Compare commits
15
Commits
| Author | SHA1 | Date | |
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ad62a0666f | ||
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5aba4b69ba | ||
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c2fd749fec | ||
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e8256c49dc | ||
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62351c8d16 | ||
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599c7bd6e4 | ||
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22f609a93a | ||
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609018a051 | ||
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dedd169031 | ||
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704e6a4b5a | ||
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eeda6fd207 | ||
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0bc5abb29d | ||
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53cb9718b6 | ||
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79b57e85cd | ||
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b173975ff5 |
@@ -32,7 +32,7 @@
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<dependency>
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<groupId>com.iqser.red</groupId>
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<artifactId>platform-commons-dependency</artifactId>
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<version>1.1.0</version>
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<version>1.1.7</version>
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<scope>import</scope>
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<type>pom</type>
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</dependency>
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+1
@@ -12,6 +12,7 @@ import lombok.NoArgsConstructor;
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public class RedactionRequest {
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private byte[] document;
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private String ruleSetId;
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private boolean flatRedaction;
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private ManualRedactions manualRedactions;
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}
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@@ -20,7 +20,7 @@
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<dependency>
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<groupId>com.iqser.red.service</groupId>
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<artifactId>configuration-service-api-v1</artifactId>
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<version>1.3.7</version>
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<version>2.0.0</version>
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</dependency>
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<dependency>
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<groupId>org.drools</groupId>
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+3
-48
@@ -1,16 +1,8 @@
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package com.iqser.red.service.redaction.v1.server;
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import java.io.ByteArrayInputStream;
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import java.io.InputStream;
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import java.nio.charset.StandardCharsets;
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import org.apache.commons.lang3.StringUtils;
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import org.kie.api.KieServices;
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import org.kie.api.builder.KieBuilder;
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import org.kie.api.builder.KieFileSystem;
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import org.kie.api.builder.KieModule;
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import org.kie.api.runtime.KieContainer;
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import org.springframework.beans.factory.annotation.Autowired;
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import com.iqser.red.commons.spring.DefaultWebMvcConfiguration;
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import com.iqser.red.service.redaction.v1.server.client.RulesClient;
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import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
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import org.springframework.boot.SpringApplication;
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import org.springframework.boot.actuate.autoconfigure.metrics.web.servlet.WebMvcMetricsAutoConfiguration;
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import org.springframework.boot.actuate.autoconfigure.security.servlet.ManagementWebSecurityAutoConfiguration;
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@@ -18,54 +10,17 @@ import org.springframework.boot.autoconfigure.SpringBootApplication;
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import org.springframework.boot.autoconfigure.security.servlet.SecurityAutoConfiguration;
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import org.springframework.boot.context.properties.EnableConfigurationProperties;
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import org.springframework.cloud.openfeign.EnableFeignClients;
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import org.springframework.context.annotation.Bean;
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import org.springframework.context.annotation.Import;
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import com.iqser.red.commons.spring.DefaultWebMvcConfiguration;
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import com.iqser.red.service.configuration.v1.api.model.RulesResponse;
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import com.iqser.red.service.redaction.v1.server.client.RulesClient;
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import com.iqser.red.service.redaction.v1.server.exception.RulesValidationException;
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import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
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@Import({DefaultWebMvcConfiguration.class})
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@EnableFeignClients(basePackageClasses = RulesClient.class)
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@EnableConfigurationProperties(RedactionServiceSettings.class)
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@SpringBootApplication(exclude = {SecurityAutoConfiguration.class, ManagementWebSecurityAutoConfiguration.class, WebMvcMetricsAutoConfiguration.class})
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public class Application {
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@Autowired
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private RulesClient rulesClient;
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public static void main(String[] args) {
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SpringApplication.run(Application.class, args);
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}
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@Bean
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public KieContainer kieContainer() {
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try {
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KieServices kieServices = KieServices.Factory.get();
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KieFileSystem kieFileSystem = kieServices.newKieFileSystem();
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RulesResponse rules = rulesClient.getRules();
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if (StringUtils.isEmpty(rules.getRules())) {
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throw new RuntimeException("Rules cannot be empty.");
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}
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InputStream input = new ByteArrayInputStream(rules.getRules().getBytes(StandardCharsets.UTF_8));
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kieFileSystem.write("src/main/resources/drools/rules.drl", kieServices.getResources()
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.newInputStreamResource(input));
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KieBuilder kieBuilder = kieServices.newKieBuilder(kieFileSystem);
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kieBuilder.buildAll();
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KieModule kieModule = kieBuilder.getKieModule();
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return kieServices.newKieContainer(kieModule.getReleaseId());
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} catch (Exception e) {
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throw new RulesValidationException("Could not update rules: " + e.getMessage(), e);
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}
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}
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}
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+11
-13
@@ -1,14 +1,5 @@
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package com.iqser.red.service.redaction.v1.server.controller;
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import java.io.ByteArrayInputStream;
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import java.io.ByteArrayOutputStream;
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import java.io.IOException;
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import java.util.List;
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import org.apache.pdfbox.pdmodel.PDDocument;
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import org.springframework.web.bind.annotation.RequestBody;
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import org.springframework.web.bind.annotation.RestController;
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import com.iqser.red.service.redaction.v1.model.RedactionLog;
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import com.iqser.red.service.redaction.v1.model.RedactionLogEntry;
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import com.iqser.red.service.redaction.v1.model.RedactionRequest;
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@@ -25,9 +16,16 @@ import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractT
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import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
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import com.iqser.red.service.redaction.v1.server.visualization.service.AnnotationHighlightService;
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import com.iqser.red.service.redaction.v1.server.visualization.service.PdfVisualisationService;
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import lombok.RequiredArgsConstructor;
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import lombok.extern.slf4j.Slf4j;
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import org.apache.pdfbox.pdmodel.PDDocument;
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import org.springframework.web.bind.annotation.RequestBody;
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import org.springframework.web.bind.annotation.RestController;
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import java.io.ByteArrayInputStream;
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import java.io.ByteArrayOutputStream;
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import java.io.IOException;
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import java.util.List;
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@Slf4j
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@RestController
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@@ -51,9 +49,9 @@ public class RedactionController implements RedactionResource {
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log.info("Document structure analysis successful, starting redaction analysis...");
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entityRedactionService.processDocument(classifiedDoc, redactionRequest.getManualRedactions());
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entityRedactionService.processDocument(classifiedDoc, redactionRequest.getRuleSetId(), redactionRequest.getManualRedactions());
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annotationHighlightService.highlight(pdDocument, classifiedDoc, redactionRequest.isFlatRedaction(), redactionRequest
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.getManualRedactions());
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.getManualRedactions(), redactionRequest.getRuleSetId());
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log.info("Redaction analysis successful...");
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@@ -152,7 +150,7 @@ public class RedactionController implements RedactionResource {
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return RedactionResult.builder()
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.document(byteArrayOutputStream.toByteArray())
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.numberOfPages(numberOfPages)
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.redactionLog(new RedactionLog(redactionLogEntities,dictionaryVersion, rulesVersion))
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.redactionLog(new RedactionLog(redactionLogEntities, dictionaryVersion, rulesVersion))
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.sectionGrid(sectionGrid)
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.build();
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}
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+6
-7
@@ -212,7 +212,7 @@ public class PDFLinesTextStripper extends PDFTextStripper {
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maxCharWidths = charWidth;
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}
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if (i == 0 && textPositions.get(i).getUnicode().equals(" ")) {
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if (i == 0 && (textPositions.get(i).getUnicode().equals(" ") || textPositions.get(i).getUnicode().equals("\u00A0"))) {
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startIndex++;
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continue;
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}
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@@ -220,15 +220,15 @@ public class PDFLinesTextStripper extends PDFTextStripper {
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// Strange but sometimes this is happening, for example: Metolachlor2.pdf
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if (i > 0 && textPositions.get(i).getX() < textPositions.get(i - 1).getX()) {
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List<TextPosition> sublist = textPositions.subList(startIndex, i);
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if (!(sublist.isEmpty() || sublist.size() == 1 && sublist.get(0).getUnicode().equals(" "))) {
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if (!(sublist.isEmpty() || sublist.size() == 1 && (sublist.get(0).getUnicode().equals(" ") || sublist.get(0).getUnicode().equals("\u00A0")))) {
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textPositionSequences.add(new TextPositionSequence(sublist, pageNumber));
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}
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startIndex = i;
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}
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if (i > 0 && textPositions.get(i).getUnicode().equals(" ") && i <= textPositions.size() - 2) {
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if (i > 0 && (textPositions.get(i).getUnicode().equals(" ") || textPositions.get(i).getUnicode().equals("\u00A0")) && i <= textPositions.size() - 2) {
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List<TextPosition> sublist = textPositions.subList(startIndex, i);
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if (!(sublist.isEmpty() || sublist.size() == 1 && sublist.get(0).getUnicode().equals(" "))) {
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if (!(sublist.isEmpty() || sublist.size() == 1 && (sublist.get(0).getUnicode().equals(" ") || sublist.get(0).getUnicode().equals("\u00A0")))) {
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textPositionSequences.add(new TextPositionSequence(sublist, pageNumber));
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}
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startIndex = i + 1;
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@@ -236,14 +236,13 @@ public class PDFLinesTextStripper extends PDFTextStripper {
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}
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List<TextPosition> sublist = textPositions.subList(startIndex, textPositions.size());
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if (!sublist.isEmpty() && sublist.get(sublist.size() - 1).getUnicode().equals(" ")) {
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if (!sublist.isEmpty() && (sublist.get(sublist.size() - 1).getUnicode().equals(" ") || sublist.get(sublist.size() - 1).getUnicode().equals("\u00A0"))) {
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sublist = sublist.subList(0, sublist.size() - 1);
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}
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if (!(sublist.isEmpty() || sublist.size() == 1 && sublist.get(0).getUnicode().equals(" "))) {
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if (!(sublist.isEmpty() || sublist.size() == 1 && (sublist.get(0).getUnicode().equals(" ") || sublist.get(0).getUnicode().equals("\u00A0")))) {
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textPositionSequences.add(new TextPositionSequence(sublist, pageNumber));
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}
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super.writeString(text);
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}
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@Override
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+24
@@ -0,0 +1,24 @@
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package com.iqser.red.service.redaction.v1.server.redaction.model;
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import lombok.Data;
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import java.util.ArrayList;
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import java.util.HashMap;
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import java.util.List;
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import java.util.Map;
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@Data
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public class DictionaryRepresentation {
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private String ruleSetId;
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private long dictionaryVersion = -1;
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private List<DictionaryModel> dictionary = new ArrayList<>();
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private float[] defaultColor;
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private float[] requestAddColor;
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private float[] requestRemoveColor;
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private float[] notRedactedColor;
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private Map<String, DictionaryModel> localAccessMap = new HashMap<>();
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|
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}
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+18
-22
@@ -2,18 +2,20 @@ package com.iqser.red.service.redaction.v1.server.redaction.model;
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import static com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary.RECOMMENDATION_PREFIX;
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import java.util.ArrayList;
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import java.util.Collection;
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import java.util.HashMap;
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||||
import java.util.HashSet;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
import java.util.Set;
|
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import java.util.regex.Matcher;
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import java.util.regex.Pattern;
|
||||
import java.util.stream.Collectors;
|
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|
||||
import org.apache.commons.lang3.StringUtils;
|
||||
|
||||
import com.iqser.red.service.redaction.v1.server.classification.model.TextBlock;
|
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import com.iqser.red.service.redaction.v1.server.redaction.utils.Patterns;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.utils.PositionUtil;
|
||||
|
||||
import lombok.Builder;
|
||||
import lombok.Data;
|
||||
@@ -45,6 +47,10 @@ public class Section {
|
||||
|
||||
private Map<String, CellValue> tabularData;
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|
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private Dictionary dictionary;
|
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|
||||
private SearchableText searchableText;
|
||||
|
||||
|
||||
public boolean rowEquals(String headerName, String value) {
|
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|
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@@ -243,7 +249,7 @@ public class Section {
|
||||
}
|
||||
} while (startIndex > -1);
|
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|
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return removeEntitiesContainedInLarger(found);
|
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return PositionUtil.clearAndFindPositions(found, searchableText, dictionary);
|
||||
}
|
||||
|
||||
|
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@@ -253,22 +259,6 @@ public class Section {
|
||||
}
|
||||
|
||||
|
||||
public Set<Entity> removeEntitiesContainedInLarger(Set<Entity> entities) {
|
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|
||||
List<Entity> wordsToRemove = new ArrayList<>();
|
||||
for (Entity word : entities) {
|
||||
for (Entity inner : entities) {
|
||||
if (inner.getWord().length() < word.getWord()
|
||||
.length() && inner.getStart() >= word.getStart() && inner.getEnd() <= word.getEnd() && word != inner) {
|
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wordsToRemove.add(inner);
|
||||
}
|
||||
}
|
||||
}
|
||||
entities.removeAll(wordsToRemove);
|
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return entities;
|
||||
}
|
||||
|
||||
|
||||
public void highlightCell(String cellHeader, int ruleNumber, String type) {
|
||||
|
||||
annotateCell(cellHeader, ruleNumber, type, false, false, null, null);
|
||||
@@ -305,15 +295,21 @@ public class Section {
|
||||
entity.setMatchedRule(ruleNumber);
|
||||
entity.setRedactionReason(reason);
|
||||
entity.setTargetSequences(value.getTextBlocks()
|
||||
.get(0)
|
||||
.getSequences()); // Make sure no other cells with same content are highlighted
|
||||
.stream()
|
||||
.map(TextBlock::getSequences)
|
||||
.flatMap(Collection::stream)
|
||||
.collect(Collectors.toList())); // Make sure no other cells with same content are highlighted
|
||||
entity.setLegalBasis(legalBasis);
|
||||
|
||||
Set<Entity> singleEntitySet = new HashSet<>();
|
||||
singleEntitySet.add(entity);
|
||||
PositionUtil.clearAndFindPositions(singleEntitySet, searchableText, dictionary);
|
||||
|
||||
// HashSet keeps the older value, but we want the new only.
