in RED/redaction-service from redaction-system-queue-prep to master

* commit '3af121193214d250fe9dc58056f13a315d724184':
  fixed reanalyse condition
  fixed reanalyse condition
  removed long test, fixed NPE
2021-04-21 17:29:41 +02:00
Timo 3af1211932 fixed reanalyse condition 2021-04-21 18:16:39 +03:00
Timo c1d5be8f63 fixed reanalyse condition 2021-04-21 18:13:35 +03:00
Timo 567bb00377 removed long test, fixed NPE 2021-04-21 18:13:35 +03:00
Timo Bejan d7679c8c38 Pull request #144: Updated code to respond to file-status service on successful/failed analysis
Merge in RED/redaction-service from redaction-system-queue-prep to master

* commit 'f6d0b2d0db867afcb8a3edfd48b1d101c681cd65':
  temporary ignore this
  added missing config yml
  Updated code to respond to file-status service on successful/failed analysis
2021-04-21 17:01:09 +02:00
Timo f6d0b2d0db temporary ignore this 2021-04-21 17:34:01 +03:00
Timo 43217e6abe added missing config yml 2021-04-21 17:28:01 +03:00
Timo 8182b1a0fa Updated code to respond to file-status service on successful/failed analysis 2021-04-21 17:15:49 +03:00
Timo Bejan b22e3d93c0 Pull request #143: prepared redaction service for queue handling
Merge in RED/redaction-service from redaction-system-queue-prep to master

* commit 'ab3b30b28256a93fff79b642080ddc1d940992a9':
  prepared redaction service for queue handling
2021-04-21 13:55:48 +02:00
Timo ab3b30b282 prepared redaction service for queue handling 2021-04-21 14:11:22 +03:00
Timo 0d63f9372f added reanalyse if possible flag to analyse request 2021-04-21 09:16:36 +03:00
Timo Bejan 07b05b2d89 Pull request #142: Improved redaction performance
Merge in RED/redaction-service from improved-redaction-performance to master

* commit 'b34fc673c4d5a4440d6e5f2391db4420c4d2acf9':
  bamboo-specs/src/main/java/buildjob/PlanSpec.java edited online with Bitbucket
  fixed some test issues
  fixed pmd
  updated planspec
  updated redrect
  set mvn opts
  run tests with real life jvm args to detect oom issues early
  code format, dependecy and test update, logging for reanalysis
  reworked reanalysis and text storage
  Serialization of text
2021-04-20 10:30:15 +02:00
Timo Bejan b34fc673c4 bamboo-specs/src/main/java/buildjob/PlanSpec.java edited online with Bitbucket 2021-04-20 09:57:25 +02:00
Timo 5b24c3a52c fixed some test issues 2021-04-20 10:56:19 +03:00
Timo 385dff63ce fixed pmd 2021-04-20 10:37:53 +03:00
Timo f1ce52a19a updated planspec 2021-04-20 10:33:30 +03:00
Timo e48e4e1797 updated redrect 2021-04-20 10:32:54 +03:00
Timo 7af51f992a set mvn opts 2021-04-20 10:32:11 +03:00
Timo 15f911ee73 run tests with real life jvm args to detect oom issues early 2021-04-20 10:28:40 +03:00
Timo ba28a3e0d3 code format, dependecy and test update, logging for reanalysis 2021-04-20 10:26:27 +03:00
Timo 1d4708ad13 reworked reanalysis and text storage 2021-04-20 09:51:50 +03:00
Timo 5c2596e268 Serialization of text 2021-04-19 13:08:32 +03:00
Timo Bejan 674ebf8eb7 Pull request #140: Improved redaction performance
Merge in RED/redaction-service from improved-redaction-performance to master

* commit '42fcea85d30f914fe02e304e69a551da409c6c3b':
  set image type on error
  proper error handling for image clasification
2021-04-18 11:39:27 +02:00
Timo 42fcea85d3 set image type on error 2021-04-18 11:31:33 +03:00
Timo a34d2fb675 proper error handling for image clasification 2021-04-18 11:30:53 +03:00
Timo Bejan e38aed22de Pull request #139: attempted fix for image clasification
Merge in RED/redaction-service from improved-redaction-performance to master

* commit 'ed5686dc51f57c9e772ccc3c0ef2a8955e7f3e73':
  Re-worked cache issues
  close final PDDocument
  fixed in-memory storage issues
  "fixed" memory issues by calling GC manually, removing soft reference cache and disposing images properly
  attempted fix for image clasification
2021-04-17 09:13:12 +02:00
Timo ed5686dc51 Re-worked cache issues 2021-04-17 09:55:46 +03:00
Timo 8112f2035a close final PDDocument 2021-04-17 09:18:01 +03:00
Timo 169ab20351 fixed in-memory storage issues 2021-04-17 09:10:40 +03:00
Timo 8060e3a29f "fixed" memory issues by calling GC manually, removing soft reference cache and disposing images properly 2021-04-16 23:13:12 +03:00
Timo 4749858e80 attempted fix for image clasification 2021-04-16 20:53:09 +03:00
Timo Bejan 8429e262ea Pull request #138: added versions to analyze result
Merge in RED/redaction-service from improved-redaction-performance to master

* commit '93d75e2f1c9f692989b69d2c20df7073f6db45c7':
  added versions to analyze result
2021-04-16 15:12:39 +02:00
Timo 93d75e2f1c added versions to analyze result 2021-04-16 15:52:17 +03:00
Timo Bejan 0ac55afbb0 Pull request #137: Reworked re-analysis and analysis to use memory model / directly read/store files, and dumped pd doc wherever possible
Merge in RED/redaction-service from improved-redaction-performance to master

* commit '5cb4ea287cfecc61efbe959f182e9e7f4e2ba78c':
  Reworked re-analysis and analysis to use memory model / directly read/store files, and dumped pd doc wherever possible
2021-04-16 14:25:33 +02:00
Timo 5cb4ea287c Reworked re-analysis and analysis to use memory model / directly read/store files, and dumped pd doc wherever possible 2021-04-16 14:50:04 +03:00
Dominique Eiflaender ed59f36220 Pull request #136: Fixed endless loop on documents that contains no text
Merge in RED/redaction-service from EndlessLoopFix to master

* commit 'c157a80630323aa0d654559636b7246e1901b598':
  Fixed endless loop on documents that contains no text
2021-04-16 10:12:55 +02:00
Dominique Eifländer c157a80630 Fixed endless loop on documents that contains no text 2021-04-16 09:42:29 +02:00
Dominique Eiflaender a7aa3a723a Pull request #135: RED-1260: Enabled to add rules and manuel redaction actions for images
Merge in RED/redaction-service from RED-1260 to master

* commit '55ba351362785de41090fb4252c9ee7c4c486991':
  RED-1260: Enabled to add rules and manuel redaction actions for images
2021-04-15 13:08:24 +02:00
Dominique Eifländer 55ba351362 RED-1260: Enabled to add rules and manuel redaction actions for images 2021-04-15 12:51:29 +02:00
Dominique Eiflaender 9696a421fc Pull request #134: RED-1260
Merge in RED/redaction-service from RED-1260 to master

* commit 'ae28555bf4c740d9872e26fb27615fbf7402f002':
  RED-1260: First steps for image classification
  Integrate image classification
2021-04-09 15:11:49 +02:00
Dominique Eifländer ae28555bf4 RED-1260: First steps for image classification 2021-04-09 13:37:00 +02:00
Dominique Eifländer 2558b3cab8 Integrate image classification 2021-04-09 11:44:12 +02:00
Dominique Eiflaender 2c92f03f2a Pull request #133: Do not remove images on reanalysis
Merge in RED/redaction-service from DoNotRemoveImages2 to master

* commit 'fc70f972da887370f011ad1998e209ba676d90db':
  Do not remove images on reanalysis
2021-04-08 16:02:05 +02:00
Dominique Eifländer fc70f972da Do not remove images on reanalysis 2021-04-08 15:47:11 +02:00
Dominique Eiflaender 0e8c28f8fd Pull request #132: Do not remove images at reanalysis
Merge in RED/redaction-service from ImageReanalysisFix to master

* commit 'e7c24487c755ab84c0f1efe5a0c6e9d4794d4c0f':
  Do not remove images at reanalysis
2021-04-08 15:37:13 +02:00
Dominique Eifländer e7c24487c7 Do not remove images at reanalysis 2021-04-08 15:22:25 +02:00
Dominique Eiflaender fc10152145 Pull request #131: RED-1276: Fixed annotation position problem for 270° rotated pages
Merge in RED/redaction-service from RED-1276 to master

* commit '8375c04829347f43c2151e80dd4f4571b0c2757d':
  RED-1276: Fixed annotation position problem for 270° rotated pages
2021-04-08 10:49:40 +02:00
Dominique Eifländer 8375c04829 RED-1276: Fixed annotation position problem for 270° rotated pages 2021-04-08 10:30:51 +02:00
Dominique Eiflaender 57a79719d4 Pull request #130: RED-1061: Upgraded to newest spring boot/cloud and reenabled actuator metrics
Merge in RED/redaction-service from RED-1061 to master

* commit '0638877d0afb3b577f7be5467cde1d1b34044772':
  RED-1061: Upgraded to newest spring boot/cloud and reenabled actuator metrics
2021-03-15 13:37:30 +01:00
Dominique Eifländer 0638877d0a RED-1061: Upgraded to newest spring boot/cloud and reenabled actuator metrics 2021-03-15 13:22:14 +01:00
Dominique Eiflaender 6c33b7e2ae Pull request #129: RED-1170: Do not use non dictionay hints vor local analysis
Merge in RED/redaction-service from RED-1170 to master

* commit 'aac4d0437e2f9e81f5f4a814dbc86e47b07f57d7':
  RED-1170: Do not use non dictionay hints vor local analysis
2021-03-15 11:56:38 +01:00
Dominique Eifländer aac4d0437e RED-1170: Do not use non dictionay hints vor local analysis 2021-03-15 11:35:40 +01:00
Dominique Eiflaender 93dcd6b9f7 Pull request #128: Fixed importing caseinsensitive dictionaties
Merge in RED/redaction-service from caseInSensFix to master

* commit 'bd56364cc3bfa25084069c79bef107869bdc5574':
  Fixed importing caseinsensitive dictionaties
2021-03-12 15:25:43 +01:00
Dominique Eifländer bd56364cc3 Fixed importing caseinsensitive dictionaties 2021-03-12 15:08:34 +01:00
Dominique Eiflaender 91942730e8 Pull request #127: Fixed renalysis for caseinsensitive dictionary entries
Merge in RED/redaction-service from caseinsensitiveValues to master

* commit 'f4ea236fc587df34eda20ead5762737bca447f3d':
  Fixed renalysis for caseinsensitive dictionary entries
2021-03-11 14:15:17 +01:00
Dominique Eifländer f4ea236fc5 Fixed renalysis for caseinsensitive dictionary entries 2021-03-11 13:57:15 +01:00
Dominique Eiflaender 9db74628a4 Pull request #126: First steps for incremental analysis
Merge in RED/redaction-service from incrementAnalysis to master

* commit '511092b9e76d58af33dfff90c1133b92e850d47c':
  First steps for incremental analysis
2021-03-09 09:12:13 +01:00
Dominique Eifländer 511092b9e7 First steps for incremental analysis 2021-03-08 16:31:37 +01:00
Dominique Eiflaender dd4f1b34e1 Pull request #125: RED-1090: Return text with areas and sectionNumber
Merge in RED/redaction-service from RED-1090 to master

* commit '0dd47111c5294d9a9a0a10e174c2832436983205':
  RED-1090: Return text with areas and sectionNumber
2021-02-25 15:10:58 +01:00
Dominique Eifländer 0dd47111c5 RED-1090: Return text with areas and sectionNumber 2021-02-25 14:55:53 +01:00
Dominique Eiflaender 7d507c8fda Pull request #124: Adjusted rules to new requirements, add possibility to addRedaction for rules
Merge in RED/redaction-service from NewRequirementsRules to master

* commit 'b6a13d1ff8a55f1b5ef528af5ea726b5e17b4950':
  Adjusted rules to new requirements, add possibility to addRedaction for rules
2021-02-18 10:48:26 +01:00
Dominique Eifländer b6a13d1ff8 Adjusted rules to new requirements, add possibility to addRedaction for rules 2021-02-18 10:33:38 +01:00
Dominique Eiflaender 06e418c34e Pull request #123: RED-1070: Fixed not finding annotation on not classified textblocks
Merge in RED/redaction-service from RED-1070 to master

* commit 'de1dea7ac323dc005baeb0660cc492ab84a88164':
  RED-1070: Fixed not finding annotation on not classified textblocks
2021-02-18 09:18:59 +01:00
Dominique Eifländer de1dea7ac3 RED-1070: Fixed not finding annotation on not classified textblocks 2021-02-18 08:58:51 +01:00
Dominique Eiflaender 53509f072e Pull request #122: RED-1055: Enabled to force redact ignore annotations
Merge in RED/redaction-service from RED-1055 to master

* commit 'e0fba8d38ce9858235ca84182f4587d472890ef1':
  RED-1055: Enabled to force redact ignore annotations
2021-02-12 10:55:04 +01:00
Dominique Eifländer e0fba8d38c RED-1055: Enabled to force redact ignore annotations 2021-02-12 10:41:32 +01:00
Lena  Maldacker 8989191314 Pull request #121: Add hint annotation by reg-ex and expand to hint annotation by reg-ex
Merge in RED/redaction-service from dismissGen to master

* commit '0f263c69b8f2eb7201f062cc263c8d06b7a710a1':
  Add hint annotation by reg-ex and expand to hint annotation by reg-ex
2021-02-11 17:22:55 +01:00
lmaldacker 0f263c69b8 Add hint annotation by reg-ex and expand to hint annotation by reg-ex 2021-02-11 16:53:07 +01:00
Kresnadi Budisantoso ea1c2898bc Remove duplicate build tasks in bamboo specs 2021-02-11 14:11:22 +01:00
Dominique Eiflaender 6d9ed080ce Pull request #120: RED-1039: Fixed finding textpositions, RED-1042: Fixed get rectangles per line
Merge in RED/redaction-service from RED-1039 to master

* commit '00b0cb160342f1857ac0e523f994918057d5fc6b':
  RED-1039: Fixed finding textpositions, RED-1042: Fixed get rectangles per line
2021-02-08 14:50:02 +01:00
Dominique Eifländer 00b0cb1603 RED-1039: Fixed finding textpositions, RED-1042: Fixed get rectangles per line 2021-02-08 14:09:11 +01:00
Dominique Eiflaender 5ecf21290c Pull request #119: RED-1046: Ignore dictionary rank for words that are explicitly set in the rules
Merge in RED/redaction-service from RED-1046 to master

* commit '8965e7654867ff666c54c841319376c5899e7326':
  RED-1046: Ignore dictionary rank for words that are explicitly set in the rules
2021-02-05 15:08:15 +01:00
Dominique Eifländer 8965e76548 RED-1046: Ignore dictionary rank for words that are explicitly set in the rules 2021-02-05 14:55:16 +01:00
Dominique Eiflaender ba8c4dc240 Pull request #118: RED-1045: Enabled to redact in headers and footers
Merge in RED/redaction-service from RED-1045 to master

* commit '577db37b11dfd0243d22986a6d224700f0b49693':
  RED-1045: Enabled to redact in headers and footers
2021-02-05 13:16:55 +01:00
Dominique Eifländer 577db37b11 RED-1045: Enabled to redact in headers and footers 2021-02-05 13:05:12 +01:00
Dominique Eiflaender 154e09b843 Pull request #117: Fixed several table extraction problems
Merge in RED/redaction-service from tableExtractionImprovement to master

* commit 'a101b98a400b2a35635f2c5e0e894ac849288c3b':
  Fixed several table extraction problems
2021-02-04 15:21:12 +01:00
Dominique Eifländer a101b98a40 Fixed several table extraction problems 2021-02-04 15:08:48 +01:00
Dominique Eiflaender 76ecfdabd3 Pull request #116: Fixed table extraction problems
Merge in RED/redaction-service from TableExtractionProbemFix to master

* commit 'fc2ac03691871a8a1f3c8a29756e3a60e63e16bf':
  Fixed table extraction problems
2021-02-03 14:49:01 +01:00
Dominique Eifländer fc2ac03691 Fixed table extraction problems 2021-02-03 14:34:29 +01:00
Dominique Eiflaender 7898f6a30f Pull request #115: Expand CBI Authors with firstname initials
Merge in RED/redaction-service from ExpandAuthors to master

* commit '35f3582d0850053c1dc38ef0b149daa47bd9cc56':
  Expand CBI Authors with firstname initials
2021-02-02 12:35:07 +01:00
Dominique Eifländer 35f3582d08 Expand CBI Authors with firstname initials 2021-02-02 12:20:40 +01:00
Dominique Eiflaender b4699caaae Pull request #114: Fixed position problem for rotated images
Merge in RED/redaction-service from rotatedImages to master

* commit 'd8e444280b5a025e19785c70c9fcbb11480b5042':
  Fixed position problem for rotated images
2021-02-01 16:17:19 +01:00
Dominique Eifländer d8e444280b Fixed position problem for rotated images 2021-02-01 16:04:45 +01:00
Dominique Eiflaender ec4db538a7 Pull request #113: Ignore too small images
Merge in RED/redaction-service from IgnoreTooSmall to master

* commit '39ca191b9cb5dec5fbb01e8319cbbe361c7cd85e':
  Ignore too small images
2021-02-01 15:46:57 +01:00
Dominique Eifländer 39ca191b9c Ignore too small images 2021-02-01 15:14:46 +01:00
Dominique Eiflaender 0cec88f1b4 Pull request #112: Annotate images
Merge in RED/redaction-service from annotateImages to master

* commit 'acddfafa5b60d0120a48bdf47fe218bf59e359d2':
  Annotate images
2021-02-01 14:12:28 +01:00
Dominique Eifländer acddfafa5b Annotate images 2021-02-01 13:52:18 +01:00
Dominique Eiflaender 6b68890fcf Pull request #111: RED-1019: Fixed returning numberOfPages
Merge in RED/redaction-service from RED-1019 to master

* commit '1ed99412595b560d92e542d949e52d19d58beb2c':
  RED-1019: Fixed returning numberOfPages
2021-01-29 13:32:05 +01:00
Dominique Eifländer 1ed9941259 RED-1019: Fixed returning numberOfPages 2021-01-29 13:17:25 +01:00
Timo Bejan 1e7d535a33 Pull request #110: fixed issue affecting service on restarts
Merge in RED/redaction-service from bugfix-annotate to master

* commit '1091d6a886243387f23da32d0c678b66b0c21f26':
  fixed issue affecting service on restarts
2021-01-28 10:17:02 +01:00
Timo 1091d6a886 fixed issue affecting service on restarts 2021-01-28 11:05:01 +02:00
Dominique Eiflaender d8a1e43991 Pull request #109: RED-1010: Splittet redaction endpoint to analyis and annotation endpoints
Merge in RED/redaction-service from RED-1010 to master

* commit 'd739a4f2f5e95d25fc68cda35f1a5cc79b4ded5f':
  RED-1010: Splittet redaction endpoint to analyis and annotation endpoints
2021-01-27 15:32:24 +01:00
Dominique Eifländer d739a4f2f5 RED-1010: Splittet redaction endpoint to analyis and annotation endpoints 2021-01-27 15:19:38 +01:00
Dominique Eiflaender 40a9b39688 Pull request #108: RED-1004: Fixed position problems when mediabox is bigger than cropbox
Merge in RED/redaction-service from RED-1004 to master

* commit '62b960f2ead02b6f29537447077822c171f65bf8':
  RED-1004: Fixed position problems when mediabox is bigger than cropbox
2021-01-27 11:47:00 +01:00
Dominique Eifländer 62b960f2ea RED-1004: Fixed position problems when mediabox is bigger than cropbox 2021-01-27 11:34:17 +01:00
Dominique Eiflaender 0d9e318d25 Pull request #107: Always check dictionary rank when overriding annotations
Merge in RED/redaction-service from checkOverrideRank to master

* commit 'a76095c5d62e1d5f39013d77c95328dee9f7fbea':
  Always check dictionary rank when overriding annotations
2021-01-26 12:16:18 +01:00
Dominique Eifländer a76095c5d6 Always check dictionary rank when overriding annotations 2021-01-26 12:04:26 +01:00
Dominique Eiflaender 8d1e574dde Pull request #106: Added possibility to redact all Author tables
Merge in RED/redaction-service from AllAuthorTables to master

* commit '43a3d76f1c0ac9e3803cc1e228508b48686e893d':
  Added possibility to redact all Author tables
2021-01-25 16:11:05 +01:00
Dominique Eifländer 43a3d76f1c Added possibility to redact all Author tables 2021-01-25 15:59:08 +01:00
Dominique Eiflaender 4ed41b1a7e Pull request #105: Fixed recognize rules and exceptions for redactAndRecommend, fixed wrong order of rules(published information)
Merge in RED/redaction-service from redactAndRecommendFix2 to master

* commit '7dfaf604e7fb0d09e66a1688b1657006a3e92156':
  Fixed recognize rules and exceptions for redactAndRecommend, fixed wrong order of rules(published information)
2021-01-25 11:39:17 +01:00
Dominique Eifländer 7dfaf604e7 Fixed recognize rules and exceptions for redactAndRecommend, fixed wrong order of rules(published information) 2021-01-25 11:20:35 +01:00
Dominique Eiflaender 70dea61e24 Pull request #104: Recoginze rules and exceptions for redactAndRecommend, Do not redact publish information authors in new rulesset
Merge in RED/redaction-service from RedactAndRecommendFix to master

* commit '531eeebae1b5811d4e03086f5a4060450f86513a':
  Recoginze rules and exceptions for redactAndRecommend, Do not redact publish information authors in new rulesset
2021-01-25 10:21:21 +01:00
Dominique Eifländer 531eeebae1 Recoginze rules and exceptions for redactAndRecommend, Do not redact publish information authors in new rulesset 2021-01-25 09:46:09 +01:00
Dominique Eiflaender 375d84b236 Pull request #103: RED-934: Added rule to redact purity and et al Authors will be redacted where they are found
Merge in RED/redaction-service from RED-934 to master

* commit '33795527fdc4fd82f6ad26ec5720a539620b1293':
  RED-934: Added rule to redact purity and et al Authors will be redacted where they are found
2021-01-20 13:30:16 +01:00
Dominique Eifländer 33795527fd RED-934: Added rule to redact purity and et al Authors will be redacted where they are found 2021-01-20 13:18:37 +01:00
Dominique Eiflaender 91772dfb0d Pull request #102: RED-937: Handle rules version per RuleSetId
Merge in RED/redaction-service from RED-937 to master

* commit '89f642ba900ea60aa08f75da75ff09fd93eb2fc2':
  RED-937: Handle rules version per RuleSetId
2021-01-13 13:04:25 +01:00
Dominique Eifländer 89f642ba90 RED-937: Handle rules version per RuleSetId 2021-01-13 12:52:59 +01:00
Dominique Eiflaender 2dd8dd73c8 Pull request #101: Clean recommendation values starting with :
Merge in RED/redaction-service from cleanRecommendation to master

* commit '9104db6fa4f186b4758a2ccc8265f6ca004fca19':
  Clean recommendation values starting with :
2021-01-12 13:52:48 +01:00
Dominique Eifländer 9104db6fa4 Clean recommendation values starting with : 2021-01-12 13:41:19 +01:00
Dominique Eiflaender 59778682a2 Pull request #100: Recommend CBI_address in Test Organism/Animals sections
Merge in RED/redaction-service from recommendCBIaddress to master

* commit 'f3b0eb291107966d4ae2490f8d096ef2eabd8452':
  Recommend CBI_address in Test Organism/Animals sections
2021-01-12 11:42:52 +01:00
Dominique Eifländer f3b0eb2911 Recommend CBI_address in Test Organism/Animals sections 2021-01-12 11:30:40 +01:00
Dominique Eiflaender 4aef72552c Pull request #99: Revert idRemoval fix, removed duplicate code
Merge in RED/redaction-service from duplicateCodeRemove to master

* commit 'd10c0a7900ffd85c254656db377d5dfc1505c5ab':
  Revert idRemoval fix, removed duplicate code
2021-01-08 14:08:18 +01:00
Dominique Eifländer d10c0a7900 Revert idRemoval fix, removed duplicate code 2021-01-08 13:46:55 +01:00
Timo Bejan f693667fbb Pull request #98: idRemoval fix
Merge in RED/redaction-service from annotation-fix to master

* commit 'e3a960d0861bdfa96b90fe406eb825573007530e':
  idRemoval fix
2021-01-08 10:40:22 +01:00
Timo e3a960d086 idRemoval fix 2021-01-08 11:29:47 +02:00
Dominique Eiflaender a8fdfc4edd Pull request #97: Avoid IndexOutOfBoundsException if dictionary entry has blank at end
Merge in RED/redaction-service from IndexOutOfBoundsBlankFix to master

* commit 'e23ed69e04aa0507eee022cd590a51422a1b09d3':
  Avoid IndexOutOfBoundsException if dictionary entry has blank at end
2021-01-07 16:32:19 +01:00
Dominique Eifländer e23ed69e04 Avoid IndexOutOfBoundsException if dictionary entry has blank at end 2021-01-07 16:20:51 +01:00
Dominique Eiflaender caf20e4776 Pull request #96: Fixed RegEx for et al.
Merge in RED/redaction-service from EtAlRegEx to master

* commit '633fb403e0ac82a88fd8a0d334685fec986c016f':
  Fixed RegEx for et al. recommendations
2021-01-07 13:18:43 +01:00
Dominique Eifländer 633fb403e0 Fixed RegEx for et al. recommendations 2021-01-07 13:07:21 +01:00
Timo Bejan e58b4ff6c1 Pull request #95: Feature/ruleset integration
Merge in RED/redaction-service from feature/ruleset-integration to master

* commit '2c4350b8f369c00177781edc4567df1f2806a2fe':
  Rules Tester
  rule update fix
2021-01-06 18:47:57 +01:00
Timo 2c4350b8f3 Rules Tester 2021-01-06 19:37:39 +02:00
Timo 07ffeab3ae rule update fix 2021-01-06 19:30:40 +02:00
Timo Bejan f087d4afdb Pull request #94: dev mode features, exception generalisation
Merge in RED/redaction-service from feature/ruleset-integration to master

* commit 'c2669ab56843f3ec335cfb1cd7d1e59dc828fb98':
  fixed tests
  fixed tests
  dev mode features, exception generalisation
2021-01-06 16:23:56 +01:00
Timo c2669ab568 fixed tests 2021-01-06 17:04:07 +02:00
Timo a824aa20a5 fixed tests 2021-01-06 17:02:43 +02:00
Timo 6412cf37d9 dev mode features, exception generalisation 2021-01-06 16:41:16 +02:00
Dominique Eiflaender 43d20ad1e7 Pull request #93: RED-727: Added possibility to redact/addRecommendations by regEx in rules.
Merge in RED/redaction-service from RED-727 to master

* commit 'de725a630c06fbc6c6bef6229fcf3ba5c859ef73':
  RED-727: Added possibility to redact/addRecommendations by regEx in rules. Added email regEx and et al. author recommendation regEx
2021-01-06 15:06:37 +01:00
Dominique Eifländer de725a630c RED-727: Added possibility to redact/addRecommendations by regEx in rules. Added email regEx and et al. author recommendation regEx 2021-01-06 14:53:49 +01:00
Timo Bejan 75127fd1bd Pull request #92: RedactionLog now stores ruleSetId
Merge in RED/redaction-service from feature/ruleset-integration to master

* commit '09069d11add65ae999ac80129d2188c64efaefec':
  RedactionLog now stores ruleSetId
2021-01-06 09:23:26 +01:00
Timo 09069d11ad RedactionLog now stores ruleSetId 2021-01-06 10:11:16 +02:00
Timo Bejan ad62a0666f Pull request #91: RuleSetId integration and drools update
Merge in RED/redaction-service from feature/ruleset-integration to master

* commit '5aba4b69bab772222bfd842afe52aae57c6ebba6':
  RuleSetId integration and drools update
2021-01-06 00:57:19 +01:00
Timo 5aba4b69ba RuleSetId integration and drools update 2021-01-06 01:45:38 +02:00
Dominique Eiflaender c2fd749fec Pull request #90: Fixed annotating cell with more than one TextBlock (Mismatch between EntityPositionSequence and found Entity)
Merge in RED/redaction-service from AnnotateCellFix to master

* commit 'e8256c49dc73c0ac93dff427bbeb3bcbfde5dd8b':
  Fixed annotating cell with more than one TextBlock (Mismatch between EntityPositionSequence and found Entity)
2021-01-05 15:03:37 +01:00
Dominique Eifländer e8256c49dc Fixed annotating cell with more than one TextBlock (Mismatch between EntityPositionSequence and found Entity) 2021-01-05 14:53:09 +01:00
Dominique Eiflaender 62351c8d16 Pull request #89: Tables with only 2 column are treated as on text
Merge in RED/redaction-service from 2columnTables to master

* commit '599c7bd6e474b61c32f92d6c67e53a80de13a2e7':
  Tables with only 2 column are treated as on text
2021-01-05 12:35:05 +01:00
Dominique Eifländer 599c7bd6e4 Tables with only 2 column are treated as on text 2021-01-05 12:23:24 +01:00
Dominique Eiflaender 22f609a93a Pull request #88: Fixed false positive dictionary problems
Merge in RED/redaction-service from FalsePositiveFix to master

* commit '609018a051a41504328caf3bd44d27af5848959d':
  Fixed false positive dictionary problems
2021-01-04 16:51:10 +01:00
Dominique Eifländer 609018a051 Fixed false positive dictionary problems 2021-01-04 16:34:55 +01:00
Dominique Eiflaender dedd169031 Pull request #87: Find annotations also in Header cells
Merge in RED/redaction-service from HeaderCellAnnotations to master

* commit '704e6a4b5abad5c1e6f820e7b94c8a50b4c0dc6c':
  Find annotations also in Header cells
2021-01-04 12:09:49 +01:00
Dominique Eifländer 704e6a4b5a Find annotations also in Header cells 2021-01-04 11:53:03 +01:00
Timo Bejan eeda6fd207 Pull request #86: fixed text-after and text-before spacing
Merge in RED/redaction-service from text-after-before-fix to master

* commit '0bc5abb29d0cf688201a37825bb0c726b2c7dcd2':
  fixed text-after and text-before spacing
2021-01-03 12:05:53 +01:00
Timo 0bc5abb29d fixed text-after and text-before spacing 2021-01-03 12:40:21 +02:00
Dominique Eiflaender 53cb9718b6 Pull request #85: Handle 'u00A0' character the same way as ' '
Merge in RED/redaction-service from specialSpaceCharacter to master

* commit '79b57e85cd724ac040b5da9e33f90f4568aac7d0':
  Handle 'u00A0' character the same way as ' '
2020-12-23 11:07:44 +01:00
Dominique Eifländer 79b57e85cd Handle 'u00A0' character the same way as ' ' 2020-12-23 10:57:58 +01:00
Kresnadi Budisantoso b173975ff5 Pull request #84: Fixed 'Comparison method violates its general contract' by using QuickSort from PDFBox
Merge in RED/redaction-service from sortAlgorithm to master