|
||||
entities.remove(entity);
|
||||
entities.add(entity);
|
||||
|
||||
entities = removeEntitiesContainedInLarger(entities);
|
||||
PositionUtil.removeEntitiesContainedInLarger(entities);
|
||||
|
||||
if (addAsRecommendations && !isLocal()) {
|
||||
String cleanedWord = word.replaceAll(",", " ").replaceAll(" ", " ").trim() + " ";
|
||||
|
||||
+69
-67
@@ -1,5 +1,19 @@
|
||||
package com.iqser.red.service.redaction.v1.server.redaction.service;
|
||||
|
||||
import com.iqser.red.service.configuration.v1.api.model.Colors;
|
||||
import com.iqser.red.service.configuration.v1.api.model.TypeResponse;
|
||||
import com.iqser.red.service.configuration.v1.api.model.TypeResult;
|
||||
import com.iqser.red.service.redaction.v1.server.client.DictionaryClient;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryModel;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryRepresentation;
|
||||
import feign.FeignException;
|
||||
import lombok.RequiredArgsConstructor;
|
||||
import lombok.extern.slf4j.Slf4j;
|
||||
import org.apache.commons.collections4.CollectionUtils;
|
||||
import org.apache.commons.lang3.SerializationUtils;
|
||||
import org.springframework.stereotype.Service;
|
||||
|
||||
import java.awt.Color;
|
||||
import java.util.ArrayList;
|
||||
import java.util.Comparator;
|
||||
@@ -10,22 +24,6 @@ import java.util.Map;
|
||||
import java.util.Set;
|
||||
import java.util.stream.Collectors;
|
||||
|
||||
import org.apache.commons.collections4.CollectionUtils;
|
||||
import org.apache.commons.lang3.SerializationUtils;
|
||||
import org.springframework.stereotype.Service;
|
||||
|
||||
import com.iqser.red.service.configuration.v1.api.model.Colors;
|
||||
import com.iqser.red.service.configuration.v1.api.model.TypeResponse;
|
||||
import com.iqser.red.service.configuration.v1.api.model.TypeResult;
|
||||
import com.iqser.red.service.redaction.v1.server.client.DictionaryClient;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.DictionaryModel;
|
||||
|
||||
import feign.FeignException;
|
||||
import lombok.Getter;
|
||||
import lombok.RequiredArgsConstructor;
|
||||
import lombok.extern.slf4j.Slf4j;
|
||||
|
||||
@Slf4j
|
||||
@Service
|
||||
@RequiredArgsConstructor
|
||||
@@ -34,60 +32,51 @@ public class DictionaryService {
|
||||
|
||||
private final DictionaryClient dictionaryClient;
|
||||
|
||||
@Getter
|
||||
private long dictionaryVersion = -1;
|
||||
|
||||
@Getter
|
||||
private List<DictionaryModel> dictionary = new ArrayList<>();
|
||||
|
||||
@Getter
|
||||
private float[] defaultColor;
|
||||
|
||||
@Getter
|
||||
private float[] requestAddColor;
|
||||
|
||||
@Getter
|
||||
private float[] requestRemoveColor;
|
||||
|
||||
@Getter
|
||||
private float[] notRedactedColor;
|
||||
private Map<String, DictionaryRepresentation> dictionariesByRuleSets = new HashMap<>();
|
||||
|
||||
|
||||
private Map<String, DictionaryModel> localAccessMap = new HashMap<>();
|
||||
public void updateDictionary(String ruleSetId) {
|
||||
|
||||
long version = dictionaryClient.getVersion(ruleSetId);
|
||||
|
||||
var foundDictionary = dictionariesByRuleSets.get(ruleSetId);
|
||||
|
||||
public void updateDictionary() {
|
||||
|
||||
long version = dictionaryClient.getVersion();
|
||||
if (version > dictionaryVersion) {
|
||||
dictionaryVersion = version;
|
||||
updateDictionaryEntry();
|
||||
if (foundDictionary == null || version > foundDictionary.getDictionaryVersion()) {
|
||||
updateDictionaryEntry(ruleSetId, version);
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
private void updateDictionaryEntry() {
|
||||
private void updateDictionaryEntry(String ruleSetId, long version) {
|
||||
|
||||
try {
|
||||
TypeResponse typeResponse = dictionaryClient.getAllTypes();
|
||||
DictionaryRepresentation dictionaryRepresentation = new DictionaryRepresentation();
|
||||
|
||||
TypeResponse typeResponse = dictionaryClient.getAllTypes(ruleSetId);
|
||||
if (typeResponse != null && CollectionUtils.isNotEmpty(typeResponse.getTypes())) {
|
||||
|
||||
dictionary = typeResponse.getTypes()
|
||||
List<DictionaryModel> dictionary = typeResponse.getTypes()
|
||||
.stream()
|
||||
.map(t -> new DictionaryModel(t.getType(), t.getRank(), convertColor(t.getHexColor()), t.isCaseInsensitive(), t
|
||||
.isHint(), t.isRecommendation(), convertEntries(t), new HashSet<>()))
|
||||
.sorted(Comparator.comparingInt(DictionaryModel::getRank).reversed())
|
||||
.collect(Collectors.toList());
|
||||
|
||||
localAccessMap.clear();
|
||||
dictionary.forEach(dm -> localAccessMap.put(dm.getType(), dm));
|
||||
|
||||
Colors colors = dictionaryClient.getColors();
|
||||
defaultColor = convertColor(colors.getDefaultColor());
|
||||
requestAddColor = convertColor(colors.getRequestAdd());
|
||||
requestRemoveColor = convertColor(colors.getRequestRemove());
|
||||
notRedactedColor = convertColor(colors.getNotRedacted());
|
||||
dictionary.forEach(dm -> dictionaryRepresentation.getLocalAccessMap().put(dm.getType(), dm));
|
||||
|
||||
Colors colors = dictionaryClient.getColors(ruleSetId);
|
||||
|
||||
dictionaryRepresentation.setDefaultColor(convertColor(colors.getDefaultColor()));
|
||||
dictionaryRepresentation.setRequestAddColor(convertColor(colors.getRequestAdd()));
|
||||
dictionaryRepresentation.setRequestRemoveColor(convertColor(colors.getRequestRemove()));
|
||||
dictionaryRepresentation.setNotRedactedColor(convertColor(colors.getNotRedacted()));
|
||||
dictionaryRepresentation.setRuleSetId(ruleSetId);
|
||||
dictionaryRepresentation.setDictionaryVersion(version);
|
||||
dictionaryRepresentation.setDictionary(dictionary);
|
||||
|
||||
dictionariesByRuleSets.put(ruleSetId, dictionaryRepresentation);
|
||||
}
|
||||
} catch (FeignException e) {
|
||||
log.warn("Got some unknown feignException", e);
|
||||
@@ -96,12 +85,12 @@ public class DictionaryService {
|
||||
}
|
||||
|
||||
|
||||
public void updateExternalDictionary(Dictionary dictionary){
|
||||
public void updateExternalDictionary(Dictionary dictionary, String ruleSetId) {
|
||||
dictionary.getDictionaryModels().forEach(dm -> {
|
||||
if(dm.isRecommendation() && !dm.getLocalEntries().isEmpty()){
|
||||
dictionaryClient.addEntries(dm.getType(), new ArrayList<>(dm.getLocalEntries()), false);
|
||||
long externalVersion = dictionaryClient.getVersion();
|
||||
if(externalVersion == dictionary.getVersion() + 1){
|
||||
if (dm.isRecommendation() && !dm.getLocalEntries().isEmpty()) {
|
||||
dictionaryClient.addEntries(dm.getType(), ruleSetId, new ArrayList<>(dm.getLocalEntries()), false);
|
||||
long externalVersion = dictionaryClient.getVersion(ruleSetId);
|
||||
if (externalVersion == dictionary.getVersion() + 1) {
|
||||
dictionary.setVersion(externalVersion);
|
||||
}
|
||||
}
|
||||
@@ -112,13 +101,13 @@ public class DictionaryService {
|
||||
private Set<String> convertEntries(TypeResult t) {
|
||||
|
||||
if (t.isCaseInsensitive()) {
|
||||
return dictionaryClient.getDictionaryForType(t.getType())
|
||||
return dictionaryClient.getDictionaryForType(t.getType(), t.getRuleSetId())
|
||||
.getEntries()
|
||||
.stream()
|
||||
.map(String::toLowerCase)
|
||||
.collect(Collectors.toSet());
|
||||
} else {
|
||||
return new HashSet<>(dictionaryClient.getDictionaryForType(t.getType()).getEntries());
|
||||
return new HashSet<>(dictionaryClient.getDictionaryForType(t.getType(), t.getRuleSetId()).getEntries());
|
||||
}
|
||||
}
|
||||
|
||||
@@ -130,9 +119,9 @@ public class DictionaryService {
|
||||
}
|
||||
|
||||
|
||||
public boolean isCaseInsensitiveDictionary(String type) {
|
||||
public boolean isCaseInsensitiveDictionary(String type, String ruleSetId) {
|
||||
|
||||
DictionaryModel dictionaryModel = localAccessMap.get(type);
|
||||
DictionaryModel dictionaryModel = dictionariesByRuleSets.get(ruleSetId).getLocalAccessMap().get(type);
|
||||
if (dictionaryModel != null) {
|
||||
return dictionaryModel.isCaseInsensitive();
|
||||
}
|
||||
@@ -140,28 +129,28 @@ public class DictionaryService {
|
||||
}
|
||||
|
||||
|
||||
public float[] getColor(String type) {
|
||||
public float[] getColor(String type, String ruleSetId) {
|
||||
|
||||
DictionaryModel model = localAccessMap.get(type);
|
||||
DictionaryModel model = dictionariesByRuleSets.get(ruleSetId).getLocalAccessMap().get(type);
|
||||
if (model != null) {
|
||||
return model.getColor();
|
||||
}
|
||||
return defaultColor;
|
||||
return dictionariesByRuleSets.get(ruleSetId).getDefaultColor();
|
||||
}
|
||||
|
||||
|
||||
public boolean isHint(String type) {
|
||||
public boolean isHint(String type, String ruleSetId) {
|
||||
|
||||
DictionaryModel model = localAccessMap.get(type);
|
||||
DictionaryModel model = dictionariesByRuleSets.get(ruleSetId).getLocalAccessMap().get(type);
|
||||
if (model != null) {
|
||||
return model.isHint();
|
||||
}
|
||||
return false;
|
||||
}
|
||||
|
||||
public boolean isRecommendation(String type) {
|
||||
public boolean isRecommendation(String type, String ruleSetId) {
|
||||
|
||||
DictionaryModel model = localAccessMap.get(type);
|
||||
DictionaryModel model = dictionariesByRuleSets.get(ruleSetId).getLocalAccessMap().get(type);
|
||||
if (model != null) {
|
||||
return model.isRecommendation();
|
||||
}
|
||||
@@ -169,14 +158,27 @@ public class DictionaryService {
|
||||
}
|
||||
|
||||
|
||||
public Dictionary getDeepCopyDictionary(){
|
||||
public Dictionary getDeepCopyDictionary(String ruleSetId) {
|
||||
List<DictionaryModel> copy = new ArrayList<>();
|
||||
|
||||
var representation = dictionariesByRuleSets.get(ruleSetId);
|
||||
var dictionary = dictionariesByRuleSets.get(ruleSetId).getDictionary();
|
||||
dictionary.forEach(dm -> {
|
||||
copy.add(SerializationUtils.clone(dm));
|
||||
});
|
||||
|
||||
return new Dictionary(copy, dictionaryVersion);
|
||||
return new Dictionary(copy, representation.getDictionaryVersion());
|
||||
}
|
||||
|
||||
public float[] getRequestRemoveColor(String ruleSetId) {
|
||||
return dictionariesByRuleSets.get(ruleSetId).getRequestAddColor();
|
||||
}
|
||||
|
||||
public float[] getNotRedactedColor(String ruleSetId) {
|
||||
return dictionariesByRuleSets.get(ruleSetId).getNotRedactedColor();
|
||||
}
|
||||
|
||||
public float[] getRequestAddColor(String ruleSetId) {
|
||||
return dictionariesByRuleSets.get(ruleSetId).getRequestAddColor();
|
||||
}
|
||||
}
|
||||
+54
-26
@@ -1,9 +1,11 @@
|
||||
package com.iqser.red.service.redaction.v1.server.redaction.service;
|
||||
|
||||
import java.io.ByteArrayInputStream;
|
||||
import java.io.InputStream;
|
||||
import java.nio.charset.StandardCharsets;
|
||||
|
||||
import com.iqser.red.service.configuration.v1.api.model.RulesResponse;
|
||||
import com.iqser.red.service.redaction.v1.server.client.RulesClient;
|
||||
import com.iqser.red.service.redaction.v1.server.exception.RulesValidationException;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.Section;
|
||||
import lombok.Getter;
|
||||
import lombok.RequiredArgsConstructor;
|
||||
import org.apache.commons.lang3.StringUtils;
|
||||
import org.kie.api.KieServices;
|
||||
import org.kie.api.builder.KieBuilder;
|
||||
@@ -11,15 +13,13 @@ import org.kie.api.builder.KieFileSystem;
|
||||
import org.kie.api.builder.KieModule;
|
||||
import org.kie.api.runtime.KieContainer;
|
||||
import org.kie.api.runtime.KieSession;
|
||||
import org.springframework.beans.factory.annotation.Autowired;
|
||||
import org.springframework.stereotype.Service;
|
||||
|
||||
import com.iqser.red.service.redaction.v1.server.client.RulesClient;
|
||||
import com.iqser.red.service.redaction.v1.server.exception.RulesValidationException;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.Section;
|
||||
|
||||
import lombok.Getter;
|
||||
import lombok.RequiredArgsConstructor;
|
||||
import java.io.ByteArrayInputStream;
|
||||
import java.io.InputStream;
|
||||
import java.nio.charset.StandardCharsets;
|
||||
import java.util.HashMap;
|
||||
import java.util.Map;
|
||||
|
||||
@Service
|
||||
@RequiredArgsConstructor
|
||||
@@ -27,13 +27,22 @@ public class DroolsExecutionService {
|
||||
|
||||
private final RulesClient rulesClient;
|
||||
|
||||
@Autowired
|
||||
private KieContainer kieContainer;
|
||||
private Map<String, KieContainer> kieContainers = new HashMap<>();
|
||||
|
||||
public KieContainer getKieContainer(String ruleSetId) {
|
||||
KieContainer container = kieContainers.get(ruleSetId);
|
||||
if (container == null) {
|
||||
return createOrUpdateKieContainer(ruleSetId);
|
||||
} else {
|
||||
return container;
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
@Getter
|
||||
private long rulesVersion = -1;
|
||||
|
||||
public Section executeRules(Section section) {
|
||||
public Section executeRules(KieContainer kieContainer, Section section) {
|
||||
|
||||
KieSession kieSession = kieContainer.newKieSession();
|
||||
kieSession.setGlobal("section", section);
|
||||
@@ -45,34 +54,53 @@ public class DroolsExecutionService {
|
||||
|
||||
}
|
||||
|
||||
public void updateRules() {
|
||||
public KieContainer updateRules(String ruleSetId) {
|
||||
|
||||
long version = rulesClient.getVersion();
|
||||
long version = rulesClient.getVersion(ruleSetId);
|
||||
if (version > rulesVersion) {
|
||||
rulesVersion = version;
|
||||
updateRules(rulesClient.getRules().getRules());
|
||||
return createOrUpdateKieContainer(ruleSetId);
|
||||
}
|
||||
return getKieContainer(ruleSetId);
|
||||
|
||||
}
|
||||
|
||||
public void updateRules(String drlAsString) {
|
||||
private KieContainer createOrUpdateKieContainer(String ruleSetId) {
|
||||
|
||||
try {
|
||||
if (StringUtils.isEmpty(drlAsString)) {
|
||||
|
||||
RulesResponse rules = rulesClient.getRules(ruleSetId);
|
||||
if (rules == null || StringUtils.isEmpty(rules.getRules())) {
|
||||
throw new RuntimeException("Rules cannot be empty.");
|
||||
}
|
||||
|
||||
KieServices kieServices = KieServices.Factory.get();
|
||||
InputStream input = new ByteArrayInputStream(drlAsString.getBytes(StandardCharsets.UTF_8));
|
||||
KieFileSystem kieFileSystem = kieServices.newKieFileSystem();
|
||||
kieFileSystem.write("src/main/resources/drools/rules.drl", kieServices.getResources().newInputStreamResource(input));
|
||||
KieBuilder kieBuilder = kieServices.newKieBuilder(kieFileSystem);
|
||||
kieBuilder.buildAll();
|
||||
KieModule kieModule = kieBuilder.getKieModule();
|
||||
kieContainer.updateToVersion(kieModule.getReleaseId());
|
||||
KieModule kieModule = getKieModule(ruleSetId, rules.getRules(), kieServices);
|
||||
|
||||
var container = kieContainers.get(ruleSetId);
|
||||
if (container != null) {
|
||||
container.updateToVersion(kieModule.getReleaseId());
|
||||
return container;
|
||||
}
|
||||
|
||||
container = kieServices.newKieContainer(kieModule.getReleaseId());
|
||||
kieContainers.put(ruleSetId, container);
|
||||
return container;
|
||||
} catch (Exception e) {
|
||||
throw new RulesValidationException("Could not update rules: " + e.getMessage(), e);
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
private KieModule getKieModule(String ruleSetId, String rules, KieServices kieServices) {
|
||||
KieFileSystem kieFileSystem = kieServices.newKieFileSystem();
|
||||
InputStream input = new ByteArrayInputStream(rules.getBytes(StandardCharsets.UTF_8));
|
||||
kieFileSystem.write("src/main/resources/drools/rules" + ruleSetId + ".drl", kieServices.getResources()
|
||||
.newInputStreamResource(input));
|
||||
KieBuilder kieBuilder = kieServices.newKieBuilder(kieFileSystem);
|
||||
kieBuilder.buildAll();
|
||||
return kieBuilder.getKieModule();
|
||||
}
|
||||
|
||||
|
||||
}
|
||||
+154
-123
@@ -1,19 +1,5 @@
|
||||
package com.iqser.red.service.redaction.v1.server.redaction.service;
|
||||
|
||||
import java.util.ArrayList;
|
||||
import java.util.HashMap;
|
||||
import java.util.HashSet;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
import java.util.Set;
|
||||
import java.util.regex.Pattern;
|
||||
import java.util.stream.Collectors;
|
||||
import java.util.stream.Stream;
|
||||
|
||||
import org.apache.commons.collections4.CollectionUtils;
|
||||
import org.apache.commons.lang3.StringUtils;
|
||||
import org.springframework.stereotype.Service;
|
||||
|
||||
import com.iqser.red.service.redaction.v1.model.ManualRedactionEntry;
|
||||
import com.iqser.red.service.redaction.v1.model.ManualRedactions;
|
||||
import com.iqser.red.service.redaction.v1.model.Rectangle;
|
||||
@@ -28,11 +14,26 @@ import com.iqser.red.service.redaction.v1.server.redaction.model.EntityPositionS
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.Section;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.SectionSearchableTextPair;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.utils.PositionUtil;
|
||||
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Cell;
|
||||
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
|
||||
|
||||
import lombok.RequiredArgsConstructor;
|
||||
import lombok.extern.slf4j.Slf4j;
|
||||
import org.apache.commons.collections4.CollectionUtils;
|
||||
import org.apache.commons.lang3.StringUtils;
|
||||
import org.kie.api.runtime.KieContainer;
|
||||
import org.springframework.stereotype.Service;
|
||||
|
||||
import java.util.ArrayList;
|
||||
import java.util.HashMap;
|
||||
import java.util.HashSet;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
import java.util.Set;
|
||||
import java.util.concurrent.atomic.AtomicInteger;
|
||||
import java.util.regex.Pattern;
|
||||
import java.util.stream.Collectors;
|
||||
import java.util.stream.Stream;
|
||||
|
||||
@Slf4j
|
||||
@Service
|
||||
@@ -44,15 +45,15 @@ public class EntityRedactionService {
|
||||
private final SurroundingWordsService surroundingWordsService;
|
||||
|
||||
|
||||
public void processDocument(Document classifiedDoc, ManualRedactions manualRedactions) {
|
||||
public void processDocument(Document classifiedDoc, String ruleSetId, ManualRedactions manualRedactions) {
|
||||
|
||||
dictionaryService.updateDictionary();
|
||||
droolsExecutionService.updateRules();
|
||||
dictionaryService.updateDictionary(ruleSetId);
|
||||
KieContainer container = droolsExecutionService.updateRules(ruleSetId);
|
||||
long rulesVersion = droolsExecutionService.getRulesVersion();
|
||||
|
||||
Dictionary dictionary = dictionaryService.getDeepCopyDictionary();
|
||||
Dictionary dictionary = dictionaryService.getDeepCopyDictionary(ruleSetId);
|
||||
|
||||
Set<Entity> documentEntities = new HashSet<>(findEntities(classifiedDoc, manualRedactions, dictionary, false, null));
|
||||
Set<Entity> documentEntities = new HashSet<>(findEntities(classifiedDoc, container, manualRedactions, dictionary, false, null));
|
||||
|
||||
if (dictionary.hasLocalEntries()) {
|
||||
|
||||
@@ -64,12 +65,12 @@ public class EntityRedactionService {
|
||||
}
|
||||
});
|
||||
|
||||
Set<Entity> foundByLocal = findEntities(classifiedDoc, manualRedactions, dictionary, true, hintsPerSectionNumber);
|
||||
Set<Entity> foundByLocal = findEntities(classifiedDoc, container, manualRedactions, dictionary, true, hintsPerSectionNumber);
|
||||
// HashSet keeps the older value, but we want the new only.
|
||||
documentEntities.removeAll(foundByLocal);
|
||||
documentEntities.addAll(foundByLocal);
|
||||
|
||||
removeEntitiesContainedInLarger(documentEntities);
|
||||
PositionUtil.removeEntitiesContainedInLarger(documentEntities);
|
||||
}
|
||||
|
||||
for (Entity entity : documentEntities) {
|
||||
@@ -88,99 +89,38 @@ public class EntityRedactionService {
|
||||
}
|
||||
}
|
||||
|
||||
dictionaryService.updateExternalDictionary(dictionary);
|
||||
dictionaryService.updateExternalDictionary(dictionary, ruleSetId);
|
||||
|
||||
classifiedDoc.setDictionaryVersion(dictionary.getVersion());
|
||||
classifiedDoc.setRulesVersion(rulesVersion);
|
||||
}
|
||||
|
||||
|
||||
private Set<Entity> findEntities(Document classifiedDoc, ManualRedactions manualRedactions, Dictionary dictionary,
|
||||
private Set<Entity> findEntities(Document classifiedDoc, KieContainer kieContainer, ManualRedactions manualRedactions, Dictionary dictionary,
|
||||
boolean local, Map<Integer, Set<Entity>> hintsPerSectionNumber) {
|
||||
|
||||
Set<Entity> documentEntities = new HashSet<>();
|
||||
int sectionNumber = 1;
|
||||
|
||||
AtomicInteger sectionNumber = new AtomicInteger(1);
|
||||
List<SectionSearchableTextPair> sectionSearchableTextPairs = new ArrayList<>();
|
||||
for (Paragraph paragraph : classifiedDoc.getParagraphs()) {
|
||||
|
||||
SearchableText searchableText = paragraph.getSearchableText();
|
||||
|
||||
List<Table> tables = paragraph.getTables();
|
||||
|
||||
for (Table table : tables) {
|
||||
boolean singleCellTable = table.getRowCount() == 1 && table.getColCount() == 1;
|
||||
for (List<Cell> row : table.getRows()) {
|
||||
SearchableText searchableRow = new SearchableText();
|
||||
Map<String, CellValue> tabularData = new HashMap<>();
|
||||
int start = 0;
|
||||
List<Integer> cellStarts = new ArrayList<>();
|
||||
for (Cell cell : row) {
|
||||
if (!singleCellTable && cell.isHeaderCell() || CollectionUtils.isEmpty(cell.getTextBlocks())) {
|
||||
continue;
|
||||
}
|
||||
addSectionToManualRedactions(cell.getTextBlocks(), manualRedactions, table.getHeadline(), sectionNumber);
|
||||
int cellStart = start;
|
||||
cell.getHeaderCells().forEach(headerCell -> {
|
||||
StringBuilder headerBuilder = new StringBuilder();
|
||||
headerCell.getTextBlocks().forEach(textBlock -> headerBuilder.append(textBlock.getText()));
|
||||
String headerName = headerBuilder.toString()
|
||||
.replaceAll("\n", "")
|
||||
.replaceAll(" ", "")
|
||||
.replaceAll("-", "");
|
||||
tabularData.put(headerName, new CellValue(cell.getTextBlocks(), cellStart));
|
||||
});
|
||||
|
||||
for (TextBlock textBlock : cell.getTextBlocks()) {
|
||||
// TODO avoid cell overlap merging.