* commit '000b145e710b8459e56223e77a9e19f4a7edd33e':
  Fixed 'Comparison method violates its general contract' by using QuickSort from PDFBox
2020-12-22 16:17:38 +01:00
122 changed files with 6405 additions and 2559 deletions
@@ -1,7 +1,5 @@
package buildjob;
import static com.atlassian.bamboo.specs.builders.task.TestParserTask.createJUnitParserTask;
import com.atlassian.bamboo.specs.api.BambooSpec;
import com.atlassian.bamboo.specs.api.builders.BambooKey;
import com.atlassian.bamboo.specs.api.builders.docker.DockerConfiguration;
@@ -24,6 +22,8 @@ import com.atlassian.bamboo.specs.builders.trigger.BitbucketServerTrigger;
import com.atlassian.bamboo.specs.model.task.InjectVariablesScope;
import com.atlassian.bamboo.specs.util.BambooServer;
import static com.atlassian.bamboo.specs.builders.task.TestParserTask.createJUnitParserTask;
/**
* Plan configuration for Bamboo.
* Learn more on: <a href="https://confluence.atlassian.com/display/BAMBOO/Bamboo+Specs">https://confluence.atlassian.com/display/BAMBOO/Bamboo+Specs</a>
@@ -33,6 +33,8 @@ public class PlanSpec {
private static final String SERVICE_NAME = "redaction-service";
private static final String JVM_ARGS =" -Xmx4g -XX:+ExitOnOutOfMemoryError -XX:SurvivorRatio=2 -XX:NewRatio=1 -XX:InitialTenuringThreshold=16 -XX:MaxTenuringThreshold=16 -XX:InitiatingHeapOccupancyPercent=35 ";
private static final String SERVICE_KEY = SERVICE_NAME.toUpperCase().replaceAll("-", "");
/**
@@ -72,14 +74,6 @@ public class PlanSpec {
.jobs(new Job("Default Job",
new BambooKey("JOB1"))
.tasks(
new ScriptTask()
.description("Clean")
.inlineBody("#!/bin/bash\n" +
"set -e\n" +
"rm -rf ./*"),
new VcsCheckoutTask()
.description("Checkout Default Repository")
.checkoutItems(new CheckoutItem().defaultRepository()),
new ScriptTask()
.description("Clean")
.inlineBody("#!/bin/bash\n" +
@@ -90,9 +84,12 @@ public class PlanSpec {
.checkoutItems(new CheckoutItem().defaultRepository()),
new ScriptTask()
.description("Build")
.environmentVariables("MAVEN_OPTS="+JVM_ARGS)
.inlineBody("#!/bin/bash\n" +
"set -e\n" +
"export MAVEN_OPTS=\"$MAVEN_OPTS "+JVM_ARGS +"\"\n" +
"if [[ \"${bamboo.version_tag}\" != \"dev\" ]]; then ${bamboo_capability_system_builder_mvn3_Maven_3}/bin/mvn --no-transfer-progress -f ${bamboo_build_working_directory}/" + SERVICE_NAME + "-v1/pom.xml versions:set -DnewVersion=${bamboo.version_tag}; fi\n" +
"if [[ \"${bamboo.version_tag}\" != \"dev\" ]]; then ${bamboo_capability_system_builder_mvn3_Maven_3}/bin/mvn --no-transfer-progress -f ${bamboo_build_working_directory}/" + SERVICE_NAME + "-image-v1/pom.xml versions:set -DnewVersion=${bamboo.version_tag}; fi\n" +
+3 -3
View File
@@ -5,7 +5,7 @@
<parent>
<artifactId>platform-dependency</artifactId>
<groupId>com.iqser.red</groupId>
<version>1.0.2</version>
<version>1.1.2</version>
</parent>
<modelVersion>4.0.0</modelVersion>
@@ -32,7 +32,7 @@
<dependency>
<groupId>com.iqser.red</groupId>
<artifactId>platform-commons-dependency</artifactId>
<version>1.1.0</version>
<version>1.3.1</version>
<scope>import</scope>
<type>pom</type>
</dependency>
@@ -52,4 +52,4 @@
</dependencyManagement>
</project>
</project>
@@ -0,0 +1,24 @@
package com.iqser.red.service.redaction.v1.model;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
import java.time.OffsetDateTime;
@Data
@Builder
@NoArgsConstructor
@AllArgsConstructor
public class AnalyzeRequest {
private String projectId;
private String fileId;
private String ruleSetId;
private boolean reanalyseOnlyIfPossible;
private ManualRedactions manualRedactions;
private OffsetDateTime lastProcessed;
}
@@ -0,0 +1,29 @@
package com.iqser.red.service.redaction.v1.model;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@Builder
@NoArgsConstructor
@AllArgsConstructor
public class AnalyzeResult {
private String projectId;
private String fileId;
private long duration;
private int numberOfPages;
private boolean hasHints;
private boolean hasRequests;
private boolean hasRedactions;
private boolean hasImages;
private boolean hasUpdates;
private long dictionaryVersion;
private long dossierDictionaryVersion;
private long rulesVersion;
}
@@ -0,0 +1,16 @@
package com.iqser.red.service.redaction.v1.model;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@Builder
@NoArgsConstructor
@AllArgsConstructor
public class AnnotateRequest {
private String projectId;
private String fileId;
}
@@ -0,0 +1,15 @@
package com.iqser.red.service.redaction.v1.model;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@Builder
@NoArgsConstructor
@AllArgsConstructor
public class AnnotateResponse {
private byte[] document;
}
@@ -0,0 +1,5 @@
package com.iqser.red.service.redaction.v1.model;
public enum ChangeType {
ADDED, REMOVED
}
@@ -1,12 +1,12 @@
package com.iqser.red.service.redaction.v1.model;
import java.time.OffsetDateTime;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
import java.time.OffsetDateTime;
@Data
@Builder
@AllArgsConstructor
@@ -0,0 +1,19 @@
package com.iqser.red.service.redaction.v1.model;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@Builder
@AllArgsConstructor
@NoArgsConstructor
public class ManualForceRedact {
private String id;
private String user;
private Status status;
private String legalBasis;
}
@@ -1,13 +1,13 @@
package com.iqser.red.service.redaction.v1.model;
import java.util.ArrayList;
import java.util.List;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
import java.util.ArrayList;
import java.util.List;
@Data
@Builder
@AllArgsConstructor
@@ -27,4 +27,6 @@ public class ManualRedactionEntry {
private String section;
private int sectionNumber;
private boolean addToDossierDictionary;
}
@@ -1,5 +1,5 @@
package com.iqser.red.service.redaction.v1.model;
public enum ManualRedactionType {
ADD, REMOVE
ADD, REMOVE, FORCE_REDACT
}
@@ -1,16 +1,16 @@
package com.iqser.red.service.redaction.v1.model;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@Builder
@AllArgsConstructor
@@ -20,6 +20,9 @@ public class ManualRedactions {
@Builder.Default
private Set<IdRemoval> idsToRemove = new HashSet<>();
@Builder.Default
private Set<ManualForceRedact> forceRedacts = new HashSet<>();
@Builder.Default
private Set<ManualRedactionEntry> entriesToAdd = new HashSet<>();
@@ -0,0 +1,15 @@
package com.iqser.red.service.redaction.v1.model;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@Builder
@NoArgsConstructor
@AllArgsConstructor
public class ReanalyzeResult {
private RedactionLog redactionLog;
}
@@ -0,0 +1,22 @@
package com.iqser.red.service.redaction.v1.model;
import lombok.AllArgsConstructor;
import lombok.Data;
import lombok.NoArgsConstructor;
import java.util.ArrayList;
import java.util.List;
@Data
@AllArgsConstructor
@NoArgsConstructor
public class RedactionChangeLog {
private List<RedactionChangeLogEntry> redactionLogEntry = new ArrayList<>();
private long dictionaryVersion = -1;
private long rulesVersion = -1;
private String ruleSetId;
}
@@ -0,0 +1,47 @@
package com.iqser.red.service.redaction.v1.model;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
import java.util.ArrayList;
import java.util.List;
@Data
@Builder
@NoArgsConstructor
@AllArgsConstructor
public class RedactionChangeLogEntry {
private String id;
private String type;
private String value;
private String reason;
private int matchedRule;
private String legalBasis;
private boolean redacted;
private boolean isHint;
private boolean isRecommendation;
private String section;
private float[] color;
@Builder.Default
private List<Rectangle> positions = new ArrayList<>();
private int sectionNumber;
private boolean manual;
private Status status;
private ManualRedactionType manualRedactionType;
private boolean isDictionaryEntry;
private String textBefore;
private String textAfter;
@Builder.Default
private List<Comment> comments = new ArrayList<>();
private ChangeType changeType;
private boolean isDossierDictionaryEntry;
}
@@ -1,29 +1,32 @@
package com.iqser.red.service.redaction.v1.model;
import java.util.List;
import lombok.AllArgsConstructor;
import lombok.Data;
import lombok.NoArgsConstructor;
import java.util.List;
@Data
@AllArgsConstructor
@NoArgsConstructor
public class RedactionLog {
public RedactionLog(List<RedactionLogEntry> redactionLogEntry, long dictionaryVersion, long rulesVersion) {
this.redactionLogEntry = redactionLogEntry;
this.dictionaryVersion = dictionaryVersion;
this.rulesVersion = rulesVersion;
}
private List<RedactionLogEntry> redactionLogEntry;
private long dictionaryVersion = -1;
private long rulesVersion = -1;
private String filename;
private String ruleSetId;
private long dossierDictionaryVersion = -1;
public RedactionLog(List<RedactionLogEntry> redactionLogEntry, long dictionaryVersion, long rulesVersion, String ruleSetId, long dossierDictionaryVersion) {
this.redactionLogEntry = redactionLogEntry;
this.dictionaryVersion = dictionaryVersion;
this.rulesVersion = rulesVersion;
this.ruleSetId = ruleSetId;
this.dossierDictionaryVersion = dossierDictionaryVersion;
}
}
@@ -1,13 +1,13 @@
package com.iqser.red.service.redaction.v1.model;
import java.util.ArrayList;
import java.util.List;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
import java.util.ArrayList;
import java.util.List;
@Data
@Builder
@NoArgsConstructor
@@ -37,4 +37,14 @@ public class RedactionLogEntry {
private String textBefore;
private String textAfter;
@Builder.Default
private List<Comment> comments = new ArrayList<>();
private int startOffset;
private int endOffset;
private boolean isImage;
private boolean isDossierDictionaryEntry;
}
@@ -11,7 +11,8 @@ import lombok.NoArgsConstructor;
@AllArgsConstructor
public class RedactionRequest {
private byte[] document;
private boolean flatRedaction;
private String projectId;
private String fileId;
private String ruleSetId;
private ManualRedactions manualRedactions;
}
@@ -13,7 +13,5 @@ public class RedactionResult {
private byte[] document;
private int numberOfPages;
private RedactionLog redactionLog;
private SectionGrid sectionGrid;
}
@@ -0,0 +1,33 @@
package com.iqser.red.service.redaction.v1.model;
import lombok.AllArgsConstructor;
import lombok.Data;
import lombok.NoArgsConstructor;
import lombok.NonNull;
import lombok.RequiredArgsConstructor;
@Data
@RequiredArgsConstructor
@NoArgsConstructor
@AllArgsConstructor
public class SectionArea {
@NonNull
private Point topLeft;
@NonNull
private float width;
@NonNull
private float height;
@NonNull
private int page;
private String header;
public boolean contains(Rectangle other) {
return page == other.getPage() && this.topLeft.getX() <= other.getTopLeft().getX() && this.topLeft.getX() + this.getWidth() >= other.getTopLeft().getX() + other.getWidth() && this.getTopLeft().getY() <= other.getTopLeft().getY() && this.getTopLeft().getY() + this.getHeight() >= other.getTopLeft().getY() + other.getHeight();
}
}
@@ -1,13 +1,13 @@
package com.iqser.red.service.redaction.v1.model;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import lombok.AllArgsConstructor;
import lombok.Data;
import lombok.NoArgsConstructor;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
@Data
@AllArgsConstructor
@NoArgsConstructor
@@ -1,13 +1,13 @@
package com.iqser.red.service.redaction.v1.model;
import java.util.List;
import lombok.AllArgsConstructor;
import lombok.Data;
import lombok.NoArgsConstructor;
import lombok.NonNull;
import lombok.RequiredArgsConstructor;
import java.util.List;
@Data
@AllArgsConstructor
@NoArgsConstructor
@@ -1,18 +1,21 @@
package com.iqser.red.service.redaction.v1.resources;
import com.iqser.red.service.redaction.v1.model.*;
import org.springframework.http.MediaType;
import org.springframework.web.bind.annotation.PathVariable;
import org.springframework.web.bind.annotation.PostMapping;
import org.springframework.web.bind.annotation.RequestBody;
import com.iqser.red.service.redaction.v1.model.RedactionRequest;
import com.iqser.red.service.redaction.v1.model.RedactionResult;
public interface RedactionResource {
String SERVICE_NAME = "redaction-service-v1";
@PostMapping(value = "/redact", produces = MediaType.APPLICATION_JSON_VALUE, consumes = MediaType.APPLICATION_JSON_VALUE)
RedactionResult redact(@RequestBody RedactionRequest redactionRequest);
String RULE_SET_PARAMETER_NAME = "ruleSetId";
String RULE_SET_PATH_VARIABLE = "/{" + RULE_SET_PARAMETER_NAME + "}";
@PostMapping(value = "/annotate", produces = MediaType.APPLICATION_JSON_VALUE, consumes = MediaType.APPLICATION_JSON_VALUE)
AnnotateResponse annotate(@RequestBody AnnotateRequest annotateRequest);
@PostMapping(value = "/debug/classifications", produces = MediaType.APPLICATION_JSON_VALUE, consumes = MediaType.APPLICATION_JSON_VALUE)
RedactionResult classify(@RequestBody RedactionRequest redactionRequest);
@@ -23,7 +26,10 @@ public interface RedactionResource {
@PostMapping(value = "/debug/htmlTables", produces = MediaType.APPLICATION_JSON_VALUE, consumes = MediaType.APPLICATION_JSON_VALUE)
RedactionResult htmlTables(@RequestBody RedactionRequest redactionRequest);
@PostMapping(value = "/rules/update", consumes = MediaType.APPLICATION_JSON_VALUE)
void updateRules(@RequestBody String rules);
@PostMapping(value = "/rules/update" + RULE_SET_PATH_VARIABLE, consumes = MediaType.APPLICATION_JSON_VALUE)
void updateRules(@PathVariable(RULE_SET_PARAMETER_NAME) String ruleSetId);
}
@PostMapping(value = "/rules/test", consumes = MediaType.APPLICATION_JSON_VALUE)
void testRules(@RequestBody String rules);
}
@@ -12,6 +12,10 @@
<artifactId>redaction-service-server-v1</artifactId>
<dependencies>
<dependency>
<groupId>com.iqser.red.commons</groupId>
<artifactId>storage-commons</artifactId>
</dependency>
<dependency>
<groupId>com.iqser.red.service</groupId>
<artifactId>redaction-service-api-v1</artifactId>
@@ -20,7 +24,18 @@
<dependency>
<groupId>com.iqser.red.service</groupId>
<artifactId>configuration-service-api-v1</artifactId>
<version>1.3.7</version>
<version>2.5.6</version>
</dependency>
<dependency>
<groupId>com.iqser.red.service</groupId>
<artifactId>file-management-service-api-v1</artifactId>
<version>2.7.4</version>
<exclusions>
<exclusion>
<groupId>com.iqser.red.service</groupId>
<artifactId>redaction-service-api-v1</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.drools</groupId>
@@ -73,11 +88,13 @@
<groupId>org.springframework.cloud</groupId>
<artifactId>spring-cloud-starter-openfeign</artifactId>
</dependency>
<!-- ribbon must be included because transitive a dependency on it.-->
<dependency>
<groupId>org.springframework.cloud</groupId>
<artifactId>spring-cloud-starter-netflix-ribbon</artifactId>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-amqp</artifactId>
<version>2.3.1.RELEASE</version>
</dependency>
<!-- test dependencies -->
<dependency>
<groupId>org.springframework.boot</groupId>
@@ -89,6 +106,12 @@
<artifactId>test-commons</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.springframework.amqp</groupId>
<artifactId>spring-rabbit-test</artifactId>
<version>2.3.1</version>
<scope>test</scope>
</dependency>
</dependencies>
<build>
@@ -1,71 +1,26 @@
package com.iqser.red.service.redaction.v1.server;
import java.io.ByteArrayInputStream;
import java.io.InputStream;
import java.nio.charset.StandardCharsets;
import org.apache.commons.lang3.StringUtils;
import org.kie.api.KieServices;
import org.kie.api.builder.KieBuilder;
import org.kie.api.builder.KieFileSystem;
import org.kie.api.builder.KieModule;
import org.kie.api.runtime.KieContainer;
import org.springframework.beans.factory.annotation.Autowired;
import com.iqser.red.commons.spring.DefaultWebMvcConfiguration;
import com.iqser.red.service.redaction.v1.server.client.RulesClient;
import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
import org.springframework.boot.SpringApplication;
import org.springframework.boot.actuate.autoconfigure.metrics.web.servlet.WebMvcMetricsAutoConfiguration;
import org.springframework.boot.actuate.autoconfigure.security.servlet.ManagementWebSecurityAutoConfiguration;
import org.springframework.boot.autoconfigure.SpringBootApplication;
import org.springframework.boot.autoconfigure.security.servlet.SecurityAutoConfiguration;
import org.springframework.boot.context.properties.EnableConfigurationProperties;
import org.springframework.cloud.openfeign.EnableFeignClients;
import org.springframework.context.annotation.Bean;
import org.springframework.context.annotation.Import;
import com.iqser.red.commons.spring.DefaultWebMvcConfiguration;
import com.iqser.red.service.configuration.v1.api.model.RulesResponse;
import com.iqser.red.service.redaction.v1.server.client.RulesClient;
import com.iqser.red.service.redaction.v1.server.exception.RulesValidationException;
import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
@Import({DefaultWebMvcConfiguration.class})
@EnableFeignClients(basePackageClasses = RulesClient.class)
@EnableConfigurationProperties(RedactionServiceSettings.class)
@SpringBootApplication(exclude = {SecurityAutoConfiguration.class, ManagementWebSecurityAutoConfiguration.class, WebMvcMetricsAutoConfiguration.class})
@SpringBootApplication(exclude = {SecurityAutoConfiguration.class, ManagementWebSecurityAutoConfiguration.class})
public class Application {
@Autowired
private RulesClient rulesClient;
public static void main(String[] args) {
System.setProperty("org.apache.pdfbox.rendering.UsePureJavaCMYKConversion", "true");
SpringApplication.run(Application.class, args);
}
@Bean
public KieContainer kieContainer() {
try {
KieServices kieServices = KieServices.Factory.get();
KieFileSystem kieFileSystem = kieServices.newKieFileSystem();
RulesResponse rules = rulesClient.getRules();
if (StringUtils.isEmpty(rules.getRules())) {
throw new RuntimeException("Rules cannot be empty.");
}
InputStream input = new ByteArrayInputStream(rules.getRules().getBytes(StandardCharsets.UTF_8));
kieFileSystem.write("src/main/resources/drools/rules.drl", kieServices.getResources()
.newInputStreamResource(input));
KieBuilder kieBuilder = kieServices.newKieBuilder(kieFileSystem);
kieBuilder.buildAll();
KieModule kieModule = kieBuilder.getKieModule();
return kieServices.newKieContainer(kieModule.getReleaseId());
} catch (Exception e) {
throw new RulesValidationException("Could not update rules: " + e.getMessage(), e);
}
}
}
}
@@ -1,16 +1,18 @@
package com.iqser.red.service.redaction.v1.server.classification.model;
import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
import com.iqser.red.service.redaction.v1.model.SectionGrid;
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryVersion;
import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
import com.iqser.red.service.redaction.v1.server.redaction.model.Image;
import lombok.Data;
import lombok.NoArgsConstructor;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
import com.iqser.red.service.redaction.v1.model.SectionGrid;
import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
import lombok.Data;
import lombok.NoArgsConstructor;
import java.util.Set;
@Data
@NoArgsConstructor
@@ -18,15 +20,23 @@ public class Document {
private List<Page> pages = new ArrayList<>();
private List<Paragraph> paragraphs = new ArrayList<>();
private List<Header> headers = new ArrayList<>();
private List<Footer> footers = new ArrayList<>();
private List<UnclassifiedText> unclassifiedTexts = new ArrayList<>();
private Map<Integer, List<Entity>> entities = new HashMap<>();
private FloatFrequencyCounter textHeightCounter = new FloatFrequencyCounter();
private FloatFrequencyCounter fontSizeCounter= new FloatFrequencyCounter();
private StringFrequencyCounter fontCounter= new StringFrequencyCounter();
private FloatFrequencyCounter fontSizeCounter = new FloatFrequencyCounter();
private StringFrequencyCounter fontCounter = new StringFrequencyCounter();
private StringFrequencyCounter fontStyleCounter = new StringFrequencyCounter();
private boolean headlines;
private List<RedactionLogEntry> redactionLogEntities = new ArrayList<>();
private SectionGrid sectionGrid = new SectionGrid();
private long dictionaryVersion;
private DictionaryVersion dictionaryVersion;
private long rulesVersion;
private List<SectionText> sectionText = new ArrayList<>();
private Map<Integer, Set<Image>> images = new HashMap<>();
}
@@ -1,5 +1,7 @@
package com.iqser.red.service.redaction.v1.server.classification.model;
import lombok.Getter;
import java.util.ArrayList;
import java.util.Collections;
import java.util.HashMap;
@@ -7,38 +9,35 @@ import java.util.List;
import java.util.Map;
import java.util.stream.Collectors;
import lombok.Getter;
public class FloatFrequencyCounter
{
public class FloatFrequencyCounter {
@Getter
Map<Float, Integer> countPerValue = new HashMap<>();
public void add(float value){
if(!countPerValue.containsKey(value)){
public void add(float value) {
if (!countPerValue.containsKey(value)) {
countPerValue.put(value, 1);
} else {
countPerValue.put(value, countPerValue.get(value) + 1);
}
}
public void addAll(Map<Float, Integer> otherCounter){
for(Map.Entry<Float, Integer> entry: otherCounter.entrySet()){
if(countPerValue.containsKey(entry.getKey())){
countPerValue.put(entry.getKey(), countPerValue.get(entry.getKey())+ entry.getValue());
public void addAll(Map<Float, Integer> otherCounter) {
for (Map.Entry<Float, Integer> entry : otherCounter.entrySet()) {
if (countPerValue.containsKey(entry.getKey())) {
countPerValue.put(entry.getKey(), countPerValue.get(entry.getKey()) + entry.getValue());
} else {
countPerValue.put(entry.getKey(), entry.getValue());
}
}
}
public Float getMostPopular(){
public Float getMostPopular() {
Map.Entry<Float, Integer> mostPopular = null;
for(Map.Entry<Float, Integer> entry: countPerValue.entrySet()){
if(mostPopular == null){
for (Map.Entry<Float, Integer> entry : countPerValue.entrySet()) {
if (mostPopular == null) {
mostPopular = entry;
} else if(entry.getValue() >= mostPopular.getValue()){
} else if (entry.getValue() >= mostPopular.getValue()) {
mostPopular = entry;
}
}
@@ -46,12 +45,11 @@ public class FloatFrequencyCounter
}
public List<Float> getHighterThanMostPopular(){
public List<Float> getHighterThanMostPopular() {
Float mostPopular = getMostPopular();
List<Float> higher = new ArrayList<>();
for(Float value: countPerValue.keySet()){
if(value > mostPopular){
for (Float value : countPerValue.keySet()) {
if (value > mostPopular) {
higher.add(value);
}
}
@@ -60,12 +58,12 @@ public class FloatFrequencyCounter
}
public Float getHighest(){
public Float getHighest() {
Float highest = null;
for(Float value: countPerValue.keySet()){
if (highest == null){
for (Float value : countPerValue.keySet()) {
if (highest == null) {
highest = value;
} else if(value > highest){
} else if (value > highest) {
highest = value;
}
}
@@ -0,0 +1,24 @@
package com.iqser.red.service.redaction.v1.server.classification.model;
import com.fasterxml.jackson.annotation.JsonIgnore;
import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
import lombok.AllArgsConstructor;
import lombok.Data;
import java.util.List;
@Data
@AllArgsConstructor
public class Footer {
private List<TextBlock> textBlocks;
@JsonIgnore
public SearchableText getSearchableText() {
SearchableText searchableText = new SearchableText();
textBlocks.forEach(block -> searchableText.addAll(block.getSequences()));
return searchableText;
}
}
@@ -0,0 +1,24 @@
package com.iqser.red.service.redaction.v1.server.classification.model;
import com.fasterxml.jackson.annotation.JsonIgnore;
import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
import lombok.AllArgsConstructor;
import lombok.Data;
import java.util.List;
@Data
@AllArgsConstructor
public class Header {
private List<TextBlock> textBlocks;
@JsonIgnore
public SearchableText getSearchableText() {
SearchableText searchableText = new SearchableText();
textBlocks.forEach(block -> searchableText.addAll(block.getSequences()));
return searchableText;
}
}
@@ -1,14 +1,14 @@
package com.iqser.red.service.redaction.v1.server.classification.model;
import java.util.List;
import com.iqser.red.service.redaction.v1.server.redaction.model.PdfImage;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Rectangle;
import lombok.Data;
import lombok.NonNull;
import lombok.RequiredArgsConstructor;
import java.util.List;
@Data
@RequiredArgsConstructor
public class Page {
@@ -16,6 +16,8 @@ public class Page {
@NonNull
private List<AbstractTextContainer> textBlocks;
private List<PdfImage> images;
private Rectangle bodyTextFrame;
private boolean landscape;
@@ -28,8 +30,10 @@ public class Page {
private StringFrequencyCounter fontCounter = new StringFrequencyCounter();
private StringFrequencyCounter fontStyleCounter = new StringFrequencyCounter();
public boolean isRotated() {
return rotation != 0;
}
}
}
@@ -1,20 +1,21 @@
package com.iqser.red.service.redaction.v1.server.classification.model;
import com.iqser.red.service.redaction.v1.server.redaction.model.PdfImage;
import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
import lombok.Data;
import lombok.NoArgsConstructor;
import java.util.ArrayList;
import java.util.List;
import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@NoArgsConstructor
public class Paragraph {
public class Paragraph implements Comparable {
private List<AbstractTextContainer> pageBlocks = new ArrayList<>();
private List<PdfImage> images = new ArrayList<>();
private String headline;
@@ -53,4 +54,11 @@ public class Paragraph {
return textBlocks;
}
}
@Override
public int compareTo(Object o) {
return 0;
}
}
@@ -0,0 +1,52 @@
package com.iqser.red.service.redaction.v1.server.classification.model;
import com.fasterxml.jackson.annotation.JsonIgnore;
import com.iqser.red.service.redaction.v1.model.SectionArea;
import com.iqser.red.service.redaction.v1.server.redaction.model.CellValue;
import com.iqser.red.service.redaction.v1.server.redaction.model.Image;
import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
import java.util.*;
@Data
@Builder
@NoArgsConstructor
@AllArgsConstructor
public class SectionText {
private int sectionNumber;
private String text;
private boolean isTable;
private String headline;
private List<SectionArea> sectionAreas = new ArrayList<>();
private Set<Image> images = new HashSet<>();
private List<TextBlock> textBlocks = new ArrayList<>();
private Map<String, CellValue> tabularData = new HashMap<>();
private List<Integer> cellStarts = new ArrayList<>();
public void setTabularData(Map<String, CellValue> tabularData) {
tabularData.remove(null);
this.tabularData = tabularData;
}
@JsonIgnore
public SearchableText getSearchableText() {
SearchableText searchableText = new SearchableText();
textBlocks.forEach(block -> {
if (block != null) {
searchableText.addAll(block.getSequences());
}
});
return searchableText;
}
}
@@ -1,10 +1,10 @@
package com.iqser.red.service.redaction.v1.server.classification.model;
import lombok.Getter;
import java.util.HashMap;
import java.util.Map;
import lombok.Getter;
public class StringFrequencyCounter {
@Getter
@@ -46,4 +46,4 @@ public class StringFrequencyCounter {
return mostPopular != null ? mostPopular.getKey() : null;
}
}
}
@@ -0,0 +1,18 @@
package com.iqser.red.service.redaction.v1.server.classification.model;
import lombok.AllArgsConstructor;
import lombok.Data;
import lombok.NoArgsConstructor;
import java.util.ArrayList;
import java.util.List;
@Data
@NoArgsConstructor
@AllArgsConstructor
public class Text {
private int numberOfPages;
private List<SectionText> sectionTexts = new ArrayList<>();
}
@@ -1,19 +1,21 @@
package com.iqser.red.service.redaction.v1.server.classification.model;
import com.fasterxml.jackson.annotation.JsonIgnore;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.utils.TextNormalizationUtilities;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
import java.util.ArrayList;
import java.util.List;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
import com.iqser.red.service.redaction.v1.server.redaction.utils.TextNormalizationUtilities;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
@AllArgsConstructor
@Builder
@Data
@NoArgsConstructor
public class TextBlock extends AbstractTextContainer {
@Builder.Default
@@ -98,7 +100,6 @@ public class TextBlock extends AbstractTextContainer {
}
@Override
public String toString() {
@@ -118,6 +119,7 @@ public class TextBlock extends AbstractTextContainer {
}
@Override
@JsonIgnore
public String getText() {
StringBuilder sb = new StringBuilder();
@@ -139,4 +141,4 @@ public class TextBlock extends AbstractTextContainer {
}
}
}
@@ -0,0 +1,24 @@
package com.iqser.red.service.redaction.v1.server.classification.model;
import com.fasterxml.jackson.annotation.JsonIgnore;
import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
import lombok.AllArgsConstructor;
import lombok.Data;
import java.util.List;
@Data
@AllArgsConstructor
public class UnclassifiedText {
private List<TextBlock> textBlocks;
@JsonIgnore
public SearchableText getSearchableText() {
SearchableText searchableText = new SearchableText();
textBlocks.forEach(block -> searchableText.addAll(block.getSequences()));
return searchableText;
}
}
@@ -1,21 +1,20 @@
package com.iqser.red.service.redaction.v1.server.classification.service;
import java.util.ArrayList;
import java.util.List;
import org.springframework.stereotype.Service;
import com.iqser.red.service.redaction.v1.server.classification.utils.PositionUtils;
import com.iqser.red.service.redaction.v1.server.classification.model.FloatFrequencyCounter;
import com.iqser.red.service.redaction.v1.server.classification.model.Page;
import com.iqser.red.service.redaction.v1.server.classification.model.StringFrequencyCounter;
import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
import com.iqser.red.service.redaction.v1.server.classification.utils.PositionUtils;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Cell;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Rectangle;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Ruling;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
import org.springframework.stereotype.Service;
import java.util.ArrayList;
import java.util.List;
@Service
@SuppressWarnings("all")
@@ -1,19 +1,17 @@
package com.iqser.red.service.redaction.v1.server.classification.service;
import java.util.List;
import java.util.regex.Pattern;
import org.springframework.stereotype.Service;
import com.iqser.red.service.redaction.v1.server.classification.model.Document;
import com.iqser.red.service.redaction.v1.server.classification.model.Page;
import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
import com.iqser.red.service.redaction.v1.server.classification.utils.PositionUtils;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Rectangle;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
import org.springframework.stereotype.Service;
import java.util.List;
import java.util.regex.Pattern;
@Slf4j
@Service
@@ -111,6 +109,8 @@ public class ClassificationService {
textBlock.setClassification("TextBlock Italic");
} else if (PositionUtils.isWithinBodyTextFrame(bodyTextFrame, textBlock)) {
textBlock.setClassification("TextBlock Unknown");
} else {
textBlock.setClassification("Other");
}
}
@@ -2,7 +2,6 @@ package com.iqser.red.service.redaction.v1.server.classification.utils;
import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Rectangle;
import lombok.experimental.UtilityClass;
@UtilityClass
@@ -1,10 +1,8 @@
package com.iqser.red.service.redaction.v1.server.client;
import com.iqser.red.service.configuration.v1.api.resource.DictionaryResource;
import org.springframework.cloud.openfeign.FeignClient;
import com.iqser.red.service.configuration.v1.api.resource.DictionaryResource;
import com.iqser.red.service.configuration.v1.api.resource.RulesResource;
@FeignClient(name = "DictionaryResource", url = "http://" + RulesResource.SERVICE_NAME + ":8080")
@FeignClient(name = "DictionaryResource", url = "${configuration-service.url}")
public interface DictionaryClient extends DictionaryResource {
}
@@ -0,0 +1,9 @@
package com.iqser.red.service.redaction.v1.server.client;
import com.iqser.red.service.file.management.v1.api.resources.FileStatusProcessingUpdateResource;
import org.springframework.cloud.openfeign.FeignClient;
@FeignClient(name = "FileStatusProcessingUpdateResource", url = "${file-management-service.url}")
public interface FileStatusProcessingUpdateClient extends FileStatusProcessingUpdateResource {
}
@@ -0,0 +1,15 @@
package com.iqser.red.service.redaction.v1.server.client;
import org.springframework.cloud.openfeign.FeignClient;
import org.springframework.http.MediaType;
import org.springframework.web.bind.annotation.PostMapping;
import org.springframework.web.bind.annotation.RequestBody;
import org.springframework.web.multipart.MultipartFile;
@FeignClient(name = "ImageClassificationResource", url = "${image-service.url}")
public interface ImageClassificationClient {
@PostMapping(value = "/process_full_img", consumes = MediaType.MULTIPART_FORM_DATA_VALUE, produces = MediaType.APPLICATION_JSON_VALUE)
ImageClassificationResponse classify(@RequestBody MultipartFile file);
}
@@ -0,0 +1,13 @@
package com.iqser.red.service.redaction.v1.server.client;
import lombok.AllArgsConstructor;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@NoArgsConstructor
@AllArgsConstructor
public class ImageClassificationResponse {
private String category;
}
@@ -0,0 +1,102 @@
package com.iqser.red.service.redaction.v1.server.client;
import org.springframework.lang.NonNull;
import org.springframework.lang.Nullable;
import org.springframework.util.Assert;
import org.springframework.util.FileCopyUtils;
import org.springframework.web.multipart.MultipartFile;
import java.io.ByteArrayInputStream;
import java.io.File;
import java.io.IOException;
import java.io.InputStream;
public class MockMultipartFile implements MultipartFile {
private final String name;
private final String originalFilename;
@Nullable
private final String contentType;
private final byte[] content;
public MockMultipartFile(String name, @Nullable byte[] content) {
this(name, "", null, content);
}
public MockMultipartFile(String name, InputStream contentStream) throws IOException {
this(name, "", null, FileCopyUtils.copyToByteArray(contentStream));
}
public MockMultipartFile(String name, @Nullable String originalFilename, @Nullable String contentType,
@Nullable byte[] content) {
Assert.hasLength(name, "Name must not be empty");
this.name = name;
this.originalFilename = originalFilename != null ? originalFilename : "";
this.contentType = contentType;
this.content = content != null ? content : new byte[0];
}
public MockMultipartFile(String name, @Nullable String originalFilename, @Nullable String contentType,
InputStream contentStream) throws IOException {
this(name, originalFilename, contentType, FileCopyUtils.copyToByteArray(contentStream));
}
public String getName() {
return this.name;
}
@NonNull
public String getOriginalFilename() {
return this.originalFilename;
}
@Nullable
public String getContentType() {
return this.contentType;
}
public boolean isEmpty() {
return this.content.length == 0;
}
public long getSize() {
return this.content.length;
}
public byte[] getBytes() throws IOException {
return this.content;
}
public InputStream getInputStream() throws IOException {
return new ByteArrayInputStream(this.content);
}
public void transferTo(File dest) throws IOException, IllegalStateException {
FileCopyUtils.copy(this.content, dest);
}
}
@@ -1,9 +1,8 @@
package com.iqser.red.service.redaction.v1.server.client;
import com.iqser.red.service.configuration.v1.api.resource.RulesResource;
import org.springframework.cloud.openfeign.FeignClient;
import com.iqser.red.service.configuration.v1.api.resource.RulesResource;
@FeignClient(name = RulesResource.SERVICE_NAME, url = "http://" + RulesResource.SERVICE_NAME + ":8080")