|
||||
searchableRow.addAll(textBlock.getSequences());
|
||||
}
|
||||
cellStarts.add(cellStart);
|
||||
start = start + cell.toString().trim().length() + 1;
|
||||
}
|
||||
Set<Entity> rowEntities = findEntities(searchableRow, table.getHeadline(), sectionNumber, dictionary
|
||||
.getDictionaryModels(), local);
|
||||
surroundingWordsService.addSurroundingText(rowEntities, searchableRow, dictionary, cellStarts);
|
||||
|
||||
sectionSearchableTextPairs.add(new SectionSearchableTextPair(Section.builder()
|
||||
.isLocal(local)
|
||||
.dictionaryTypes(dictionary.getTypes())
|
||||
.entities(hintsPerSectionNumber != null && hintsPerSectionNumber.containsKey(sectionNumber) ? Stream
|
||||
.concat(rowEntities.stream(), hintsPerSectionNumber.get(sectionNumber).stream())
|
||||
.collect(Collectors.toSet()) : rowEntities)
|
||||
.text(searchableRow.getAsStringWithLinebreaks())
|
||||
.searchText(searchableRow.toString())
|
||||
.headline(table.getHeadline())
|
||||
.sectionNumber(sectionNumber)
|
||||
.tabularData(tabularData)
|
||||
.build(), searchableRow));
|
||||
|
||||
sectionNumber++;
|
||||
if (table.getColCount() == 2) {
|
||||
sectionSearchableTextPairs.addAll(processTableAsOneText(table, manualRedactions, sectionNumber, dictionary, local, hintsPerSectionNumber));
|
||||
} else {
|
||||
sectionSearchableTextPairs.addAll(processTablePerRow(table, manualRedactions, sectionNumber, dictionary, local, hintsPerSectionNumber));
|
||||
}
|
||||
sectionNumber++;
|
||||
sectionNumber.incrementAndGet();
|
||||
}
|
||||
|
||||
addSectionToManualRedactions(paragraph.getTextBlocks(), manualRedactions, paragraph.getHeadline(), sectionNumber);
|
||||
Set<Entity> entities = findEntities(searchableText, paragraph.getHeadline(), sectionNumber, dictionary.getDictionaryModels(), local);
|
||||
surroundingWordsService.addSurroundingText(entities, searchableText, dictionary);
|
||||
|
||||
sectionSearchableTextPairs.add(new SectionSearchableTextPair(Section.builder()
|
||||
.isLocal(local)
|
||||
.dictionaryTypes(dictionary.getTypes())
|
||||
.entities(hintsPerSectionNumber != null && hintsPerSectionNumber.containsKey(sectionNumber) ? Stream
|
||||
.concat(entities.stream(), hintsPerSectionNumber.get(sectionNumber).stream())
|
||||
.collect(Collectors.toSet()) : entities)
|
||||
.text(searchableText.getAsStringWithLinebreaks())
|
||||
.searchText(searchableText.toString())
|
||||
.headline(paragraph.getHeadline())
|
||||
.sectionNumber(sectionNumber)
|
||||
.build(), searchableText));
|
||||
|
||||
sectionNumber++;
|
||||
sectionSearchableTextPairs.add(processText(paragraph, manualRedactions, sectionNumber, dictionary, local, hintsPerSectionNumber));
|
||||
sectionNumber.incrementAndGet();
|
||||
}
|
||||
|
||||
sectionSearchableTextPairs.forEach(sectionSearchableTextPair -> {
|
||||
Section analysedRowSection = droolsExecutionService.executeRules(sectionSearchableTextPair.getSection());
|
||||
documentEntities.addAll(clearAndFindPositions(analysedRowSection.getEntities(), sectionSearchableTextPair.getSearchableText(), dictionary));
|
||||
Section analysedRowSection = droolsExecutionService.executeRules(kieContainer,sectionSearchableTextPair.getSection());
|
||||
documentEntities.addAll(analysedRowSection.getEntities());
|
||||
|
||||
analysedRowSection.getLocalDictionaryAdds().keySet().forEach(key -> {
|
||||
if (dictionary.isRecommendation(key)) {
|
||||
@@ -211,23 +151,130 @@ public class EntityRedactionService {
|
||||
}
|
||||
|
||||
|
||||
private Set<Entity> clearAndFindPositions(Set<Entity> entities, SearchableText text, Dictionary dictionary) {
|
||||
private List<SectionSearchableTextPair> processTablePerRow(Table table, ManualRedactions manualRedactions,
|
||||
AtomicInteger sectionNumber, Dictionary dictionary, boolean local,
|
||||
Map<Integer, Set<Entity>> hintsPerSectionNumber) {
|
||||
|
||||
removeEntitiesContainedInLarger(entities);
|
||||
List<SectionSearchableTextPair> sectionSearchableTextPairs = new ArrayList<>();
|
||||
for (List<Cell> row : table.getRows()) {
|
||||
SearchableText searchableRow = new SearchableText();
|
||||
Map<String, CellValue> tabularData = new HashMap<>();
|
||||
int start = 0;
|
||||
List<Integer> cellStarts = new ArrayList<>();
|
||||
for (Cell cell : row) {
|
||||
if (CollectionUtils.isEmpty(cell.getTextBlocks())) {
|
||||
continue;
|
||||
}
|
||||
addSectionToManualRedactions(cell.getTextBlocks(), manualRedactions, table.getHeadline(), sectionNumber.intValue());
|
||||
int cellStart = start;
|
||||
cell.getHeaderCells().forEach(headerCell -> {
|
||||
StringBuilder headerBuilder = new StringBuilder();
|
||||
headerCell.getTextBlocks().forEach(textBlock -> headerBuilder.append(textBlock.getText()));
|
||||
String headerName = headerBuilder.toString()
|
||||
.replaceAll("\n", "")
|
||||
.replaceAll(" ", "")
|
||||
.replaceAll("-", "");
|
||||
tabularData.put(headerName, new CellValue(cell.getTextBlocks(), cellStart));
|
||||
});
|
||||
|
||||
for (Entity entity : entities) {
|
||||
if (entity.getPositionSequences().isEmpty()) {
|
||||
entity.setPositionSequences(text.getSequences(entity.getWord(), dictionary.isCaseInsensitiveDictionary(entity
|
||||
.getType()), entity.getTargetSequences()));
|
||||
for (TextBlock textBlock : cell.getTextBlocks()) {
|
||||
// TODO avoid cell overlap merging.
|
||||
searchableRow.addAll(textBlock.getSequences());
|
||||
}
|
||||
cellStarts.add(cellStart);
|
||||
start = start + cell.toString().trim().length() + 1;
|
||||
}
|
||||
Set<Entity> rowEntities = findEntities(searchableRow, table.getHeadline(), sectionNumber.intValue(), dictionary, local);
|
||||
surroundingWordsService.addSurroundingText(rowEntities, searchableRow, dictionary, cellStarts);
|
||||
|
||||
sectionSearchableTextPairs.add(new SectionSearchableTextPair(Section.builder()
|
||||
.isLocal(local)
|
||||
.dictionaryTypes(dictionary.getTypes())
|
||||
.entities(hintsPerSectionNumber != null && hintsPerSectionNumber.containsKey(sectionNumber.intValue()) ? Stream
|
||||
.concat(rowEntities.stream(), hintsPerSectionNumber.get(sectionNumber.intValue()).stream())
|
||||
.collect(Collectors.toSet()) : rowEntities)
|
||||
.text(searchableRow.getAsStringWithLinebreaks())
|
||||
.searchText(searchableRow.toString())
|
||||
.headline(table.getHeadline())
|
||||
.sectionNumber(sectionNumber.intValue())
|
||||
.tabularData(tabularData)
|
||||
.searchableText(searchableRow)
|
||||
.dictionary(dictionary)
|
||||
.build(), searchableRow));
|
||||
|
||||
sectionNumber.incrementAndGet();
|
||||
}
|
||||
return sectionSearchableTextPairs;
|
||||
}
|
||||
|
||||
|
||||
private List<SectionSearchableTextPair> processTableAsOneText(Table table, ManualRedactions manualRedactions,
|
||||
AtomicInteger sectionNumber, Dictionary dictionary,
|
||||
boolean local,
|
||||
Map<Integer, Set<Entity>> hintsPerSectionNumber) {
|
||||
|
||||
List<SectionSearchableTextPair> sectionSearchableTextPairs = new ArrayList<>();
|
||||
SearchableText entireTableText = new SearchableText();
|
||||
for (List<Cell> row : table.getRows()) {
|
||||
for (Cell cell : row) {
|
||||
if (CollectionUtils.isEmpty(cell.getTextBlocks())) {
|
||||
continue;
|
||||
}
|
||||
for (TextBlock textBlock : cell.getTextBlocks()) {
|
||||
entireTableText.addAll(textBlock.getSequences());
|
||||
}
|
||||
addSectionToManualRedactions(cell.getTextBlocks(), manualRedactions, table.getHeadline(), sectionNumber.intValue());
|
||||
}
|
||||
}
|
||||
|
||||
return entities;
|
||||
Set<Entity> rowEntities = findEntities(entireTableText, table.getHeadline(), sectionNumber.intValue(), dictionary, local);
|
||||
surroundingWordsService.addSurroundingText(rowEntities, entireTableText, dictionary);
|
||||
|
||||
sectionSearchableTextPairs.add(new SectionSearchableTextPair(Section.builder()
|
||||
.isLocal(local)
|
||||
.dictionaryTypes(dictionary.getTypes())
|
||||
.entities(hintsPerSectionNumber != null && hintsPerSectionNumber.containsKey(sectionNumber.intValue()) ? Stream.concat(rowEntities
|
||||
.stream(), hintsPerSectionNumber.get(sectionNumber.intValue()).stream())
|
||||
.collect(Collectors.toSet()) : rowEntities)
|
||||
.text(entireTableText.getAsStringWithLinebreaks())
|
||||
.searchText(entireTableText.toString())
|
||||
.headline(table.getHeadline())
|
||||
.sectionNumber(sectionNumber.intValue())
|
||||
.searchableText(entireTableText)
|
||||
.dictionary(dictionary)
|
||||
.build(), entireTableText));
|
||||
|
||||
return sectionSearchableTextPairs;
|
||||
}
|
||||
|
||||
|
||||
private SectionSearchableTextPair processText(Paragraph paragraph, ManualRedactions manualRedactions,
|
||||
AtomicInteger sectionNumber, Dictionary dictionary, boolean local,
|
||||
Map<Integer, Set<Entity>> hintsPerSectionNumber) {
|
||||
|
||||
SearchableText searchableText = paragraph.getSearchableText();
|
||||
addSectionToManualRedactions(paragraph.getTextBlocks(), manualRedactions, paragraph.getHeadline(), sectionNumber.intValue());
|
||||
Set<Entity> entities = findEntities(searchableText, paragraph.getHeadline(), sectionNumber.intValue(), dictionary, local);
|
||||
surroundingWordsService.addSurroundingText(entities, searchableText, dictionary);
|
||||
|
||||
return new SectionSearchableTextPair(Section.builder()
|
||||
.isLocal(local)
|
||||
.dictionaryTypes(dictionary.getTypes())
|
||||
.entities(hintsPerSectionNumber != null && hintsPerSectionNumber.containsKey(sectionNumber) ? Stream.concat(entities
|
||||
.stream(), hintsPerSectionNumber.get(sectionNumber).stream())
|
||||
.collect(Collectors.toSet()) : entities)
|
||||
.text(searchableText.getAsStringWithLinebreaks())
|
||||
.searchText(searchableText.toString())
|
||||
.headline(paragraph.getHeadline())
|
||||
.sectionNumber(sectionNumber.intValue())
|
||||
.searchableText(searchableText)
|
||||
.dictionary(dictionary)
|
||||
.build(), searchableText);
|
||||
}
|
||||
|
||||
|
||||
private Set<Entity> findEntities(SearchableText searchableText, String headline, int sectionNumber,
|
||||
List<DictionaryModel> dictionary, boolean local) {
|
||||
Dictionary dictionary, boolean local) {
|
||||
|
||||
Set<Entity> found = new HashSet<>();
|
||||
String searchableString = searchableText.toString();
|
||||
@@ -236,15 +283,15 @@ public class EntityRedactionService {
|
||||
}
|
||||
|
||||
String lowercaseInputString = searchableString.toLowerCase();
|
||||
for (DictionaryModel model : dictionary) {
|
||||
for (DictionaryModel model : dictionary.getDictionaryModels()) {
|
||||
if (model.isCaseInsensitive()) {
|
||||
found.addAll(find(lowercaseInputString, model.getValues(local), model.getType(), headline, sectionNumber, local));
|
||||
} else {
|
||||
found.addAll(find(searchableString, model.getValues(local), model.getType(), headline, sectionNumber, local));
|
||||
}
|
||||
}
|
||||
removeEntitiesContainedInLarger(found);
|
||||
return found;
|
||||
|
||||
return PositionUtil.clearAndFindPositions(found, searchableText, dictionary);
|
||||
|
||||
}
|
||||
|
||||
@@ -282,22 +329,6 @@ public class EntityRedactionService {
|
||||
}
|
||||
|
||||
|
||||
public void removeEntitiesContainedInLarger(Set<Entity> entities) {
|
||||
|
||||
List<Entity> wordsToRemove = new ArrayList<>();
|
||||
for (Entity word : entities) {
|
||||
for (Entity inner : entities) {
|
||||
if (inner.getWord().length() < word.getWord()
|
||||
.length() && inner.getStart() >= word.getStart() && inner.getEnd() <= word.getEnd() && word != inner && word
|
||||
.getSectionNumber() == inner.getSectionNumber()) {
|
||||
wordsToRemove.add(inner);
|
||||
}
|
||||
}
|
||||
}
|
||||
entities.removeAll(wordsToRemove);
|
||||
}
|
||||
|
||||
|
||||
private void addSectionToManualRedactions(List<TextBlock> textBlocks, ManualRedactions manualRedactions,
|
||||
String section, int sectionNumber) {
|
||||
|
||||
|
||||
+12
-12
@@ -1,17 +1,15 @@
|
||||
package com.iqser.red.service.redaction.v1.server.redaction.service;
|
||||
|
||||
import java.util.List;
|
||||
import java.util.Set;
|
||||
|
||||
import org.springframework.stereotype.Service;
|
||||
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
|
||||
import com.iqser.red.service.redaction.v1.server.settings.RedactionServiceSettings;
|
||||
|
||||
import lombok.RequiredArgsConstructor;
|
||||
import lombok.extern.slf4j.Slf4j;
|
||||
import org.springframework.stereotype.Service;
|
||||
|
||||
import java.util.List;
|
||||
import java.util.Set;
|
||||
|
||||
@Slf4j
|
||||
@Service
|
||||
@@ -94,7 +92,7 @@ public class SurroundingWordsService {
|
||||
int numberOfWordsBefore = wordsBefore.length > redactionServiceSettings.getNumberOfSurroundingWords() ? redactionServiceSettings
|
||||
.getNumberOfSurroundingWords() : wordsBefore.length;
|
||||
if (wordsBefore.length > 0) {
|
||||
entity.setTextBefore(concatWordsBefore(wordsBefore, numberOfWordsBefore));
|
||||
entity.setTextBefore(concatWordsBefore(wordsBefore, numberOfWordsBefore, textBefore.endsWith(" ")));
|
||||
}
|
||||
}
|
||||
|
||||
@@ -106,13 +104,13 @@ public class SurroundingWordsService {
|
||||
int numberOfWordsAfter = wordsAfter.length > redactionServiceSettings.getNumberOfSurroundingWords() ? redactionServiceSettings
|
||||
.getNumberOfSurroundingWords() : wordsAfter.length;
|
||||
if (wordsAfter.length > 0) {
|
||||
entity.setTextAfter(concatWordsAfter(wordsAfter, numberOfWordsAfter));
|
||||
entity.setTextAfter(concatWordsAfter(wordsAfter, numberOfWordsAfter, textAfter.startsWith(" ")));
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
private String concatWordsBefore(String[] words, int number) {
|
||||
private String concatWordsBefore(String[] words, int number, boolean endWithSpace) {
|
||||
|
||||
StringBuilder sb = new StringBuilder();
|
||||
|
||||
@@ -122,11 +120,12 @@ public class SurroundingWordsService {
|
||||
sb.append(words[i]).append(" ");
|
||||
}
|
||||
|
||||
return sb.toString().trim();
|
||||
String result = sb.toString().trim();
|
||||
return endWithSpace ? result + " " : result;
|
||||
}
|
||||
|
||||
|
||||
private String concatWordsAfter(String[] words, int number) {
|
||||
private String concatWordsAfter(String[] words, int number, boolean startWithSpace) {
|
||||
|
||||
StringBuilder sb = new StringBuilder();
|
||||
|
||||
@@ -134,7 +133,8 @@ public class SurroundingWordsService {
|
||||
sb.append(words[i]).append(" ");
|
||||
}
|
||||
|
||||
return sb.toString().trim();
|
||||
String result = sb.toString().trim();
|
||||
return startWithSpace ? " " + result : result;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
+72
@@ -0,0 +1,72 @@
|
||||
package com.iqser.red.service.redaction.v1.server.redaction.utils;
|
||||
|
||||
import java.util.ArrayList;
|
||||
import java.util.Comparator;
|
||||
import java.util.HashMap;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
import java.util.Set;
|
||||
import java.util.stream.Collectors;
|
||||
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.Dictionary;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.EntityPositionSequence;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.SearchableText;
|
||||
|
||||
import lombok.experimental.UtilityClass;
|
||||
import lombok.extern.slf4j.Slf4j;
|
||||
|
||||
@Slf4j
|
||||
@UtilityClass
|
||||
public class PositionUtil {
|
||||
|
||||
public Set<Entity> clearAndFindPositions(Set<Entity> entities, SearchableText text, Dictionary dictionary) {
|
||||
|
||||
Map<String, List<Entity>> entitiesByWord = new HashMap<>();
|
||||
|
||||
for (Entity entity : entities) {
|
||||
entitiesByWord.computeIfAbsent(entity.getWord(), (x) -> new ArrayList<>()).add(entity);
|
||||
}
|
||||
|
||||
for (String word : entitiesByWord.keySet()) {
|
||||
|
||||
List<Entity> orderedEntities = entitiesByWord.get(word)
|
||||
.stream()
|
||||
.sorted(Comparator.comparing(Entity::getStart))
|
||||
.collect(Collectors.toList());
|
||||
Entity firstEntity = orderedEntities.get(0);
|
||||
List<EntityPositionSequence> positionSequences = text.getSequences(firstEntity.getWord(), dictionary.isCaseInsensitiveDictionary(firstEntity
|
||||
.getType()), firstEntity.getTargetSequences());
|
||||
|
||||
for (int i = 0; i <= orderedEntities.size() - 1; i++) {
|
||||
try {
|
||||
orderedEntities.get(i).setPositionSequences(List.of(positionSequences.get(i)));
|
||||
} catch (Exception e){
|
||||
log.warn("Mismatch between EntityPositionSequence and found Entity!");
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
removeEntitiesContainedInLarger(entities);
|
||||
|
||||
return entities;
|
||||
}
|
||||
|
||||
|
||||
public void removeEntitiesContainedInLarger(Set<Entity> entities) {
|
||||
|
||||
List<Entity> wordsToRemove = new ArrayList<>();
|
||||
for (Entity word : entities) {
|
||||
for (Entity inner : entities) {
|
||||
if (inner.getWord().length() < word.getWord()
|
||||
.length() && inner.getStart() >= word.getStart() && inner.getEnd() <= word.getEnd() && word != inner && word
|
||||
.getSectionNumber() == inner.getSectionNumber()) {
|
||||
wordsToRemove.add(inner);
|
||||
}
|
||||
}
|
||||
}
|
||||
entities.removeAll(wordsToRemove);
|
||||
}
|
||||
|
||||
|
||||
}
|
||||
+55
-57
@@ -1,28 +1,5 @@
|
||||
package com.iqser.red.service.redaction.v1.server.visualization.service;
|
||||
|
||||
import java.awt.Color;
|
||||
import java.io.IOException;
|
||||
import java.util.ArrayList;
|
||||
import java.util.GregorianCalendar;
|
||||
import java.util.HashSet;
|
||||
import java.util.List;
|
||||
import java.util.Set;
|
||||
import java.util.stream.Collectors;
|
||||
|
||||
import org.apache.commons.collections4.CollectionUtils;
|
||||
import org.apache.pdfbox.pdmodel.PDDocument;
|
||||
import org.apache.pdfbox.pdmodel.PDPage;
|
||||
import org.apache.pdfbox.pdmodel.PDPageContentStream;
|
||||
import org.apache.pdfbox.pdmodel.common.PDRectangle;
|
||||
import org.apache.pdfbox.pdmodel.font.PDType1Font;
|
||||
import org.apache.pdfbox.pdmodel.graphics.color.PDColor;
|
||||
import org.apache.pdfbox.pdmodel.graphics.color.PDDeviceRGB;
|
||||
import org.apache.pdfbox.pdmodel.interactive.annotation.PDAnnotation;
|
||||
import org.apache.pdfbox.pdmodel.interactive.annotation.PDAnnotationText;
|
||||
import org.apache.pdfbox.pdmodel.interactive.annotation.PDAnnotationTextMarkup;
|
||||
import org.apache.pdfbox.text.TextPosition;
|
||||
import org.springframework.stereotype.Service;
|
||||
|
||||
import com.iqser.red.service.redaction.v1.model.CellRectangle;
|
||||
import com.iqser.red.service.redaction.v1.model.Comment;
|
||||
import com.iqser.red.service.redaction.v1.model.IdRemoval;
|
||||
@@ -44,8 +21,29 @@ import com.iqser.red.service.redaction.v1.server.redaction.service.DictionarySer
|
||||
import com.iqser.red.service.redaction.v1.server.tableextraction.model.AbstractTextContainer;
|
||||
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Cell;
|
||||
import com.iqser.red.service.redaction.v1.server.tableextraction.model.Table;
|
||||
|
||||
import lombok.RequiredArgsConstructor;
|
||||
import org.apache.commons.collections4.CollectionUtils;
|
||||
import org.apache.pdfbox.pdmodel.PDDocument;
|
||||
import org.apache.pdfbox.pdmodel.PDPage;
|
||||
import org.apache.pdfbox.pdmodel.PDPageContentStream;
|
||||
import org.apache.pdfbox.pdmodel.common.PDRectangle;
|
||||
import org.apache.pdfbox.pdmodel.font.PDType1Font;
|
||||
import org.apache.pdfbox.pdmodel.graphics.color.PDColor;
|
||||
import org.apache.pdfbox.pdmodel.graphics.color.PDDeviceRGB;
|
||||
import org.apache.pdfbox.pdmodel.interactive.annotation.PDAnnotation;
|
||||
import org.apache.pdfbox.pdmodel.interactive.annotation.PDAnnotationText;
|
||||
import org.apache.pdfbox.pdmodel.interactive.annotation.PDAnnotationTextMarkup;
|
||||
import org.apache.pdfbox.text.TextPosition;
|
||||
import org.springframework.stereotype.Service;
|
||||
|
||||
import java.awt.Color;
|
||||
import java.io.IOException;
|
||||
import java.util.ArrayList;
|
||||
import java.util.GregorianCalendar;
|
||||
import java.util.HashSet;
|
||||
import java.util.List;
|
||||
import java.util.Set;
|
||||
import java.util.stream.Collectors;
|
||||
|
||||
@Service
|
||||
@RequiredArgsConstructor
|
||||
@@ -55,7 +53,7 @@ public class AnnotationHighlightService {
|
||||
|
||||
|
||||
public void highlight(PDDocument document, Document classifiedDoc, boolean flatRedaction,
|
||||
ManualRedactions manualRedactions) throws IOException {
|
||||
ManualRedactions manualRedactions, String ruleSetId) throws IOException {
|
||||
|
||||
Set<Integer> manualRedactionPages = getManualRedactionPages(manualRedactions);
|
||||
|
||||
@@ -66,11 +64,11 @@ public class AnnotationHighlightService {
|
||||
drawSectionFrames(document, classifiedDoc, flatRedaction, pdPage, page);
|
||||
|
||||
if (classifiedDoc.getEntities().get(page) != null) {
|
||||
addAnnotations(pdPage, classifiedDoc, flatRedaction, manualRedactions, page);
|
||||
addAnnotations(pdPage, classifiedDoc, flatRedaction, manualRedactions, page, ruleSetId);
|
||||
}
|
||||
|
||||
if (manualRedactionPages.contains(page)) {
|
||||
addManualAnnotations(pdPage, classifiedDoc, manualRedactions, page);
|
||||
addManualAnnotations(pdPage, classifiedDoc, manualRedactions, page, ruleSetId);
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -94,7 +92,7 @@ public class AnnotationHighlightService {
|
||||
|
||||
|
||||
private void addAnnotations(PDPage pdPage, Document classifiedDoc, boolean flatRedaction,
|
||||
ManualRedactions manualRedactions, int page) throws IOException {
|
||||
ManualRedactions manualRedactions, int page, String ruleSetId) throws IOException {
|
||||
|
||||
List<PDAnnotation> annotations = pdPage.getAnnotations();
|
||||
|
||||
@@ -104,7 +102,7 @@ public class AnnotationHighlightService {
|
||||
entityLoop:
|
||||
for (Entity entity : classifiedDoc.getEntities().get(page)) {
|
||||
|
||||
if (flatRedaction && !isRedactionType(entity)) {
|
||||
if (flatRedaction && !isRedactionType(entity, ruleSetId)) {
|
||||
continue;
|
||||
}
|
||||
|
||||
@@ -113,7 +111,7 @@ public class AnnotationHighlightService {
|
||||
|
||||
for (EntityPositionSequence entityPositionSequence : entity.getPositionSequences()) {
|
||||
|
||||
RedactionLogEntry redactionLogEntry = createRedactionLogEntry(entity);
|
||||
RedactionLogEntry redactionLogEntry = createRedactionLogEntry(entity, ruleSetId);
|
||||
if (processedIds.contains(entityPositionSequence.getId())) {
|
||||
|
||||
// TODO refactor this outer loop jump as soon as we have the time.