@FeignClient(name = "RulesResource", url = "${configuration-service.url}")
public interface RulesClient extends RulesResource {
}
}
@@ -1,17 +1,15 @@
package com.iqser.red.service.redaction.v1.server.controller;
import java.time.OffsetDateTime;
import com.iqser.red.commons.spring.ErrorMessage;
import com.iqser.red.service.redaction.v1.server.exception.RulesValidationException;
import lombok.extern.slf4j.Slf4j;
import org.springframework.http.HttpStatus;
import org.springframework.web.bind.annotation.ExceptionHandler;
import org.springframework.web.bind.annotation.ResponseBody;
import org.springframework.web.bind.annotation.ResponseStatus;
import org.springframework.web.bind.annotation.RestControllerAdvice;
import com.iqser.red.service.redaction.v1.server.exception.RulesValidationException;
import lombok.extern.slf4j.Slf4j;
import java.time.OffsetDateTime;
@Slf4j
@RestControllerAdvice
@@ -38,4 +36,4 @@ public class ControllerAdvice {
return new ErrorMessage(OffsetDateTime.now(), e.getMessage());
}
}
}
@@ -1,33 +1,32 @@
package com.iqser.red.service.redaction.v1.server.controller;
import java.io.ByteArrayInputStream;
import java.io.ByteArrayOutputStream;
import java.io.IOException;
import java.util.List;
import org.apache.pdfbox.pdmodel.PDDocument;
import org.springframework.web.bind.annotation.RequestBody;
import org.springframework.web.bind.annotation.RestController;
import com.iqser.red.service.redaction.v1.model.RedactionLog;
import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
import com.iqser.red.service.file.management.v1.api.model.FileType;
import com.iqser.red.service.redaction.v1.model.AnnotateRequest;
import com.iqser.red.service.redaction.v1.model.AnnotateResponse;
import com.iqser.red.service.redaction.v1.model.RedactionRequest;
import com.iqser.red.service.redaction.v1.model.RedactionResult;
import com.iqser.red.service.redaction.v1.model.SectionGrid;
import com.iqser.red.service.redaction.v1.resources.RedactionResource;
import com.iqser.red.service.redaction.v1.server.classification.model.Document;
import com.iqser.red.service.redaction.v1.server.classification.model.Page;
import com.iqser.red.service.redaction.v1.server.exception.RedactionException;
import com.iqser.red.service.redaction.v1.server.redaction.service.AnnotationService;
import com.iqser.red.service.redaction.v1.server.redaction.service.DictionaryService;
import com.iqser.red.service.redaction.v1.server.redaction.service.DroolsExecutionService;
import com.iqser.red.service.redaction.v1.server.redaction.service.EntityRedactionService;
import com.iqser.red.service.redaction.v1.server.segmentation.PdfSegmentationService;
import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
import com.iqser.red.service.redaction.v1.server.visualization.service.AnnotationHighlightService;
import com.iqser.red.service.redaction.v1.server.visualization.service.PdfVisualisationService;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
import org.apache.pdfbox.io.MemoryUsageSetting;
import org.apache.pdfbox.pdmodel.PDDocument;
import org.springframework.web.bind.annotation.PathVariable;
import org.springframework.web.bind.annotation.RequestBody;
import org.springframework.web.bind.annotation.RestController;
import java.io.ByteArrayOutputStream;
import java.io.IOException;
@Slf4j
@RestController
@@ -35,128 +34,139 @@ import lombok.extern.slf4j.Slf4j;
public class RedactionController implements RedactionResource {
private final PdfVisualisationService pdfVisualisationService;
private final PdfSegmentationService pdfSegmentationService;
private final AnnotationHighlightService annotationHighlightService;
private final EntityRedactionService entityRedactionService;
private final DroolsExecutionService droolsExecutionService;
private final DictionaryService dictionaryService;
private final AnnotationService annotationService;
private final PdfSegmentationService pdfSegmentationService;
private final RedactionStorageService redactionStorageService;
public AnnotateResponse annotate(@RequestBody AnnotateRequest annotateRequest) {
var storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(annotateRequest.getProjectId(), annotateRequest.getFileId(), FileType.ORIGIN));
var redactionLog = redactionStorageService.getRedactionLog(annotateRequest.getProjectId(), annotateRequest.getFileId());
var sectionsGrid = redactionStorageService.getSectionGrid(annotateRequest.getProjectId(), annotateRequest.getFileId());
try (PDDocument pdDocument = PDDocument.load(storedObjectStream, MemoryUsageSetting.setupTempFileOnly())) {
pdDocument.setAllSecurityToBeRemoved(true);
dictionaryService.updateDictionary(redactionLog.getRuleSetId(), annotateRequest.getProjectId());
annotationService.annotate(pdDocument, redactionLog, sectionsGrid);
try (ByteArrayOutputStream byteArrayOutputStream = new ByteArrayOutputStream()) {
pdDocument.save(byteArrayOutputStream);
return AnnotateResponse.builder().document(byteArrayOutputStream.toByteArray()).build();
}
} catch (Exception e) {
throw new RedactionException(e);
}
}
@Override
public RedactionResult redact(@RequestBody RedactionRequest redactionRequest) {
public RedactionResult classify(@RequestBody RedactionRequest redactionRequest) {
var storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(redactionRequest.getProjectId(), redactionRequest.getFileId(), FileType.ORIGIN));
try {
Document classifiedDoc = pdfSegmentationService.parseDocument(storedObjectStream);
try (PDDocument pdDocument = PDDocument.load(new ByteArrayInputStream(redactionRequest.getDocument()))) {
pdDocument.setAllSecurityToBeRemoved(true);
storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(redactionRequest.getProjectId(), redactionRequest.getFileId(), FileType.ORIGIN));
try (PDDocument pdDocument = PDDocument.load(storedObjectStream)) {
pdDocument.setAllSecurityToBeRemoved(true);
Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
pdfVisualisationService.visualizeClassifications(classifiedDoc, pdDocument);
log.info("Document structure analysis successful, starting redaction analysis...");
return convert(pdDocument, classifiedDoc.getPages().size());
entityRedactionService.processDocument(classifiedDoc, redactionRequest.getManualRedactions());
annotationHighlightService.highlight(pdDocument, classifiedDoc, redactionRequest.isFlatRedaction(), redactionRequest
.getManualRedactions());
log.info("Redaction analysis successful...");
return convert(pdDocument, classifiedDoc.getPages()
.size(), classifiedDoc.getRedactionLogEntities(), classifiedDoc.getSectionGrid(), classifiedDoc.getDictionaryVersion(), classifiedDoc.getRulesVersion());
} catch (IOException e) {
throw new RedactionException(e);
}
} catch (IOException e) {
throw new RedactionException(e);
}
}
@Override
public RedactionResult classify(@RequestBody RedactionRequest pdfSegmentationRequest) {
try (PDDocument pdDocument = PDDocument.load(new ByteArrayInputStream(pdfSegmentationRequest.getDocument()))) {
pdDocument.setAllSecurityToBeRemoved(true);
Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
pdfVisualisationService.visualizeClassifications(classifiedDoc, pdDocument);
return convert(pdDocument, classifiedDoc.getPages().size());
} catch (IOException e) {
throw new RedactionException(e);
}
}
@Override
public RedactionResult sections(@RequestBody RedactionRequest redactionRequest) {
var storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(redactionRequest.getProjectId(), redactionRequest.getFileId(), FileType.ORIGIN));
try {
Document classifiedDoc = pdfSegmentationService.parseDocument(storedObjectStream);
try (PDDocument pdDocument = PDDocument.load(new ByteArrayInputStream(redactionRequest.getDocument()))) {
pdDocument.setAllSecurityToBeRemoved(true);
storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(redactionRequest.getProjectId(), redactionRequest.getFileId(), FileType.ORIGIN));
try (PDDocument pdDocument = PDDocument.load(storedObjectStream)) {
pdDocument.setAllSecurityToBeRemoved(true);
Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
pdfVisualisationService.visualizeParagraphs(classifiedDoc, pdDocument);
pdfVisualisationService.visualizeParagraphs(classifiedDoc, pdDocument);
return convert(pdDocument, classifiedDoc.getPages().size());
return convert(pdDocument, classifiedDoc.getPages().size());
} catch (IOException e) {
throw new RedactionException(e);
}
} catch (IOException e) {
throw new RedactionException(e);
}
}
@Override
public RedactionResult htmlTables(@RequestBody RedactionRequest redactionRequest) {
try (PDDocument pdDocument = PDDocument.load(new ByteArrayInputStream(redactionRequest.getDocument()))) {
pdDocument.setAllSecurityToBeRemoved(true);
Document classifiedDoc;
Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
StringBuilder sb = new StringBuilder();
for (Page page : classifiedDoc.getPages()) {
for (AbstractTextContainer textContainer : page.getTextBlocks()) {
if (textContainer instanceof Table) {
Table table = (Table) textContainer;
sb.append(table.getTextAsHtml()).append("<br />").append("<br />");
}
}
}
return RedactionResult.builder().document(sb.toString().getBytes()).build();
} catch (IOException e) {
try {
var storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(redactionRequest.getProjectId(), redactionRequest.getFileId(), FileType.ORIGIN));
classifiedDoc = pdfSegmentationService.parseDocument(storedObjectStream, true);
} catch (Exception e) {
throw new RedactionException(e);
}
StringBuilder sb = new StringBuilder();
for (Page page : classifiedDoc.getPages()) {
for (AbstractTextContainer textContainer : page.getTextBlocks()) {
if (textContainer instanceof Table) {
Table table = (Table) textContainer;
sb.append(table.getTextAsHtml()).append("<br />").append("<br />");
}
}
}
return RedactionResult.builder().document(sb.toString().getBytes()).build();
}
@Override
public void updateRules(@RequestBody String rules) {
public void updateRules(@PathVariable(RULE_SET_PARAMETER_NAME) String ruleSetId) {
droolsExecutionService.updateRules(rules);
droolsExecutionService.updateRules(ruleSetId);
}
@Override
public void testRules(@RequestBody String rules) {
droolsExecutionService.testRules(rules);
}
private RedactionResult convert(PDDocument document, int numberOfPages) throws IOException {
return convert(document, numberOfPages, null, null, 0, 0);
}
private RedactionResult convert(PDDocument document, int numberOfPages,
List<RedactionLogEntry> redactionLogEntities,
SectionGrid sectionGrid, long dictionaryVersion, long rulesVersion) throws IOException {
try (ByteArrayOutputStream byteArrayOutputStream = new ByteArrayOutputStream()) {
document.save(byteArrayOutputStream);
return RedactionResult.builder()
.document(byteArrayOutputStream.toByteArray())
.numberOfPages(numberOfPages)
.redactionLog(new RedactionLog(redactionLogEntities,dictionaryVersion, rulesVersion))
.sectionGrid(sectionGrid)
.build();
}
}
}
@@ -0,0 +1,52 @@
package com.iqser.red.service.redaction.v1.server.memory;
import lombok.extern.slf4j.Slf4j;
import java.text.CharacterIterator;
import java.text.StringCharacterIterator;
@Slf4j
public class MemoryStats {
public static void printMemoryStats() {
log.info("\n\n ------------------------------ \n" +
" Used Memory: " + humanReadableByteCountBin(getUsedMemory()) + "\n" +
" Free Memory: " + humanReadableByteCountBin(getFreeMemory()) + "\n" +
" Total Memory: " + humanReadableByteCountBin(getTotalMemory()) + "\n" +
" Max Memory: " + humanReadableByteCountBin(getMaxMemory()) + "\n" +
"\n ------------------------------ \n");
}
public static String humanReadableByteCountBin(long bytes) {
long absB = bytes == Long.MIN_VALUE ? Long.MAX_VALUE : Math.abs(bytes);
if (absB < 1024) {
return bytes + " B";
}
long value = absB;
CharacterIterator ci = new StringCharacterIterator("KMGTPE");
for (int i = 40; i >= 0 && absB > 0xfffccccccccccccL >> i; i -= 10) {
value >>= 10;
ci.next();
}
value *= Long.signum(bytes);
return String.format("%.1f %ciB", value / 1024.0, ci.current());
}
private static long getMaxMemory() {
return Runtime.getRuntime().maxMemory();
}
private static long getUsedMemory() {
return getMaxMemory() - getFreeMemory();
}
private static long getTotalMemory() {
return Runtime.getRuntime().totalMemory();
}
private static long getFreeMemory() {
return Runtime.getRuntime().freeMemory();
}
}
@@ -0,0 +1,81 @@
package com.iqser.red.service.redaction.v1.server.parsing;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import lombok.Getter;
import lombok.Setter;
import org.apache.pdfbox.text.PDFTextStripperByArea;
import org.apache.pdfbox.text.TextPosition;
import java.io.IOException;
import java.util.ArrayList;
import java.util.List;
public class PDFAreaTextStripper extends PDFTextStripperByArea {
@Getter
private List<TextPositionSequence> textPositionSequences = new ArrayList<>();
@Setter
private int pageNumber;
public PDFAreaTextStripper() throws IOException {
}
@Override
public void writeString(String text, List<TextPosition> textPositions) throws IOException {
int startIndex = 0;
for (int i = 0; i <= textPositions.size() - 1; i++) {
if (i == 0 && (textPositions.get(i).getUnicode().equals(" ") || textPositions.get(i)
.getUnicode()
.equals("\u00A0"))) {
startIndex++;
continue;
}
// Strange but sometimes this is happening, for example: Metolachlor2.pdf
if (i > 0 && textPositions.get(i).getX() < textPositions.get(i - 1).getX()) {
List<TextPosition> sublist = textPositions.subList(startIndex, i);
if (!(sublist.isEmpty() || sublist.size() == 1 && (sublist.get(0)
.getUnicode()
.equals(" ") || sublist.get(0).getUnicode().equals("\u00A0")))) {
textPositionSequences.add(new TextPositionSequence(sublist, pageNumber));
}
startIndex = i;
}
if (i > 0 && (textPositions.get(i).getUnicode().equals(" ") || textPositions.get(i)
.getUnicode()
.equals("\u00A0")) && i <= textPositions.size() - 2) {
List<TextPosition> sublist = textPositions.subList(startIndex, i);
if (!(sublist.isEmpty() || sublist.size() == 1 && (sublist.get(0)
.getUnicode()
.equals(" ") || sublist.get(0).getUnicode().equals("\u00A0")))) {
textPositionSequences.add(new TextPositionSequence(sublist, pageNumber));
}
startIndex = i + 1;
}
}
List<TextPosition> sublist = textPositions.subList(startIndex, textPositions.size());
if (!sublist.isEmpty() && (sublist.get(sublist.size() - 1)
.getUnicode()
.equals(" ") || sublist.get(sublist.size() - 1).getUnicode().equals("\u00A0"))) {
sublist = sublist.subList(0, sublist.size() - 1);
}
if (!(sublist.isEmpty() || sublist.size() == 1 && (sublist.get(0).getUnicode().equals(" ") || sublist.get(0)
.getUnicode()
.equals("\u00A0")))) {
textPositionSequences.add(new TextPositionSequence(sublist, pageNumber));
}
super.writeString(text);
}
public void clearPositions() {
textPositionSequences = new ArrayList<>();
}
}
@@ -1,61 +1,55 @@
package com.iqser.red.service.redaction.v1.server.parsing;
import java.awt.geom.Point2D;
import java.io.IOException;
import java.util.ArrayList;
import java.util.List;
import org.apache.pdfbox.contentstream.operator.Operator;
import org.apache.pdfbox.contentstream.operator.OperatorName;
import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingColor;
import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingColorN;
import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingColorSpace;
import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingDeviceCMYKColor;
import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingDeviceGrayColor;
import org.apache.pdfbox.contentstream.operator.color.SetNonStrokingDeviceRGBColor;
import org.apache.pdfbox.contentstream.operator.color.SetStrokingColor;
import org.apache.pdfbox.contentstream.operator.color.SetStrokingColorN;
import org.apache.pdfbox.contentstream.operator.color.SetStrokingColorSpace;
import org.apache.pdfbox.contentstream.operator.color.SetStrokingDeviceCMYKColor;
import org.apache.pdfbox.contentstream.operator.color.SetStrokingDeviceGrayColor;
import org.apache.pdfbox.contentstream.operator.color.SetStrokingDeviceRGBColor;
import org.apache.pdfbox.contentstream.operator.state.SetFlatness;
import org.apache.pdfbox.contentstream.operator.state.SetLineCapStyle;
import org.apache.pdfbox.contentstream.operator.state.SetLineDashPattern;
import org.apache.pdfbox.contentstream.operator.state.SetLineJoinStyle;
import org.apache.pdfbox.contentstream.operator.state.SetLineMiterLimit;
import org.apache.pdfbox.contentstream.operator.state.SetLineWidth;
import org.apache.pdfbox.contentstream.operator.state.SetRenderingIntent;
import org.apache.pdfbox.contentstream.operator.text.SetFontAndSize;
import org.apache.pdfbox.cos.COSBase;
import org.apache.pdfbox.cos.COSNumber;
import org.apache.pdfbox.pdmodel.PDDocument;
import org.apache.pdfbox.text.PDFTextStripper;
import org.apache.pdfbox.text.TextPosition;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.model.PdfImage;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Ruling;
import lombok.Getter;
import lombok.Setter;
import lombok.extern.slf4j.Slf4j;
import org.apache.commons.lang3.reflect.FieldUtils;
import org.apache.pdfbox.contentstream.operator.Operator;
import org.apache.pdfbox.contentstream.operator.OperatorName;
import org.apache.pdfbox.contentstream.operator.color.*;
import org.apache.pdfbox.contentstream.operator.state.*;
import org.apache.pdfbox.contentstream.operator.text.SetFontAndSize;
import org.apache.pdfbox.cos.COSBase;
import org.apache.pdfbox.cos.COSName;
import org.apache.pdfbox.cos.COSNumber;
import org.apache.pdfbox.pdmodel.PDDocument;
import org.apache.pdfbox.pdmodel.PDPage;
import org.apache.pdfbox.pdmodel.graphics.PDXObject;
import org.apache.pdfbox.pdmodel.graphics.image.PDImageXObject;
import org.apache.pdfbox.text.PDFTextStripper;
import org.apache.pdfbox.text.TextPosition;
import org.apache.pdfbox.util.Matrix;
import java.awt.geom.AffineTransform;
import java.awt.geom.Point2D;
import java.awt.geom.Rectangle2D;
import java.io.IOException;
import java.util.ArrayList;
import java.util.List;
@Slf4j
public class PDFLinesTextStripper extends PDFTextStripper {
@Getter
private int maxCharWidths;
@Getter
private int maxCharHeight;
@Getter
private final List<TextPositionSequence> textPositionSequences = new ArrayList<>();
@Getter
private final List<Ruling> rulings = new ArrayList<>();
private final List<Ruling> graphicsPath = new ArrayList<>();
@Setter
protected PDPage pdpage;
@Getter
private int minCharWidth;
@Getter
private int maxCharWidth;
@Getter
private int minCharHeight;
@Getter
private int maxCharHeight;
@Getter
private List<PdfImage> images = new ArrayList<>();
private float path_x;
private float path_y;
@@ -63,7 +57,9 @@ public class PDFLinesTextStripper extends PDFTextStripper {
@Setter
private int pageNumber;
public PDFLinesTextStripper() throws IOException {
super();
this.addOperator(new SetStrokingColorSpace());
this.addOperator(new SetNonStrokingColorSpace());
@@ -87,9 +83,9 @@ public class PDFLinesTextStripper extends PDFTextStripper {
this.addOperator(new SetLineWidth());
}
@Override
protected void processOperator(Operator operator, List<COSBase> arguments)
throws IOException {
protected void processOperator(Operator operator, List<COSBase> arguments) throws IOException {
String operation = operator.getName();
@@ -110,9 +106,11 @@ public class PDFLinesTextStripper extends PDFTextStripper {
// The direction of vertical lines must always be from bottom to top for the table extraction algorithm.
if (pos.getY() > path_y) {
graphicsPath.add(new Ruling(new Point2D.Float(path_x, path_y), new Point2D.Float((float) pos.getX(), (float) pos.getY())));
graphicsPath.add(new Ruling(new Point2D.Float(path_x, path_y), new Point2D.Float((float) pos.getX(), (float) pos
.getY())));
} else {
graphicsPath.add(new Ruling(new Point2D.Float(path_x, (float) pos.getY()), new Point2D.Float((float) pos.getX(), path_y)));
graphicsPath.add(new Ruling(new Point2D.Float(path_x, (float) pos.getY()), new Point2D.Float((float) pos
.getX(), path_y)));
}
path_x = (float) pos.getX();
@@ -133,19 +131,25 @@ public class PDFLinesTextStripper extends PDFTextStripper {
Point2D p2 = transformPosition(x + width, y + height);
// Horizontal lines
graphicsPath.add(new Ruling(new Point2D.Float((float) p1.getX(), (float) p1.getY()), new Point2D.Float((float) p2.getX(), (float) p1.getY())));
graphicsPath.add(new Ruling(new Point2D.Float((float) p1.getX(), (float) p2.getY()), new Point2D.Float((float) p2.getX(), (float) p2.getY())));
graphicsPath.add(new Ruling(new Point2D.Float((float) p1.getX(), (float) p1.getY()), new Point2D.Float((float) p2
.getX(), (float) p1.getY())));
graphicsPath.add(new Ruling(new Point2D.Float((float) p1.getX(), (float) p2.getY()), new Point2D.Float((float) p2
.getX(), (float) p2.getY())));
// Vertical lines, direction must always be from bottom to top for the table extraction algorithm.
if (p2.getY() > p1.getY()) {
graphicsPath.add(new Ruling(new Point2D.Float((float) p2.getX(), (float) p1.getY()), new Point2D.Float((float) p2.getX(), (float) p2.getY())));
graphicsPath.add(new Ruling(new Point2D.Float((float) p2.getX(), (float) p1.getY()), new Point2D.Float((float) p2
.getX(), (float) p2.getY())));
} else {
graphicsPath.add(new Ruling(new Point2D.Float((float) p2.getX(), (float) p2.getY()), new Point2D.Float((float) p2.getX(), (float) p1.getY())));
graphicsPath.add(new Ruling(new Point2D.Float((float) p2.getX(), (float) p2.getY()), new Point2D.Float((float) p2
.getX(), (float) p1.getY())));
}
if (p2.getY() > p1.getY()) {
graphicsPath.add(new Ruling(new Point2D.Float((float) p1.getX(), (float) p1.getY()), new Point2D.Float((float) p1.getX(), (float) p2.getY())));
graphicsPath.add(new Ruling(new Point2D.Float((float) p1.getX(), (float) p1.getY()), new Point2D.Float((float) p1
.getX(), (float) p2.getY())));
} else {
graphicsPath.add(new Ruling(new Point2D.Float((float) p1.getX(), (float) p2.getY()), new Point2D.Float((float) p1.getX(), (float) p1.getY())));
graphicsPath.add(new Ruling(new Point2D.Float((float) p1.getX(), (float) p2.getY()), new Point2D.Float((float) p1
.getX(), (float) p1.getY())));
}
}
break;
@@ -168,12 +172,62 @@ public class PDFLinesTextStripper extends PDFTextStripper {
case OperatorName.ENDPATH:
graphicsPath.clear();
break;
case OperatorName.DRAW_OBJECT:
processImageOperation(arguments);
break;
}
super.processOperator(operator, arguments);
}
protected void processImageOperation(List<COSBase> arguments) {
try {
COSName objectName = (COSName) arguments.get(0);
PDXObject xobject = getResources().getXObject(objectName);
if (xobject instanceof PDImageXObject) {
PDImageXObject pdfImage = (PDImageXObject) xobject;
Rectangle2D imageBounds = calculateImagePosition(pdfImage);
Rectangle2D rect = new Rectangle2D.Float((float) imageBounds.getX(), (float) imageBounds.getY(), (float) imageBounds
.getWidth(), (float) imageBounds.getHeight());
// Memory Hack - sofReference kills me
FieldUtils.writeField(pdfImage, "cachedImageSubsampling", -1, true);
if (rect.getHeight() > 2 && rect.getWidth() > 2) {
this.images.add(new PdfImage(pdfImage.getImage(), rect, pageNumber));
}
}
} catch (Exception e) {
log.warn("Problem during image extraction: {}", e.getMessage());
}
}
private Rectangle2D calculateImagePosition(PDImageXObject pdfImage) throws IOException {
Matrix ctm = getGraphicsState().getCurrentTransformationMatrix();
Rectangle2D imageBounds = pdfImage.getImage().getRaster().getBounds();
AffineTransform imageTransform = new AffineTransform(ctm.createAffineTransform());
imageTransform.scale(1.0 / pdfImage.getWidth(), -1.0 / pdfImage.getHeight());
imageTransform.translate(0, -pdfImage.getHeight());
AffineTransform pageTransform = new AffineTransform();
pageTransform.concatenate(imageTransform);
return pageTransform.createTransformedShape(imageBounds).getBounds2D();
}
private float floatValue(COSBase value) {
if (value instanceof COSNumber) {
return ((COSNumber) value).floatValue();
} else {
@@ -181,38 +235,56 @@ public class PDFLinesTextStripper extends PDFTextStripper {
}
}
private Point2D.Float transformPosition(float x, float y) {
return super.transformedPoint(x, y);
}
private void addVisibleRulings(List<Ruling> path, boolean stroke) throws IOException {
try {
if (stroke && !getGraphicsState().getStrokingColor().isPattern() && getGraphicsState().getStrokingColor().toRGB() == 0 || !stroke && !getGraphicsState().getNonStrokingColor().isPattern() && getGraphicsState().getNonStrokingColor().toRGB() == 0) {
if (stroke && !getGraphicsState().getStrokingColor().isPattern() && getGraphicsState().getStrokingColor()
.toRGB() == 0 || !stroke && !getGraphicsState().getNonStrokingColor()
.isPattern() && getGraphicsState().getNonStrokingColor().toRGB() == 0) {
rulings.addAll(path);
}
} catch (UnsupportedOperationException e) {
log.error("UnsupportedOperationException: " + getGraphicsState().getStrokingColor().getColorSpace().getName() + " or " + getGraphicsState().getNonStrokingColor().getColorSpace().getName() + " does not support toRGB");
log.error("UnsupportedOperationException: " + getGraphicsState().getStrokingColor()
.getColorSpace()
.getName() + " or " + getGraphicsState().getNonStrokingColor()
.getColorSpace()
.getName() + " does not support toRGB");
}
}
@Override
public void writeString(String text, List<TextPosition> textPositions) throws IOException {
int startIndex = 0;
for (int i = 0; i <= textPositions.size() - 1; i++) {
int charWidth = (int) textPositions.get(i).getWidthDirAdj();
if (charWidth < minCharWidth) {
minCharWidth = charWidth;
}
if (charWidth > maxCharWidth) {
maxCharWidth = charWidth;
}
int charHeight = (int) textPositions.get(i).getHeightDir();
if(charHeight > maxCharHeight){
if (charHeight < minCharHeight) {
minCharHeight = charHeight;
}
if (charWidth > maxCharHeight) {
maxCharHeight = charHeight;
}
int charWidth = (int) textPositions.get(i).getWidthDirAdj();
if(charWidth > maxCharWidths){
maxCharWidths = charWidth;
}
if (i == 0 && textPositions.get(i).getUnicode().equals(" ")) {
if (i == 0 && (textPositions.get(i).getUnicode().equals(" ") || textPositions.get(i)
.getUnicode()
.equals("\u00A0"))) {
startIndex++;
continue;
}
@@ -220,15 +292,21 @@ public class PDFLinesTextStripper extends PDFTextStripper {
// Strange but sometimes this is happening, for example: Metolachlor2.pdf
if (i > 0 && textPositions.get(i).getX() < textPositions.get(i - 1).getX()) {
List<TextPosition> sublist = textPositions.subList(startIndex, i);
if (!(sublist.isEmpty() || sublist.size() == 1 && sublist.get(0).getUnicode().equals(" "))) {
if (!(sublist.isEmpty() || sublist.size() == 1 && (sublist.get(0)
.getUnicode()
.equals(" ") || sublist.get(0).getUnicode().equals("\u00A0")))) {
textPositionSequences.add(new TextPositionSequence(sublist, pageNumber));
}
startIndex = i;
}
if (i > 0 && textPositions.get(i).getUnicode().equals(" ") && i <= textPositions.size() - 2) {
if (i > 0 && (textPositions.get(i).getUnicode().equals(" ") || textPositions.get(i)
.getUnicode()
.equals("\u00A0")) && i <= textPositions.size() - 2) {
List<TextPosition> sublist = textPositions.subList(startIndex, i);
if (!(sublist.isEmpty() || sublist.size() == 1 && sublist.get(0).getUnicode().equals(" "))) {
if (!(sublist.isEmpty() || sublist.size() == 1 && (sublist.get(0)
.getUnicode()
.equals(" ") || sublist.get(0).getUnicode().equals("\u00A0")))) {
textPositionSequences.add(new TextPositionSequence(sublist, pageNumber));
}
startIndex = i + 1;
@@ -236,22 +314,29 @@ public class PDFLinesTextStripper extends PDFTextStripper {
}
List<TextPosition> sublist = textPositions.subList(startIndex, textPositions.size());
if (!sublist.isEmpty() && sublist.get(sublist.size() - 1).getUnicode().equals(" ")) {
if (!sublist.isEmpty() && (sublist.get(sublist.size() - 1)
.getUnicode()
.equals(" ") || sublist.get(sublist.size() - 1).getUnicode().equals("\u00A0"))) {
sublist = sublist.subList(0, sublist.size() - 1);
}
if (!(sublist.isEmpty() || sublist.size() == 1 && sublist.get(0).getUnicode().equals(" "))) {
if (!(sublist.isEmpty() || sublist.size() == 1 && (sublist.get(0).getUnicode().equals(" ") || sublist.get(0)
.getUnicode()
.equals("\u00A0")))) {
textPositionSequences.add(new TextPositionSequence(sublist, pageNumber));
}
super.writeString(text);
}
@Override
public String getText(PDDocument doc) throws IOException {
maxCharWidths = 0;
maxCharWidths = 0;
minCharWidth = Integer.MAX_VALUE;
maxCharWidth = 0;
minCharHeight = Integer.MAX_VALUE;
maxCharHeight = 0;
textPositionSequences.clear();
images = new ArrayList<>();
rulings.clear();
graphicsPath.clear();
path_x = 0.0f;
@@ -261,4 +346,4 @@ public class PDFLinesTextStripper extends PDFTextStripper {
}
}
}
@@ -1,22 +0,0 @@
package com.iqser.red.service.redaction.v1.server.parsing.model;
import java.util.List;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Ruling;
import lombok.Builder;
import lombok.Data;
@Data
@Builder
public class ParsedElements {
private List<TextPositionSequence> sequences;
private List<Ruling> rulings;
private boolean landscape;
private boolean rotated;
private float maxCharWidth;
private float maxCharHeight;
}
@@ -0,0 +1,52 @@
package com.iqser.red.service.redaction.v1.server.parsing.model;
import com.fasterxml.jackson.annotation.JsonIgnore;
import lombok.Data;
import lombok.NoArgsConstructor;
import lombok.SneakyThrows;
import org.apache.pdfbox.text.TextPosition;
import org.springframework.beans.BeanUtils;
@Data
@NoArgsConstructor
public class RedTextPosition {
private String textMatrix;
private int rotation;
private float y;
private float pageHeight;
private float pageWidth;
private String unicode;
private float XDirAdj;
private float YDirAdj;
private float width;
private float heightDir;
// not used in reanalysis
@JsonIgnore
private float widthOfSpace;
// not used in reanalysis
@JsonIgnore
private float fontSizeInPt;
// not used in reanalysis
@JsonIgnore
private String fontName;
@SneakyThrows
public static RedTextPosition fromTextPosition(TextPosition textPosition) {
var pos = new RedTextPosition();
BeanUtils.copyProperties(textPosition, pos);
pos.setFontName(textPosition.getFont().getName());
pos.setFontSizeInPt(textPosition.getFontSizeInPt());
pos.setTextMatrix(textPosition.getTextMatrix().toString());
return pos;
}
}
@@ -1,32 +1,52 @@
package com.iqser.red.service.redaction.v1.server.parsing.model;
import com.fasterxml.jackson.annotation.JsonIgnore;
import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
import com.iqser.red.service.redaction.v1.model.Point;
import com.iqser.red.service.redaction.v1.model.Rectangle;
import lombok.Data;
import lombok.NoArgsConstructor;
import org.apache.pdfbox.text.TextPosition;
import java.util.ArrayList;
import java.util.List;
import org.apache.pdfbox.text.TextPosition;
import com.iqser.red.service.redaction.v1.model.Point;
import com.iqser.red.service.redaction.v1.model.Rectangle;
import lombok.Data;
import lombok.RequiredArgsConstructor;
import java.util.stream.Collectors;
@Data
@RequiredArgsConstructor
@NoArgsConstructor
@JsonIgnoreProperties({ "empty" })
public class TextPositionSequence implements CharSequence {
private List<TextPosition> textPositions = new ArrayList<>();
private int page;
private List<RedTextPosition> textPositions = new ArrayList<>();
private final int page;
private float x1;
private float x2;
public TextPositionSequence(int page) {
this.page = page;
}
public static TextPositionSequence fromData(List<RedTextPosition> textPositions, int page) {
var textPositionSequence = new TextPositionSequence();
textPositionSequence.textPositions = textPositions;
textPositionSequence.page = page;
return textPositionSequence;
}
public TextPositionSequence(List<TextPosition> textPositions, int page) {
this.textPositions = textPositions;
this.textPositions = textPositions.stream().map(RedTextPosition::fromTextPosition).collect(Collectors.toList());
this.page = page;
}
@Override
public int length() {
@@ -37,7 +57,7 @@ public class TextPositionSequence implements CharSequence {
@Override
public char charAt(int index) {
TextPosition textPosition = textPositionAt(index);
RedTextPosition textPosition = textPositionAt(index);
String text = textPosition.getUnicode();
return text.charAt(0);
}
@@ -45,7 +65,7 @@ public class TextPositionSequence implements CharSequence {
public char charAt(int index, boolean caseInSensitive) {
TextPosition textPosition = textPositionAt(index);
RedTextPosition textPosition = textPositionAt(index);
String text = textPosition.getUnicode();
return caseInSensitive ? text.toLowerCase().charAt(0) : text.charAt(0);
}
@@ -54,7 +74,7 @@ public class TextPositionSequence implements CharSequence {
@Override
public TextPositionSequence subSequence(int start, int end) {
return new TextPositionSequence(textPositions.subList(start, end), page);
return fromData(textPositions.subList(start, end), page);
}
@@ -69,18 +89,25 @@ public class TextPositionSequence implements CharSequence {
}
public TextPosition textPositionAt(int index) {
public RedTextPosition textPositionAt(int index) {
return textPositions.get(index);
}
public void add(TextPosition textPosition) {
public void add(RedTextPosition textPosition) {
this.textPositions.add(textPosition);
}
public void add(TextPosition textPosition) {
this.textPositions.add(RedTextPosition.fromTextPosition(textPosition));
}
@JsonIgnore
public float getX1() {
if (textPositions.get(0).getRotation() == 90) {
@@ -91,6 +118,7 @@ public class TextPositionSequence implements CharSequence {
}
@JsonIgnore
public float getX2() {
if (textPositions.get(0).getRotation() == 90) {
@@ -101,10 +129,14 @@ public class TextPositionSequence implements CharSequence {
}
}
@JsonIgnore
public float getRotationAdjustedY() {
return textPositions.get(0).getY();
}
@JsonIgnore
public float getY1() {
if (textPositions.get(0).getRotation() == 90) {
@@ -115,6 +147,7 @@ public class TextPositionSequence implements CharSequence {
}
@JsonIgnore
public float getY2() {
if (textPositions.get(0).getRotation() == 90) {
@@ -125,38 +158,40 @@ public class TextPositionSequence implements CharSequence {
}
@JsonIgnore
public float getTextHeight() {
return textPositions.get(0).getHeightDir() + 2;
}
@JsonIgnore
public float getHeight() {
return getY2() - getY1();
}
@JsonIgnore
public float getWidth() {
return getX2() - getX1();
}
@JsonIgnore
public String getFont() {
return textPositions.get(0)
.getFont()
.toString()
return textPositions.get(0).getFontName()
.toLowerCase()
.replaceAll(",bold", "")
.replaceAll(",italic", "");
}
@JsonIgnore
public String getFontStyle() {
String lowercaseFontName = textPositions.get(0).getFont().toString().toLowerCase();
String lowercaseFontName = textPositions.get(0).getFontName().toLowerCase();
if (lowercaseFontName.contains("bold") && lowercaseFontName.contains("italic")) {
return "bold, italic";
@@ -170,25 +205,25 @@ public class TextPositionSequence implements CharSequence {
}
@JsonIgnore
public float getFontSize() {
return textPositions.get(0).getFontSizeInPt();
}
@JsonIgnore
public float getSpaceWidth() {
return textPositions.get(0).getWidthOfSpace();
}
@JsonIgnore
public int getRotation() {
return textPositions.get(0).getRotation();
}
@JsonIgnore
public Rectangle getRectangle() {
float height = getTextHeight();
@@ -202,6 +237,13 @@ public class TextPositionSequence implements CharSequence {
posXEnd = textPositions.get(0).getYDirAdj() + 2;
posYInit = getY1();
posYEnd = textPositions.get(textPositions.size() - 1).getXDirAdj() - height + 4;
} else if (textPositions.get(0).getRotation() == 270) {
posYInit = textPositions.get(0).getPageHeight() - getX1();
posYEnd = textPositions.get(0).getPageHeight() - getX2() - textPositions.get(0)
.getWidth() - textPositions.get(textPositions.size() - 1).getWidth() - 1;
posXInit = textPositions.get(0).getPageWidth() - textPositions.get(0).getYDirAdj() - 2;
posXEnd = textPositions.get(0).getPageWidth() - textPositions.get(textPositions.size() - 1)
.getYDirAdj() + height;
} else {
posXEnd = textPositions.get(textPositions.size() - 1)
.getXDirAdj() + textPositions.get(textPositions.size() - 1).getWidth() + 1;
@@ -213,5 +255,4 @@ public class TextPositionSequence implements CharSequence {
return new Rectangle(new Point(posXInit, posYInit), posXEnd - posXInit, posYEnd - posYInit + height, page);
}
}
}
@@ -0,0 +1,35 @@
package com.iqser.red.service.redaction.v1.server.queue;
import lombok.RequiredArgsConstructor;
import org.springframework.amqp.core.Queue;
import org.springframework.amqp.core.QueueBuilder;
import org.springframework.context.annotation.Bean;
import org.springframework.context.annotation.Configuration;
@Configuration
@RequiredArgsConstructor
public class MessagingConfiguration {
public static final String REDACTION_QUEUE = "redactionQueue";
public static final String REDACTION_DQL = "redactionDQL";
@Bean
public Queue redactionQueue() {
return QueueBuilder.durable(REDACTION_QUEUE)
.withArgument("x-dead-letter-exchange", "")
.withArgument("x-dead-letter-routing-key", REDACTION_QUEUE)
.maxPriority(2)
.build();
}
@Bean
public Queue redactionDeadLetterQueue() {
return QueueBuilder.durable(REDACTION_DQL).build();
}
}
@@ -0,0 +1,54 @@
package com.iqser.red.service.redaction.v1.server.queue;
import com.fasterxml.jackson.core.JsonProcessingException;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.iqser.red.service.redaction.v1.model.AnalyzeRequest;
import com.iqser.red.service.redaction.v1.model.AnalyzeResult;
import com.iqser.red.service.redaction.v1.server.client.FileStatusProcessingUpdateClient;
import com.iqser.red.service.redaction.v1.server.redaction.service.ReanalyzeService;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
import org.springframework.amqp.rabbit.annotation.RabbitHandler;
import org.springframework.amqp.rabbit.annotation.RabbitListener;
import org.springframework.stereotype.Service;
import static com.iqser.red.service.redaction.v1.server.queue.MessagingConfiguration.REDACTION_DQL;
import static com.iqser.red.service.redaction.v1.server.queue.MessagingConfiguration.REDACTION_QUEUE;
@Slf4j
@Service
@RequiredArgsConstructor
public class RedactionMessageReceiver {
private final ObjectMapper objectMapper;
private final ReanalyzeService reanalyzeService;
private final FileStatusProcessingUpdateClient fileStatusProcessingUpdateClient;
@RabbitHandler
@RabbitListener(queues = REDACTION_QUEUE)
public void receiveAnalyzeRequest(String in) throws JsonProcessingException {
var analyzeRequest = objectMapper.readValue(in, AnalyzeRequest.class);
log.info("Processing analyze request: {}", analyzeRequest);
AnalyzeResult result;
if (analyzeRequest.isReanalyseOnlyIfPossible()) {
result = reanalyzeService.reanalyze(analyzeRequest);
} else {
result = reanalyzeService.analyze(analyzeRequest);
}
log.info("Successfully analyzed {}", analyzeRequest);
fileStatusProcessingUpdateClient.analysisSuccessful(analyzeRequest.getProjectId(), analyzeRequest.getFileId(), result);
}
@RabbitHandler
@RabbitListener(queues = REDACTION_DQL)
public void receiveAnalyzeRequestDQL(String in) throws JsonProcessingException {
var analyzeRequest = objectMapper.readValue(in, AnalyzeRequest.class);
log.info("Failed to process analyze request: {}", analyzeRequest);
fileStatusProcessingUpdateClient.analysisFailed(analyzeRequest.getProjectId(), analyzeRequest.getFileId());
}
}
@@ -1,22 +1,25 @@
package com.iqser.red.service.redaction.v1.server.redaction.model;
import java.util.Iterator;
import java.util.List;
import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.utils.TextNormalizationUtilities;
import lombok.AllArgsConstructor;
import lombok.Data;
import lombok.NoArgsConstructor;
import lombok.Value;
import java.util.ArrayList;
import java.util.Iterator;
import java.util.List;
@Value
@Data
@NoArgsConstructor
@AllArgsConstructor
public class CellValue {
private List<TextBlock> textBlocks;
private List<TextBlock> textBlocks = new ArrayList<>();
private int rowSpanStart;
@Override
public String toString() {
@@ -47,4 +50,4 @@ public class CellValue {
.replaceAll(" {2}", " ");
}
}
}
@@ -1,13 +1,13 @@
package com.iqser.red.service.redaction.v1.server.redaction.model;
import lombok.Data;
import lombok.Getter;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.Set;
import lombok.Data;
import lombok.Getter;
@Data
public class Dictionary {
@@ -18,13 +18,21 @@ public class Dictionary {
private Map<String, DictionaryModel> localAccessMap = new HashMap<>();
@Getter
private long version;
private DictionaryVersion version;
public Dictionary(List<DictionaryModel> dictionaryModels, long dictionaryVersion){
public Dictionary(List<DictionaryModel> dictionaryModels, DictionaryVersion version) {
this.dictionaryModels = dictionaryModels;
this.dictionaryModels.forEach(dm -> localAccessMap.put(dm.getType(), dm));
this.version = dictionaryVersion;
this.version = version;
}
public int getDictionaryRank(String type) {
if (!localAccessMap.containsKey(type)) {
return 0;
}
return localAccessMap.get(type).getRank();
}
@@ -52,7 +60,7 @@ public class Dictionary {
public boolean containsValue(String type, String value) {
if (localAccessMap.containsKey(type) && localAccessMap.get(type)
return localAccessMap.containsKey(type) && localAccessMap.get(type)
.getEntries()
.contains(value) || localAccessMap.containsKey(type) && localAccessMap.get(type)
.getLocalEntries()
@@ -60,10 +68,7 @@ public class Dictionary {
.getEntries()
.contains(value) || localAccessMap.containsKey(RECOMMENDATION_PREFIX + type) && localAccessMap.get(RECOMMENDATION_PREFIX + type)
.getLocalEntries()
.contains(value)) {
return true;
}
return false;
.contains(value);
}
@@ -0,0 +1,15 @@
package com.iqser.red.service.redaction.v1.server.redaction.model;
import lombok.AllArgsConstructor;
import lombok.Data;
import java.util.Set;
@Data
@AllArgsConstructor
public class DictionaryIncrement {
private Set<DictionaryIncrementValue> values;
private DictionaryVersion dictionaryVersion;
}
@@ -0,0 +1,13 @@
package com.iqser.red.service.redaction.v1.server.redaction.model;
import lombok.AllArgsConstructor;
import lombok.Data;
@Data
@AllArgsConstructor
public class DictionaryIncrementValue {
private String value;
private boolean caseinsensitive;
}
@@ -1,12 +1,14 @@
package com.iqser.red.service.redaction.v1.server.redaction.model;
import java.io.Serializable;
import java.util.Set;
import com.iqser.red.service.configuration.v1.api.model.DictionaryEntry;
import lombok.AllArgsConstructor;
import lombok.Data;
import java.io.Serializable;
import java.util.Set;
import java.util.stream.Collectors;
@Data
@AllArgsConstructor
public class DictionaryModel implements Serializable {
@@ -17,11 +19,13 @@ public class DictionaryModel implements Serializable {
private boolean caseInsensitive;
private boolean hint;
private boolean recommendation;
private Set<String> entries;
private Set<DictionaryEntry> entries;
private Set<String> localEntries;
private boolean isDossierDictionary;
public Set<String> getValues(boolean local){
return local ? localEntries : entries;
public Set<String> getValues(boolean local) {
return local ? localEntries : entries.stream().filter(e -> !e.isDeleted()).map(e -> e.getValue()).collect(Collectors
.toSet());
}
}
@@ -0,0 +1,23 @@
package com.iqser.red.service.redaction.v1.server.redaction.model;
import lombok.Data;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
@Data
public class DictionaryRepresentation {
private String ruleSetId;
private long dictionaryVersion = -1;
private List<DictionaryModel> dictionary = new ArrayList<>();
private float[] defaultColor;
private float[] requestAddColor;
private float[] requestRemoveColor;
private float[] notRedactedColor;
private Map<String, DictionaryModel> localAccessMap = new HashMap<>();
}
@@ -0,0 +1,16 @@
package com.iqser.red.service.redaction.v1.server.redaction.model;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@Builder
@NoArgsConstructor
@AllArgsConstructor
public class DictionaryVersion {
long rulesetVersion;
long dossierVersion;
}
@@ -1,13 +1,12 @@
package com.iqser.red.service.redaction.v1.server.redaction.model;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import lombok.Data;
import lombok.EqualsAndHashCode;
import java.util.ArrayList;
import java.util.List;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import lombok.Data;
import lombok.EqualsAndHashCode;
@Data
@EqualsAndHashCode(onlyExplicitlyIncluded = true)
public class Entity {
@@ -38,8 +37,10 @@ public class Entity {
private String textBefore;
private String textAfter;
private boolean isDossierDictionaryEntry;
public Entity(String word, String type, boolean redaction, String redactionReason, List<EntityPositionSequence> positionSequences, String headline, int matchedRule, int sectionNumber, String legalBasis, boolean isDictionaryEntry, String textBefore, String textAfter) {
public Entity(String word, String type, boolean redaction, String redactionReason, List<EntityPositionSequence> positionSequences, String headline, int matchedRule, int sectionNumber, String legalBasis, boolean isDictionaryEntry, String textBefore, String textAfter, Integer start, Integer end, boolean isDossierDictionaryEntry) {
this.word = word;
this.type = type;
@@ -53,10 +54,13 @@ public class Entity {
this.isDictionaryEntry = isDictionaryEntry;
this.textBefore = textBefore;
this.textAfter = textAfter;
this.start = start;
this.end = end;
this.isDossierDictionaryEntry = isDossierDictionaryEntry;
}
public Entity(String word, String type, Integer start, Integer end, String headline, int sectionNumber, boolean isDictionaryEntry) {
public Entity(String word, String type, Integer start, Integer end, String headline, int sectionNumber, boolean isDictionaryEntry, boolean isDossierDictionaryEntry) {
this.word = word;
this.type = type;
@@ -65,6 +69,7 @@ public class Entity {
this.headline = headline;
this.sectionNumber = sectionNumber;
this.isDictionaryEntry = isDictionaryEntry;
this.isDossierDictionaryEntry = isDossierDictionaryEntry;
}
}
@@ -1,24 +1,23 @@
package com.iqser.red.service.redaction.v1.server.redaction.model;
import java.util.ArrayList;
import java.util.List;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import lombok.AllArgsConstructor;
import lombok.Data;
import lombok.EqualsAndHashCode;
import lombok.RequiredArgsConstructor;
import java.util.ArrayList;
import java.util.List;
@Data
@RequiredArgsConstructor
@AllArgsConstructor
@EqualsAndHashCode
public class EntityPositionSequence {
private final String id;
@EqualsAndHashCode.Exclude
private List<TextPositionSequence> sequences = new ArrayList<>();
private int pageNumber;
private final String id;
}
@@ -0,0 +1,24 @@
package com.iqser.red.service.redaction.v1.server.redaction.model;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@Builder
@NoArgsConstructor
@AllArgsConstructor
public class Image {
private String type;
private RedRectangle2D position;
private boolean redaction;
private String redactionReason;
private String legalBasis;
private int matchedRule;
private int sectionNumber;
private String section;
private int page;
}
@@ -0,0 +1,5 @@
package com.iqser.red.service.redaction.v1.server.redaction.model;
public enum ImageType {
LOGO, FORMULA, SIGNATURE, OTHER, OCR
}
@@ -0,0 +1,31 @@
package com.iqser.red.service.redaction.v1.server.redaction.model;
import com.fasterxml.jackson.annotation.JsonIgnore;
import lombok.Data;
import lombok.NonNull;
import lombok.RequiredArgsConstructor;
import java.awt.geom.Rectangle2D;
import java.awt.image.BufferedImage;
@Data
@RequiredArgsConstructor
public class PdfImage {
@JsonIgnore
private BufferedImage image;
@NonNull
private RedRectangle2D position;
private ImageType imageType;
private boolean isAppendedToParagraph;
@NonNull
private int page;
public PdfImage(BufferedImage image, Rectangle2D position, int page) {
this.image = image;
this.position = new RedRectangle2D(position.getX(), position.getY(), position.getWidth(), position.getHeight());
this.page = page;
}
}
@@ -0,0 +1,35 @@
package com.iqser.red.service.redaction.v1.server.redaction.model;
import com.fasterxml.jackson.annotation.JsonIgnore;
import lombok.AllArgsConstructor;
import lombok.Data;
import lombok.NoArgsConstructor;
@Data
@NoArgsConstructor
@AllArgsConstructor
public class RedRectangle2D {
private double x;
private double y;
private double width;
private double height;
@JsonIgnore
public boolean isEmpty() {
return width <= 0.0f || height <= 0.0f;
}
public boolean contains(double x, double y, double w, double h) {
if (isEmpty() || w <= 0 || h <= 0) {
return false;
}
double x0 = getX();
double y0 = getY();
return x >= x0 &&
y >= y0 &&
(x + w) <= x0 + getWidth() &&
(y + h) <= y0 + getHeight();
}
}
@@ -1,14 +1,14 @@
package com.iqser.red.service.redaction.v1.server.redaction.model;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.utils.IdBuilder;
import com.iqser.red.service.redaction.v1.server.redaction.utils.TextNormalizationUtilities;
import java.util.ArrayList;
import java.util.Collections;
import java.util.List;
import java.util.regex.Pattern;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.utils.IdBuilder;
import com.iqser.red.service.redaction.v1.server.redaction.utils.TextNormalizationUtilities;
public class SearchableText {
private final List<TextPositionSequence> sequences = new ArrayList<>();
@@ -32,6 +32,7 @@ public class SearchableText {
}
@SuppressWarnings("checkstyle:ModifiedControlVariable")
public List<EntityPositionSequence> getSequences(String searchString, boolean caseInsensitive,
List<TextPositionSequence> sequencesSubList) {
@@ -66,9 +67,12 @@ public class SearchableText {
for (int j = 0; j < searchSpace.get(i).length(); j++) {
if (i > 0 && j == 0 && searchSpace.get(i).charAt(0, caseInsensitive) == ' ' && searchSpace.get(i - 1)
.charAt(searchSpace.get(i - 1).length() - 1, caseInsensitive) == ' ' || j > 0 && searchSpace.get(i)
.charAt(j, caseInsensitive) == ' ' && searchSpace.get(i).charAt(j - 1, caseInsensitive) == ' ') {
if (j == searchSpace.get(i).length() - 1 && counter != 0 && !partMatch.getTextPositions().isEmpty()) {
.charAt(searchSpace.get(i - 1)
.length() - 1, caseInsensitive) == ' ' || j > 0 && searchSpace.get(i)
.charAt(j, caseInsensitive) == ' ' && searchSpace.get(i)
.charAt(j - 1, caseInsensitive) == ' ') {
if (j == searchSpace.get(i).length() - 1 && counter != 0 && !partMatch.getTextPositions()
.isEmpty()) {
crossSequenceParts.add(partMatch);
}
continue;
@@ -80,8 +84,8 @@ public class SearchableText {
counter++;
}
if (searchSpace.get(i)
.charAt(j, caseInsensitive) == searchChars[counter] || counter != 0 && searchSpace.get(i)
if (searchSpace.get(i).charAt(j, caseInsensitive) == searchChars[counter] || counter != 0 && searchSpace
.get(i)
.charAt(j, caseInsensitive) == '-') {
if (counter != 0 || i == 0 && j == 0 || j != 0 && isSeparator(searchSpace.get(i)
@@ -100,14 +104,15 @@ public class SearchableText {
if (counter == searchString.length()) {
crossSequenceParts.add(partMatch);
if (i == searchSpace.size() - 1 && j == searchSpace.get(i).length() - 1 || j != searchSpace.get(i)
.length() - 1 && isSeparator(searchSpace.get(i)
if (i == searchSpace.size() - 1 && j == searchSpace.get(i)
.length() - 1 || j != searchSpace.get(i).length() - 1 && isSeparator(searchSpace.get(i)
.charAt(j + 1, caseInsensitive)) || j == searchSpace.get(i)
.length() - 1 && isSeparator(searchSpace.get(i + 1)
.charAt(0, caseInsensitive)) || j == searchSpace.get(i).length() - 1 && searchSpace.get(i)
.charAt(0, caseInsensitive)) || j == searchSpace.get(i)
.length() - 1 && searchSpace.get(i)
.charAt(j, caseInsensitive) != ' ' && searchSpace.get(i + 1)
.charAt(0, caseInsensitive) != ' ') {
finalMatches.addAll(buildEntityPositionSequence(crossSequenceParts));
finalMatches.addAll(buildEntityPositionSequence(crossSequenceParts, normalizedSearchString));
}
counter = 0;
@@ -130,15 +135,21 @@ public class SearchableText {
}
return finalMatches;
}
private List<EntityPositionSequence> buildEntityPositionSequence(List<TextPositionSequence> crossSequenceParts) {
private List<EntityPositionSequence> buildEntityPositionSequence(List<TextPositionSequence> crossSequenceParts,
String searchString) {
List<EntityPositionSequence> result = new ArrayList<>();
String asString = buildString(crossSequenceParts);
if (!asString.equalsIgnoreCase(searchString)) {
return result;
}
String plainId = IdBuilder.buildId(crossSequenceParts);
String id = plainId;
List<EntityPositionSequence> result = new ArrayList<>();
int currentPage = -1;
int idDiffentPageSuffix = 1;
EntityPositionSequence entityPositionSequence = new EntityPositionSequence(id);
@@ -173,6 +184,12 @@ public class SearchableText {
@Override
public String toString() {
return buildString(sequences);
}
public String buildString(List<TextPositionSequence> sequences) {
StringBuilder sb = new StringBuilder();
TextPositionSequence previous = null;
@@ -215,4 +232,4 @@ public class SearchableText {
return sb.append("\n").toString();
}
}
}
@@ -1,23 +1,23 @@
package com.iqser.red.service.redaction.v1.server.redaction.model;
import static com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary.RECOMMENDATION_PREFIX;
import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
import com.iqser.red.service.redaction.v1.server.redaction.utils.EntitySearchUtils;
import com.iqser.red.service.redaction.v1.server.redaction.utils.Patterns;
import lombok.Builder;
import lombok.Data;
import lombok.extern.slf4j.Slf4j;
import org.apache.commons.lang3.StringUtils;
import java.util.ArrayList;
import java.util.Collection;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.regex.Matcher;
import java.util.regex.Pattern;
import java.util.stream.Collectors;
import org.apache.commons.lang3.StringUtils;
import com.iqser.red.service.redaction.v1.server.redaction.utils.Patterns;
import lombok.Builder;
import lombok.Data;
import lombok.extern.slf4j.Slf4j;
import static com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary.RECOMMENDATION_PREFIX;
@Data
@Slf4j
@@ -45,6 +45,13 @@ public class Section {
private Map<String, CellValue> tabularData;
private Dictionary dictionary;
private SearchableText searchableText;
@Builder.Default
private Set<Image> images = new HashSet<>();
public boolean rowEquals(String headerName, String value) {
@@ -56,24 +63,78 @@ public class Section {
}
public boolean hasTableHeader(String headerName) {
String cleanHeaderName = headerName.replaceAll("\n", "").replaceAll(" ", "").replaceAll("-", "");
return tabularData != null && tabularData.containsKey(cleanHeaderName);
}
public boolean matchesType(String type) {
return entities.stream().anyMatch(entity -> entity.getType().equals(type));
}
public boolean matchesImageType(String type) {
return images.stream().anyMatch(image -> image.getType().equals(type));
}
public boolean headlineContainsWord(String word) {
return StringUtils.containsIgnoreCase(headline, word);
}
public void expandByRegEx(String type, String pattern, boolean patternCaseInsensitive, int group) {
Pattern compiledPattern = Patterns.getCompiledPattern(pattern, patternCaseInsensitive);
Set<Entity> expanded = new HashSet<>();
for (Entity entity : entities) {
if (!entity.getType().equals(type) || entity.getTextAfter() == null) {
continue;
}
Matcher matcher = compiledPattern.matcher(entity.getTextAfter());
while (matcher.find()) {
String match = matcher.group(group);
if (StringUtils.isNotBlank(match)) {
expanded.addAll(findEntities(entity.getWord() + match, type, false, entity.isRedaction(), entity.getMatchedRule(), entity
.getRedactionReason(), entity.getLegalBasis()));
}
}
}
EntitySearchUtils.addEntitiesWithHigherRank(entities, expanded, dictionary);
EntitySearchUtils.removeEntitiesContainedInLarger(entities);
}
public void redactImage(String type, int ruleNumber, String reason, String legalBasis) {
images.forEach(image -> {
if (image.getType().equals(type)) {
image.setRedaction(true);
image.setMatchedRule(ruleNumber);
image.setRedactionReason(reason);
image.setLegalBasis(legalBasis);
}
});
}
public void redact(String type, int ruleNumber, String reason, String legalBasis) {
boolean hasRecommendactionDictionary = dictionaryTypes.contains(RECOMMENDATION_PREFIX + type);
boolean hasRecommendationDictionary = dictionaryTypes.contains(RECOMMENDATION_PREFIX + type);
entities.forEach(entity -> {
if (entity.getType().equals(type) || hasRecommendactionDictionary && entity.getType()
if (entity.getType().equals(type) || hasRecommendationDictionary && entity.getType()
.equals(RECOMMENDATION_PREFIX + type)) {
entity.setRedaction(true);
entity.setMatchedRule(ruleNumber);
@@ -84,12 +145,24 @@ public class Section {
}
public void redactNotImage(String type, int ruleNumber, String reason) {
images.forEach(image -> {
if (image.getType().equals(type)) {
image.setRedaction(false);
image.setMatchedRule(ruleNumber);
image.setRedactionReason(reason);
}
});
}
public void redactNot(String type, int ruleNumber, String reason) {
boolean hasRecommendactionDictionary = dictionaryTypes.contains(RECOMMENDATION_PREFIX + type);
boolean hasRecommendationDictionary = dictionaryTypes.contains(RECOMMENDATION_PREFIX + type);
entities.forEach(entity -> {
if (entity.getType().equals(type) || hasRecommendactionDictionary && entity.getType()
if (entity.getType().equals(type) || hasRecommendationDictionary && entity.getType()
.equals(RECOMMENDATION_PREFIX + type)) {
entity.setRedaction(false);
entity.setMatchedRule(ruleNumber);
@@ -99,6 +172,49 @@ public class Section {
}
public void expandToHintAnnotationByRegEx(String type, String pattern, boolean patternCaseInsensitive, int group,
String asType) {
Pattern compiledPattern = Patterns.getCompiledPattern(pattern, patternCaseInsensitive);
Set<Entity> expanded = new HashSet<>();
for (Entity entity : entities) {
if (!entity.getType().equals(type) || entity.getTextAfter() == null) {
continue;
}
Matcher matcher = compiledPattern.matcher(entity.getTextAfter());
while (matcher.find()) {
String match = matcher.group(group);
if (StringUtils.isNotBlank(match)) {
expanded.addAll(findEntities(entity.getWord() + match, asType, false, false, 0, null, null));
}
}
}
EntitySearchUtils.addEntitiesWithHigherRank(entities, expanded, dictionary);
EntitySearchUtils.removeEntitiesContainedInLarger(entities);
}
public void addHintAnnotationByRegEx(String pattern, boolean patternCaseInsensitive, int group, String asType) {
Pattern compiledPattern = Patterns.getCompiledPattern(pattern, patternCaseInsensitive);
Matcher matcher = compiledPattern.matcher(searchText);
while (matcher.find()) {
String match = matcher.group(group);
if (StringUtils.isNotBlank(match)) {
Set<Entity> found = findEntities(match.trim(), asType, false, false, 0, null, null);
EntitySearchUtils.addEntitiesWithHigherRank(entities, found, dictionary);
}
}
}
public void redactIfPrecededBy(String prefix, String type, int ruleNumber, String reason, String legalBasis) {
entities.forEach(entity -> {
@@ -114,8 +230,15 @@ public class Section {
public void addHintAnnotation(String value, String asType) {
Set<Entity> found = findEntities(value.trim(), asType, true);
entities.addAll(found);
Set<Entity> found = findEntities(value.trim(), asType, true, false, 0, null, null);
EntitySearchUtils.addEntitiesIgnoreRank(entities, found);
}
public void addRedaction(String value, String asType, int ruleNumber, String reason, String legalBasis) {
Set<Entity> found = findEntities(value.trim(), asType, true, true, ruleNumber, reason, legalBasis);
EntitySearchUtils.addEntitiesIgnoreRank(entities, found);
}
@@ -127,24 +250,88 @@ public class Section {
if (values != null) {
for (String value : values) {
if (StringUtils.isNotBlank(value)) {
Set<Entity> found = findEntities(value.trim(), asType, false);
// HashSet keeps the older value, but we want the new only.
entities.removeAll(found);
entities.addAll(found);
Set<Entity> found = findEntities(value.trim(), asType, false, true, ruleNumber, reason, legalBasis);
EntitySearchUtils.addEntitiesWithHigherRank(entities, found, dictionary);
if (redactEverywhere && !isLocal()) {
localDictionaryAdds.computeIfAbsent(asType, (x) -> new HashSet<>()).add(value.trim());
}
}
}
}
}
// TODO No need to iterate
entities.forEach(entity -> {
if (entity.getType().equals(asType)) {
entity.setRedaction(true);
entity.setMatchedRule(ruleNumber);
entity.setRedactionReason(reason);
entity.setLegalBasis(legalBasis);
public void recommendLineAfter(String start, String asType) {
String[] values = StringUtils.substringsBetween(text, start, "\n");
if (values != null) {
for (String value : values) {
String trimmedValue = value.trim();
String cleanValue;
if (trimmedValue.startsWith(":")) {
cleanValue = trimmedValue.substring(1).trim();
} else {
cleanValue = trimmedValue;
}
if (StringUtils.isNotBlank(cleanValue) && cleanValue.length() >= 3) {
localDictionaryAdds.computeIfAbsent(RECOMMENDATION_PREFIX + asType, (x) -> new HashSet<>())
.add(cleanValue);
}
}
});
}
}
public void redactByRegEx(String pattern, boolean patternCaseInsensitive, int group, String asType, int ruleNumber,
String reason, String legalBasis) {
Pattern compiledPattern = Patterns.getCompiledPattern(pattern, patternCaseInsensitive);
Matcher matcher = compiledPattern.matcher(searchText);
while (matcher.find()) {
String match = matcher.group(group);
if (StringUtils.isNotBlank(match)) {
Set<Entity> found = findEntities(match.trim(), asType, false, true, ruleNumber, reason, legalBasis);
EntitySearchUtils.addEntitiesWithHigherRank(entities, found, dictionary);
}
}
}
public void addRecommendationByRegEx(String pattern, boolean patternCaseInsensitive, int group, String asType) {
Pattern compiledPattern = Patterns.getCompiledPattern(pattern, patternCaseInsensitive);
Matcher matcher = compiledPattern.matcher(text);
while (matcher.find()) {
String match = matcher.group(group);
if (StringUtils.isNotBlank(match) && match.length() >= 3) {
localDictionaryAdds.computeIfAbsent(RECOMMENDATION_PREFIX + asType, (x) -> new HashSet<>()).add(match);
}
}
}
public void redactAndRecommendByRegEx(String pattern, boolean patternCaseInsensitive, int group, String asType,
int ruleNumber, String reason, String legalBasis) {
Pattern compiledPattern = Patterns.getCompiledPattern(pattern, patternCaseInsensitive);
Matcher matcher = compiledPattern.matcher(searchText);
while (matcher.find()) {
String match = matcher.group(group);
if (StringUtils.isNotBlank(match) && match.length() >= 3) {
localDictionaryAdds.computeIfAbsent(RECOMMENDATION_PREFIX + asType, (x) -> new HashSet<>()).add(match);
localDictionaryAdds.computeIfAbsent(asType, (x) -> new HashSet<>()).add(match);
}
}
}
@@ -156,26 +343,16 @@ public class Section {
if (values != null) {
for (String value : values) {
if (StringUtils.isNotBlank(value)) {
Set<Entity> found = findEntities(value.trim(), asType, false);
// HashSet keeps the older value, but we want the new only.
entities.removeAll(found);
entities.addAll(found);
Set<Entity> found = findEntities(value.trim(), asType, false, true, ruleNumber, reason, legalBasis);
EntitySearchUtils.addEntitiesWithHigherRank(entities, found, dictionary);
if (redactEverywhere && !isLocal()) {
localDictionaryAdds.computeIfAbsent(asType, (x) -> new HashSet<>()).add(value.trim());
}
}
}
}
// TODO No need to iterate
entities.forEach(entity -> {
if (entity.getType().equals(asType)) {
entity.setRedaction(true);
entity.setMatchedRule(ruleNumber);
entity.setRedactionReason(reason);
entity.setLegalBasis(legalBasis);
}
});
}
@@ -195,11 +372,9 @@ public class Section {
return;
}
Set<Entity> found = findEntities(line.trim(), asType, false);
Set<Entity> found = findEntities(line.trim(), asType, false, true, ruleNumber, reason, legalBasis);
EntitySearchUtils.addEntitiesWithHigherRank(entities, found, dictionary);
// HashSet keeps the older value, but we want the new only.
entities.removeAll(found);
entities.addAll(found);
if (redactEverywhere && !isLocal()) {
localDictionaryAdds.computeIfAbsent(asType, (x) -> new HashSet<>()).add(line.trim());
}
@@ -207,65 +382,6 @@ public class Section {
}
}
}
// TODO No need to iterate
entities.forEach(entity -> {
if (entity.getType().equals(asType)) {
entity.setRedaction(true);
entity.setMatchedRule(ruleNumber);
entity.setRedactionReason(reason);
entity.setLegalBasis(legalBasis);
}
});
}
private Set<Entity> findEntities(String value, String asType, boolean caseinsensitive) {
if (value.trim().length() <= 2) {
return new HashSet<>();
}
Set<Entity> found = new HashSet<>();
String text = caseinsensitive ? searchText.toLowerCase() : searchText;
String searchValue = caseinsensitive ? value.toLowerCase() : value;
int startIndex;
int stopIndex = 0;
do {
startIndex = text.indexOf(searchValue, stopIndex);
stopIndex = startIndex + searchValue.length();
if (startIndex > -1 && (startIndex == 0 || Character.isWhitespace(text.charAt(startIndex - 1)) || isSeparator(text
.charAt(startIndex - 1))) && (stopIndex == text.length() || isSeparator(text.charAt(stopIndex)))) {
found.add(new Entity(searchText.substring(startIndex, stopIndex), asType, startIndex, stopIndex, headline, sectionNumber, false));
}
} while (startIndex > -1);
return removeEntitiesContainedInLarger(found);
}
private boolean isSeparator(char c) {
return Character.isWhitespace(c) || Pattern.matches("\\p{Punct}", String.valueOf(c)) || c == '\"' || c == '‘' || c == '’';
}
public Set<Entity> removeEntitiesContainedInLarger(Set<Entity> entities) {
List<Entity> wordsToRemove = new ArrayList<>();
for (Entity word : entities) {
for (Entity inner : entities) {
if (inner.getWord().length() < word.getWord()
.length() && inner.getStart() >= word.getStart() && inner.getEnd() <= word.getEnd() && word != inner) {
wordsToRemove.add(inner);
}
}
}
entities.removeAll(wordsToRemove);
return entities;
}
@@ -289,6 +405,27 @@ public class Section {
}
private Set<Entity> findEntities(String value, String asType, boolean caseInsensitive, boolean redacted,
int ruleNumber, String reason, String legalBasis) {
String text = caseInsensitive ? searchText.toLowerCase() : searchText;
String searchValue = caseInsensitive ? value.toLowerCase() : value;
Set<Entity> found = EntitySearchUtils.find(text, Set.of(searchValue), asType, headline, sectionNumber, true, false);
found.forEach(entity -> {
if (redacted) {
entity.setRedaction(true);
entity.setMatchedRule(ruleNumber);
entity.setRedactionReason(reason);
entity.setLegalBasis(legalBasis);
}
});
return EntitySearchUtils.clearAndFindPositions(found, searchableText, dictionary);
}
private void annotateCell(String cellHeader, int ruleNumber, String type, boolean redact,
boolean addAsRecommendations, String reason, String legalBasis) {
@@ -300,20 +437,24 @@ public class Section {
} else {
String word = value.toString();
Entity entity = new Entity(word, type, value.getRowSpanStart(), value.getRowSpanStart() + word.length(), headline, sectionNumber, false);
Entity entity = new Entity(word, type, value.getRowSpanStart(), value.getRowSpanStart() + word.length(), headline, sectionNumber, false, false);
entity.setRedaction(redact);
entity.setMatchedRule(ruleNumber);
entity.setRedactionReason(reason);
entity.setTargetSequences(value.getTextBlocks()
.get(0)
.getSequences()); // Make sure no other cells with same content are highlighted
.stream()
.map(TextBlock::getSequences)
.flatMap(Collection::stream)
.collect(Collectors.toList())); // Make sure no other cells with same content are highlighted
entity.setLegalBasis(legalBasis);
// HashSet keeps the older value, but we want the new only.
entities.remove(entity);
entities.add(entity);
Set<Entity> singleEntitySet = new HashSet<>();
singleEntitySet.add(entity);
EntitySearchUtils.clearAndFindPositions(singleEntitySet, searchableText, dictionary);
entities = removeEntitiesContainedInLarger(entities);
EntitySearchUtils.addEntitiesWithHigherRank(entities, entity, dictionary);
EntitySearchUtils.removeEntitiesContainedInLarger(entities);
if (addAsRecommendations && !isLocal()) {
String cleanedWord = word.replaceAll(",", " ").replaceAll(" ", " ").trim() + " ";
@@ -0,0 +1,48 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import com.iqser.red.service.redaction.v1.model.AnalyzeResult;
import com.iqser.red.service.redaction.v1.model.RedactionChangeLog;
import com.iqser.red.service.redaction.v1.model.RedactionLog;
import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
import org.springframework.stereotype.Service;
@Service
public class AnalyzeResponseService {
public AnalyzeResult createAnalyzeResponse(String projectId, String fileId, long duration, int pageCount, RedactionLog redactionLog, RedactionChangeLog redactionChangeLog) {
boolean hasHints = redactionLog.getRedactionLogEntry().stream().anyMatch(RedactionLogEntry::isHint);
boolean hasRequests = redactionLog.getRedactionLogEntry()
.stream()
.anyMatch(entry -> entry.isManual() && entry.getStatus()
.equals(com.iqser.red.service.redaction.v1.model.Status.REQUESTED));
boolean hasRedactions = redactionLog.getRedactionLogEntry()
.stream()
.anyMatch(entry -> entry.isRedacted() && !entry.isManual() || entry.isManual() && entry.getStatus()
.equals(com.iqser.red.service.redaction.v1.model.Status.APPROVED));
boolean hasImages = redactionLog.getRedactionLogEntry()
.stream()
.anyMatch(entry -> entry.isHint() && entry.getType().equals("image"));
boolean hasUpdates = redactionChangeLog != null && redactionChangeLog.getRedactionLogEntry() != null && !redactionChangeLog
.getRedactionLogEntry()
.isEmpty() && redactionChangeLog.getRedactionLogEntry().stream().anyMatch(entry -> !entry.getType().equals("false_positive"));
return AnalyzeResult.builder()
.projectId(projectId)
.fileId(fileId)
.duration(duration)
.numberOfPages(pageCount)
.hasHints(hasHints)
.hasRedactions(hasRedactions)
.hasRequests(hasRequests)
.hasImages(hasImages)
.hasUpdates(hasUpdates)
.rulesVersion(redactionLog.getRulesVersion())
.dictionaryVersion(redactionLog.getDictionaryVersion())
.dossierDictionaryVersion(redactionLog.getDossierDictionaryVersion())
.build();
}
}
@@ -0,0 +1,260 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import com.iqser.red.service.redaction.v1.model.*;
import lombok.RequiredArgsConstructor;
import org.apache.pdfbox.pdmodel.PDDocument;
import org.apache.pdfbox.pdmodel.PDPage;
import org.apache.pdfbox.pdmodel.PDPageContentStream;
import org.apache.pdfbox.pdmodel.common.PDRectangle;
import org.apache.pdfbox.pdmodel.font.PDType1Font;
import org.apache.pdfbox.pdmodel.graphics.color.PDColor;
import org.apache.pdfbox.pdmodel.graphics.color.PDDeviceRGB;
import org.apache.pdfbox.pdmodel.interactive.annotation.PDAnnotation;
import org.apache.pdfbox.pdmodel.interactive.annotation.PDAnnotationText;
import org.apache.pdfbox.pdmodel.interactive.annotation.PDAnnotationTextMarkup;
import org.springframework.stereotype.Service;
import java.awt.Color;
import java.io.IOException;
import java.util.ArrayList;
import java.util.GregorianCalendar;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.stream.Collectors;
@Service
@RequiredArgsConstructor
public class AnnotationService {
private final DictionaryService dictionaryService;
public void annotate(PDDocument document, RedactionLog redactionLog, SectionGrid sectionGrid) throws IOException {
Map<Integer, List<RedactionLogEntry>> redactionLogPerPage = convertRedactionLog(redactionLog);
for (int page = 1; page <= document.getNumberOfPages(); page++) {
PDPage pdPage = document.getPage(page - 1);
List<SectionRectangle> sectionRectangles = sectionGrid.getRectanglesPerPage().get(page);
if (sectionRectangles != null && !sectionRectangles.isEmpty()) {
drawSectionGrid(document, pdPage, sectionRectangles);
}