|
||||
@@ -161,7 +159,7 @@ public class AnnotationHighlightService {
|
||||
|
||||
redactionLogEntry.getPositions().addAll(rectanglesPerLine);
|
||||
|
||||
annotations.addAll(createAnnotation(rectanglesPerLine, entityPositionSequence.getId(), createAnnotationContent(entity), getColor(entity, requestedToRemove), comments, !isHint(entity)));
|
||||
annotations.addAll(createAnnotation(rectanglesPerLine, entityPositionSequence.getId(), createAnnotationContent(entity), getColor(entity, ruleSetId, requestedToRemove), comments, !isHint(entity, ruleSetId)));
|
||||
}
|
||||
|
||||
redactionLogEntry.setId(entityPositionSequence.getId());
|
||||
@@ -203,7 +201,7 @@ public class AnnotationHighlightService {
|
||||
|
||||
|
||||
private void addManualAnnotations(PDPage pdPage, Document classifiedDoc, ManualRedactions manualRedactions,
|
||||
int page) throws IOException {
|
||||
int page, String ruleSetId) throws IOException {
|
||||
|
||||
if (manualRedactions == null) {
|
||||
return;
|
||||
@@ -215,7 +213,7 @@ public class AnnotationHighlightService {
|
||||
|
||||
String id = manualRedactionEntry.getId();
|
||||
|
||||
RedactionLogEntry redactionLogEntry = createRedactionLogEntry(manualRedactionEntry, id);
|
||||
RedactionLogEntry redactionLogEntry = createRedactionLogEntry(manualRedactionEntry, id, ruleSetId);
|
||||
|
||||
List<Rectangle> rectanglesOnPage = new ArrayList<>();
|
||||
for (Rectangle rectangle : manualRedactionEntry.getPositions()) {
|
||||
@@ -227,7 +225,7 @@ public class AnnotationHighlightService {
|
||||
|
||||
if (!rectanglesOnPage.isEmpty() && !approvedAndShouldBeInDictionary(manualRedactionEntry)) {
|
||||
annotations.addAll(createAnnotation(rectanglesOnPage, id, createAnnotationContent(manualRedactionEntry), getColorForManualAdd(manualRedactionEntry
|
||||
.getType(), manualRedactionEntry.getStatus()), manualRedactions.getComments().get(id), true));
|
||||
.getType(), ruleSetId, manualRedactionEntry.getStatus()), manualRedactions.getComments().get(id), true));
|
||||
classifiedDoc.getRedactionLogEntities().add(redactionLogEntry);
|
||||
}
|
||||
}
|
||||
@@ -240,11 +238,11 @@ public class AnnotationHighlightService {
|
||||
}
|
||||
|
||||
|
||||
private RedactionLogEntry createRedactionLogEntry(ManualRedactionEntry manualRedactionEntry, String id) {
|
||||
private RedactionLogEntry createRedactionLogEntry(ManualRedactionEntry manualRedactionEntry, String id, String ruleSetId) {
|
||||
|
||||
return RedactionLogEntry.builder()
|
||||
.id(id)
|
||||
.color(getColor(manualRedactionEntry.getType()))
|
||||
.color(getColor(manualRedactionEntry.getType(), ruleSetId))
|
||||
.reason(manualRedactionEntry.getReason())
|
||||
.legalBasis(manualRedactionEntry.getLegalBasis())
|
||||
.value(manualRedactionEntry.getValue())
|
||||
@@ -261,17 +259,17 @@ public class AnnotationHighlightService {
|
||||
}
|
||||
|
||||
|
||||
private RedactionLogEntry createRedactionLogEntry(Entity entity) {
|
||||
private RedactionLogEntry createRedactionLogEntry(Entity entity, String ruleSetId) {
|
||||
|
||||
return RedactionLogEntry.builder()
|
||||
.color(getColor(entity, false))
|
||||
.color(getColor(entity, ruleSetId, false))
|
||||
.reason(entity.getRedactionReason())
|
||||
.legalBasis(entity.getLegalBasis())
|
||||
.value(entity.getWord())
|
||||
.type(entity.getType())
|
||||
.redacted(entity.isRedaction())
|
||||
.isHint(isHint(entity))
|
||||
.isRecommendation(isRecommendation(entity))
|
||||
.isHint(isHint(entity, ruleSetId))
|
||||
.isRecommendation(isRecommendation(entity, ruleSetId))
|
||||
.section(entity.getHeadline())
|
||||
.sectionNumber(entity.getSectionNumber())
|
||||
.matchedRule(entity.getMatchedRule())
|
||||
@@ -389,49 +387,49 @@ public class AnnotationHighlightService {
|
||||
}
|
||||
|
||||
|
||||
private boolean isRedactionType(Entity entity) {
|
||||
private boolean isRedactionType(Entity entity, String ruleSetId) {
|
||||
|
||||
if (!entity.isRedaction()) {
|
||||
return false;
|
||||
}
|
||||
return !isHint(entity);
|
||||
return !isHint(entity, ruleSetId);
|
||||
}
|
||||
|
||||
|
||||
private float[] getColor(Entity entity, boolean requestedToRemove) {
|
||||
private float[] getColor(Entity entity, String ruleSetId, boolean requestedToRemove) {
|
||||
|
||||
if (requestedToRemove) {
|
||||
return dictionaryService.getRequestRemoveColor();
|
||||
return dictionaryService.getRequestRemoveColor(ruleSetId);
|
||||
}
|
||||
if (!entity.isRedaction() && !isHint(entity)) {
|
||||
return dictionaryService.getNotRedactedColor();
|
||||
if (!entity.isRedaction() && !isHint(entity, ruleSetId)) {
|
||||
return dictionaryService.getNotRedactedColor(ruleSetId);
|
||||
}
|
||||
return dictionaryService.getColor(entity.getType());
|
||||
return dictionaryService.getColor(entity.getType(), ruleSetId);
|
||||
}
|
||||
|
||||
|
||||
private float[] getColorForManualAdd(String type, Status status) {
|
||||
private float[] getColorForManualAdd(String type, String ruleSetId, Status status) {
|
||||
|
||||
if (status.equals(Status.REQUESTED)) {
|
||||
return dictionaryService.getRequestAddColor();
|
||||
return dictionaryService.getRequestAddColor(ruleSetId);
|
||||
} else if (status.equals(Status.DECLINED)) {
|
||||
return dictionaryService.getNotRedactedColor();
|
||||
return dictionaryService.getNotRedactedColor(ruleSetId);
|
||||
}
|
||||
return getColor(type);
|
||||
return getColor(type, ruleSetId);
|
||||
}
|
||||
|
||||
|
||||
private float[] getColor(String type) {
|
||||
return dictionaryService.getColor(type);
|
||||
private float[] getColor(String type, String ruleSetId) {
|
||||
return dictionaryService.getColor(type, ruleSetId);
|
||||
}
|
||||
|
||||
|
||||
private boolean isHint(Entity entity) {
|
||||
return dictionaryService.isHint(entity.getType());
|
||||
private boolean isHint(Entity entity, String ruleSetId) {
|
||||
return dictionaryService.isHint(entity.getType(), ruleSetId);
|
||||
}
|
||||
|
||||
private boolean isRecommendation(Entity entity) {
|
||||
return dictionaryService.isRecommendation(entity.getType());
|
||||
private boolean isRecommendation(Entity entity, String ruleSetId) {
|
||||
return dictionaryService.isRecommendation(entity.getType(), ruleSetId);
|
||||
}
|
||||
|
||||
|
||||
|
||||
+68
-60
@@ -1,45 +1,5 @@
|
||||
package com.iqser.red.service.redaction.v1.server;
|
||||
|
||||
import static org.assertj.core.api.Assertions.assertThat;
|
||||
import static org.mockito.Mockito.when;
|
||||
import static org.springframework.boot.test.context.SpringBootTest.WebEnvironment.DEFINED_PORT;
|
||||
|
||||
import java.io.BufferedReader;
|
||||
import java.io.ByteArrayInputStream;
|
||||
import java.io.File;
|
||||
import java.io.FileInputStream;
|
||||
import java.io.FileOutputStream;
|
||||
import java.io.IOException;
|
||||
import java.io.InputStream;
|
||||
import java.io.InputStreamReader;
|
||||
import java.net.URL;
|
||||
import java.nio.charset.StandardCharsets;
|
||||
import java.time.OffsetDateTime;
|
||||
import java.util.ArrayList;
|
||||
import java.util.HashMap;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
import java.util.Set;
|
||||
import java.util.UUID;
|
||||
import java.util.stream.Collectors;
|
||||
|
||||
import org.apache.commons.io.IOUtils;
|
||||
import org.junit.Before;
|
||||
import org.junit.Test;
|
||||
import org.junit.runner.RunWith;
|
||||
import org.kie.api.KieServices;
|
||||
import org.kie.api.builder.KieBuilder;
|
||||
import org.kie.api.builder.KieFileSystem;
|
||||
import org.kie.api.builder.KieModule;
|
||||
import org.kie.api.runtime.KieContainer;
|
||||
import org.springframework.beans.factory.annotation.Autowired;
|
||||
import org.springframework.boot.test.context.SpringBootTest;
|
||||
import org.springframework.boot.test.context.TestConfiguration;
|
||||
import org.springframework.boot.test.mock.mockito.MockBean;
|
||||
import org.springframework.context.annotation.Bean;
|
||||
import org.springframework.core.io.ClassPathResource;
|
||||
import org.springframework.test.context.junit4.SpringRunner;
|
||||
|
||||
import com.iqser.red.service.configuration.v1.api.model.Colors;
|
||||
import com.iqser.red.service.configuration.v1.api.model.DictionaryResponse;
|
||||
import com.iqser.red.service.configuration.v1.api.model.RulesResponse;
|
||||
@@ -60,6 +20,45 @@ import com.iqser.red.service.redaction.v1.server.client.RulesClient;
|
||||
import com.iqser.red.service.redaction.v1.server.controller.RedactionController;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.utils.ResourceLoader;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.utils.TextNormalizationUtilities;
|
||||
import org.apache.commons.io.IOUtils;
|
||||
import org.junit.Before;
|
||||
import org.junit.Test;
|
||||
import org.junit.runner.RunWith;
|
||||
import org.kie.api.KieServices;
|
||||
import org.kie.api.builder.KieBuilder;
|
||||
import org.kie.api.builder.KieFileSystem;
|
||||
import org.kie.api.builder.KieModule;
|
||||
import org.kie.api.runtime.KieContainer;
|
||||
import org.springframework.beans.factory.annotation.Autowired;
|
||||
import org.springframework.boot.test.context.SpringBootTest;
|
||||
import org.springframework.boot.test.context.TestConfiguration;
|
||||
import org.springframework.boot.test.mock.mockito.MockBean;
|
||||
import org.springframework.context.annotation.Bean;
|
||||
import org.springframework.core.io.ClassPathResource;
|
||||
import org.springframework.test.context.junit4.SpringRunner;
|
||||
|
||||
import java.io.BufferedReader;
|
||||
import java.io.ByteArrayInputStream;
|
||||
import java.io.File;
|
||||
import java.io.FileInputStream;
|
||||
import java.io.FileOutputStream;
|
||||
import java.io.IOException;
|
||||
import java.io.InputStream;
|
||||
import java.io.InputStreamReader;
|
||||
import java.net.URL;
|
||||
import java.nio.charset.StandardCharsets;
|
||||
import java.time.OffsetDateTime;
|
||||
import java.util.ArrayList;
|
||||
import java.util.HashMap;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
import java.util.Set;
|
||||
import java.util.UUID;
|
||||
import java.util.stream.Collectors;
|
||||
|
||||
import static org.assertj.core.api.Assertions.assertThat;
|
||||
import static org.mockito.Mockito.when;
|
||||
import static org.springframework.boot.test.context.SpringBootTest.WebEnvironment.DEFINED_PORT;
|
||||
|
||||
@RunWith(SpringRunner.class)
|
||||
@SpringBootTest(webEnvironment = DEFINED_PORT)
|
||||
@@ -100,6 +99,8 @@ public class RedactionIntegrationTest {
|
||||
private final Map<String, Boolean> recommendationTypeMap = new HashMap<>();
|
||||
private final Colors colors = new Colors();
|
||||
|
||||
private final static String TEST_RULESET_ID = "123";
|
||||
|
||||
@TestConfiguration
|
||||
public static class RedactionIntegrationTestConfiguration {
|
||||
|
||||
@@ -125,28 +126,28 @@ public class RedactionIntegrationTest {
|
||||
@Before
|
||||
public void stubClients() {
|
||||
|
||||
when(rulesClient.getVersion()).thenReturn(0L);
|
||||
when(rulesClient.getRules()).thenReturn(new RulesResponse(RULES));
|
||||
when(rulesClient.getVersion(TEST_RULESET_ID)).thenReturn(0L);
|
||||
when(rulesClient.getRules(TEST_RULESET_ID)).thenReturn(new RulesResponse(RULES));
|
||||
|
||||
loadDictionaryForTest();
|
||||
loadTypeForTest();
|
||||
when(dictionaryClient.getVersion()).thenReturn(0L);
|
||||
when(dictionaryClient.getAllTypes()).thenReturn(TypeResponse.builder().types(getTypeResponse()).build());