List<RedactionLogEntry> logEntries = redactionLogPerPage.get(page);
if (logEntries != null && !logEntries.isEmpty()) {
addAnnotations(logEntries, pdPage, page);
}
}
}
private void addAnnotations(List<RedactionLogEntry> logEntries, PDPage pdPage, int page) throws IOException {
List<PDAnnotation> annotations = pdPage.getAnnotations();
for (RedactionLogEntry entry : logEntries) {
annotations.addAll(createAnnotation(entry, page, pdPage.getMediaBox(), pdPage.getCropBox()));
}
}
private List<PDAnnotation> createAnnotation(RedactionLogEntry redactionLogEntry, int page, PDRectangle mediaBox,
PDRectangle cropBox) {
List<PDAnnotation> annotations = new ArrayList<>();
List<Rectangle> rectangles = redactionLogEntry.getPositions()
.stream()
.filter(pos -> pos.getPage() == page)
.collect(Collectors.toList());
if (rectangles.isEmpty()) {
return annotations;
}
PDAnnotationTextMarkup annotation = new PDAnnotationTextMarkup(PDAnnotationTextMarkup.SUB_TYPE_HIGHLIGHT);
annotation.constructAppearances();
PDRectangle pdRectangle = toPDRectangle(rectangles, mediaBox, cropBox);
annotation.setRectangle(pdRectangle);
annotation.setQuadPoints(toQuadPoints(rectangles, mediaBox, cropBox));
if (!redactionLogEntry.isHint()) {
annotation.setContents(createAnnotationContent(redactionLogEntry));
}
annotation.setTitlePopup(redactionLogEntry.getId());
annotation.setAnnotationName(redactionLogEntry.getId());
annotation.setColor(new PDColor(redactionLogEntry.getColor(), PDDeviceRGB.INSTANCE));
annotations.add(annotation);
if (redactionLogEntry.getComments() != null) {
for (Comment comment : redactionLogEntry.getComments()) {
PDAnnotationText txtAnnot = new PDAnnotationText();
txtAnnot.setAnnotationName(comment.getId());
txtAnnot.setInReplyTo(annotation); // Reference to highlight annotation
txtAnnot.setName(PDAnnotationText.NAME_COMMENT);
txtAnnot.setCreationDate(GregorianCalendar.from(comment.getDate().toZonedDateTime()));
txtAnnot.setTitlePopup(comment.getUser());
txtAnnot.setContents(comment.getText());
txtAnnot.setRectangle(pdRectangle);
annotations.add(txtAnnot);
}
}
return annotations;
}
private String createAnnotationContent(RedactionLogEntry redactionLogEntry) {
if (redactionLogEntry.isManual()) {
return "\nManual Redaction\n\nIn Section : \"" + redactionLogEntry.getSection() + "\"";
}
return "\nRule " + redactionLogEntry.getMatchedRule() + " matched\n\n" + redactionLogEntry.getReason() + "\n\nLegal basis:" + redactionLogEntry
.getLegalBasis() + "\n\nIn section: \"" + redactionLogEntry.getSection() + "\"";
}
private PDRectangle toPDRectangle(List<Rectangle> rectangles, PDRectangle mediaBox, PDRectangle cropBox) {
float lowerLeftX = Float.MAX_VALUE;
float upperRightX = 0;
float lowerLeftY = 0;
float upperRightY = Float.MAX_VALUE;
for (Rectangle rectangle : rectangles) {
if (rectangle.getTopLeft().getX() < lowerLeftX) {
lowerLeftX = rectangle.getTopLeft().getX();
}
if (rectangle.getTopLeft().getX() + rectangle.getWidth() > upperRightX) {
upperRightX = rectangle.getTopLeft().getX() + rectangle.getWidth();
}
if (rectangle.getTopLeft().getY() + rectangle.getHeight() > lowerLeftY) {
lowerLeftY = rectangle.getTopLeft().getY() + rectangle.getHeight();
}
if (rectangle.getTopLeft().getY() < upperRightY) {
upperRightY = rectangle.getTopLeft().getY();
}
}
var x1 = lowerLeftX + cropBox.getLowerLeftX() - mediaBox.getLowerLeftY();
var y1 = lowerLeftY + (mediaBox.getLowerLeftY() - cropBox.getLowerLeftY());
var x2 = upperRightX + cropBox.getLowerLeftX() - mediaBox.getLowerLeftY();
var y2 = upperRightY - (mediaBox.getLowerLeftY() - cropBox.getLowerLeftY());
PDRectangle annotationPosition = new PDRectangle();
annotationPosition.setLowerLeftX(x1);
annotationPosition.setLowerLeftY(y1);
annotationPosition.setUpperRightX(x2);
annotationPosition.setUpperRightY(y2);
return annotationPosition;
}
private float[] toQuadPoints(List<Rectangle> rectangles, PDRectangle mediaBox, PDRectangle cropBox) {
float[] quadPoints = new float[rectangles.size() * 8];
int i = 0;
for (Rectangle rectangle : rectangles) {
float[] quadPoint = toQuadPoint(rectangle, mediaBox, cropBox);
for (int j = 0; j <= 7; j++) {
quadPoints[i + j] = quadPoint[j];
}
i += 8;
}
return quadPoints;
}
private float[] toQuadPoint(Rectangle rectangle, PDRectangle mediaBox, PDRectangle cropBox) {
var x1 = rectangle.getTopLeft().getX() + cropBox.getLowerLeftX() - mediaBox.getLowerLeftY();
var y1 = rectangle.getTopLeft().getY() + (mediaBox.getLowerLeftY() - cropBox.getLowerLeftY());
var x2 = rectangle.getTopLeft()
.getX() + rectangle.getWidth() + cropBox.getLowerLeftX() - mediaBox.getLowerLeftY();
var y2 = rectangle.getTopLeft()
.getY() + rectangle.getHeight() - (mediaBox.getLowerLeftY() - cropBox.getLowerLeftY());
// quadPoints is array of x,y coordinates in Z-like order (top-left, top-right, bottom-left,bottom-right)
// of the area to be highlighted
return new float[]{x1, y1, x2, y2, x1, y2 - rectangle.getHeight(), x2, y1 - rectangle.getHeight()};
}
private void drawSectionGrid(PDDocument document, PDPage pdPage,
List<SectionRectangle> sectionRectangles) throws IOException {
PDPageContentStream contentStream = new PDPageContentStream(document, pdPage, PDPageContentStream.AppendMode.APPEND, true);
for (SectionRectangle sectionRectangle : sectionRectangles) {
drawSectionRectangle(contentStream, sectionRectangle);
drawSectionPartNumberText(contentStream, sectionRectangle);
drawTableCells(contentStream, sectionRectangle);
}
contentStream.close();
}
private void drawSectionRectangle(PDPageContentStream contentStream,
SectionRectangle sectionRectangle) throws IOException {
contentStream.setStrokingColor(Color.LIGHT_GRAY);
contentStream.setLineWidth(0.5f);
contentStream.addRect(sectionRectangle.getTopLeft().getX(), sectionRectangle.getTopLeft()
.getY(), sectionRectangle.getWidth(), sectionRectangle.getHeight());
contentStream.stroke();
}
private void drawSectionPartNumberText(PDPageContentStream contentStream,
SectionRectangle sectionRectangle) throws IOException {
contentStream.beginText();
contentStream.setNonStrokingColor(Color.DARK_GRAY);
contentStream.setFont(PDType1Font.TIMES_ROMAN, 8f);
if (sectionRectangle.getTableCells() == null) {
contentStream.newLineAtOffset(sectionRectangle.getTopLeft().getX(), sectionRectangle.getTopLeft()
.getY() + sectionRectangle.getHeight());
} else {
contentStream.newLineAtOffset(sectionRectangle.getTopLeft().getX(), sectionRectangle.getTopLeft().getY());
}
contentStream.showText(sectionRectangle.getPart() + "/" + sectionRectangle.getNumberOfParts());
contentStream.endText();
}
private void drawTableCells(PDPageContentStream contentStream,
SectionRectangle sectionRectangle) throws IOException {
if (sectionRectangle.getTableCells() != null) {
for (CellRectangle cell : sectionRectangle.getTableCells()) {
contentStream.setLineWidth(0.5f);
contentStream.setStrokingColor(Color.CYAN);
contentStream.addRect(cell.getTopLeft().getX(), cell.getTopLeft()
.getY(), cell.getWidth(), cell.getHeight());
contentStream.stroke();
}
}
}
private Map<Integer, List<RedactionLogEntry>> convertRedactionLog(RedactionLog redactionLog) {
Map<Integer, List<RedactionLogEntry>> redactionLogPerPage = new HashMap<>();
if (redactionLog == null) {
return redactionLogPerPage;
}
for (RedactionLogEntry entry : redactionLog.getRedactionLogEntry()) {
int page = 0;
for (Rectangle position : entry.getPositions()) {
if (position.getPage() != page) {
redactionLogPerPage.computeIfAbsent(position.getPage(), x -> new ArrayList<>()).add(entry);
page = position.getPage();
}
}
}
return redactionLogPerPage;
}
}
@@ -1,93 +1,120 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import java.awt.Color;
import java.util.ArrayList;
import java.util.Comparator;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.stream.Collectors;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.lang3.SerializationUtils;
import org.springframework.stereotype.Service;
import static com.iqser.red.service.configuration.v1.api.resource.DictionaryResource.GLOBAL_DOSSIER;
import com.iqser.red.service.configuration.v1.api.model.Colors;
import com.iqser.red.service.configuration.v1.api.model.DictionaryEntry;
import com.iqser.red.service.configuration.v1.api.model.TypeResponse;
import com.iqser.red.service.configuration.v1.api.model.TypeResult;
import com.iqser.red.service.redaction.v1.server.client.DictionaryClient;
import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryIncrement;
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryIncrementValue;
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryModel;
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryRepresentation;
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryVersion;
import feign.FeignException;
import lombok.Getter;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.lang3.SerializationUtils;
import org.springframework.stereotype.Service;
import java.awt.Color;
import java.util.*;
import java.util.stream.Collectors;
@Slf4j
@Service
@RequiredArgsConstructor
public class DictionaryService {
private final DictionaryClient dictionaryClient;
@Getter
private long dictionaryVersion = -1;
@Getter
private List<DictionaryModel> dictionary = new ArrayList<>();
@Getter
private float[] defaultColor;
@Getter
private float[] requestAddColor;
@Getter
private float[] requestRemoveColor;
@Getter
private float[] notRedactedColor;
private final Map<String, DictionaryRepresentation> dictionariesByRuleSets = new HashMap<>();
private final Map<String, DictionaryRepresentation> dictionariesByDossier = new HashMap<>();
private Map<String, DictionaryModel> localAccessMap = new HashMap<>();
public DictionaryVersion updateDictionary(String ruleSetId, String dossierId) {
public void updateDictionary() {
long version = dictionaryClient.getVersion();
if (version > dictionaryVersion) {
dictionaryVersion = version;
updateDictionaryEntry();
long rulesetDictionaryVersion = dictionaryClient.getVersion(ruleSetId, GLOBAL_DOSSIER);
var rulesetDictionary = dictionariesByRuleSets.get(ruleSetId);
if (rulesetDictionary == null || rulesetDictionaryVersion > rulesetDictionary.getDictionaryVersion()) {
updateDictionaryEntry(ruleSetId, rulesetDictionaryVersion, GLOBAL_DOSSIER);
}
long dossierDictionaryVersion = dictionaryClient.getVersion(ruleSetId, dossierId);
var dossierDictionary = dictionariesByDossier.get(dossierId);
if (dossierDictionary == null || dossierDictionaryVersion > dossierDictionary.getDictionaryVersion()) {
updateDictionaryEntry(ruleSetId, dossierDictionaryVersion, dossierId);
}
return DictionaryVersion.builder().rulesetVersion(rulesetDictionaryVersion).dossierVersion(dossierDictionaryVersion).build();
}
private void updateDictionaryEntry() {
public DictionaryIncrement getDictionaryIncrements(String ruleSetId, DictionaryVersion fromVersion, String dossierId) {
DictionaryVersion version = updateDictionary(ruleSetId, dossierId);
Set<DictionaryIncrementValue> newValues = new HashSet<>();
List<DictionaryModel> dictionaryModels = dictionariesByRuleSets.get(ruleSetId).getDictionary();
dictionaryModels.forEach(dictionaryModel -> {
dictionaryModel.getEntries().forEach(dictionaryEntry -> {
if (dictionaryEntry.getVersion() > fromVersion.getRulesetVersion()) {
newValues.add(new DictionaryIncrementValue(dictionaryEntry.getValue(), dictionaryModel.isCaseInsensitive()));
}
});
});
if(dictionariesByDossier.containsKey(dossierId)) {
dictionaryModels = dictionariesByDossier.get(dossierId).getDictionary();
dictionaryModels.forEach(dictionaryModel -> {
dictionaryModel.getEntries().forEach(dictionaryEntry -> {
if (dictionaryEntry.getVersion() > fromVersion.getDossierVersion()) {
newValues.add(new DictionaryIncrementValue(dictionaryEntry.getValue(), dictionaryModel.isCaseInsensitive()));
}
});
});
}
return new DictionaryIncrement(newValues, version);
}
private void updateDictionaryEntry(String ruleSetId, long version, String dossierId) {
try {
TypeResponse typeResponse = dictionaryClient.getAllTypes();
DictionaryRepresentation dictionaryRepresentation = new DictionaryRepresentation();
TypeResponse typeResponse = dictionaryClient.getAllTypes(ruleSetId, dossierId);
if (typeResponse != null && CollectionUtils.isNotEmpty(typeResponse.getTypes())) {
dictionary = typeResponse.getTypes()
List<DictionaryModel> dictionary = typeResponse.getTypes()
.stream()
.map(t -> new DictionaryModel(t.getType(), t.getRank(), convertColor(t.getHexColor()), t.isCaseInsensitive(), t
.isHint(), t.isRecommendation(), convertEntries(t), new HashSet<>()))
.isHint(), t.isRecommendation(), convertEntries(t, dossierId), new HashSet<>(),dossierId.equals(GLOBAL_DOSSIER) ? false : true))
.sorted(Comparator.comparingInt(DictionaryModel::getRank).reversed())
.collect(Collectors.toList());
localAccessMap.clear();
dictionary.forEach(dm -> localAccessMap.put(dm.getType(), dm));
dictionary.forEach(dm -> dictionaryRepresentation.getLocalAccessMap().put(dm.getType(), dm));
Colors colors = dictionaryClient.getColors();
defaultColor = convertColor(colors.getDefaultColor());
requestAddColor = convertColor(colors.getRequestAdd());
requestRemoveColor = convertColor(colors.getRequestRemove());
notRedactedColor = convertColor(colors.getNotRedacted());
Colors colors = dictionaryClient.getColors(ruleSetId);
dictionaryRepresentation.setDefaultColor(convertColor(colors.getDefaultColor()));
dictionaryRepresentation.setRequestAddColor(convertColor(colors.getRequestAdd()));
dictionaryRepresentation.setRequestRemoveColor(convertColor(colors.getRequestRemove()));
dictionaryRepresentation.setNotRedactedColor(convertColor(colors.getNotRedacted()));
dictionaryRepresentation.setRuleSetId(ruleSetId);
dictionaryRepresentation.setDictionaryVersion(version);
dictionaryRepresentation.setDictionary(dictionary);
if(dossierId.equals(GLOBAL_DOSSIER)) {
dictionariesByRuleSets.put(ruleSetId, dictionaryRepresentation);
} else {
dictionariesByDossier.put(dossierId, dictionaryRepresentation);
}
}
} catch (FeignException e) {
log.warn("Got some unknown feignException", e);
@@ -96,30 +123,29 @@ public class DictionaryService {
}
public void updateExternalDictionary(Dictionary dictionary){
public void updateExternalDictionary(Dictionary dictionary, String ruleSetId) {
dictionary.getDictionaryModels().forEach(dm -> {
if(dm.isRecommendation() && !dm.getLocalEntries().isEmpty()){
dictionaryClient.addEntries(dm.getType(), new ArrayList<>(dm.getLocalEntries()), false);
long externalVersion = dictionaryClient.getVersion();
if(externalVersion == dictionary.getVersion() + 1){
dictionary.setVersion(externalVersion);
if (dm.isRecommendation() && !dm.getLocalEntries().isEmpty()) {
dictionaryClient.addEntries(dm.getType(), ruleSetId, new ArrayList<>(dm.getLocalEntries()), false, GLOBAL_DOSSIER);
long externalVersion = dictionaryClient.getVersion(ruleSetId, GLOBAL_DOSSIER);
if (externalVersion == dictionary.getVersion().getRulesetVersion() + 1) {
dictionary.getVersion().setRulesetVersion(externalVersion);
}
}
});
}
private Set<String> convertEntries(TypeResult t) {
private Set<DictionaryEntry> convertEntries(TypeResult t, String dossierId) {
Set<DictionaryEntry> entries = new HashSet<>(dictionaryClient.getDictionaryForType(t.getType(), t.getRuleSetId(), dossierId)
.getEntries());
if (t.isCaseInsensitive()) {
return dictionaryClient.getDictionaryForType(t.getType())
.getEntries()
.stream()
.map(String::toLowerCase)
.collect(Collectors.toSet());
} else {
return new HashSet<>(dictionaryClient.getDictionaryForType(t.getType()).getEntries());
entries.forEach(entry -> entry.setValue(entry.getValue().toLowerCase(Locale.ROOT)));
}
return entries;
}
@@ -130,9 +156,9 @@ public class DictionaryService {
}
public boolean isCaseInsensitiveDictionary(String type) {
public boolean isCaseInsensitiveDictionary(String type, String ruleSetId) {
DictionaryModel dictionaryModel = localAccessMap.get(type);
DictionaryModel dictionaryModel = dictionariesByRuleSets.get(ruleSetId).getLocalAccessMap().get(type);
if (dictionaryModel != null) {
return dictionaryModel.isCaseInsensitive();
}
@@ -140,28 +166,29 @@ public class DictionaryService {
}
public float[] getColor(String type) {
public float[] getColor(String type, String ruleSetId) {
DictionaryModel model = localAccessMap.get(type);
DictionaryModel model = dictionariesByRuleSets.get(ruleSetId).getLocalAccessMap().get(type);
if (model != null) {
return model.getColor();
}
return defaultColor;
return dictionariesByRuleSets.get(ruleSetId).getDefaultColor();
}
public boolean isHint(String type) {
public boolean isHint(String type, String ruleSetId) {
DictionaryModel model = localAccessMap.get(type);
DictionaryModel model = dictionariesByRuleSets.get(ruleSetId).getLocalAccessMap().get(type);
if (model != null) {
return model.isHint();
}
return false;
}
public boolean isRecommendation(String type) {
DictionaryModel model = localAccessMap.get(type);
public boolean isRecommendation(String type, String ruleSetId) {
DictionaryModel model = dictionariesByRuleSets.get(ruleSetId).getLocalAccessMap().get(type);
if (model != null) {
return model.isRecommendation();
}
@@ -169,14 +196,44 @@ public class DictionaryService {
}
public Dictionary getDeepCopyDictionary(){
public Dictionary getDeepCopyDictionary(String ruleSetId, String dossierId) {
List<DictionaryModel> copy = new ArrayList<>();
dictionary.forEach(dm -> {
var rulesetRepresentation = dictionariesByRuleSets.get(ruleSetId);
rulesetRepresentation.getDictionary().forEach(dm -> {
copy.add(SerializationUtils.clone(dm));
});
return new Dictionary(copy, dictionaryVersion);
//TODO merge dictionaries if they have same names
long dossierDictionaryVersion = -1;
if(dictionariesByDossier.containsKey(dossierId)) {
var dossierRepresentation = dictionariesByDossier.get(dossierId);
dossierRepresentation.getDictionary().forEach(dm -> {
copy.add(SerializationUtils.clone(dm));
});
dossierDictionaryVersion = dossierRepresentation.getDictionaryVersion();
}
return new Dictionary(copy, DictionaryVersion.builder().rulesetVersion(rulesetRepresentation.getDictionaryVersion()).dossierVersion(dossierDictionaryVersion).build());
}
}
public float[] getRequestRemoveColor(String ruleSetId) {
return dictionariesByRuleSets.get(ruleSetId).getRequestAddColor();
}
public float[] getNotRedactedColor(String ruleSetId) {
return dictionariesByRuleSets.get(ruleSetId).getNotRedactedColor();
}
public float[] getRequestAddColor(String ruleSetId) {
return dictionariesByRuleSets.get(ruleSetId).getRequestAddColor();
}
}
@@ -1,9 +1,10 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import java.io.ByteArrayInputStream;
import java.io.InputStream;
import java.nio.charset.StandardCharsets;
import com.iqser.red.service.configuration.v1.api.model.RulesResponse;
import com.iqser.red.service.redaction.v1.server.client.RulesClient;
import com.iqser.red.service.redaction.v1.server.exception.RulesValidationException;
import com.iqser.red.service.redaction.v1.server.redaction.model.Section;
import lombok.RequiredArgsConstructor;
import org.apache.commons.lang3.StringUtils;
import org.kie.api.KieServices;
import org.kie.api.builder.KieBuilder;
@@ -11,15 +12,13 @@ import org.kie.api.builder.KieFileSystem;
import org.kie.api.builder.KieModule;
import org.kie.api.runtime.KieContainer;
import org.kie.api.runtime.KieSession;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.stereotype.Service;
import com.iqser.red.service.redaction.v1.server.client.RulesClient;
import com.iqser.red.service.redaction.v1.server.exception.RulesValidationException;
import com.iqser.red.service.redaction.v1.server.redaction.model.Section;
import lombok.Getter;
import lombok.RequiredArgsConstructor;
import java.io.ByteArrayInputStream;
import java.io.InputStream;
import java.nio.charset.StandardCharsets;
import java.util.HashMap;
import java.util.Map;
@Service
@RequiredArgsConstructor
@@ -27,13 +26,23 @@ public class DroolsExecutionService {
private final RulesClient rulesClient;
@Autowired
private KieContainer kieContainer;
private final Map<String, KieContainer> kieContainers = new HashMap<>();
@Getter
private long rulesVersion = -1;
private final Map<String, Long> rulesVersionPerRuleSetId = new HashMap<>();
public Section executeRules(Section section) {
public KieContainer getKieContainer(String ruleSetId) {
KieContainer container = kieContainers.get(ruleSetId);
if (container == null) {
return createOrUpdateKieContainer(ruleSetId);
} else {
return container;
}
}
public Section executeRules(KieContainer kieContainer, Section section) {
KieSession kieSession = kieContainer.newKieSession();
kieSession.setGlobal("section", section);
@@ -45,34 +54,81 @@ public class DroolsExecutionService {
}
public void updateRules() {
long version = rulesClient.getVersion();
if (version > rulesVersion) {
rulesVersion = version;
updateRules(rulesClient.getRules().getRules());
public KieContainer updateRules(String ruleSetId) {
long version = rulesClient.getVersion(ruleSetId);
Long rulesVersion = rulesVersionPerRuleSetId.get(ruleSetId);
if (rulesVersion == null) {
rulesVersion = -1L;
}
if (version > rulesVersion.longValue()) {
rulesVersionPerRuleSetId.put(ruleSetId, version);
return createOrUpdateKieContainer(ruleSetId);
}
return getKieContainer(ruleSetId);
}
public void updateRules(String drlAsString) {
private KieContainer createOrUpdateKieContainer(String ruleSetId) {
try {
if (StringUtils.isEmpty(drlAsString)) {
RulesResponse rules = rulesClient.getRules(ruleSetId);
if (rules == null || StringUtils.isEmpty(rules.getRules())) {
throw new RuntimeException("Rules cannot be empty.");
}
KieServices kieServices = KieServices.Factory.get();
InputStream input = new ByteArrayInputStream(drlAsString.getBytes(StandardCharsets.UTF_8));
KieFileSystem kieFileSystem = kieServices.newKieFileSystem();
kieFileSystem.write("src/main/resources/drools/rules.drl", kieServices.getResources().newInputStreamResource(input));
KieBuilder kieBuilder = kieServices.newKieBuilder(kieFileSystem);
kieBuilder.buildAll();
KieModule kieModule = kieBuilder.getKieModule();
kieContainer.updateToVersion(kieModule.getReleaseId());
KieModule kieModule = getKieModule(ruleSetId, rules.getRules(), kieServices);
var container = kieContainers.get(ruleSetId);
if (container != null) {
container.updateToVersion(kieModule.getReleaseId());
return container;
}
container = kieServices.newKieContainer(kieModule.getReleaseId());
kieContainers.put(ruleSetId, container);
return container;
} catch (Exception e) {
throw new RulesValidationException("Could not update rules: " + e.getMessage(), e);
}
}
}
private KieModule getKieModule(String ruleSetId, String rules, KieServices kieServices) {
KieFileSystem kieFileSystem = kieServices.newKieFileSystem();
InputStream input = new ByteArrayInputStream(rules.getBytes(StandardCharsets.UTF_8));
kieFileSystem.write("src/main/resources/drools/rules" + ruleSetId + ".drl", kieServices.getResources()
.newInputStreamResource(input));
KieBuilder kieBuilder = kieServices.newKieBuilder(kieFileSystem);
kieBuilder.buildAll();
return kieBuilder.getKieModule();
}
public void testRules(String rules) {
KieServices kieServices = KieServices.Factory.get();
KieModule kieModule = getKieModule("test-rules", rules, kieServices);
var container = kieServices.newKieContainer(kieModule.getReleaseId());
container.newKieSession();
container.dispose();
}
public long getRulesVersion(String ruleSetId) {
Long rulesVersion = rulesVersionPerRuleSetId.get(ruleSetId);
if (rulesVersion == null) {
return -1;
}
return rulesVersion.longValue();
}
}
@@ -1,38 +1,27 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.regex.Pattern;
import java.util.stream.Collectors;
import java.util.stream.Stream;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.lang3.StringUtils;
import org.springframework.stereotype.Service;
import com.iqser.red.service.redaction.v1.model.ManualRedactionEntry;
import com.iqser.red.service.redaction.v1.model.ManualRedactions;
import com.iqser.red.service.redaction.v1.model.Point;
import com.iqser.red.service.redaction.v1.model.Rectangle;
import com.iqser.red.service.redaction.v1.server.classification.model.Document;
import com.iqser.red.service.redaction.v1.server.classification.model.Paragraph;
import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
import com.iqser.red.service.redaction.v1.server.redaction.model.CellValue;
import com.iqser.red.service.redaction.v1.model.SectionArea;
import com.iqser.red.service.redaction.v1.server.classification.model.*;
import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryModel;
import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
import com.iqser.red.service.redaction.v1.server.redaction.model.EntityPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
import com.iqser.red.service.redaction.v1.server.redaction.model.Section;
import com.iqser.red.service.redaction.v1.server.redaction.model.SectionSearchableTextPair;
import com.iqser.red.service.redaction.v1.server.redaction.model.*;
import com.iqser.red.service.redaction.v1.server.redaction.utils.EntitySearchUtils;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Cell;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.lang3.StringUtils;
import org.kie.api.runtime.KieContainer;
import org.springframework.stereotype.Service;
import java.util.*;
import java.util.concurrent.atomic.AtomicInteger;
import java.util.stream.Collectors;
import java.util.stream.Stream;
@Slf4j
@Service
@@ -44,32 +33,29 @@ public class EntityRedactionService {
private final SurroundingWordsService surroundingWordsService;
public void processDocument(Document classifiedDoc, ManualRedactions manualRedactions) {
public void processDocument(Document classifiedDoc, String ruleSetId, ManualRedactions manualRedactions, String dossierId) {
dictionaryService.updateDictionary();
droolsExecutionService.updateRules();
long rulesVersion = droolsExecutionService.getRulesVersion();
dictionaryService.updateDictionary(ruleSetId, dossierId);
KieContainer container = droolsExecutionService.updateRules(ruleSetId);
long rulesVersion = droolsExecutionService.getRulesVersion(ruleSetId);
Dictionary dictionary = dictionaryService.getDeepCopyDictionary();
Dictionary dictionary = dictionaryService.getDeepCopyDictionary(ruleSetId, dossierId);
Set<Entity> documentEntities = new HashSet<>(findEntities(classifiedDoc, manualRedactions, dictionary, false, null));
Set<Entity> documentEntities = new HashSet<>(findEntities(classifiedDoc, container, manualRedactions, dictionary, false, null));
if (dictionary.hasLocalEntries()) {
Map<Integer, Set<Entity>> hintsPerSectionNumber = new HashMap<>();
documentEntities.stream().forEach(entity -> {
if (dictionary.isHint(entity.getType())) {
if (dictionary.isHint(entity.getType()) && entity.isDictionaryEntry()) {
hintsPerSectionNumber.computeIfAbsent(entity.getSectionNumber(), (x) -> new HashSet<>())
.add(entity);
}
});
Set<Entity> foundByLocal = findEntities(classifiedDoc, manualRedactions, dictionary, true, hintsPerSectionNumber);
// HashSet keeps the older value, but we want the new only.
documentEntities.removeAll(foundByLocal);
documentEntities.addAll(foundByLocal);
removeEntitiesContainedInLarger(documentEntities);
Set<Entity> foundByLocal = findEntities(classifiedDoc, container, manualRedactions, dictionary, true, hintsPerSectionNumber);
EntitySearchUtils.addEntitiesWithHigherRank(documentEntities, foundByLocal, dictionary);
EntitySearchUtils.removeEntitiesContainedInLarger(documentEntities);
}
for (Entity entity : documentEntities) {
@@ -84,103 +70,66 @@ public class EntityRedactionService {
.computeIfAbsent(entry.getKey(), (x) -> new ArrayList<>())
.add(new Entity(entity.getWord(), entity.getType(), entity.isRedaction(), entity.getRedactionReason(), entry
.getValue(), entity.getHeadline(), entity.getMatchedRule(), entity.getSectionNumber(), entity
.getLegalBasis(), entity.isDictionaryEntry(), entity.getTextBefore(), entity.getTextAfter()));
.getLegalBasis(), entity.isDictionaryEntry(), entity.getTextBefore(), entity.getTextAfter(), entity
.getStart(), entity.getEnd(), entity.isDossierDictionaryEntry()));
}
}
dictionaryService.updateExternalDictionary(dictionary);
dictionaryService.updateExternalDictionary(dictionary, ruleSetId);
classifiedDoc.setDictionaryVersion(dictionary.getVersion());
classifiedDoc.setRulesVersion(rulesVersion);
}
private Set<Entity> findEntities(Document classifiedDoc, ManualRedactions manualRedactions, Dictionary dictionary,
boolean local, Map<Integer, Set<Entity>> hintsPerSectionNumber) {
private Set<Entity> findEntities(Document classifiedDoc, KieContainer kieContainer,
ManualRedactions manualRedactions, Dictionary dictionary, boolean local,
Map<Integer, Set<Entity>> hintsPerSectionNumber) {
Set<Entity> documentEntities = new HashSet<>();
int sectionNumber = 1;
AtomicInteger sectionNumber = new AtomicInteger(1);
List<SectionSearchableTextPair> sectionSearchableTextPairs = new ArrayList<>();
for (Paragraph paragraph : classifiedDoc.getParagraphs()) {
SearchableText searchableText = paragraph.getSearchableText();
List<Table> tables = paragraph.getTables();
for (Table table : tables) {
boolean singleCellTable = table.getRowCount() == 1 && table.getColCount() == 1;
for (List<Cell> row : table.getRows()) {
SearchableText searchableRow = new SearchableText();
Map<String, CellValue> tabularData = new HashMap<>();
int start = 0;
List<Integer> cellStarts = new ArrayList<>();
for (Cell cell : row) {
if (!singleCellTable && cell.isHeaderCell() || CollectionUtils.isEmpty(cell.getTextBlocks())) {
continue;
}
addSectionToManualRedactions(cell.getTextBlocks(), manualRedactions, table.getHeadline(), sectionNumber);
int cellStart = start;
cell.getHeaderCells().forEach(headerCell -> {
StringBuilder headerBuilder = new StringBuilder();
headerCell.getTextBlocks().forEach(textBlock -> headerBuilder.append(textBlock.getText()));
String headerName = headerBuilder.toString()
.replaceAll("\n", "")
.replaceAll(" ", "")
.replaceAll("-", "");
tabularData.put(headerName, new CellValue(cell.getTextBlocks(), cellStart));
});
for (TextBlock textBlock : cell.getTextBlocks()) {
// TODO avoid cell overlap merging.
searchableRow.addAll(textBlock.getSequences());
}
cellStarts.add(cellStart);
start = start + cell.toString().trim().length() + 1;
}
Set<Entity> rowEntities = findEntities(searchableRow, table.getHeadline(), sectionNumber, dictionary
.getDictionaryModels(), local);
surroundingWordsService.addSurroundingText(rowEntities, searchableRow, dictionary, cellStarts);
sectionSearchableTextPairs.add(new SectionSearchableTextPair(Section.builder()
.isLocal(local)
.dictionaryTypes(dictionary.getTypes())
.entities(hintsPerSectionNumber != null && hintsPerSectionNumber.containsKey(sectionNumber) ? Stream
.concat(rowEntities.stream(), hintsPerSectionNumber.get(sectionNumber).stream())
.collect(Collectors.toSet()) : rowEntities)
.text(searchableRow.getAsStringWithLinebreaks())
.searchText(searchableRow.toString())
.headline(table.getHeadline())
.sectionNumber(sectionNumber)
.tabularData(tabularData)
.build(), searchableRow));
sectionNumber++;
if (table.getColCount() == 2) {
sectionSearchableTextPairs.addAll(processTableAsOneText(classifiedDoc, table, manualRedactions, sectionNumber, dictionary, local, hintsPerSectionNumber));
} else {
sectionSearchableTextPairs.addAll(processTablePerRow(classifiedDoc, table, manualRedactions, sectionNumber, dictionary, local, hintsPerSectionNumber));
}
sectionNumber++;
sectionNumber.incrementAndGet();
}
sectionSearchableTextPairs.add(processText(classifiedDoc, paragraph.getSearchableText(), paragraph.getTextBlocks(), paragraph
.getHeadline(), manualRedactions, sectionNumber, dictionary, local, hintsPerSectionNumber, paragraph
.getImages()));
sectionNumber.incrementAndGet();
}
addSectionToManualRedactions(paragraph.getTextBlocks(), manualRedactions, paragraph.getHeadline(), sectionNumber);
Set<Entity> entities = findEntities(searchableText, paragraph.getHeadline(), sectionNumber, dictionary.getDictionaryModels(), local);
surroundingWordsService.addSurroundingText(entities, searchableText, dictionary);
for (Header header : classifiedDoc.getHeaders()) {
sectionSearchableTextPairs.add(processText(classifiedDoc, header.getSearchableText(), header.getTextBlocks(), "Header", manualRedactions, sectionNumber, dictionary, local, hintsPerSectionNumber, new ArrayList<>()));
sectionNumber.incrementAndGet();
}
sectionSearchableTextPairs.add(new SectionSearchableTextPair(Section.builder()
.isLocal(local)
.dictionaryTypes(dictionary.getTypes())
.entities(hintsPerSectionNumber != null && hintsPerSectionNumber.containsKey(sectionNumber) ? Stream
.concat(entities.stream(), hintsPerSectionNumber.get(sectionNumber).stream())
.collect(Collectors.toSet()) : entities)
.text(searchableText.getAsStringWithLinebreaks())
.searchText(searchableText.toString())
.headline(paragraph.getHeadline())
.sectionNumber(sectionNumber)
.build(), searchableText));
for (Footer footer : classifiedDoc.getFooters()) {
sectionSearchableTextPairs.add(processText(classifiedDoc, footer.getSearchableText(), footer.getTextBlocks(), "Footer", manualRedactions, sectionNumber, dictionary, local, hintsPerSectionNumber, new ArrayList<>()));
sectionNumber.incrementAndGet();
}
sectionNumber++;
for (UnclassifiedText unclassifiedText : classifiedDoc.getUnclassifiedTexts()) {
sectionSearchableTextPairs.add(processText(classifiedDoc, unclassifiedText.getSearchableText(), unclassifiedText
.getTextBlocks(), "", manualRedactions, sectionNumber, dictionary, local, hintsPerSectionNumber, new ArrayList<>()));
sectionNumber.incrementAndGet();
}
sectionSearchableTextPairs.forEach(sectionSearchableTextPair -> {
Section analysedRowSection = droolsExecutionService.executeRules(sectionSearchableTextPair.getSection());
documentEntities.addAll(clearAndFindPositions(analysedRowSection.getEntities(), sectionSearchableTextPair.getSearchableText(), dictionary));
Section analysedRowSection = droolsExecutionService.executeRules(kieContainer, sectionSearchableTextPair.getSection());
documentEntities.addAll(analysedRowSection.getEntities());
for (Image image : analysedRowSection.getImages()) {
classifiedDoc.getImages().computeIfAbsent(image.getPage(), (a) -> new HashSet<>()).add(image);
}
analysedRowSection.getLocalDictionaryAdds().keySet().forEach(key -> {
if (dictionary.isRecommendation(key)) {
@@ -211,23 +160,207 @@ public class EntityRedactionService {
}
private Set<Entity> clearAndFindPositions(Set<Entity> entities, SearchableText text, Dictionary dictionary) {
private List<SectionSearchableTextPair> processTablePerRow(Document classifiedDoc, Table table,
ManualRedactions manualRedactions,
AtomicInteger sectionNumber, Dictionary dictionary,
boolean local,
Map<Integer, Set<Entity>> hintsPerSectionNumber) {
removeEntitiesContainedInLarger(entities);
List<SectionSearchableTextPair> sectionSearchableTextPairs = new ArrayList<>();
for (List<Cell> row : table.getRows()) {
SearchableText searchableRow = new SearchableText();
Map<String, CellValue> tabularData = new HashMap<>();
int start = 0;
List<Integer> cellStarts = new ArrayList<>();
SectionText sectionText = new SectionText();
for (Cell cell : row) {
if (CollectionUtils.isEmpty(cell.getTextBlocks())) {
continue;
}
SectionArea sectionArea = new SectionArea(new Point((float) cell.getX(), (float) cell.getY()), (float) cell
.getWidth(), (float) cell.getHeight(), cell.getTextBlocks()
.get(0)
.getSequences()
.get(0)
.getPage());
sectionText.getSectionAreas().add(sectionArea);
sectionText.getTextBlocks().addAll(cell.getTextBlocks());
addSectionToManualRedactions(cell.getTextBlocks(), manualRedactions, table.getHeadline(), sectionNumber.intValue());
int cellStart = start;
if (!cell.isHeaderCell()) {
cell.getHeaderCells().forEach(headerCell -> {
StringBuilder headerBuilder = new StringBuilder();
headerCell.getTextBlocks().forEach(textBlock -> headerBuilder.append(textBlock.getText()));
String headerName = headerBuilder.toString()
.replaceAll("\n", "")
.replaceAll(" ", "")
.replaceAll("-", "");
sectionArea.setHeader(headerName);
tabularData.put(headerName, new CellValue(cell.getTextBlocks(), cellStart));
});
}
for (TextBlock textBlock : cell.getTextBlocks()) {
// TODO avoid cell overlap merging.
searchableRow.addAll(textBlock.getSequences());
}
cellStarts.add(cellStart);
start = start + cell.toString().trim().length() + 1;
for (Entity entity : entities) {
if (entity.getPositionSequences().isEmpty()) {
entity.setPositionSequences(text.getSequences(entity.getWord(), dictionary.isCaseInsensitiveDictionary(entity
.getType()), entity.getTargetSequences()));
}
Set<Entity> rowEntities = findEntities(searchableRow, table.getHeadline(), sectionNumber.intValue(), dictionary, local);
surroundingWordsService.addSurroundingText(rowEntities, searchableRow, dictionary, cellStarts);
sectionSearchableTextPairs.add(new SectionSearchableTextPair(Section.builder()
.isLocal(local)
.dictionaryTypes(dictionary.getTypes())
.entities(hintsPerSectionNumber != null && hintsPerSectionNumber.containsKey(sectionNumber.intValue()) ? Stream
.concat(rowEntities.stream(), hintsPerSectionNumber.get(sectionNumber.intValue()).stream())
.collect(Collectors.toSet()) : rowEntities)
.text(searchableRow.getAsStringWithLinebreaks())
.searchText(searchableRow.toString())
.headline(table.getHeadline())
.sectionNumber(sectionNumber.intValue())
.tabularData(tabularData)
.searchableText(searchableRow)
.dictionary(dictionary)
.build(), searchableRow));
if (!local) {
sectionText.setText(searchableRow.toString());
sectionText.setHeadline(table.getHeadline());
sectionText.setSectionNumber(sectionNumber.intValue());
sectionText.setTable(true);
sectionText.setTabularData(tabularData);
sectionText.setCellStarts(cellStarts);
classifiedDoc.getSectionText().add(sectionText);
}
sectionNumber.incrementAndGet();
}
return entities;
return sectionSearchableTextPairs;
}
private Set<Entity> findEntities(SearchableText searchableText, String headline, int sectionNumber,
List<DictionaryModel> dictionary, boolean local) {
private List<SectionSearchableTextPair> processTableAsOneText(Document classifiedDoc, Table table,
ManualRedactions manualRedactions,
AtomicInteger sectionNumber, Dictionary dictionary,
boolean local,
Map<Integer, Set<Entity>> hintsPerSectionNumber) {
List<SectionSearchableTextPair> sectionSearchableTextPairs = new ArrayList<>();
SearchableText entireTableText = new SearchableText();
SectionText sectionText = new SectionText();
for (List<Cell> row : table.getRows()) {
for (Cell cell : row) {
if (CollectionUtils.isEmpty(cell.getTextBlocks())) {
continue;
}
if (!local) {
SectionArea sectionArea = new SectionArea(new Point((float) cell.getX(), (float) cell.getY()), (float) cell
.getWidth(), (float) cell.getHeight(), cell.getTextBlocks()
.get(0)
.getSequences()
.get(0)
.getPage());
sectionText.getTextBlocks().addAll(cell.getTextBlocks());
sectionText.getSectionAreas().add(sectionArea);
}
for (TextBlock textBlock : cell.getTextBlocks()) {
entireTableText.addAll(textBlock.getSequences());
}
addSectionToManualRedactions(cell.getTextBlocks(), manualRedactions, table.getHeadline(), sectionNumber.intValue());
}
}
Set<Entity> rowEntities = findEntities(entireTableText, table.getHeadline(), sectionNumber.intValue(), dictionary, local);
surroundingWordsService.addSurroundingText(rowEntities, entireTableText, dictionary);
sectionSearchableTextPairs.add(new SectionSearchableTextPair(Section.builder()
.isLocal(local)
.dictionaryTypes(dictionary.getTypes())
.entities(hintsPerSectionNumber != null && hintsPerSectionNumber.containsKey(sectionNumber.intValue()) ? Stream
.concat(rowEntities.stream(), hintsPerSectionNumber.get(sectionNumber.intValue()).stream())
.collect(Collectors.toSet()) : rowEntities)
.text(entireTableText.getAsStringWithLinebreaks())
.searchText(entireTableText.toString())
.headline(table.getHeadline())
.sectionNumber(sectionNumber.intValue())
.searchableText(entireTableText)
.dictionary(dictionary)
.build(), entireTableText));
if (!local) {
sectionText.setText(entireTableText.toString());
sectionText.setHeadline(table.getHeadline());
sectionText.setSectionNumber(sectionNumber.intValue());
sectionText.setTable(true);
classifiedDoc.getSectionText().add(sectionText);
}
return sectionSearchableTextPairs;
}
private SectionSearchableTextPair processText(Document classifiedDoc, SearchableText searchableText,
List<TextBlock> paragraphTextBlocks, String headline,
ManualRedactions manualRedactions, AtomicInteger sectionNumber,
Dictionary dictionary, boolean local,
Map<Integer, Set<Entity>> hintsPerSectionNumber,
List<PdfImage> images) {
if (!local) {
SectionText sectionText = new SectionText();
for (TextBlock paragraphTextBlock : paragraphTextBlocks) {
SectionArea sectionArea = new SectionArea(new Point(paragraphTextBlock.getMinX(), paragraphTextBlock.getMinY()), paragraphTextBlock
.getWidth(), paragraphTextBlock.getHeight(), paragraphTextBlock.getPage());
sectionText.getSectionAreas().add(sectionArea);
}
sectionText.setText(searchableText.toString());
sectionText.setHeadline(headline);
sectionText.setSectionNumber(sectionNumber.intValue());
sectionText.setTable(false);
sectionText.setImages(images.stream()
.map(image -> convert(image, sectionNumber.intValue(), headline))
.collect(Collectors.toSet()));
sectionText.setTextBlocks(paragraphTextBlocks);
classifiedDoc.getSectionText().add(sectionText);
}
addSectionToManualRedactions(paragraphTextBlocks, manualRedactions, headline, sectionNumber.intValue());
Set<Entity> entities = findEntities(searchableText, headline, sectionNumber.intValue(), dictionary, local);
surroundingWordsService.addSurroundingText(entities, searchableText, dictionary);
return new SectionSearchableTextPair(Section.builder()
.isLocal(local)
.dictionaryTypes(dictionary.getTypes())
.entities(hintsPerSectionNumber != null && hintsPerSectionNumber.containsKey(sectionNumber.intValue()) ? Stream
.concat(entities.stream(), hintsPerSectionNumber.get(sectionNumber.intValue()).stream())
.collect(Collectors.toSet()) : entities)
.text(searchableText.getAsStringWithLinebreaks())
.searchText(searchableText.toString())
.headline(headline)
.sectionNumber(sectionNumber.intValue())
.searchableText(searchableText)
.dictionary(dictionary)
.images(images.stream()
.map(image -> convert(image, sectionNumber.intValue(), headline))
.collect(Collectors.toSet()))
.build(), searchableText);
}
public Set<Entity> findEntities(SearchableText searchableText, String headline, int sectionNumber,
Dictionary dictionary, boolean local) {
Set<Entity> found = new HashSet<>();
String searchableString = searchableText.toString();
@@ -236,65 +369,15 @@ public class EntityRedactionService {
}
String lowercaseInputString = searchableString.toLowerCase();
for (DictionaryModel model : dictionary) {
for (DictionaryModel model : dictionary.getDictionaryModels()) {
if (model.isCaseInsensitive()) {
found.addAll(find(lowercaseInputString, model.getValues(local), model.getType(), headline, sectionNumber, local));
found.addAll(EntitySearchUtils.find(lowercaseInputString, model.getValues(local), model.getType(), headline, sectionNumber, local, model.isDossierDictionary()));
} else {
found.addAll(find(searchableString, model.getValues(local), model.getType(), headline, sectionNumber, local));
found.addAll(EntitySearchUtils.find(searchableString, model.getValues(local), model.getType(), headline, sectionNumber, local, model.isDossierDictionary()));
}
}
removeEntitiesContainedInLarger(found);
return found;
}
private Set<Entity> find(String inputString, Set<String> values, String type, String headline, int sectionNumber,
boolean local) {
Set<Entity> found = new HashSet<>();
for (String value : values) {
if (value.trim().length() <= 2) {
continue;
}
int startIndex;
int stopIndex = 0;
do {
startIndex = inputString.indexOf(value, stopIndex);
stopIndex = startIndex + value.length();
if (startIndex > -1 && (startIndex == 0 || Character.isWhitespace(inputString.charAt(startIndex - 1)) || isSeparator(inputString
.charAt(startIndex - 1))) && (stopIndex == inputString.length() || isSeparator(inputString.charAt(stopIndex)))) {
found.add(new Entity(inputString.substring(startIndex, stopIndex), type, startIndex, stopIndex, headline, sectionNumber, !local));
}
} while (startIndex > -1);
}
return found;
}
private boolean isSeparator(char c) {
return Character.isWhitespace(c) || Pattern.matches("\\p{Punct}", String.valueOf(c)) || c == '\"' || c == '‘' || c == '’';
}
public void removeEntitiesContainedInLarger(Set<Entity> entities) {
List<Entity> wordsToRemove = new ArrayList<>();
for (Entity word : entities) {
for (Entity inner : entities) {
if (inner.getWord().length() < word.getWord()
.length() && inner.getStart() >= word.getStart() && inner.getEnd() <= word.getEnd() && word != inner && word
.getSectionNumber() == inner.getSectionNumber()) {
wordsToRemove.add(inner);
}
}
}
entities.removeAll(wordsToRemove);
return EntitySearchUtils.clearAndFindPositions(found, searchableText, dictionary);
}
@@ -317,4 +400,18 @@ public class EntityRedactionService {
}
}
private Image convert(PdfImage pdfImage, int sectionNumber, String headline) {
return Image.builder()
.type(pdfImage.getImageType().equals(ImageType.OTHER) ? "image" : pdfImage.getImageType()
.name()
.toLowerCase(Locale.ROOT))
.position(pdfImage.getPosition())
.sectionNumber(sectionNumber)
.section(headline)
.page(pdfImage.getPage())
.build();
}
}
@@ -0,0 +1,62 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import com.iqser.red.service.redaction.v1.server.classification.model.Page;
import com.iqser.red.service.redaction.v1.server.client.ImageClassificationClient;
import com.iqser.red.service.redaction.v1.server.client.ImageClassificationResponse;
import com.iqser.red.service.redaction.v1.server.client.MockMultipartFile;
import com.iqser.red.service.redaction.v1.server.redaction.model.ImageType;
import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
import org.springframework.stereotype.Service;
import javax.imageio.ImageIO;
import java.io.ByteArrayOutputStream;
@Slf4j
@Service
@RequiredArgsConstructor
public class ImageClassificationService {
private final ImageClassificationClient imageClassificationClient;
private final RedactionServiceSettings settings;
public void classifyImages(Page page) {
page.getImages().forEach(image -> {
if (settings.isEnableImageClassification()) {
long start = System.currentTimeMillis();
try (ByteArrayOutputStream baos = new ByteArrayOutputStream()) {
ImageIO.write(image.getImage(), "png", baos);
var mockFile = new MockMultipartFile("file", "Image.png", "image/png", baos.toByteArray());
ImageClassificationResponse response = imageClassificationClient.classify(mockFile);
image.setImageType(ImageType.valueOf(response.getCategory()));
} catch (Exception e) {
log.error("Could not classify image", e);
image.setImageType(ImageType.OTHER);
}
log.info("Image classification took: " + (System.currentTimeMillis() - start));
} else {
image.setImageType(ImageType.OTHER);
}
image.getImage().flush();
image.setImage(null);
if (image.getImageType().equals(ImageType.OTHER)) {
page.getTextBlocks().forEach(textblock -> {
if (image.getPosition()
.contains(textblock.getMinX(), textblock.getMinY(), textblock.getWidth(), textblock.getHeight())) {
image.setImageType(ImageType.OCR);
}
});
}
});
}
}
@@ -0,0 +1,292 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import com.iqser.red.service.file.management.v1.api.model.FileType;
import com.iqser.red.service.redaction.v1.model.*;
import com.iqser.red.service.redaction.v1.server.classification.model.Document;
import com.iqser.red.service.redaction.v1.server.classification.model.SectionText;
import com.iqser.red.service.redaction.v1.server.classification.model.Text;
import com.iqser.red.service.redaction.v1.server.exception.RedactionException;
import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
import com.iqser.red.service.redaction.v1.server.redaction.model.*;
import com.iqser.red.service.redaction.v1.server.redaction.utils.EntitySearchUtils;
import com.iqser.red.service.redaction.v1.server.segmentation.PdfSegmentationService;
import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
import lombok.RequiredArgsConstructor;
import lombok.SneakyThrows;
import lombok.extern.slf4j.Slf4j;
import org.kie.api.runtime.KieContainer;
import org.springframework.stereotype.Service;
import org.springframework.web.bind.annotation.RequestBody;
import java.util.*;
import java.util.stream.Collectors;
import java.util.stream.Stream;
@Slf4j
@Service
@RequiredArgsConstructor
public class ReanalyzeService {
private final DictionaryService dictionaryService;
private final DroolsExecutionService droolsExecutionService;
private final SurroundingWordsService surroundingWordsService;
private final EntityRedactionService entityRedactionService;
private final RedactionLogCreatorService redactionLogCreatorService;
private final RedactionStorageService redactionStorageService;
private final PdfSegmentationService pdfSegmentationService;
private final RedactionChangeLogService redactionChangeLogService;
private final AnalyzeResponseService analyzeResponseService;
public AnalyzeResult analyze(AnalyzeRequest analyzeRequest) {
long startTime = System.currentTimeMillis();
var pageCount = 0;
Document classifiedDoc;
try {
var storedObjectStream = redactionStorageService.getStoredObject(RedactionStorageService.StorageIdUtils.getStorageId(analyzeRequest
.getProjectId(), analyzeRequest.getFileId(), FileType.ORIGIN));
classifiedDoc = pdfSegmentationService.parseDocument(storedObjectStream);
pageCount = classifiedDoc.getPages().size();
} catch (Exception e) {
throw new RedactionException(e);
}
log.info("Document structure analysis successful, starting redaction analysis...");
entityRedactionService.processDocument(classifiedDoc, analyzeRequest.getRuleSetId(), analyzeRequest.getManualRedactions(), analyzeRequest
.getProjectId());
redactionLogCreatorService.createRedactionLog(classifiedDoc, pageCount, analyzeRequest.getManualRedactions(), analyzeRequest
.getRuleSetId());
log.info("Redaction analysis successful...");
var redactionLog = new RedactionLog(classifiedDoc.getRedactionLogEntities(), classifiedDoc.getDictionaryVersion()
.getRulesetVersion(), classifiedDoc.getRulesVersion(), analyzeRequest.getRuleSetId(), classifiedDoc.getDictionaryVersion()
.getDossierVersion());
log.info("Analyzed with rules {} and dictionary {} for ruleSet: {}", classifiedDoc.getRulesVersion(), classifiedDoc
.getDictionaryVersion(), analyzeRequest.getRuleSetId());
// first create changelog - this only happens when we migrate files analyzed via the old process and we don't want to loose changeLog data
var changeLog = redactionChangeLogService.createAndStoreChangeLog(analyzeRequest.getProjectId(), analyzeRequest.getFileId(), redactionLog);
// store redactionLog
redactionStorageService.storeObject(analyzeRequest.getProjectId(), analyzeRequest.getFileId(), FileType.REDACTION_LOG, redactionLog);
redactionStorageService.storeObject(analyzeRequest.getProjectId(), analyzeRequest.getFileId(), FileType.TEXT, new Text(pageCount, classifiedDoc
.getSectionText()));
redactionStorageService.storeObject(analyzeRequest.getProjectId(), analyzeRequest.getFileId(), FileType.SECTION_GRID, classifiedDoc
.getSectionGrid());
long duration = System.currentTimeMillis() - startTime;
return analyzeResponseService.createAnalyzeResponse(analyzeRequest.getProjectId(), analyzeRequest.getFileId(), duration, pageCount, redactionLog, changeLog);
}
@SneakyThrows
public AnalyzeResult reanalyze(@RequestBody AnalyzeRequest analyzeRequest) {
long startTime = System.currentTimeMillis();
var redactionLog = redactionStorageService.getRedactionLog(analyzeRequest.getProjectId(), analyzeRequest.getFileId());
var text = redactionStorageService.getText(analyzeRequest.getProjectId(), analyzeRequest.getFileId());
// not yet ready for reanalysis
if (redactionLog == null || text == null || text.getNumberOfPages() == 0) {
return analyze(analyzeRequest);
}
DictionaryIncrement dictionaryIncrement = dictionaryService.getDictionaryIncrements(analyzeRequest.getRuleSetId(), new DictionaryVersion(redactionLog
.getDictionaryVersion(), redactionLog.getDossierDictionaryVersion()), analyzeRequest.getProjectId());
Set<String> manualForceAndRemoveIds = getForceAndRemoveIds(analyzeRequest.getManualRedactions());
Map<String, List<Comment>> comments = null;
Set<ManualRedactionEntry> manualAdds = null;
if (analyzeRequest.getManualRedactions() != null) {
// TODO comments will be removed from redactionLog, so we ignore this first.
comments = analyzeRequest.getManualRedactions().getComments();
manualAdds = analyzeRequest.getManualRedactions().getEntriesToAdd();
}
Set<Integer> sectionsToReanalyse = new HashSet<>();
Map<Integer, Set<Image>> imageEntries = new HashMap<>();
for (RedactionLogEntry entry : redactionLog.getRedactionLogEntry()) {
if (entry.isManual() || manualForceAndRemoveIds.contains(entry.getId())) {
sectionsToReanalyse.add(entry.getSectionNumber());
}
if (entry.isImage() || entry.getType().equals("image")) {
imageEntries.computeIfAbsent(entry.getSectionNumber(), x -> new HashSet<>()).add(convert(entry));
}
}
for (SectionText sectionText : text.getSectionTexts()) {
if (EntitySearchUtils.sectionContainsAny(sectionText.getText(), dictionaryIncrement.getValues())) {
sectionsToReanalyse.add(sectionText.getSectionNumber());
}
if (manualAdds != null) {
for (SectionArea sectionArea : sectionText.getSectionAreas()) {
for (ManualRedactionEntry manualAdd : manualAdds) {
for (Rectangle manualPosition : manualAdd.getPositions()) {
if (sectionArea.contains(manualPosition)) {
manualAdd.setSection(sectionText.getHeadline());
manualAdd.setSectionNumber(sectionText.getSectionNumber());
}
}
}
}
}
}
log.info("Should reanalyze {} sections for request: {}", sectionsToReanalyse.size(), analyzeRequest);
if (sectionsToReanalyse.isEmpty() && (manualAdds == null || manualAdds.isEmpty())) {
return finalizeAnalysis(analyzeRequest, startTime, redactionLog, text, dictionaryIncrement);
}
List<SectionText> reanalysisSections = new ArrayList<>();
for (SectionText sectionText : text.getSectionTexts()) {
if (sectionsToReanalyse.contains(sectionText.getSectionNumber())) {
reanalysisSections.add(sectionText);
}
}
//--
KieContainer kieContainer = droolsExecutionService.updateRules(analyzeRequest.getRuleSetId());
Dictionary dictionary = dictionaryService.getDeepCopyDictionary(analyzeRequest.getRuleSetId(), analyzeRequest.getRuleSetId());
List<SectionSearchableTextPair> sectionSearchableTextPairs = new ArrayList<>();
for (SectionText reanalysisSection : reanalysisSections) {
Set<Entity> entities = entityRedactionService.findEntities(reanalysisSection.getSearchableText(), reanalysisSection
.getHeadline(), reanalysisSection.getSectionNumber(), dictionary, false);
if (reanalysisSection.getCellStarts() != null) {
surroundingWordsService.addSurroundingText(entities, reanalysisSection.getSearchableText(), dictionary, reanalysisSection
.getCellStarts());
} else {
surroundingWordsService.addSurroundingText(entities, reanalysisSection.getSearchableText(), dictionary);
}
sectionSearchableTextPairs.add(new SectionSearchableTextPair(Section.builder()
.isLocal(false)
.dictionaryTypes(dictionary.getTypes())
.entities(entities)
.text(reanalysisSection.getSearchableText().getAsStringWithLinebreaks())
.searchText(reanalysisSection.getSearchableText().toString())
.headline(reanalysisSection.getHeadline())
.sectionNumber(reanalysisSection.getSectionNumber())
.tabularData(reanalysisSection.getTabularData())
.searchableText(reanalysisSection.getSearchableText())
.dictionary(dictionary)
.images(reanalysisSection.getImages())
.build(), reanalysisSection.getSearchableText()));
}
Set<Entity> entities = new HashSet<>();
Map<Integer, Set<Image>> imagesPerPage = new HashMap<>();
sectionSearchableTextPairs.forEach(sectionSearchableTextPair -> {
Section analysedRowSection = droolsExecutionService.executeRules(kieContainer, sectionSearchableTextPair.getSection());
entities.addAll(analysedRowSection.getEntities());
EntitySearchUtils.removeEntitiesContainedInLarger(entities);
for (Image image : analysedRowSection.getImages()) {
imagesPerPage.computeIfAbsent(image.getPage(), (a) -> new HashSet<>()).add(image);
}
});
Map<Integer, List<Entity>> entitiesPerPage = new HashMap<>();
for (Entity entity : entities) {
Map<Integer, List<EntityPositionSequence>> sequenceOnPage = new HashMap<>();
for (EntityPositionSequence entityPositionSequence : entity.getPositionSequences()) {
sequenceOnPage.computeIfAbsent(entityPositionSequence.getPageNumber(), (x) -> new ArrayList<>())
.add(entityPositionSequence);
}
for (Map.Entry<Integer, List<EntityPositionSequence>> entry : sequenceOnPage.entrySet()) {
entitiesPerPage.computeIfAbsent(entry.getKey(), (x) -> new ArrayList<>())
.add(new Entity(entity.getWord(), entity.getType(), entity.isRedaction(), entity.getRedactionReason(), entry
.getValue(), entity.getHeadline(), entity.getMatchedRule(), entity.getSectionNumber(), entity
.getLegalBasis(), entity.isDictionaryEntry(), entity.getTextBefore(), entity.getTextAfter(), entity
.getStart(), entity.getEnd(), entity.isDossierDictionaryEntry()));
}
}
List<RedactionLogEntry> newRedactionLogEntries = new ArrayList<>();
for (int page = 1; page <= text.getNumberOfPages(); page++) {
if (entitiesPerPage.get(page) != null) {
newRedactionLogEntries.addAll(redactionLogCreatorService.addEntries(entitiesPerPage, analyzeRequest.getManualRedactions(), page, analyzeRequest
.getRuleSetId()));
}
if (imagesPerPage.get(page) != null) {
newRedactionLogEntries.addAll(redactionLogCreatorService.addImageEntries(imagesPerPage, analyzeRequest.getManualRedactions(), page, analyzeRequest
.getRuleSetId()));
}
newRedactionLogEntries.addAll(redactionLogCreatorService.addManualAddEntries(manualAdds, comments, page, analyzeRequest
.getRuleSetId()));
}
redactionLog.getRedactionLogEntry()
.removeIf(entry -> sectionsToReanalyse.contains(entry.getSectionNumber()) && !entry.isImage() || entry.getSectionNumber() == 0 && !entry
.isImage());
redactionLog.getRedactionLogEntry().addAll(newRedactionLogEntries);
return finalizeAnalysis(analyzeRequest, startTime, redactionLog, text, dictionaryIncrement);
}
private AnalyzeResult finalizeAnalysis(@RequestBody AnalyzeRequest analyzeRequest, long startTime,
RedactionLog redactionLog, Text text,
DictionaryIncrement dictionaryIncrement) {
redactionLog.setDictionaryVersion(dictionaryIncrement.getDictionaryVersion().getRulesetVersion());
redactionLog.setDossierDictionaryVersion(dictionaryIncrement.getDictionaryVersion().getDossierVersion());
var changeLog = redactionChangeLogService.createAndStoreChangeLog(analyzeRequest.getProjectId(), analyzeRequest.getFileId(), redactionLog);
redactionStorageService.storeObject(analyzeRequest.getProjectId(), analyzeRequest.getFileId(), FileType.REDACTION_LOG, redactionLog);
long duration = System.currentTimeMillis() - startTime;
return analyzeResponseService.createAnalyzeResponse(analyzeRequest.getProjectId(), analyzeRequest.getFileId(), duration, text
.getNumberOfPages(), redactionLog, changeLog);
}
private Set<String> getForceAndRemoveIds(ManualRedactions manualRedactions) {
if (manualRedactions == null) {
return new HashSet<>();
}
return Stream.concat(manualRedactions.getIdsToRemove()
.stream()
.map(IdRemoval::getId), manualRedactions.getForceRedacts().stream().map(ManualForceRedact::getId))
.collect(Collectors.toSet());
}
public Image convert(RedactionLogEntry entry) {
Rectangle position = entry.getPositions().get(0);
return Image.builder()
.type(entry.getType())
.position(new RedRectangle2D(position.getTopLeft().getX(), position.getTopLeft()
.getY(), position.getWidth(), position.getHeight()))
.sectionNumber(entry.getSectionNumber())
.section(entry.getSection())
.page(position.getPage())
.build();
}
}
@@ -0,0 +1,93 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import com.iqser.red.service.file.management.v1.api.model.FileType;
import com.iqser.red.service.redaction.v1.model.ChangeType;
import com.iqser.red.service.redaction.v1.model.RedactionChangeLog;
import com.iqser.red.service.redaction.v1.model.RedactionChangeLogEntry;
import com.iqser.red.service.redaction.v1.model.RedactionLog;
import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
import org.springframework.stereotype.Service;
import java.util.ArrayList;
import java.util.List;
import java.util.stream.Collectors;
@Slf4j
@Service
@RequiredArgsConstructor
public class RedactionChangeLogService {
private final RedactionStorageService redactionStorageService;
public RedactionChangeLog createAndStoreChangeLog(String projectId, String fileId, RedactionLog currentRedactionLog) {
try {
RedactionLog previousRedactionLog = redactionStorageService.getRedactionLog(projectId, fileId);
var changeLog = createChangeLog(currentRedactionLog, previousRedactionLog);
redactionStorageService.storeObject(projectId, fileId, FileType.REDACTION_CHANGELOG, changeLog);
return changeLog;
} catch (Exception e) {
log.debug("Previous redaction log not available");
return null;
}
}
private RedactionChangeLog createChangeLog(RedactionLog currentRedactionLog, RedactionLog previousRedactionLog) {
if (previousRedactionLog == null) {
return null;
}
List<RedactionLogEntry> added = new ArrayList<>(currentRedactionLog.getRedactionLogEntry());
added.removeAll(previousRedactionLog.getRedactionLogEntry());
List<RedactionLogEntry> removed = new ArrayList<>(previousRedactionLog.getRedactionLogEntry());
removed.removeAll(currentRedactionLog.getRedactionLogEntry());
List<RedactionChangeLogEntry> changeLogEntries = added.stream()
.map(entry -> convert(entry, ChangeType.ADDED))
.collect(Collectors.toList());
changeLogEntries.addAll(removed.stream()
.map(entry -> convert(entry, ChangeType.REMOVED))
.collect(Collectors.toList()));
return new RedactionChangeLog(changeLogEntries, currentRedactionLog.getDictionaryVersion(), currentRedactionLog.getRulesVersion(), currentRedactionLog
.getRuleSetId());
}
private RedactionChangeLogEntry convert(RedactionLogEntry entry, ChangeType changeType) {
return RedactionChangeLogEntry.builder()
.id(entry.getId())
.type(entry.getType())
.value(entry.getValue())
.reason(entry.getReason())
.matchedRule(entry.getMatchedRule())
.legalBasis(entry.getLegalBasis())
.redacted(entry.isRedacted())
.isHint(entry.isHint())
.isRecommendation(entry.isRecommendation())
.section(entry.getSection())
.color(entry.getColor())
.positions(entry.getPositions())
.sectionNumber(entry.getSectionNumber())
.manual(entry.isManual())
.status(entry.getStatus())
.manualRedactionType(entry.getManualRedactionType())
.isDictionaryEntry(entry.isDictionaryEntry())
.textBefore(entry.getTextBefore())
.textAfter(entry.getTextAfter())
.comments(entry.getComments())
.changeType(changeType)
.isDossierDictionaryEntry(entry.isDossierDictionaryEntry())
.build();
}
}
@@ -0,0 +1,483 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import com.iqser.red.service.redaction.v1.model.*;
import com.iqser.red.service.redaction.v1.server.classification.model.Document;
import com.iqser.red.service.redaction.v1.server.classification.model.Paragraph;
import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
import com.iqser.red.service.redaction.v1.server.parsing.model.RedTextPosition;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
import com.iqser.red.service.redaction.v1.server.redaction.model.EntityPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.model.Image;
import com.iqser.red.service.redaction.v1.server.redaction.utils.IdBuilder;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Cell;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
import lombok.RequiredArgsConstructor;
import org.apache.commons.collections4.CollectionUtils;
import org.springframework.stereotype.Service;
import java.util.ArrayList;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.stream.Collectors;
@Service
@RequiredArgsConstructor
public class RedactionLogCreatorService {
private final DictionaryService dictionaryService;
public void createRedactionLog(Document classifiedDoc, int numberOfPages, ManualRedactions manualRedactions,
String ruleSetId) {
Set<Integer> manualRedactionPages = getManualRedactionPages(manualRedactions);
for (int page = 1; page <= numberOfPages; page++) {
addSectionGrid(classifiedDoc, page);
if (classifiedDoc.getEntities().get(page) != null) {
classifiedDoc.getRedactionLogEntities()
.addAll(addEntries(classifiedDoc.getEntities(), manualRedactions, page, ruleSetId));
}
if (manualRedactionPages.contains(page)) {
classifiedDoc.getRedactionLogEntities()
.addAll(addManualAddEntries(manualRedactions.getEntriesToAdd(), manualRedactions.getComments(), page, ruleSetId));
}
if (classifiedDoc.getImages().get(page) != null && !classifiedDoc.getImages().get(page).isEmpty()) {
classifiedDoc.getRedactionLogEntities()
.addAll(addImageEntries(classifiedDoc.getImages(), manualRedactions, page, ruleSetId));
}
}
}
public List<RedactionLogEntry> addImageEntries(Map<Integer, Set<Image>> images, ManualRedactions manualRedactions,
int pageNumber, String ruleSetId) {
List<RedactionLogEntry> redactionLogEntities = new ArrayList<>();
for (Image image : images.get(pageNumber)) {
String id = IdBuilder.buildId(image.getPosition(), pageNumber);
RedactionLogEntry redactionLogEntry = RedactionLogEntry.builder()
.id(id)
.color(getColorForImage(image, ruleSetId, false))
.isImage(true)
.type(image.getType())
.redacted(image.isRedaction())
.reason(image.getRedactionReason())
.legalBasis(image.getLegalBasis())
.matchedRule(image.getMatchedRule())
.isHint(dictionaryService.isHint(image.getType(), ruleSetId))
.manual(false)
.isDictionaryEntry(false)
.isRecommendation(false)
.positions(List.of(new Rectangle(new Point((float) image.getPosition()
.getX(), (float) image.getPosition().getY()), (float) image.getPosition()
.getWidth(), (float) image.getPosition().getHeight(), pageNumber)))
.sectionNumber(image.getSectionNumber())
.section(image.getSection())
.build();
if (manualRedactions != null && !manualRedactions.getIdsToRemove().isEmpty()) {
for (IdRemoval manualRemoval : manualRedactions.getIdsToRemove()) {
if (manualRemoval.getId().equals(id)) {
String manualOverrideReason = null;
if (manualRemoval.getStatus().equals(Status.APPROVED)) {
image.setRedaction(false);
redactionLogEntry.setRedacted(false);
redactionLogEntry.setStatus(Status.APPROVED);
manualOverrideReason = image.getRedactionReason() + ", removed by manual override";
redactionLogEntry.setColor(getColorForImage(image, ruleSetId, false));
} else if (manualRemoval.getStatus().equals(Status.REQUESTED)) {
manualOverrideReason = image.getRedactionReason() + ", requested to remove";
redactionLogEntry.setStatus(Status.REQUESTED);
redactionLogEntry.setColor(getColorForImage(image, ruleSetId, true));
} else {
redactionLogEntry.setStatus(Status.DECLINED);
}
image.setRedactionReason(manualOverrideReason != null ? manualOverrideReason : image.getRedactionReason());
redactionLogEntry.setReason(manualOverrideReason);
redactionLogEntry.setManual(true);
redactionLogEntry.setManualRedactionType(ManualRedactionType.REMOVE);
}
}
}
if (manualRedactions != null && !manualRedactions.getForceRedacts().isEmpty()) {
for (ManualForceRedact manualForceRedact : manualRedactions.getForceRedacts()) {
if (manualForceRedact.getId().equals(id)) {
String manualOverrideReason = null;
if (manualForceRedact.getStatus().equals(Status.APPROVED)) {
image.setRedaction(true);
redactionLogEntry.setRedacted(true);
redactionLogEntry.setStatus(Status.APPROVED);
redactionLogEntry.setColor(getColorForImage(image, ruleSetId, false));
manualOverrideReason = image.getRedactionReason() + ", forced by manual override";
redactionLogEntry.setLegalBasis(manualForceRedact.getLegalBasis());
} else if (manualForceRedact.getStatus().equals(Status.REQUESTED)) {
manualOverrideReason = image.getRedactionReason() + ", requested to force redact";
redactionLogEntry.setStatus(Status.REQUESTED);
redactionLogEntry.setColor(getColorForImage(image, ruleSetId, true));
redactionLogEntry.setLegalBasis(manualForceRedact.getLegalBasis());
} else {
redactionLogEntry.setStatus(Status.DECLINED);
}
image.setRedactionReason(manualOverrideReason != null ? manualOverrideReason : image.getRedactionReason());
redactionLogEntry.setReason(manualOverrideReason);
redactionLogEntry.setManual(true);
redactionLogEntry.setManualRedactionType(ManualRedactionType.FORCE_REDACT);
}
}
}
redactionLogEntities.add(redactionLogEntry);
}
return redactionLogEntities;
}
private Set<Integer> getManualRedactionPages(ManualRedactions manualRedactions) {
Set<Integer> manualRedactionPages = new HashSet<>();
if (manualRedactions == null) {
return manualRedactionPages;
}
manualRedactions.getEntriesToAdd().forEach(entry -> {
entry.getPositions().forEach(pos -> {
manualRedactionPages.add(pos.getPage());
});
});
return manualRedactionPages;
}
public List<RedactionLogEntry> addEntries(Map<Integer, List<Entity>> entities, ManualRedactions manualRedactions,
int page, String ruleSetId) {
List<RedactionLogEntry> redactionLogEntities = new ArrayList<>();
// Duplicates can exist due table extraction colums over multiple rows.
Set<String> processedIds = new HashSet<>();
entityLoop:
for (Entity entity : entities.get(page)) {
List<Comment> comments = null;
for (EntityPositionSequence entityPositionSequence : entity.getPositionSequences()) {
RedactionLogEntry redactionLogEntry = createRedactionLogEntry(entity, ruleSetId);
if (processedIds.contains(entityPositionSequence.getId())) {
// TODO refactor this outer loop jump as soon as we have the time.
continue entityLoop;
} else {
processedIds.add(entityPositionSequence.getId());
}
if (manualRedactions != null && !manualRedactions.getIdsToRemove().isEmpty()) {
for (IdRemoval manualRemoval : manualRedactions.getIdsToRemove()) {
if (manualRemoval.getId().equals(entityPositionSequence.getId())) {
comments = manualRedactions.getComments().get(manualRemoval.getId());
String manualOverrideReason = null;
if (manualRemoval.getStatus().equals(Status.APPROVED)) {
entity.setRedaction(false);
redactionLogEntry.setRedacted(false);
redactionLogEntry.setStatus(Status.APPROVED);
manualOverrideReason = entity.getRedactionReason() + ", removed by manual override";
redactionLogEntry.setColor(getColor(entity, ruleSetId, false));
} else if (manualRemoval.getStatus().equals(Status.REQUESTED)) {
manualOverrideReason = entity.getRedactionReason() + ", requested to remove";
redactionLogEntry.setStatus(Status.REQUESTED);
redactionLogEntry.setColor(getColor(entity, ruleSetId, true));
} else {
redactionLogEntry.setStatus(Status.DECLINED);
}
entity.setRedactionReason(manualOverrideReason != null ? manualOverrideReason : entity.getRedactionReason());
redactionLogEntry.setReason(manualOverrideReason);
redactionLogEntry.setManual(true);
redactionLogEntry.setManualRedactionType(ManualRedactionType.REMOVE);
}
}
}
if (manualRedactions != null && !manualRedactions.getForceRedacts().isEmpty()) {
for (ManualForceRedact manualForceRedact : manualRedactions.getForceRedacts()) {
if (manualForceRedact.getId().equals(entityPositionSequence.getId())) {
String manualOverrideReason = null;
if (manualForceRedact.getStatus().equals(Status.APPROVED)) {
entity.setRedaction(true);
redactionLogEntry.setRedacted(true);
redactionLogEntry.setStatus(Status.APPROVED);
redactionLogEntry.setColor(getColor(entity, ruleSetId, false));