|
||||
when(dictionaryClient.getDictionaryForType(VERTEBRATE)).thenReturn(getDictionaryResponse(VERTEBRATE));
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS)).thenReturn(getDictionaryResponse(ADDRESS));
|
||||
when(dictionaryClient.getDictionaryForType(AUTHOR)).thenReturn(getDictionaryResponse(AUTHOR));
|
||||
when(dictionaryClient.getDictionaryForType(SPONSOR)).thenReturn(getDictionaryResponse(SPONSOR));
|
||||
when(dictionaryClient.getDictionaryForType(NO_REDACTION_INDICATOR)).thenReturn(getDictionaryResponse(NO_REDACTION_INDICATOR));
|
||||
when(dictionaryClient.getDictionaryForType(REDACTION_INDICATOR)).thenReturn(getDictionaryResponse(REDACTION_INDICATOR));
|
||||
when(dictionaryClient.getDictionaryForType(HINT_ONLY)).thenReturn(getDictionaryResponse(HINT_ONLY));
|
||||
when(dictionaryClient.getDictionaryForType(MUST_REDACT)).thenReturn(getDictionaryResponse(MUST_REDACT));
|
||||
when(dictionaryClient.getDictionaryForType(PUBLISHED_INFORMATION)).thenReturn(getDictionaryResponse(PUBLISHED_INFORMATION));
|
||||
when(dictionaryClient.getDictionaryForType(TEST_METHOD)).thenReturn(getDictionaryResponse(TEST_METHOD));
|
||||
when(dictionaryClient.getDictionaryForType(PII)).thenReturn(getDictionaryResponse(PII));
|
||||
when(dictionaryClient.getDictionaryForType(RECOMMENDATION_AUTHOR)).thenReturn(getDictionaryResponse(RECOMMENDATION_AUTHOR));
|
||||
when(dictionaryClient.getDictionaryForType(RECOMMENDATION_ADDRESS)).thenReturn(getDictionaryResponse(RECOMMENDATION_ADDRESS));
|
||||
when(dictionaryClient.getDictionaryForType(FALSE_POSITIVE)).thenReturn(getDictionaryResponse(FALSE_POSITIVE));
|
||||
when(dictionaryClient.getColors()).thenReturn(colors);
|
||||
when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(0L);
|
||||
when(dictionaryClient.getAllTypes(TEST_RULESET_ID)).thenReturn(TypeResponse.builder().types(getTypeResponse()).build());
|
||||
when(dictionaryClient.getDictionaryForType(VERTEBRATE, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(VERTEBRATE));
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(ADDRESS));
|
||||
when(dictionaryClient.getDictionaryForType(AUTHOR, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(AUTHOR));
|
||||
when(dictionaryClient.getDictionaryForType(SPONSOR, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(SPONSOR));
|
||||
when(dictionaryClient.getDictionaryForType(NO_REDACTION_INDICATOR, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(NO_REDACTION_INDICATOR));
|
||||
when(dictionaryClient.getDictionaryForType(REDACTION_INDICATOR, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(REDACTION_INDICATOR));
|
||||
when(dictionaryClient.getDictionaryForType(HINT_ONLY, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(HINT_ONLY));
|
||||
when(dictionaryClient.getDictionaryForType(MUST_REDACT, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(MUST_REDACT));
|
||||
when(dictionaryClient.getDictionaryForType(PUBLISHED_INFORMATION, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(PUBLISHED_INFORMATION));
|
||||
when(dictionaryClient.getDictionaryForType(TEST_METHOD, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(TEST_METHOD));
|
||||
when(dictionaryClient.getDictionaryForType(PII, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(PII));
|
||||
when(dictionaryClient.getDictionaryForType(RECOMMENDATION_AUTHOR, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(RECOMMENDATION_AUTHOR));
|
||||
when(dictionaryClient.getDictionaryForType(RECOMMENDATION_ADDRESS, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(RECOMMENDATION_ADDRESS));
|
||||
when(dictionaryClient.getDictionaryForType(FALSE_POSITIVE, TEST_RULESET_ID)).thenReturn(getDictionaryResponse(FALSE_POSITIVE));
|
||||
when(dictionaryClient.getColors(TEST_RULESET_ID)).thenReturn(colors);
|
||||
}
|
||||
|
||||
|
||||
@@ -306,6 +307,7 @@ public class RedactionIntegrationTest {
|
||||
.stream()
|
||||
.map(typeColor -> TypeResult.builder()
|
||||
.type(typeColor.getKey())
|
||||
.ruleSetId(TEST_RULESET_ID)
|
||||
.hexColor(typeColor.getValue())
|
||||
.isHint(hintTypeMap.get(typeColor.getKey()))
|
||||
.isCaseInsensitive(caseInSensitiveMap.get(typeColor.getKey()))
|
||||
@@ -342,6 +344,7 @@ public class RedactionIntegrationTest {
|
||||
}
|
||||
for (File path : input) {
|
||||
RedactionRequest request = RedactionRequest.builder()
|
||||
.ruleSetId(TEST_RULESET_ID)
|
||||
.document(IOUtils.toByteArray(new FileInputStream(path)))
|
||||
.build();
|
||||
System.out.println("Redacting file : " + path.getName());
|
||||
@@ -390,6 +393,7 @@ public class RedactionIntegrationTest {
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/Metolachlor/S-Metolachlor_RAR_01_Volume_1_2018-09-06.pdf");
|
||||
|
||||
RedactionRequest request = RedactionRequest.builder()
|
||||
.ruleSetId(TEST_RULESET_ID)
|
||||
.document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
|
||||
.build();
|
||||
request.setFlatRedaction(false);
|
||||
@@ -420,6 +424,7 @@ public class RedactionIntegrationTest {
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/Metolachlor/S-Metolachlor_RAR_02_Volume_2_2018-09-06.pdf");
|
||||
|
||||
RedactionRequest request = RedactionRequest.builder()
|
||||
.ruleSetId(TEST_RULESET_ID)
|
||||
.document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
|
||||
.build();
|
||||
|
||||
@@ -471,6 +476,7 @@ public class RedactionIntegrationTest {
|
||||
manualRedactions.getEntriesToAdd().add(manualRedactionEntry);
|
||||
|
||||
RedactionRequest request = RedactionRequest.builder()
|
||||
.ruleSetId(TEST_RULESET_ID)
|
||||
.document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
|
||||
.manualRedactions(manualRedactions)
|
||||
.build();
|
||||
@@ -565,6 +571,7 @@ public class RedactionIntegrationTest {
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Phantom Cells.pdf");
|
||||
|
||||
RedactionRequest request = RedactionRequest.builder()
|
||||
.ruleSetId(TEST_RULESET_ID)
|
||||
.document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
|
||||
.build();
|
||||
request.setFlatRedaction(false);
|
||||
@@ -586,9 +593,10 @@ public class RedactionIntegrationTest {
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/sponsor_companies.pdf");
|
||||
|
||||
RedactionRequest request = RedactionRequest.builder()
|
||||
.ruleSetId(TEST_RULESET_ID)
|
||||
.flatRedaction(false)
|
||||
.document(IOUtils.toByteArray(pdfFileResource.getInputStream()))
|
||||
.build();
|
||||
request.setFlatRedaction(false);
|
||||
|
||||
RedactionResult result = redactionController.redact(request);
|
||||
|
||||
|
||||
+100
-98
@@ -1,25 +1,18 @@
|
||||
package com.iqser.red.service.redaction.v1.server.redaction.service;
|
||||
|
||||
import static org.assertj.core.api.Assertions.assertThat;
|
||||
import static org.mockito.Mockito.when;
|
||||
|
||||
import java.io.BufferedReader;
|
||||
import java.io.ByteArrayInputStream;
|
||||
import java.io.IOException;
|
||||
import java.io.InputStream;
|
||||
import java.io.InputStreamReader;
|
||||
import java.net.URL;
|
||||
import java.nio.charset.StandardCharsets;
|
||||
import java.util.ArrayList;
|
||||
import java.util.Arrays;
|
||||
import java.util.Collections;
|
||||
import java.util.HashSet;
|
||||
import java.util.List;
|
||||
import java.util.Set;
|
||||
import java.util.concurrent.atomic.AtomicLong;
|
||||
import java.util.regex.Matcher;
|
||||
import java.util.regex.Pattern;
|
||||
|
||||
import com.iqser.red.service.configuration.v1.api.model.Colors;
|
||||
import com.iqser.red.service.configuration.v1.api.model.DictionaryResponse;
|
||||
import com.iqser.red.service.configuration.v1.api.model.RulesResponse;
|
||||
import com.iqser.red.service.configuration.v1.api.model.TypeResponse;
|
||||
import com.iqser.red.service.configuration.v1.api.model.TypeResult;
|
||||
import com.iqser.red.service.redaction.v1.model.RedactionRequest;
|
||||
import com.iqser.red.service.redaction.v1.server.classification.model.Document;
|
||||
import com.iqser.red.service.redaction.v1.server.client.DictionaryClient;
|
||||
import com.iqser.red.service.redaction.v1.server.client.RulesClient;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.utils.PositionUtil;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.utils.ResourceLoader;
|
||||
import com.iqser.red.service.redaction.v1.server.segmentation.PdfSegmentationService;
|
||||
import org.apache.commons.io.IOUtils;
|
||||
import org.apache.pdfbox.pdmodel.PDDocument;
|
||||
import org.junit.Before;
|
||||
@@ -38,18 +31,25 @@ import org.springframework.context.annotation.Bean;
|
||||
import org.springframework.core.io.ClassPathResource;
|
||||
import org.springframework.test.context.junit4.SpringRunner;
|
||||
|
||||
import com.iqser.red.service.configuration.v1.api.model.Colors;
|
||||
import com.iqser.red.service.configuration.v1.api.model.DictionaryResponse;
|
||||
import com.iqser.red.service.configuration.v1.api.model.RulesResponse;
|
||||
import com.iqser.red.service.configuration.v1.api.model.TypeResponse;
|
||||
import com.iqser.red.service.configuration.v1.api.model.TypeResult;
|
||||
import com.iqser.red.service.redaction.v1.model.RedactionRequest;
|
||||
import com.iqser.red.service.redaction.v1.server.classification.model.Document;
|
||||
import com.iqser.red.service.redaction.v1.server.client.DictionaryClient;
|
||||
import com.iqser.red.service.redaction.v1.server.client.RulesClient;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.model.Entity;
|
||||
import com.iqser.red.service.redaction.v1.server.redaction.utils.ResourceLoader;
|
||||
import com.iqser.red.service.redaction.v1.server.segmentation.PdfSegmentationService;
|
||||
import java.io.BufferedReader;
|
||||
import java.io.ByteArrayInputStream;
|
||||
import java.io.IOException;
|
||||
import java.io.InputStream;
|
||||
import java.io.InputStreamReader;
|
||||
import java.net.URL;
|
||||
import java.nio.charset.StandardCharsets;
|
||||
import java.util.ArrayList;
|
||||
import java.util.Arrays;
|
||||
import java.util.Collections;
|
||||
import java.util.HashSet;
|
||||
import java.util.List;
|
||||
import java.util.Set;
|
||||
import java.util.concurrent.atomic.AtomicLong;
|
||||
import java.util.regex.Matcher;
|
||||
import java.util.regex.Pattern;
|
||||
|
||||
import static org.assertj.core.api.Assertions.assertThat;
|
||||
import static org.mockito.Mockito.when;
|
||||
|
||||
@SpringBootTest
|
||||
@RunWith(SpringRunner.class)
|
||||
@@ -78,6 +78,8 @@ public class EntityRedactionServiceTest {
|
||||
@Autowired
|
||||
private DroolsExecutionService droolsExecutionService;
|
||||
|
||||
private final static String TEST_RULESET_ID = "123";
|
||||
|
||||
@TestConfiguration
|
||||
public static class RedactionIntegrationTestConfiguration {
|
||||
|
||||
@@ -108,7 +110,7 @@ public class EntityRedactionServiceTest {
|
||||
Entity nesting = new Entity("nesting nested", "fake type", 2, 16, "fake headline", 0, false);
|
||||
entities.add(nested);
|
||||
entities.add(nesting);
|
||||
entityRedactionService.removeEntitiesContainedInLarger(entities);
|
||||
PositionUtil.removeEntitiesContainedInLarger(entities);
|
||||
|
||||
assertThat(entities.size()).isEqualTo(1);
|
||||
assertThat(entities).contains(nesting);
|
||||
@@ -128,21 +130,21 @@ public class EntityRedactionServiceTest {
|
||||
DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
|
||||
.entries(Arrays.asList("Casey, H.W.", "O’Loughlin, C.K.", "Salamon, C.M.", "Smith, S.H."))