manualOverrideReason = entity.getRedactionReason() + ", forced by manual override";
redactionLogEntry.setLegalBasis(manualForceRedact.getLegalBasis());
} else if (manualForceRedact.getStatus().equals(Status.REQUESTED)) {
manualOverrideReason = entity.getRedactionReason() + ", requested to force redact";
redactionLogEntry.setStatus(Status.REQUESTED);
redactionLogEntry.setColor(getColor(entity, ruleSetId, true));
redactionLogEntry.setLegalBasis(manualForceRedact.getLegalBasis());
} else {
redactionLogEntry.setStatus(Status.DECLINED);
}
entity.setRedactionReason(manualOverrideReason != null ? manualOverrideReason : entity.getRedactionReason());
redactionLogEntry.setReason(manualOverrideReason);
redactionLogEntry.setManual(true);
redactionLogEntry.setManualRedactionType(ManualRedactionType.FORCE_REDACT);
}
}
}
if (CollectionUtils.isNotEmpty(entityPositionSequence.getSequences())) {
List<Rectangle> rectanglesPerLine = getRectanglesPerLine(entityPositionSequence.getSequences()
.stream()
.flatMap(seq -> seq.getTextPositions().stream())
.collect(Collectors.toList()), page);
if (manualRedactions != null) {
comments = manualRedactions.getComments().get(entityPositionSequence.getId());
}
redactionLogEntry.setComments(comments);
redactionLogEntry.getPositions().addAll(rectanglesPerLine);
}
redactionLogEntry.setId(entityPositionSequence.getId());
// FIXME ids should never be null. Figure out why this happens.
if (redactionLogEntry.getId() != null) {
redactionLogEntities.add(redactionLogEntry);
}
}
}
return redactionLogEntities;
}
private List<Rectangle> getRectanglesPerLine(List<RedTextPosition> textPositions, int page) {
List<Rectangle> rectangles = new ArrayList<>();
if (textPositions.size() == 1) {
rectangles.add( TextPositionSequence.fromData(textPositions, page).getRectangle());
} else {
float y = textPositions.get(0).getYDirAdj();
int startIndex = 0;
for (int i = 1; i < textPositions.size(); i++) {
float yDirAdj = textPositions.get(i).getYDirAdj();
if (yDirAdj != y) {
rectangles.add( TextPositionSequence.fromData(textPositions.subList(startIndex, i), page).getRectangle());
y = yDirAdj;
startIndex = i;
}
}
if (startIndex != textPositions.size()) {
rectangles.add( TextPositionSequence.fromData(textPositions.subList(startIndex, textPositions.size()), page).getRectangle());
}
}
return rectangles;
}
public List<RedactionLogEntry> addManualAddEntries(Set<ManualRedactionEntry> manualAdds,
Map<String, List<Comment>> comments, int page,
String ruleSetId) {
List<RedactionLogEntry> redactionLogEntities = new ArrayList<>();
if (manualAdds == null) {
return redactionLogEntities;
}
for (ManualRedactionEntry manualRedactionEntry : manualAdds) {
String id = manualRedactionEntry.getId();
RedactionLogEntry redactionLogEntry = createRedactionLogEntry(manualRedactionEntry, id, ruleSetId);
List<Rectangle> rectanglesOnPage = new ArrayList<>();
for (Rectangle rectangle : manualRedactionEntry.getPositions()) {
if (page == rectangle.getPage()) {
rectanglesOnPage.add(rectangle);
redactionLogEntry.getPositions().add(rectangle);
}
}
redactionLogEntry.setComments(comments.get(id));
if (!rectanglesOnPage.isEmpty() && !approvedAndShouldBeInDictionary(manualRedactionEntry)) {
redactionLogEntities.add(redactionLogEntry);
}
}
return redactionLogEntities;
}
private boolean approvedAndShouldBeInDictionary(ManualRedactionEntry manualRedactionEntry) {
return manualRedactionEntry.getStatus().equals(Status.APPROVED) && manualRedactionEntry.isAddToDictionary();
}
private RedactionLogEntry createRedactionLogEntry(ManualRedactionEntry manualRedactionEntry, String id,
String ruleSetId) {
return RedactionLogEntry.builder()
.id(id)
.color(getColorForManualAdd(manualRedactionEntry.getType(), ruleSetId, manualRedactionEntry.getStatus()))
.reason(manualRedactionEntry.getReason())
.legalBasis(manualRedactionEntry.getLegalBasis())
.value(manualRedactionEntry.getValue())
.type(manualRedactionEntry.getType())
.redacted(true)
.isHint(false)
.section(manualRedactionEntry.getSection())
.sectionNumber(manualRedactionEntry.getSectionNumber())
.manual(true)
.status(manualRedactionEntry.getStatus())
.manualRedactionType(ManualRedactionType.ADD)
.isDictionaryEntry(false)
.isDossierDictionaryEntry(manualRedactionEntry.isAddToDossierDictionary())
.build();
}
private RedactionLogEntry createRedactionLogEntry(Entity entity, String ruleSetId) {
return RedactionLogEntry.builder()
.color(getColor(entity, ruleSetId, false))
.reason(entity.getRedactionReason())
.legalBasis(entity.getLegalBasis())
.value(entity.getWord())
.type(entity.getType())
.redacted(entity.isRedaction())
.isHint(isHint(entity, ruleSetId))
.isRecommendation(isRecommendation(entity, ruleSetId))
.section(entity.getHeadline())
.sectionNumber(entity.getSectionNumber())
.matchedRule(entity.getMatchedRule())
.isDictionaryEntry(entity.isDictionaryEntry())
.textAfter(entity.getTextAfter())
.textBefore(entity.getTextBefore())
.startOffset(entity.getStart())
.endOffset(entity.getEnd())
.isDossierDictionaryEntry(entity.isDossierDictionaryEntry())
.build();
}
private float[] getColor(Entity entity, String ruleSetId, boolean requestedToRemove) {
if (requestedToRemove) {
return dictionaryService.getRequestRemoveColor(ruleSetId);
}
if (!entity.isRedaction() && !isHint(entity, ruleSetId)) {
return dictionaryService.getNotRedactedColor(ruleSetId);
}
return dictionaryService.getColor(entity.getType(), ruleSetId);
}
private float[] getColorForManualAdd(String type, String ruleSetId, Status status) {
if (status.equals(Status.REQUESTED)) {
return dictionaryService.getRequestAddColor(ruleSetId);
} else if (status.equals(Status.DECLINED)) {
return dictionaryService.getNotRedactedColor(ruleSetId);
}
return getColor(type, ruleSetId);
}
private float[] getColor(String type, String ruleSetId) {
return dictionaryService.getColor(type, ruleSetId);
}
private float[] getColorForImage(Image image, String ruleSetId, boolean requestedToRemove) {
if (requestedToRemove) {
return dictionaryService.getRequestRemoveColor(ruleSetId);
}
if (!image.isRedaction() && !dictionaryService.isHint(image.getType(), ruleSetId)) {
return dictionaryService.getNotRedactedColor(ruleSetId);
}
return dictionaryService.getColor(image.getType(), ruleSetId);
}
private boolean isHint(Entity entity, String ruleSetId) {
return dictionaryService.isHint(entity.getType(), ruleSetId);
}
private boolean isRecommendation(Entity entity, String ruleSetId) {
return dictionaryService.isRecommendation(entity.getType(), ruleSetId);
}
private void addSectionGrid(Document classifiedDoc, int page) {
for (Paragraph paragraph : classifiedDoc.getParagraphs()) {
for (int i = 0; i <= paragraph.getPageBlocks().size() - 1; i++) {
AbstractTextContainer textBlock = paragraph.getPageBlocks().get(i);
if (textBlock.getPage() != page) {
continue;
}
if (textBlock instanceof TextBlock) {
classifiedDoc.getSectionGrid()
.getRectanglesPerPage()
.computeIfAbsent(page, (x) -> new ArrayList<>())
.add(new SectionRectangle(new Point(textBlock.getMinX(), textBlock.getMinY()), textBlock.getWidth(), textBlock
.getHeight(), i + 1, paragraph.getPageBlocks().size()));
} else if (textBlock instanceof Table) {
List<CellRectangle> cellRectangles = new ArrayList<>();
for (List<Cell> row : ((Table) textBlock).getRows()) {
for (Cell cell : row) {
if (cell != null) {
cellRectangles.add(new CellRectangle(new Point((float) cell.getX(), (float) cell.getY()), (float) cell
.getWidth(), (float) cell.getHeight()));
}
}
}
classifiedDoc.getSectionGrid()
.getRectanglesPerPage()
.computeIfAbsent(page, (x) -> new ArrayList<>())
.add(new SectionRectangle(new Point(textBlock.getMinX(), textBlock.getMinY()), textBlock.getWidth(), textBlock
.getHeight(), i + 1, paragraph.getPageBlocks().size(), cellRectangles));
}
}
}
}
}
@@ -1,17 +1,15 @@
package com.iqser.red.service.redaction.v1.server.redaction.service;
import java.util.List;
import java.util.Set;
import org.springframework.stereotype.Service;
import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
import org.springframework.stereotype.Service;
import java.util.List;
import java.util.Set;
@Slf4j
@Service
@@ -94,7 +92,7 @@ public class SurroundingWordsService {
int numberOfWordsBefore = wordsBefore.length > redactionServiceSettings.getNumberOfSurroundingWords() ? redactionServiceSettings
.getNumberOfSurroundingWords() : wordsBefore.length;
if (wordsBefore.length > 0) {
entity.setTextBefore(concatWordsBefore(wordsBefore, numberOfWordsBefore));
entity.setTextBefore(concatWordsBefore(wordsBefore, numberOfWordsBefore, textBefore.endsWith(" ")));
}
}
@@ -106,13 +104,13 @@ public class SurroundingWordsService {
int numberOfWordsAfter = wordsAfter.length > redactionServiceSettings.getNumberOfSurroundingWords() ? redactionServiceSettings
.getNumberOfSurroundingWords() : wordsAfter.length;
if (wordsAfter.length > 0) {
entity.setTextAfter(concatWordsAfter(wordsAfter, numberOfWordsAfter));
entity.setTextAfter(concatWordsAfter(wordsAfter, numberOfWordsAfter, textAfter.startsWith(" ")));
}
}
}
private String concatWordsBefore(String[] words, int number) {
private String concatWordsBefore(String[] words, int number, boolean endWithSpace) {
StringBuilder sb = new StringBuilder();
@@ -122,11 +120,12 @@ public class SurroundingWordsService {
sb.append(words[i]).append(" ");
}
return sb.toString().trim();
String result = sb.toString().trim();
return endWithSpace ? result + " " : result;
}
private String concatWordsAfter(String[] words, int number) {
private String concatWordsAfter(String[] words, int number, boolean startWithSpace) {
StringBuilder sb = new StringBuilder();
@@ -134,7 +133,8 @@ public class SurroundingWordsService {
sb.append(words[i]).append(" ");
}
return sb.toString().trim();
String result = sb.toString().trim();
return startWithSpace ? " " + result : result;
}
}
@@ -0,0 +1,156 @@
package com.iqser.red.service.redaction.v1.server.redaction.utils;
import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryIncrementValue;
import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
import com.iqser.red.service.redaction.v1.server.redaction.model.EntityPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
import lombok.experimental.UtilityClass;
import lombok.extern.slf4j.Slf4j;
import java.util.*;
import java.util.regex.Pattern;
import java.util.stream.Collectors;
@Slf4j
@UtilityClass
@SuppressWarnings("PMD")
public class EntitySearchUtils {
public boolean sectionContainsAny(String sectionText, Set<DictionaryIncrementValue> values) {
String inputString = sectionText.toLowerCase(Locale.ROOT);
for (DictionaryIncrementValue value : values) {
String cleanValue = value.getValue().toLowerCase(Locale.ROOT).trim();
if (cleanValue.length() <= 2) {
continue;
}
int startIndex;
int stopIndex = 0;
do {
startIndex = inputString.indexOf(cleanValue, stopIndex);
stopIndex = startIndex + cleanValue.length();
if (startIndex > -1 && (startIndex == 0 || Character.isWhitespace(inputString.charAt(startIndex - 1)) || isSeparator(inputString
.charAt(startIndex - 1))) && (stopIndex == inputString.length() || isSeparator(inputString.charAt(stopIndex)))) {
if (value.isCaseinsensitive() || !value.isCaseinsensitive() && sectionText.substring(startIndex, stopIndex).equals(value.getValue())) {
return true;
}
}
} while (startIndex > -1);
}
return false;
}
public Set<Entity> find(String inputString, Set<String> values, String type, String headline, int sectionNumber,
boolean local, boolean isDossierDictionary) {
Set<Entity> found = new HashSet<>();
for (String value : values) {
String cleanValue = value.trim();
if (cleanValue.length() <= 2) {
continue;
}
int startIndex;
int stopIndex = 0;
do {
startIndex = inputString.indexOf(cleanValue, stopIndex);
stopIndex = startIndex + cleanValue.length();
if (startIndex > -1 && (startIndex == 0 || Character.isWhitespace(inputString.charAt(startIndex - 1)) || isSeparator(inputString
.charAt(startIndex - 1))) && (stopIndex == inputString.length() || isSeparator(inputString.charAt(stopIndex)))) {
found.add(new Entity(inputString.substring(startIndex, stopIndex), type, startIndex, stopIndex, headline, sectionNumber, !local, isDossierDictionary));
}
} while (startIndex > -1);
}
return found;
}
private boolean isSeparator(char c) {
return Character.isWhitespace(c) || Pattern.matches("\\p{Punct}", String.valueOf(c)) || c == '\"' || c == '‘' || c == '’';
}
public Set<Entity> clearAndFindPositions(Set<Entity> entities, SearchableText text, Dictionary dictionary) {
Map<String, List<Entity>> entitiesByWord = new HashMap<>();
for (Entity entity : entities) {
entitiesByWord.computeIfAbsent(entity.getWord(), (x) -> new ArrayList<>()).add(entity);
}
for (String word : entitiesByWord.keySet()) {
List<Entity> orderedEntities = entitiesByWord.get(word)
.stream()
.sorted(Comparator.comparing(Entity::getStart))
.collect(Collectors.toList());
Entity firstEntity = orderedEntities.get(0);
List<EntityPositionSequence> positionSequences = text.getSequences(firstEntity.getWord().trim(), dictionary.isCaseInsensitiveDictionary(firstEntity
.getType()), firstEntity.getTargetSequences());
for (int i = 0; i <= orderedEntities.size() - 1; i++) {
try {
orderedEntities.get(i).setPositionSequences(List.of(positionSequences.get(i)));
} catch (Exception e) {
log.warn("Mismatch between EntityPositionSequence and found Entity!");
}
}
}
removeEntitiesContainedInLarger(entities);
return entities;
}
public void removeEntitiesContainedInLarger(Set<Entity> entities) {
List<Entity> wordsToRemove = new ArrayList<>();
for (Entity word : entities) {
for (Entity inner : entities) {
if (inner.getWord().length() < word.getWord()
.length() && inner.getStart() >= word.getStart() && inner.getEnd() <= word.getEnd() && word != inner && word
.getSectionNumber() == inner.getSectionNumber()) {
wordsToRemove.add(inner);
}
}
}
entities.removeAll(wordsToRemove);
}
public void addEntitiesWithHigherRank(Set<Entity> entities, Set<Entity> found, Dictionary dictionary) {
found.forEach(f -> addEntitiesWithHigherRank(entities, f, dictionary));
}
public void addEntitiesWithHigherRank(Set<Entity> entities, Entity found, Dictionary dictionary) {
if (entities.contains(found)) {
Entity existing = entities.stream().filter(entity -> entity.equals(found)).findFirst().get();
if (dictionary.getDictionaryRank(existing.getType()) <= dictionary.getDictionaryRank(found.getType())) {
entities.remove(found);
}
}
entities.add(found);
}
public void addEntitiesIgnoreRank(Set<Entity> entities, Set<Entity> found) {
// HashSet keeps old value but we want the new.
entities.removeAll(found);
entities.addAll(found);
}
}
@@ -1,14 +1,14 @@
package com.iqser.red.service.redaction.v1.server.redaction.utils;
import java.nio.charset.StandardCharsets;
import java.util.List;
import com.google.common.hash.HashFunction;
import com.google.common.hash.Hashing;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.model.RedRectangle2D;
import lombok.experimental.UtilityClass;
import java.nio.charset.StandardCharsets;
import java.util.List;
@UtilityClass
public class IdBuilder {
@@ -23,4 +23,11 @@ public class IdBuilder {
return hashFunction.hashString(sb.toString(), StandardCharsets.UTF_8).toString();
}
public String buildId(RedRectangle2D rectangle2D, int page) {
return hashFunction.hashString("x" + rectangle2D.getX() + "y" + rectangle2D.getY() + "h" + rectangle2D.getHeight() + "w" + rectangle2D.getWidth() + "p" + page, StandardCharsets.UTF_8).toString();
}
}
@@ -1,12 +1,28 @@
package com.iqser.red.service.redaction.v1.server.redaction.utils;
import java.util.regex.Pattern;
import lombok.experimental.UtilityClass;
import java.util.HashMap;
import java.util.Map;
import java.util.regex.Pattern;
@UtilityClass
public class Patterns {
public static Map<String, Pattern> patternCache = new HashMap<>();
public static Pattern AUTHOR_TABLE_SPITTER = Pattern.compile("((((di)|(van)) )|[A-Z]’)?[A-ZÄÖÜ][\\wäöüéèê]{2,}( ?[A-ZÄÖÜ]{1,2}\\.)+|((((di)|(van)) )|[A-Z]’)?[A-ZÄÖÜ][\\wäöüéèê]{2,}( ?[A-ZÄÖÜ]{1,2} )+");
public Pattern getCompiledPattern(String pattern, boolean caseInsensitive) {
String patternKey = pattern + caseInsensitive;
if (patternCache.containsKey(patternKey)) {
return patternCache.get(patternKey);
}
Pattern compiledPattern = Pattern.compile(pattern, caseInsensitive ? Pattern.CASE_INSENSITIVE : 0);
patternCache.put(patternKey, compiledPattern);
return compiledPattern;
}
}
@@ -1,5 +1,7 @@
package com.iqser.red.service.redaction.v1.server.redaction.utils;
import lombok.experimental.UtilityClass;
import java.io.BufferedReader;
import java.io.IOException;
import java.io.InputStreamReader;
@@ -8,8 +10,6 @@ import java.nio.charset.StandardCharsets;
import java.util.Set;
import java.util.stream.Collectors;
import lombok.experimental.UtilityClass;
@UtilityClass
public class ResourceLoader {
@@ -27,4 +27,4 @@ public class ResourceLoader {
}
}
}
@@ -7,6 +7,7 @@ public class TextNormalizationUtilities {
/**
* Revert hyphenation due to line breaks.
*
* @param text Text to be processed.
* @return Text without line-break hyphenation.
*/
@@ -14,4 +15,4 @@ public class TextNormalizationUtilities {
return text.replaceAll("([^\\s\\d\\-]{2,})[\\-\\u00AD]\\R|\n\r(.+ )", "$1$2");
}
}
}
@@ -1,98 +1,276 @@
package com.iqser.red.service.redaction.v1.server.segmentation;
import java.io.IOException;
import java.util.ArrayList;
import java.util.List;
import org.apache.pdfbox.pdmodel.PDDocument;
import org.apache.pdfbox.pdmodel.PDPage;
import org.apache.pdfbox.pdmodel.common.PDRectangle;
import org.springframework.stereotype.Service;
import com.iqser.red.service.redaction.v1.server.classification.model.Document;
import com.iqser.red.service.redaction.v1.server.classification.model.Page;
import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
import com.iqser.red.service.redaction.v1.server.classification.service.BlockificationService;
import com.iqser.red.service.redaction.v1.server.classification.service.ClassificationService;
import com.iqser.red.service.redaction.v1.server.memory.MemoryStats;
import com.iqser.red.service.redaction.v1.server.parsing.PDFLinesTextStripper;
import com.iqser.red.service.redaction.v1.server.parsing.model.ParsedElements;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.model.PdfImage;
import com.iqser.red.service.redaction.v1.server.redaction.service.ImageClassificationService;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.CleanRulings;
import com.iqser.red.service.redaction.v1.server.tableextraction.service.RulingCleaningService;
import com.iqser.red.service.redaction.v1.server.tableextraction.service.TableExtractionService;
import lombok.RequiredArgsConstructor;
import lombok.extern.slf4j.Slf4j;
import org.apache.commons.io.IOUtils;
import org.apache.pdfbox.io.MemoryUsageSetting;
import org.apache.pdfbox.pdmodel.PDDocument;
import org.apache.pdfbox.pdmodel.PDPage;
import org.apache.pdfbox.pdmodel.common.PDRectangle;
import org.springframework.stereotype.Service;
import java.awt.Graphics;
import java.awt.geom.Rectangle2D;
import java.awt.image.BufferedImage;
import java.io.File;
import java.io.FileOutputStream;
import java.io.IOException;
import java.io.InputStream;
import java.util.ArrayList;
import java.util.List;
@Slf4j
@Service
@RequiredArgsConstructor
public class PdfSegmentationService {
private final static int MAX_PAGES_BEFORE_GC = 250;
private final RulingCleaningService rulingCleaningService;
private final TableExtractionService tableExtractionService;
private final BlockificationService blockificationService;
private final ClassificationService classificationService;
private final SectionsBuilderService sectionsBuilderService;
private final ImageClassificationService imageClassificationService;
public Document parseDocument(PDDocument pdDocument) throws IOException {
public Document parseDocument(InputStream documentInputStream) throws IOException {
return parseDocument(documentInputStream, false);
}
Document document = new Document();
public Document parseDocument(InputStream documentInputStream, boolean ignoreImages) throws IOException {
PDDocument pdDocument = null;
try {
//create tempFile
File tempFile = File.createTempFile("document", ".pdf");
IOUtils.copy(documentInputStream, new FileOutputStream(tempFile));
List<Page> pages = new ArrayList<>();
PDFLinesTextStripper stripper = new PDFLinesTextStripper();
for (int pageNumber = 1; pageNumber <= pdDocument.getNumberOfPages(); pageNumber++) {
PDPage pdPage = pdDocument.getPage(pageNumber - 1);
stripper.setPageNumber(pageNumber);
stripper.setStartPage(pageNumber);
stripper.setEndPage(pageNumber);
stripper.getText(pdDocument);
PDRectangle pdr = pdPage.getMediaBox();
boolean isLandscape = pdr.getWidth() > pdr.getHeight();
int rotation = pdPage.getRotation();
boolean isRotated = rotation != 0 && rotation != 360;
// initialize required variables
Document document = new Document();
List<Page> pages = new ArrayList<>();
ParsedElements parsedElements = ParsedElements.builder()
.rulings(stripper.getRulings())
.sequences(stripper.getTextPositionSequences())
.maxCharWidth(stripper.getMaxCharWidths())
.maxCharHeight(stripper.getMaxCharWidths())
.landscape(isLandscape)
.rotated(isRotated)
.build();
pdDocument = reinitializePDDocument(tempFile, null);
long pageCount = pdDocument.getNumberOfPages();
CleanRulings cleanRulings = rulingCleaningService.getCleanRulings(parsedElements.getRulings(), parsedElements
.getMaxCharWidth(), parsedElements.getMaxCharHeight());
for (int pageNumber = 1; pageNumber <= pageCount; pageNumber++) {
Page page = blockificationService.blockify(parsedElements.getSequences(), cleanRulings.getHorizontal(), cleanRulings
.getVertical());
page.setRotation(rotation);
if (pageNumber % MAX_PAGES_BEFORE_GC == 0) {
pdDocument = reinitializePDDocument(tempFile, pdDocument);
}
tableExtractionService.extractTables(cleanRulings, page);
PDFLinesTextStripper stripper = new PDFLinesTextStripper();
PDPage pdPage = pdDocument.getPage(pageNumber - 1);
stripper.setPageNumber(pageNumber);
stripper.setStartPage(pageNumber);
stripper.setEndPage(pageNumber);
stripper.setPdpage(pdPage);
stripper.getText(pdDocument);
buildPageStatistics(page);
PDRectangle pdr = pdPage.getMediaBox();
boolean isLandscape = pdr.getWidth() > pdr.getHeight();
page.setLandscape(parsedElements.isLandscape() || parsedElements.isRotated());
int rotation = pdPage.getRotation();
boolean isRotated = rotation != 0 && rotation != 360;
page.setPageNumber(pageNumber);
increaseDocumentStatistics(page, document);
pages.add(page);
CleanRulings cleanRulings = rulingCleaningService.getCleanRulings(stripper.getRulings(), stripper.getMinCharWidth(), stripper
.getMaxCharHeight());
Page page = blockificationService.blockify(stripper.getTextPositionSequences(), cleanRulings.getHorizontal(), cleanRulings
.getVertical());
page.setRotation(rotation);
page.setLandscape(isLandscape || isRotated);
page.setPageNumber(pageNumber);
List<PdfImage> mergedList = processImages(stripper.getImages());
page.setImages(mergedList);
tableExtractionService.extractTables(cleanRulings, page);
buildPageStatistics(page);
increaseDocumentStatistics(page, document);
if (!ignoreImages) {
imageClassificationService.classifyImages(page);
}
pages.add(page);
}
document.setPages(pages);
classificationService.classifyDocument(document);
sectionsBuilderService.buildSections(document);
sectionsBuilderService.addImagesToSections(document);
pdDocument = reinitializePDDocument(tempFile, pdDocument);
IOUtils.close(pdDocument);
tempFile.delete();
return document;
} finally {
if (pdDocument != null) {
pdDocument.close();
}
}
document.setPages(pages);
}
classificationService.classifyDocument(document);
private PDDocument reinitializePDDocument(File tempFile, PDDocument pdDocument) throws IOException {
if (pdDocument != null) {
pdDocument.close();
}
System.runFinalization();
System.gc();
sectionsBuilderService.buildSections(document);
MemoryStats.printMemoryStats();
var newPDDocument = PDDocument.load(tempFile, MemoryUsageSetting.setupTempFileOnly());
newPDDocument.setAllSecurityToBeRemoved(true);
return newPDDocument;
}
//merge images, if they are separated during pdf import, return new list of Pdfimages
private List<PdfImage> processImages(List<PdfImage> imageList) {
if (imageList.size() > 1) {
List<PdfImage> mergedList = new ArrayList<>();
int countElementsInList = 0;
boolean beginImage = true;
// a List of Boolean, true = candidate for merging, false = no merging
List<Boolean> candidatesList = getCandidatesList(imageList);
// loop through list, if there are candidates for merging (true), merge images and add it to mergedList
for (int i = 0; i < candidatesList.size(); i++) {
if (candidatesList.get(i)) {
if (beginImage) {
//begin of image, merge two parts of imageList
PdfImage mergedImage = mergeTwoImages(imageList.get(i), imageList.get(i + 1));
// image merge successful
if (mergedImage != null) {
mergedList.add(mergedImage);
countElementsInList++;
}
} else {
//middle of an image, merge current piece auf mergedList with image of imageList
PdfImage mergedImage = mergeTwoImages(mergedList.get(countElementsInList - 1), imageList.get(i + 1));
// image merge successful
if (mergedImage != null) {
mergedList.set(countElementsInList - 1, mergedImage);
}
}
beginImage = false;
} else {
// if the last candidate is false, then both images i and i+1 must be added
if (i == candidatesList.size() - 1) {
if (countElementsInList > 0 && mergedList.get(countElementsInList - 1) == imageList.get(i)) {
mergedList.add(imageList.get(i + 1));
} else {
mergedList.add(imageList.get(i));
mergedList.add(imageList.get(i + 1));
}
} else {
//first image is not splitted, add i to resultlist
if (beginImage) {
mergedList.add(imageList.get(i));
countElementsInList++;
} else {
// i is the end of an image, add begin of new image
mergedList.add(imageList.get(i + 1));
countElementsInList++;
beginImage = false;
}
}
}
}
return mergedList;
} else {
return imageList;
}
}
private PdfImage mergeTwoImages(PdfImage image1, PdfImage image2) {
// diese Angaben von getPosition scheinen nicht richtig zu sein, damit werden teile des Bildes abgeschnitten
double width = image1.getPosition().getWidth();
double height1 = image1.getPosition().getHeight();
double height2 = image2.getPosition().getHeight();
// mit den Werten, die unter Image gespeichert sind, funktioniert es
double img1height = image1.getImage().getHeight();
double img1width = image1.getImage().getWidth();
double img2height = image2.getImage().getHeight();
BufferedImage mergedImage = new BufferedImage((int) img1width, (int) (img1height + img2height), BufferedImage.TYPE_INT_RGB);
Graphics mergedImageGraphics = mergedImage.getGraphics();
try {
mergedImageGraphics.drawImage(image1.getImage(), 0, 0, null);
mergedImageGraphics.drawImage(image2.getImage(), 0, (int) (img1height), null);
// set Image, Position and type for merged Image
//set position for merged image with values of image1 and the height of both
Rectangle2D pos = new Rectangle2D.Float();
pos.setRect(image1.getPosition().getX(), image2.getPosition().getY(), width, height1 + height2);
PdfImage newPdfImage = new PdfImage(mergedImage, pos, image1.getPage());
// Graphics need to be disposed
image1.getImage().flush();
image2.getImage().flush();
mergedImage.flush();
mergedImageGraphics.dispose();
return newPdfImage;
} catch (Exception e) {
// failed to merge image
log.error("Failed to merge image", e);
return null;
}
return document;
}
//make a list of true and false, if the image is a candidate for merging
private List<Boolean> getCandidatesList(List<PdfImage> imageList) {
List<Boolean> candidatesList = new ArrayList<>();
for (int i = 0; i < imageList.size(); i++) {
if (i >= 1) {
candidatesList.add(isCandidateForMerging(imageList.get(i - 1), imageList.get(i)));
}
}
return candidatesList;
}
// evaluate if two images are candidates for merging, depending on their coordinates, width and height
private boolean isCandidateForMerging(PdfImage image1, PdfImage image2) {
double x1 = image1.getPosition().getX();
double y1 = image1.getPosition().getY();
double width1 = image1.getPosition().getWidth();
double x2 = image2.getPosition().getX();
double y2 = image2.getPosition().getY();
double width2 = image2.getPosition().getWidth();
double height2 = image2.getPosition().getHeight();
//if the x-coordinates and widths of images are equal and the height is equal to difference between y-coordinates,
// then it is the same picture and has to be merged -> return true
return x1 == x2 && width1 == width2 && Math.ceil(height2) == Math.ceil(y1 - y2) && width2 > (height2 / 6);
}
private void increaseDocumentStatistics(Page page, Document document) {
@@ -125,4 +303,5 @@ public class PdfSegmentationService {
}
}
}
@@ -1,21 +1,15 @@
package com.iqser.red.service.redaction.v1.server.segmentation;
import java.util.ArrayList;
import java.util.Collections;
import java.util.Iterator;
import java.util.List;
import java.util.stream.Collectors;
import org.apache.commons.collections4.CollectionUtils;
import org.springframework.stereotype.Service;
import com.iqser.red.service.redaction.v1.server.classification.model.Document;
import com.iqser.red.service.redaction.v1.server.classification.model.Page;
import com.iqser.red.service.redaction.v1.server.classification.model.Paragraph;
import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
import com.iqser.red.service.redaction.v1.server.classification.model.*;
import com.iqser.red.service.redaction.v1.server.redaction.model.PdfImage;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Cell;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
import org.apache.commons.collections4.CollectionUtils;
import org.springframework.stereotype.Service;
import java.util.*;
import java.util.stream.Collectors;
@Service
public class SectionsBuilderService {
@@ -24,25 +18,46 @@ public class SectionsBuilderService {
List<AbstractTextContainer> chunkWords = new ArrayList<>();
List<Paragraph> chunkBlockList = new ArrayList<>();
List<Header> headers = new ArrayList<>();
List<Footer> footers = new ArrayList<>();
List<UnclassifiedText> unclassifiedTexts = new ArrayList<>();
AbstractTextContainer prev = null;
String lastHeadline = "";
Table previousTable = null;
for (Page page : document.getPages()) {
List<TextBlock> header = new ArrayList<>();
List<TextBlock> footer = new ArrayList<>();
List<TextBlock> unclassifiedText = new ArrayList<>();
for (AbstractTextContainer current : page.getTextBlocks()) {
if (current.getClassification() == null || current.getClassification()
.equals("Header") || current.getClassification().equals("Footer")) {
if (current.getClassification() == null) {
continue;
}
current.setPage(page.getPageNumber());
if (prev != null && current.getClassification().startsWith("H ") && !prev.getClassification().startsWith("H ") || !document.isHeadlines()) {
if (current.getClassification().equals("Header")) {
header.add((TextBlock) current);
continue;
}
if (current.getClassification().equals("Footer")) {
footer.add((TextBlock) current);
continue;
}
if (current.getClassification().equals("Other")) {
unclassifiedText.add((TextBlock) current);
continue;
}
if (prev != null && current.getClassification().startsWith("H ") && !prev.getClassification()
.startsWith("H ") || !document.isHeadlines()) {
Paragraph chunkBlock = buildTextBlock(chunkWords, lastHeadline);
chunkBlock.setHeadline(lastHeadline);
if(document.isHeadlines()) {
if (document.isHeadlines()) {
lastHeadline = current.getText();
}
chunkBlockList.add(chunkBlock);
@@ -60,6 +75,16 @@ public class SectionsBuilderService {
chunkWords.add(current);
prev = current;
}
if (!header.isEmpty()) {
headers.add(new Header(header));
}
if (!footer.isEmpty()) {
footers.add(new Footer(footer));
}
if (!unclassifiedText.isEmpty()) {
unclassifiedTexts.add(new UnclassifiedText(unclassifiedText));
}
}
Paragraph chunkBlock = buildTextBlock(chunkWords, lastHeadline);
@@ -67,6 +92,70 @@ public class SectionsBuilderService {
chunkBlockList.add(chunkBlock);
document.setParagraphs(chunkBlockList);
document.setHeaders(headers);
document.setFooters(footers);
document.setUnclassifiedTexts(unclassifiedTexts);
}
public void addImagesToSections(Document document) {
Map<Integer, SortedSet<Paragraph>> paragraphMap = new HashMap<>();
for (Paragraph paragraph : document.getParagraphs()) {
for (AbstractTextContainer container : paragraph.getPageBlocks()) {
paragraphMap.computeIfAbsent(container.getPage(), x -> new TreeSet<>()).add(paragraph);
}
}
if (paragraphMap.isEmpty()) {
Paragraph paragraph = new Paragraph();
document.getParagraphs().add(paragraph);
paragraphMap.computeIfAbsent(1, x -> new TreeSet<>()).add(paragraph);
}
// first page is always a paragraph, else we can't process pages 1..N,
// where N is the first found page with a paragraph
if (paragraphMap.get(1) == null) {
Paragraph paragraph = new Paragraph();
document.getParagraphs().add(paragraph);
paragraphMap.computeIfAbsent(1, x -> new TreeSet<>()).add(paragraph);
}
for (Page page : document.getPages()) {
for (PdfImage image : page.getImages()) {
SortedSet<Paragraph> paragraphsOnPage = paragraphMap.get(page.getPageNumber());
if (paragraphsOnPage == null) {
int i = page.getPageNumber();
while (paragraphsOnPage == null) {
paragraphsOnPage = paragraphMap.get(i);
i--;
}
}
Float perviousEnd = 0f;
for (Paragraph paragraph : paragraphsOnPage) {
Float currentEnd = 0f;
for (AbstractTextContainer abs : paragraph.getPageBlocks()) {
if (abs.getPage() != page.getPageNumber()) {
continue;
}
if (abs.getMaxY() > currentEnd) {
currentEnd = abs.getMaxY();
}
}
if (image.getPosition().getY() >= perviousEnd && image.getPosition().getY() <= currentEnd) {
paragraph.getImages().add(image);
image.setAppendedToParagraph(true);
}
perviousEnd = currentEnd;
}
if (!image.isAppendedToParagraph()) {
paragraphsOnPage.first().getImages().add(image);
image.setAppendedToParagraph(true);
}
}
}
}
@@ -175,9 +264,9 @@ public class SectionsBuilderService {
private boolean hasInvalidHeaderInformation(Table table) {
return table.getRows().stream()
.flatMap(row -> row.stream()
.filter(cell -> CollectionUtils.isNotEmpty(cell.getHeaderCells())))
return table.getRows()
.stream()
.flatMap(row -> row.stream().filter(cell -> CollectionUtils.isNotEmpty(cell.getHeaderCells())))
.findAny()
.isEmpty();
@@ -188,6 +277,9 @@ public class SectionsBuilderService {
for (int i = table.getRowCount() - 1; i >= 0; i--) { // Non header rows are most likely at bottom of table
List<Cell> row = table.getRows().get(i);
if (row.size() == 1) {
continue;
}
boolean allNonHeader = true;
for (Cell cell : row) {
if (cell.isHeaderCell()) {
@@ -204,4 +296,4 @@ public class SectionsBuilderService {
}
}
}
@@ -1,15 +1,16 @@
package com.iqser.red.service.redaction.v1.server.settings;
import org.springframework.boot.context.properties.ConfigurationProperties;
import lombok.Data;
import org.springframework.boot.context.properties.ConfigurationProperties;
@Data
@ConfigurationProperties("redaction-service")
public class RedactionServiceSettings {
private int numberOfSurroundingWords = 3;
private int surroundingWordsOffsetWindow = 100;
}
private boolean enableImageClassification = true;
}
@@ -0,0 +1,103 @@
package com.iqser.red.service.redaction.v1.server.storage;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.iqser.red.service.file.management.v1.api.model.FileType;
import com.iqser.red.service.redaction.v1.model.RedactionLog;
import com.iqser.red.service.redaction.v1.model.SectionGrid;
import com.iqser.red.service.redaction.v1.server.classification.model.Text;
import com.iqser.red.storage.commons.exception.StorageObjectDoesNotExist;
import com.iqser.red.storage.commons.service.StorageService;
import lombok.Getter;
import lombok.RequiredArgsConstructor;
import lombok.SneakyThrows;
import lombok.extern.slf4j.Slf4j;
import org.springframework.core.io.InputStreamResource;
import org.springframework.stereotype.Service;
import java.io.IOException;
import java.io.InputStream;
@Slf4j
@Service
@RequiredArgsConstructor
public class RedactionStorageService {
private final ObjectMapper objectMapper;
private final StorageService storageService;
@SneakyThrows
public InputStream getStoredObject(String storageId) {
return storageService.getObject(storageId).getInputStream();
}
@SneakyThrows
public void storeObject(String projectId, String fileId, FileType fileType, Object any) {
storageService.storeObject(StorageIdUtils.getStorageId(projectId, fileId, fileType), objectMapper.writeValueAsBytes(any));
}
public RedactionLog getRedactionLog(String projectId, String fileId) {
InputStreamResource inputStreamResource;
try {
inputStreamResource = storageService.getObject(StorageIdUtils.getStorageId(projectId, fileId, FileType.REDACTION_LOG));
} catch (StorageObjectDoesNotExist e) {
log.debug("Text not available.");
return null;
}
try {
return objectMapper.readValue(inputStreamResource.getInputStream(), RedactionLog.class);
} catch (IOException e) {
throw new RuntimeException("Could not convert RedactionLog", e);
}
}
public Text getText(String projectId, String fileId) {
InputStreamResource inputStreamResource;
try {
inputStreamResource = storageService.getObject(StorageIdUtils.getStorageId(projectId, fileId, FileType.TEXT));
} catch (StorageObjectDoesNotExist e) {
log.debug("Text not available.");
return null;
}
try {
return objectMapper.readValue(inputStreamResource.getInputStream(), Text.class);
} catch (IOException e) {
throw new RuntimeException("Could not convert Text", e);
}
}
public SectionGrid getSectionGrid(String projectId, String fileId) {
var sectionGrid = storageService.getObject(StorageIdUtils.getStorageId(projectId, fileId, FileType.SECTION_GRID));
try {
return objectMapper.readValue(sectionGrid.getInputStream(), SectionGrid.class);
} catch (IOException e) {
throw new RuntimeException("Could not convert RedactionLog", e);
}
}
@RequiredArgsConstructor
public enum StorageType {
PARSED_DOCUMENT(".json");
@Getter
private final String extension;
}
public static class StorageIdUtils {
public static String getStorageId(String projectId, String fileId, FileType fileType) {
return projectId + "/" + fileId + "." + fileType.name() + fileType.getExtension();
}
}
}
@@ -1,7 +1,7 @@
package com.iqser.red.service.redaction.v1.server.tableextraction.model;
import com.fasterxml.jackson.annotation.JsonIgnore;
import com.iqser.red.service.redaction.v1.model.Rectangle;
import lombok.AllArgsConstructor;
import lombok.Data;
import lombok.NoArgsConstructor;
@@ -25,15 +25,17 @@ public abstract class AbstractTextContainer {
}
public boolean contains(Rectangle other) {
return page == other.getPage() && this.minX <= other.getTopLeft().getX() && this.maxX >= other.getTopLeft().getX() + other.getWidth() && this.minY <= other.getTopLeft().getY() && this.maxY >= other.getTopLeft().getY() + other.getHeight();
return page == other.getPage() && this.minX <= other.getTopLeft().getX() && this.maxX >= other.getTopLeft().getX() + other.getWidth() && this.minY <= other.getTopLeft().getY() && this.maxY >= other.getTopLeft().getY() + other.getHeight();
}
@JsonIgnore
public float getHeight() {
return maxY - minY;
}
@JsonIgnore
public float getWidth() {
return maxX - minX;
}
}
}
@@ -1,20 +1,21 @@
package com.iqser.red.service.redaction.v1.server.tableextraction.model;
import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.utils.TextNormalizationUtilities;
import lombok.Data;
import lombok.EqualsAndHashCode;
import lombok.NoArgsConstructor;
import java.awt.geom.Point2D;
import java.util.ArrayList;
import java.util.Iterator;
import java.util.List;
import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
import com.iqser.red.service.redaction.v1.server.parsing.model.TextPositionSequence;
import com.iqser.red.service.redaction.v1.server.redaction.utils.TextNormalizationUtilities;
import lombok.Data;
import lombok.EqualsAndHashCode;
@SuppressWarnings("serial")
@Data
@EqualsAndHashCode(callSuper = true)
@NoArgsConstructor
public class Cell extends Rectangle {
private List<TextBlock> textBlocks = new ArrayList<>();
@@ -69,7 +70,4 @@ public class Cell extends Rectangle {
}
}
}
@@ -1,10 +1,10 @@
package com.iqser.red.service.redaction.v1.server.tableextraction.model;
import java.util.List;
import lombok.Builder;
import lombok.Data;
import java.util.List;
@Data
@Builder
public class CleanRulings {
@@ -8,170 +8,171 @@ import java.util.List;
@SuppressWarnings("all")
public class Rectangle extends Rectangle2D.Float {
/**
* Ill-defined comparator, from when Rectangle was Comparable.
*
* see https://github.com/tabulapdf/tabula-java/issues/116
* @deprecated with no replacement
*/
@Deprecated
public static final Comparator<Rectangle> ILL_DEFINED_ORDER = new Comparator<Rectangle>() {
@Override public int compare(Rectangle o1, Rectangle o2) {
if (o1.equals(o2)) return 0;
if (o1.verticalOverlap(o2) > VERTICAL_COMPARISON_THRESHOLD) {
return o1.isLtrDominant() == -1 && o2.isLtrDominant() == -1
? - java.lang.Double.compare(o1.getX(), o2.getX())
: java.lang.Double.compare(o1.getX(), o2.getX());
} else {
return java.lang.Float.compare(o1.getBottom(), o2.getBottom());
}
}
};
protected static final float VERTICAL_COMPARISON_THRESHOLD = 0.4f;
protected static final float VERTICAL_COMPARISON_THRESHOLD = 0.4f;
/**
* Ill-defined comparator, from when Rectangle was Comparable.
* <p>
* see https://github.com/tabulapdf/tabula-java/issues/116
*
* @deprecated with no replacement
*/
@Deprecated
public static final Comparator<Rectangle> ILL_DEFINED_ORDER = new Comparator<Rectangle>() {
@Override
public int compare(Rectangle o1, Rectangle o2) {
if (o1.equals(o2)) return 0;
if (o1.verticalOverlap(o2) > VERTICAL_COMPARISON_THRESHOLD) {
return o1.isLtrDominant() == -1 && o2.isLtrDominant() == -1
? -java.lang.Double.compare(o1.getX(), o2.getX())
: java.lang.Double.compare(o1.getX(), o2.getX());
} else {
return java.lang.Float.compare(o1.getBottom(), o2.getBottom());
}
}
};
public Rectangle() {
super();
}
public Rectangle() {
super();
}
public Rectangle(float top, float left, float width, float height) {
super();
this.setRect(left, top, width, height);
}
public Rectangle(float top, float left, float width, float height) {
super();
this.setRect(left, top, width, height);
}
public int compareTo(Rectangle other) {
return ILL_DEFINED_ORDER.compare(this, other);
}
/**
* @param rectangles
* @return minimum bounding box that contains all the rectangles
*/
public static Rectangle boundingBoxOf(List<? extends Rectangle> rectangles) {
float minx = java.lang.Float.MAX_VALUE;
float miny = java.lang.Float.MAX_VALUE;
float maxx = java.lang.Float.MIN_VALUE;
float maxy = java.lang.Float.MIN_VALUE;
// I'm bad at Java and need this for fancy sorting in
// technology.tabula.TextChunk.
public int isLtrDominant() {
return 0;
}
for (Rectangle r : rectangles) {
minx = (float) Math.min(r.getMinX(), minx);
miny = (float) Math.min(r.getMinY(), miny);
maxx = (float) Math.max(r.getMaxX(), maxx);
maxy = (float) Math.max(r.getMaxY(), maxy);
}
return new Rectangle(miny, minx, maxx - minx, maxy - miny);
}
public float getArea() {
return this.width * this.height;
}
public int compareTo(Rectangle other) {
return ILL_DEFINED_ORDER.compare(this, other);
}
public float verticalOverlap(Rectangle other) {
return Math.max(0, Math.min(this.getBottom(), other.getBottom()) - Math.max(this.getTop(), other.getTop()));
}
// I'm bad at Java and need this for fancy sorting in
// technology.tabula.TextChunk.
public int isLtrDominant() {
return 0;
}
public boolean verticallyOverlaps(Rectangle other) {
return verticalOverlap(other) > 0;
}
public float getArea() {
return this.width * this.height;
}
public float horizontalOverlap(Rectangle other) {
return Math.max(0, Math.min(this.getRight(), other.getRight()) - Math.max(this.getLeft(), other.getLeft()));
}
public float verticalOverlap(Rectangle other) {
return Math.max(0, Math.min(this.getBottom(), other.getBottom()) - Math.max(this.getTop(), other.getTop()));
}
public boolean horizontallyOverlaps(Rectangle other) {
return horizontalOverlap(other) > 0;
}
public boolean verticallyOverlaps(Rectangle other) {
return verticalOverlap(other) > 0;
}
public float verticalOverlapRatio(Rectangle other) {
float rv = 0, delta = Math.min(this.getBottom() - this.getTop(), other.getBottom() - other.getTop());
public float horizontalOverlap(Rectangle other) {
return Math.max(0, Math.min(this.getRight(), other.getRight()) - Math.max(this.getLeft(), other.getLeft()));
}
if (other.getTop() <= this.getTop() && this.getTop() <= other.getBottom()
&& other.getBottom() <= this.getBottom()) {
rv = (other.getBottom() - this.getTop()) / delta;
} else if (this.getTop() <= other.getTop() && other.getTop() <= this.getBottom()
&& this.getBottom() <= other.getBottom()) {
rv = (this.getBottom() - other.getTop()) / delta;
} else if (this.getTop() <= other.getTop() && other.getTop() <= other.getBottom()
&& other.getBottom() <= this.getBottom()) {
rv = (other.getBottom() - other.getTop()) / delta;
} else if (other.getTop() <= this.getTop() && this.getTop() <= this.getBottom()
&& this.getBottom() <= other.getBottom()) {
rv = (this.getBottom() - this.getTop()) / delta;
}
public boolean horizontallyOverlaps(Rectangle other) {
return horizontalOverlap(other) > 0;
}
return rv;
public float verticalOverlapRatio(Rectangle other) {
float rv = 0, delta = Math.min(this.getBottom() - this.getTop(), other.getBottom() - other.getTop());
}
if (other.getTop() <= this.getTop() && this.getTop() <= other.getBottom()
&& other.getBottom() <= this.getBottom()) {
rv = (other.getBottom() - this.getTop()) / delta;
} else if (this.getTop() <= other.getTop() && other.getTop() <= this.getBottom()
&& this.getBottom() <= other.getBottom()) {
rv = (this.getBottom() - other.getTop()) / delta;
} else if (this.getTop() <= other.getTop() && other.getTop() <= other.getBottom()
&& other.getBottom() <= this.getBottom()) {
rv = (other.getBottom() - other.getTop()) / delta;
} else if (other.getTop() <= this.getTop() && this.getTop() <= this.getBottom()
&& this.getBottom() <= other.getBottom()) {
rv = (this.getBottom() - this.getTop()) / delta;
}
public float overlapRatio(Rectangle other) {
double intersectionWidth = Math.max(0,
Math.min(this.getRight(), other.getRight()) - Math.max(this.getLeft(), other.getLeft()));
double intersectionHeight = Math.max(0,
Math.min(this.getBottom(), other.getBottom()) - Math.max(this.getTop(), other.getTop()));
double intersectionArea = Math.max(0, intersectionWidth * intersectionHeight);
double unionArea = this.getArea() + other.getArea() - intersectionArea;
return rv;
return (float) (intersectionArea / unionArea);
}
}
public Rectangle merge(Rectangle other) {
this.setRect(this.createUnion(other));
return this;
}
public float overlapRatio(Rectangle other) {
double intersectionWidth = Math.max(0,
Math.min(this.getRight(), other.getRight()) - Math.max(this.getLeft(), other.getLeft()));
double intersectionHeight = Math.max(0,
Math.min(this.getBottom(), other.getBottom()) - Math.max(this.getTop(), other.getTop()));
double intersectionArea = Math.max(0, intersectionWidth * intersectionHeight);
double unionArea = this.getArea() + other.getArea() - intersectionArea;
public float getTop() {
return (float) this.getMinY();
}
return (float) (intersectionArea / unionArea);
}
public void setTop(float top) {
float deltaHeight = top - this.y;
this.setRect(this.x, top, this.width, this.height - deltaHeight);
}
public Rectangle merge(Rectangle other) {
this.setRect(this.createUnion(other));
return this;
}
public float getRight() {
return (float) this.getMaxX();
}
public float getTop() {
return (float) this.getMinY();
}
public void setRight(float right) {
this.setRect(this.x, this.y, right - this.x, this.height);
}
public void setTop(float top) {
float deltaHeight = top - this.y;
this.setRect(this.x, top, this.width, this.height - deltaHeight);
}
public float getLeft() {
return (float) this.getMinX();
}
public float getRight() {
return (float) this.getMaxX();
}
public void setLeft(float left) {
float deltaWidth = left - this.x;
this.setRect(left, this.y, this.width - deltaWidth, this.height);
}
public void setRight(float right) {
this.setRect(this.x, this.y, right - this.x, this.height);
}
public float getBottom() {
return (float) this.getMaxY();
}
public float getLeft() {
return (float) this.getMinX();
}
public void setBottom(float bottom) {
this.setRect(this.x, this.y, this.width, bottom - this.y);
}
public void setLeft(float left) {
float deltaWidth = left - this.x;
this.setRect(left, this.y, this.width - deltaWidth, this.height);
}
public Point2D[] getPoints() {
return new Point2D[] { new Point2D.Float(this.getLeft(), this.getTop()),
new Point2D.Float(this.getRight(), this.getTop()), new Point2D.Float(this.getRight(), this.getBottom()),
new Point2D.Float(this.getLeft(), this.getBottom()) };
}
public float getBottom() {
return (float) this.getMaxY();
}
@Override
public String toString() {
StringBuilder sb = new StringBuilder();
String s = super.toString();
sb.append(s.substring(0, s.length() - 1));
sb.append(String.format(",bottom=%f,right=%f]", this.getBottom(), this.getRight()));
return sb.toString();
}
public void setBottom(float bottom) {
this.setRect(this.x, this.y, this.width, bottom - this.y);
}
/**
* @param rectangles
* @return minimum bounding box that contains all the rectangles
*/
public static Rectangle boundingBoxOf(List<? extends Rectangle> rectangles) {
float minx = java.lang.Float.MAX_VALUE;
float miny = java.lang.Float.MAX_VALUE;
float maxx = java.lang.Float.MIN_VALUE;
float maxy = java.lang.Float.MIN_VALUE;
public Point2D[] getPoints() {
return new Point2D[]{new Point2D.Float(this.getLeft(), this.getTop()),
new Point2D.Float(this.getRight(), this.getTop()), new Point2D.Float(this.getRight(), this.getBottom()),
new Point2D.Float(this.getLeft(), this.getBottom())};
}
for (Rectangle r : rectangles) {
minx = (float) Math.min(r.getMinX(), minx);
miny = (float) Math.min(r.getMinY(), miny);
maxx = (float) Math.max(r.getMaxX(), maxx);
maxy = (float) Math.max(r.getMaxY(), maxy);
}
return new Rectangle(miny, minx, maxx - minx, maxy - miny);
}
@Override
public String toString() {
StringBuilder sb = new StringBuilder();
String s = super.toString();
sb.append(s.substring(0, s.length() - 1));
sb.append(String.format(",bottom=%f,right=%f]", this.getBottom(), this.getRight()));
return sb.toString();
}
}
@@ -1,12 +1,11 @@
package com.iqser.red.service.redaction.v1.server.tableextraction.model;
import java.util.ArrayList;
import java.util.List;
import com.iqser.red.service.redaction.v1.server.tableextraction.utils.Utils;
import org.locationtech.jts.geom.Envelope;
import org.locationtech.jts.index.strtree.STRtree;
import com.iqser.red.service.redaction.v1.server.tableextraction.utils.Utils;
import java.util.ArrayList;
import java.util.List;
@SuppressWarnings("all")
public class RectangleSpatialIndex<T extends Rectangle> {
@@ -1,20 +1,13 @@
package com.iqser.red.service.redaction.v1.server.tableextraction.model;
import com.iqser.red.service.redaction.v1.server.tableextraction.utils.CohenSutherlandClipping;
import com.iqser.red.service.redaction.v1.server.tableextraction.utils.Utils;
import lombok.extern.slf4j.Slf4j;
import java.awt.geom.Line2D;
import java.awt.geom.Point2D;
import java.awt.geom.Rectangle2D;
import java.util.ArrayList;
import java.util.Collections;
import java.util.Comparator;
import java.util.Formatter;
import java.util.List;
import java.util.Map;
import java.util.TreeMap;
import com.iqser.red.service.redaction.v1.server.tableextraction.utils.CohenSutherlandClipping;
import com.iqser.red.service.redaction.v1.server.tableextraction.utils.Utils;
import lombok.extern.slf4j.Slf4j;
import java.util.*;
@Slf4j
@@ -23,13 +16,127 @@ public class Ruling extends Line2D.Float {
private static int PERPENDICULAR_PIXEL_EXPAND_AMOUNT = 2;
private enum SOType {VERTICAL, HRIGHT, HLEFT}
public Ruling(Point2D p1, Point2D p2) {
super(p1, p2);
}
public static List<Ruling> cropRulingsToArea(List<Ruling> rulings, Rectangle2D area) {
ArrayList<Ruling> rv = new ArrayList<>();
for (Ruling r : rulings) {
if (r.intersects(area)) {
rv.add(r.intersect(area));
}
}
return rv;
}
// log(n) implementation of find_intersections
// based on http://people.csail.mit.edu/indyk/6.838-old/handouts/lec2.pdf
public static Map<Point2D, Ruling[]> findIntersections(List<Ruling> horizontals, List<Ruling> verticals) {
class SortObject {
protected SOType type;
protected float position;
protected Ruling ruling;
public SortObject(SOType type, float position, Ruling ruling) {
this.type = type;
this.position = position;
this.ruling = ruling;
}
}
List<SortObject> sos = new ArrayList<>();
TreeMap<Ruling, Boolean> tree = new TreeMap<>(new Comparator<Ruling>() {
@Override
public int compare(Ruling o1, Ruling o2) {
return java.lang.Double.compare(o1.getTop(), o2.getTop());
}
});
TreeMap<Point2D, Ruling[]> rv = new TreeMap<>(new Comparator<Point2D>() {
@Override
public int compare(Point2D o1, Point2D o2) {
if (o1.getY() > o2.getY()) {
return 1;
}
if (o1.getY() < o2.getY()) {
return -1;
}
if (o1.getX() > o2.getX()) {
return 1;
}
if (o1.getX() < o2.getX()) {
return -1;
}
return 0;
}
});
for (Ruling h : horizontals) {
sos.add(new SortObject(SOType.HLEFT, h.getLeft() - PERPENDICULAR_PIXEL_EXPAND_AMOUNT, h));
sos.add(new SortObject(SOType.HRIGHT, h.getRight() + PERPENDICULAR_PIXEL_EXPAND_AMOUNT, h));
}
for (Ruling v : verticals) {
sos.add(new SortObject(SOType.VERTICAL, v.getLeft(), v));
}
Collections.sort(sos, new Comparator<SortObject>() {
@Override
public int compare(SortObject a, SortObject b) {
int rv;
if (Utils.feq(a.position, b.position)) {
if (a.type == SOType.VERTICAL && b.type == SOType.HLEFT) {
rv = 1;
} else if (a.type == SOType.VERTICAL && b.type == SOType.HRIGHT) {
rv = -1;
} else if (a.type == SOType.HLEFT && b.type == SOType.VERTICAL) {
rv = -1;
} else if (a.type == SOType.HRIGHT && b.type == SOType.VERTICAL) {
rv = 1;
} else {
rv = java.lang.Double.compare(a.position, b.position);
}
} else {
return java.lang.Double.compare(a.position, b.position);
}
return rv;
}
});
for (SortObject so : sos) {
switch (so.type) {
case VERTICAL:
for (Map.Entry<Ruling, Boolean> h : tree.entrySet()) {
try {
Point2D i = h.getKey().intersectionPoint(so.ruling);
if (i == null) {
continue;
}
rv.put(i,
new Ruling[]{h.getKey().expand(PERPENDICULAR_PIXEL_EXPAND_AMOUNT),
so.ruling.expand(PERPENDICULAR_PIXEL_EXPAND_AMOUNT)});
} catch (UnsupportedOperationException e) {
log.info("Some line are oblique, ignoring...");
continue;
}
}
break;
case HRIGHT:
tree.remove(so.ruling);
break;
case HLEFT:
tree.put(so.ruling, true);
break;
}
}
return rv;
}
public boolean vertical() {
return this.length() > 0 && Utils.feq(this.x1, this.x2); //diff < ORIENTATION_CHECK_THRESHOLD;
}
@@ -38,13 +145,13 @@ public class Ruling extends Line2D.Float {
return this.length() > 0 && Utils.feq(this.y1, this.y2); //diff < ORIENTATION_CHECK_THRESHOLD;
}
// attributes that make sense only for non-oblique lines
// these are used to have a single collapse method (in page, currently)
public boolean oblique() {
return !(this.vertical() || this.horizontal());
}
// attributes that make sense only for non-oblique lines
// these are used to have a single collapse method (in page, currently)
public float getPosition() {
if (this.oblique()) {
throw new UnsupportedOperationException();
@@ -52,7 +159,6 @@ public class Ruling extends Line2D.Float {
return this.vertical() ? this.getLeft() : this.getTop();
}
public float getStart() {
if (this.oblique()) {
throw new UnsupportedOperationException();
@@ -102,12 +208,10 @@ public class Ruling extends Line2D.Float {
}
}
public boolean perpendicularTo(Ruling other) {
return this.vertical() == other.horizontal();
}
public boolean nearlyIntersects(Ruling another, int colinearOrParallelExpandAmount) {
if (this.intersectsLine(another)) {
return true;
@@ -238,7 +342,6 @@ public class Ruling extends Line2D.Float {
return angle;
}
@Override
public String toString() {
StringBuilder sb = new StringBuilder();
@@ -248,122 +351,7 @@ public class Ruling extends Line2D.Float {
return rv;
}
public static List<Ruling> cropRulingsToArea(List<Ruling> rulings, Rectangle2D area) {
ArrayList<Ruling> rv = new ArrayList<>();
for (Ruling r : rulings) {
if (r.intersects(area)) {
rv.add(r.intersect(area));
}
}
return rv;
}
// log(n) implementation of find_intersections
// based on http://people.csail.mit.edu/indyk/6.838-old/handouts/lec2.pdf
public static Map<Point2D, Ruling[]> findIntersections(List<Ruling> horizontals, List<Ruling> verticals) {
class SortObject {
protected SOType type;
protected float position;
protected Ruling ruling;
public SortObject(SOType type, float position, Ruling ruling) {
this.type = type;
this.position = position;
this.ruling = ruling;
}
}
List<SortObject> sos = new ArrayList<>();
TreeMap<Ruling, Boolean> tree = new TreeMap<>(new Comparator<Ruling>() {
@Override
public int compare(Ruling o1, Ruling o2) {
return java.lang.Double.compare(o1.getTop(), o2.getTop());
}
});
TreeMap<Point2D, Ruling[]> rv = new TreeMap<>(new Comparator<Point2D>() {
@Override
public int compare(Point2D o1, Point2D o2) {
if (o1.getY() > o2.getY()) {
return 1;
}
if (o1.getY() < o2.getY()) {
return -1;
}
if (o1.getX() > o2.getX()) {
return 1;
}
if (o1.getX() < o2.getX()) {
return -1;
}
return 0;
}
});
for (Ruling h : horizontals) {
sos.add(new SortObject(SOType.HLEFT, h.getLeft() - PERPENDICULAR_PIXEL_EXPAND_AMOUNT, h));
sos.add(new SortObject(SOType.HRIGHT, h.getRight() + PERPENDICULAR_PIXEL_EXPAND_AMOUNT, h));
}
for (Ruling v : verticals) {
sos.add(new SortObject(SOType.VERTICAL, v.getLeft(), v));
}
Collections.sort(sos, new Comparator<SortObject>() {
@Override
public int compare(SortObject a, SortObject b) {
int rv;
if (Utils.feq(a.position, b.position)) {
if (a.type == SOType.VERTICAL && b.type == SOType.HLEFT) {
rv = 1;
} else if (a.type == SOType.VERTICAL && b.type == SOType.HRIGHT) {
rv = -1;
} else if (a.type == SOType.HLEFT && b.type == SOType.VERTICAL) {
rv = -1;
} else if (a.type == SOType.HRIGHT && b.type == SOType.VERTICAL) {
rv = 1;
} else {
rv = java.lang.Double.compare(a.position, b.position);
}
} else {
return java.lang.Double.compare(a.position, b.position);
}
return rv;
}
});
for (SortObject so : sos) {
switch (so.type) {
case VERTICAL:
for (Map.Entry<Ruling, Boolean> h : tree.entrySet()) {
try {
Point2D i = h.getKey().intersectionPoint(so.ruling);
if (i == null) {
continue;
}
rv.put(i,
new Ruling[]{h.getKey().expand(PERPENDICULAR_PIXEL_EXPAND_AMOUNT),
so.ruling.expand(PERPENDICULAR_PIXEL_EXPAND_AMOUNT)});
} catch(UnsupportedOperationException e){
log.info("Some line are oblique, ignoring...");
continue;
}
}
break;
case HRIGHT:
tree.remove(so.ruling);
break;
case HLEFT:
tree.put(so.ruling, true);
break;
}
}
return rv;
}
private enum SOType {VERTICAL, HRIGHT, HLEFT}
}
@@ -1,22 +1,13 @@
package com.iqser.red.service.redaction.v1.server.tableextraction.model;
import java.util.ArrayList;
import java.util.Collections;
import java.util.Comparator;
import java.util.HashMap;
import java.util.Iterator;
import java.util.List;
import java.util.Map;
import java.util.TreeMap;
import org.apache.commons.collections4.CollectionUtils;
import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
import com.iqser.red.service.redaction.v1.server.tableextraction.utils.Utils;
import lombok.Getter;
import lombok.Setter;
import lombok.extern.slf4j.Slf4j;
import org.apache.commons.collections4.CollectionUtils;
import java.util.*;
@Slf4j
public class Table extends AbstractTextContainer {
@@ -24,21 +15,14 @@ public class Table extends AbstractTextContainer {
private final TreeMap<CellPosition, Cell> cells = new TreeMap<>();
private final RectangleSpatialIndex<Cell> si = new RectangleSpatialIndex<>();
private final int rotation;
@Getter
@Setter
private String headline;
private int unrotatedRowCount;
private int unrotatedColCount;
private int rowCount = -1;
private int colCount = -1;
private final int rotation;
private List<List<Cell>> rows;
@@ -59,6 +43,16 @@ public class Table extends AbstractTextContainer {
if (rows == null) {
rows = computeRows();
// Ignore rows that does not contain any cells and values.
List<List<Cell>> rowsToRemove = new ArrayList<>();
for (List<Cell> row : rows) {
if (row.size() == 1 && row.get(0).getTextBlocks().isEmpty()) {
rowsToRemove.add(row);
}
}
rows.removeAll(rowsToRemove);
computeHeaders();
}
@@ -100,6 +94,10 @@ public class Table extends AbstractTextContainer {
// we move from left to right and top to bottom
for (int rowIndex = 0; rowIndex < rows.size(); rowIndex++) {
List<Cell> rowCells = rows.get(rowIndex);
if (rowCells.size() == 1) {
continue;
}
for (int colIndex = 0; colIndex < rowCells.size(); colIndex++) {
Cell cell = rowCells.get(colIndex);
List<Cell> cellsToTheLeft = rowCells.subList(0, colIndex);
@@ -261,7 +259,7 @@ public class Table extends AbstractTextContainer {
cells.sort(Collections.reverseOrder((arg0, arg1) -> Float.compare(Utils.round(arg0.getBottom(), 2),
Utils.round(arg1
.getBottom(), 2))));
.getBottom(), 2))));
Iterator<Cell> iter = cells.iterator();
Cell c = iter.next();
@@ -353,4 +351,4 @@ public class Table extends AbstractTextContainer {
return sb.toString();
}
}
}
@@ -1,26 +1,21 @@
package com.iqser.red.service.redaction.v1.server.tableextraction.service;
import java.awt.geom.Line2D;
import java.awt.geom.Point2D;
import java.util.ArrayList;
import java.util.Collections;
import java.util.Comparator;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import org.springframework.stereotype.Service;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.CleanRulings;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Ruling;
import com.iqser.red.service.redaction.v1.server.tableextraction.utils.Utils;
import org.springframework.stereotype.Service;
import java.awt.geom.Line2D;
import java.awt.geom.Point2D;
import java.util.*;
@Service
public class RulingCleaningService {
public CleanRulings getCleanRulings(List<Ruling> rulings, float maxCharWidth, float maxCharHeight){
public CleanRulings getCleanRulings(List<Ruling> rulings, float minCharWidth, float maxCharHeight) {
if (!rulings.isEmpty()) {
snapPoints(rulings, maxCharWidth , maxCharHeight);
snapPoints(rulings, minCharWidth, maxCharHeight);
}
List<Ruling> vrs = new ArrayList<>();
@@ -39,13 +34,10 @@ public class RulingCleaningService {
}
List<Ruling> horizontalRulingLines = collapseOrientedRulings(hrs);
return CleanRulings
.builder()
.vertical(verticalRulingLines)
.horizontal(horizontalRulingLines)
.build();
return CleanRulings.builder().vertical(verticalRulingLines).horizontal(horizontalRulingLines).build();
}
public void snapPoints(List<? extends Line2D.Float> rulings, float xThreshold, float yThreshold) {
// collect points and keep a Line -> p1,p2 map
@@ -122,12 +114,14 @@ public class RulingCleaningService {
private List<Ruling> collapseOrientedRulings(List<Ruling> lines) {
int COLINEAR_OR_PARALLEL_PIXEL_EXPAND_AMOUNT = 1;
return collapseOrientedRulings(lines, COLINEAR_OR_PARALLEL_PIXEL_EXPAND_AMOUNT);
}
private List<Ruling> collapseOrientedRulings(List<Ruling> lines, int expandAmount) {
ArrayList<Ruling> rv = new ArrayList<>();
lines.sort((a, b) -> {
final float diff = a.getPosition() - b.getPosition();
@@ -141,25 +135,24 @@ public class RulingCleaningService {
final float lastStart = last.getStart();
final float lastEnd = last.getEnd();
final boolean lastFlipped = lastStart > lastEnd;
final boolean lastFlipped = lastStart > lastEnd;
final boolean nextFlipped = next_line.getStart() > next_line.getEnd();
boolean differentDirections = nextFlipped != lastFlipped;
float nextS = differentDirections ? next_line.getEnd() : next_line.getStart();
float nextS = differentDirections ? next_line.getEnd() : next_line.getStart();
float nextE = differentDirections ? next_line.getStart() : next_line.getEnd();
final float newStart = lastFlipped ? Math.max(nextS, lastStart) : Math.min(nextS, lastStart);
final float newEnd = lastFlipped ? Math.min(nextE, lastEnd) : Math.max(nextE, lastEnd);
final float newEnd = lastFlipped ? Math.min(nextE, lastEnd) : Math.max(nextE, lastEnd);
last.setStartEnd(newStart, newEnd);
assert !last.oblique();
}
else if (next_line.length() == 0) {
} else if (next_line.length() == 0) {
continue;
}
else {
} else {
rv.add(next_line);
}
}
return rv;
}
}
@@ -1,31 +1,57 @@
package com.iqser.red.service.redaction.v1.server.tableextraction.service;
import java.awt.geom.Point2D;
import java.util.ArrayList;
import java.util.Comparator;
import java.util.HashMap;
import java.util.HashSet;
import java.util.Iterator;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.stream.Collectors;
import org.springframework.stereotype.Service;
import com.iqser.red.service.redaction.v1.server.classification.model.Page;
import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Cell;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.CleanRulings;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Rectangle;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Ruling;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
import com.iqser.red.service.redaction.v1.server.tableextraction.model.*;
import com.iqser.red.service.redaction.v1.server.tableextraction.utils.Utils;
import org.springframework.stereotype.Service;
import java.awt.geom.Point2D;
import java.util.*;
import java.util.stream.Collectors;
@Service
public class TableExtractionService {
private static final Comparator<Point2D> X_FIRST_POINT_COMPARATOR = (arg0, arg1) -> {
int rv = 0;
float arg0X = Utils.round(arg0.getX(), 2);
float arg0Y = Utils.round(arg0.getY(), 2);
float arg1X = Utils.round(arg1.getX(), 2);
float arg1Y = Utils.round(arg1.getY(), 2);
if (arg0X > arg1X) {
rv = 1;
} else if (arg0X < arg1X) {
rv = -1;
} else if (arg0Y > arg1Y) {
rv = 1;
} else if (arg0Y < arg1Y) {
rv = -1;
}
return rv;
};
private static final Comparator<Point2D> POINT_COMPARATOR = (arg0, arg1) -> {
int rv = 0;
float arg0X = Utils.round(arg0.getX(), 2);
float arg0Y = Utils.round(arg0.getY(), 2);
float arg1X = Utils.round(arg1.getX(), 2);
float arg1Y = Utils.round(arg1.getY(), 2);
if (arg0Y > arg1Y) {
rv = 1;
} else if (arg0Y < arg1Y) {
rv = -1;
} else if (arg0X > arg1X) {
rv = 1;
} else if (arg0X < arg1X) {
rv = -1;
}
return rv;
};
public void extractTables(CleanRulings cleanRulings, Page page) {
List<Cell> cells = findCells(cleanRulings.getHorizontal(), cleanRulings.getVertical());
@@ -80,7 +106,6 @@ public class TableExtractionService {
page.getTextBlocks().removeAll(toBeRemoved);
}
public List<Cell> findCells(List<Ruling> horizontalRulingLines, List<Ruling> verticalRulingLines) {
List<Cell> cellsFound = new ArrayList<>();
@@ -133,7 +158,6 @@ public class TableExtractionService {
return cellsFound;
}
private List<Rectangle> findSpreadsheetsFromCells(List<? extends Rectangle> cells) {
// via: http://stackoverflow.com/questions/13746284/merging-multiple-adjacent-rectangles-into-one-polygon
List<Rectangle> rectangles = new ArrayList<>();
@@ -233,47 +257,6 @@ public class TableExtractionService {
return rectangles;
}
private static final Comparator<Point2D> X_FIRST_POINT_COMPARATOR = (arg0, arg1) -> {
int rv = 0;
float arg0X = Utils.round(arg0.getX(), 2);
float arg0Y = Utils.round(arg0.getY(), 2);
float arg1X = Utils.round(arg1.getX(), 2);
float arg1Y = Utils.round(arg1.getY(), 2);
if (arg0X > arg1X) {
rv = 1;
} else if (arg0X < arg1X) {
rv = -1;
} else if (arg0Y > arg1Y) {
rv = 1;
} else if (arg0Y < arg1Y) {
rv = -1;
}
return rv;
};
private static final Comparator<Point2D> POINT_COMPARATOR = (arg0, arg1) -> {
int rv = 0;
float arg0X = Utils.round(arg0.getX(), 2);
float arg0Y = Utils.round(arg0.getY(), 2);
float arg1X = Utils.round(arg1.getX(), 2);
float arg1Y = Utils.round(arg1.getY(), 2);
if (arg0Y > arg1Y) {
rv = 1;
} else if (arg0Y < arg1Y) {
rv = -1;
} else if (arg0X > arg1X) {
rv = 1;
} else if (arg0X < arg1X) {
rv = -1;
}
return rv;
};
private enum Direction {
HORIZONTAL, VERTICAL
}
@@ -19,21 +19,24 @@ import java.awt.geom.Rectangle2D;
* clipping algorithm (line against clip rectangle).
*/
@SuppressWarnings("all")
public final class CohenSutherlandClipping
{
public final class CohenSutherlandClipping {
private static final int INSIDE = 0;
private static final int LEFT = 1;
private static final int RIGHT = 2;
private static final int BOTTOM = 4;
private static final int TOP = 8;
private double xMin;
private double yMin;
private double xMax;
private double yMax;
/**
* Creates a Cohen Sutherland clipper with clip rect (0, 0, 0, 0).
*/
public CohenSutherlandClipping() {
}
/**
* Creates a Cohen Sutherland clipper with the given clip rectangle.
*
* @param clip the clip rectangle to use
*/
public CohenSutherlandClipping(Rectangle2D clip) {
@@ -42,6 +45,7 @@ public final class CohenSutherlandClipping
/**
* Sets the clip rectangle.
*
* @param clip the clip rectangle
*/
public void setClip(Rectangle2D clip) {
@@ -51,19 +55,13 @@ public final class CohenSutherlandClipping
yMax = yMin + clip.getHeight();
}
private static final int INSIDE = 0;
private static final int LEFT = 1;
private static final int RIGHT = 2;
private static final int BOTTOM = 4;
private static final int TOP = 8;
private final int regionCode(double x, double y) {
int code = x < xMin
? LEFT
: x > xMax
int code = x < xMin
? LEFT
: x > xMax
? RIGHT
: INSIDE;
if (y < yMin) code |= BOTTOM;
if (y < yMin) code |= BOTTOM;
else if (y > yMax) code |= TOP;
return code;
}
@@ -71,6 +69,7 @@ public final class CohenSutherlandClipping
/**
* Clips a given line against the clip rectangle.
* The modification (if needed) is done in place.
*
* @param line the line to clip
* @return true if line is clipped, false if line is
* totally outside the clip rect.
@@ -87,9 +86,9 @@ public final class CohenSutherlandClipping
boolean vertical = p1x == p2x;
double slope = vertical
? 0d
: (p2y-p1y)/(p2x-p1x);
double slope = vertical
? 0d
: (p2y - p1y) / (p2x - p1x);
int c1 = regionCode(p1x, p1y);
int c2 = regionCode(p2x, p2y);
@@ -103,31 +102,27 @@ public final class CohenSutherlandClipping
if ((c & LEFT) != INSIDE) {
qx = xMin;
qy = (Utils.feq(qx, p1x) ? 0 : qx-p1x)*slope + p1y;
}
else if ((c & RIGHT) != INSIDE) {
qy = (Utils.feq(qx, p1x) ? 0 : qx - p1x) * slope + p1y;
} else if ((c & RIGHT) != INSIDE) {
qx = xMax;
qy = (Utils.feq(qx, p1x) ? 0 : qx-p1x)*slope + p1y;
}
else if ((c & BOTTOM) != INSIDE) {
qy = (Utils.feq(qx, p1x) ? 0 : qx - p1x) * slope + p1y;
} else if ((c & BOTTOM) != INSIDE) {
qy = yMin;
qx = vertical
? p1x
: (Utils.feq(qy, p1y) ? 0 : qy-p1y)/slope + p1x;
}
else if ((c & TOP) != INSIDE) {
? p1x
: (Utils.feq(qy, p1y) ? 0 : qy - p1y) / slope + p1x;
} else if ((c & TOP) != INSIDE) {
qy = yMax;
qx = vertical
? p1x
: (Utils.feq(qy, p1y) ? 0 : qy-p1y)/slope + p1x;
? p1x
: (Utils.feq(qy, p1y) ? 0 : qy - p1y) / slope + p1x;
}
if (c == c1) {
p1x = qx;
p1y = qy;
c1 = regionCode(p1x, p1y);
}
else {
c1 = regionCode(p1x, p1y);
} else {
p2x = qx;
p2y = qy;
c2 = regionCode(p2x, p2y);
@@ -137,4 +132,4 @@ public final class CohenSutherlandClipping
return true;
}
}
// end of file
// end of file
@@ -10,11 +10,6 @@ import java.util.List;
*/
public final class QuickSort {
private QuickSort() {
}
private static final Comparator<? extends Comparable> OBJCOMP = new Comparator<Comparable>() {
@Override
public int compare(Comparable object1, Comparable object2) {
@@ -24,6 +19,10 @@ public final class QuickSort {
};
private QuickSort() {
}
/**
* Sorts the given list using the given comparator.
*

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