|
||||
.build();
|
||||
when(dictionaryClient.getVersion()).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE)).thenReturn(dictionaryResponse);
|
||||
when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
|
||||
DictionaryResponse addressResponse = DictionaryResponse.builder()
|
||||
.entries(Collections.singletonList("Toxigenics, Inc., Decatur, IL 62526, USA"))
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE)).thenReturn(addressResponse);
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID)).thenReturn(addressResponse);
|
||||
|
||||
DictionaryResponse sponsorResponse = DictionaryResponse.builder()
|
||||
.entries(Collections.emptyList())
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(SPONSOR_CODE)).thenReturn(sponsorResponse);
|
||||
when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_RULESET_ID)).thenReturn(sponsorResponse);
|
||||
|
||||
try (PDDocument pdDocument = PDDocument.load(new ByteArrayInputStream(redactionRequest.getDocument()))) {
|
||||
Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
|
||||
entityRedactionService.processDocument(classifiedDoc, null);
|
||||
entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null);
|
||||
assertThat(classifiedDoc.getEntities()).hasSize(1); // one page
|
||||
assertThat(classifiedDoc.getEntities().get(1)).hasSize(7);// 3 author cells, 1 address, 1 Y and 2 N entities
|
||||
}
|
||||
@@ -161,20 +163,20 @@ public class EntityRedactionServiceTest {
|
||||
DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
|
||||
.entries(Arrays.asList("Casey, H.W.", "O’Loughlin, C.K.", "Salamon, C.M.", "Smith, S.H."))
|
||||
.build();
|
||||
when(dictionaryClient.getVersion()).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE)).thenReturn(dictionaryResponse);
|
||||
when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
|
||||
DictionaryResponse addressResponse = DictionaryResponse.builder()
|
||||
.entries(Collections.singletonList("Toxigenics, Inc., Decatur, IL 62526, USA"))
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE)).thenReturn(addressResponse);
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID)).thenReturn(addressResponse);
|
||||
DictionaryResponse sponsorResponse = DictionaryResponse.builder()
|
||||
.entries(Collections.emptyList())
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(SPONSOR_CODE)).thenReturn(sponsorResponse);
|
||||
when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_RULESET_ID)).thenReturn(sponsorResponse);
|
||||
|
||||
try (PDDocument pdDocument = PDDocument.load(new ByteArrayInputStream(redactionRequest.getDocument()))) {
|
||||
Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
|
||||
entityRedactionService.processDocument(classifiedDoc, null);
|
||||
entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null);
|
||||
assertThat(classifiedDoc.getEntities()).hasSize(1); // one page
|
||||
assertThat(classifiedDoc.getEntities().get(1)).hasSize(7);// 3 author cells, 1 address, 1 Y and 2 N entities
|
||||
}
|
||||
@@ -186,22 +188,22 @@ public class EntityRedactionServiceTest {
|
||||
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/Cyprodinil/40 Cyprodinil - EU AIR3 - LCA Section 1" +
|
||||
" Supplement - Identity of the active substance - Reference list.pdf");
|
||||
when(dictionaryClient.getVersion()).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
|
||||
.entries(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_author.txt")))
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE)).thenReturn(dictionaryResponse);
|
||||
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
|
||||
DictionaryResponse addressResponse = DictionaryResponse.builder()
|
||||
.entries(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_address.txt")))
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE)).thenReturn(addressResponse);
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID)).thenReturn(addressResponse);
|
||||
DictionaryResponse sponsorResponse = DictionaryResponse.builder()
|
||||
.entries(Collections.emptyList())
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(SPONSOR_CODE)).thenReturn(sponsorResponse);
|
||||
when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_RULESET_ID)).thenReturn(sponsorResponse);
|
||||
try (PDDocument pdDocument = PDDocument.load(pdfFileResource.getInputStream())) {
|
||||
Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
|
||||
entityRedactionService.processDocument(classifiedDoc, null);
|
||||
entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null);
|
||||
assertThat(classifiedDoc.getEntities()
|
||||
.entrySet()
|
||||
.stream()
|
||||
@@ -211,7 +213,7 @@ public class EntityRedactionServiceTest {
|
||||
"the plant protection product.pdf");
|
||||
try (PDDocument pdDocument = PDDocument.load(pdfFileResource.getInputStream())) {
|
||||
Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
|
||||
entityRedactionService.processDocument(classifiedDoc, null);
|
||||
entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null);
|
||||
assertThat(classifiedDoc.getEntities()
|
||||
.entrySet()
|
||||
.stream()
|
||||
@@ -223,22 +225,22 @@ public class EntityRedactionServiceTest {
|
||||
public void testFalsePositiveInWrongCell() throws IOException {
|
||||
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Row With Ambiguous Redaction.pdf");
|
||||
when(dictionaryClient.getVersion()).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
|
||||
.entries(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_author.txt")))
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE)).thenReturn(dictionaryResponse);
|
||||
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
|
||||
DictionaryResponse addressResponse = DictionaryResponse.builder()
|
||||
.entries(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_address.txt")))
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE)).thenReturn(addressResponse);
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID)).thenReturn(addressResponse);
|
||||
DictionaryResponse sponsorResponse = DictionaryResponse.builder()
|
||||
.entries(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_sponsor.txt")))
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(SPONSOR_CODE)).thenReturn(sponsorResponse);
|
||||
when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_RULESET_ID)).thenReturn(sponsorResponse);
|
||||
try (PDDocument pdDocument = PDDocument.load(pdfFileResource.getInputStream())) {
|
||||
Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
|
||||
entityRedactionService.processDocument(classifiedDoc, null);
|
||||
entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null);
|
||||
assertThat(classifiedDoc.getEntities()).hasSize(1); // one page
|
||||
assertThat(classifiedDoc.getEntities().get(1).stream()
|
||||
.filter(entity -> entity.getMatchedRule() == 9)
|
||||
@@ -287,27 +289,27 @@ public class EntityRedactionServiceTest {
|
||||
"\"Reg (EC) No 1107/2009 Art. 63 (2g)\");\n" +
|
||||
" section.redactBetween(\"Contact:\", \"Tel.:\", \"address\", 6,true, \"Applicant information was found\", \"Reg (EC) No 1107/2009 Art. 63 (2g)\");\n" +
|
||||
" end";
|
||||
when(rulesClient.getVersion()).thenReturn(RULES_VERSION.incrementAndGet());
|
||||
when(rulesClient.getRules()).thenReturn(new RulesResponse(tableRules));
|
||||
droolsExecutionService.updateRules();
|
||||
when(rulesClient.getVersion(TEST_RULESET_ID)).thenReturn(RULES_VERSION.incrementAndGet());
|
||||
when(rulesClient.getRules(TEST_RULESET_ID)).thenReturn(new RulesResponse(tableRules));
|
||||
droolsExecutionService.updateRules(TEST_RULESET_ID);
|
||||
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/Applicant Producer Table.pdf");
|
||||
when(dictionaryClient.getVersion()).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
|
||||
.entries(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_author.txt")))
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE)).thenReturn(dictionaryResponse);
|
||||
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
|
||||
DictionaryResponse addressResponse = DictionaryResponse.builder()
|
||||
.entries(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_address.txt")))
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE)).thenReturn(addressResponse);
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID)).thenReturn(addressResponse);
|
||||
DictionaryResponse sponsorResponse = DictionaryResponse.builder()
|
||||
.entries(Collections.emptyList())
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(SPONSOR_CODE)).thenReturn(sponsorResponse);
|
||||
when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_RULESET_ID)).thenReturn(sponsorResponse);
|
||||
try (PDDocument pdDocument = PDDocument.load(pdfFileResource.getInputStream())) {
|
||||
Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
|
||||
entityRedactionService.processDocument(classifiedDoc, null);
|
||||
entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null);
|
||||
assertThat(classifiedDoc.getEntities()).hasSize(1); // one page
|
||||
assertThat(classifiedDoc.getEntities().get(1).stream()
|
||||
.filter(entity -> entity.getMatchedRule() == 6)
|
||||
@@ -328,27 +330,27 @@ public class EntityRedactionServiceTest {
|
||||
"Section(searchText.toLowerCase().contains(\"batches produced at\"))\n" + " then\n" + " section" +
|
||||
".redactIfPrecededBy(\"batches produced at\", \"sponsor\", 11, \"Redacted because it represents a " +
|
||||
"sponsor company\", \"Reg (EC) No 1107/2009 Art. 63 (2g)\");\n" + " end";
|
||||
when(rulesClient.getVersion()).thenReturn(RULES_VERSION.incrementAndGet());
|
||||
when(rulesClient.getRules()).thenReturn(new RulesResponse(tableRules));
|
||||
droolsExecutionService.updateRules();
|
||||
when(rulesClient.getVersion(TEST_RULESET_ID)).thenReturn(RULES_VERSION.incrementAndGet());
|
||||
when(rulesClient.getRules(TEST_RULESET_ID)).thenReturn(new RulesResponse(tableRules));
|
||||
droolsExecutionService.updateRules(TEST_RULESET_ID);
|
||||
|
||||
ClassPathResource pdfFileResource = new ClassPathResource("files/Minimal Examples/batches_new_line.pdf");
|
||||
when(dictionaryClient.getVersion()).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
DictionaryResponse addressResponse = DictionaryResponse.builder()
|
||||
.entries(Collections.emptyList())
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE)).thenReturn(addressResponse);
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID)).thenReturn(addressResponse);
|
||||
DictionaryResponse authorResponse = DictionaryResponse.builder()
|
||||
.entries(Collections.emptyList())
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE)).thenReturn(authorResponse);
|
||||
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(authorResponse);
|
||||
DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
|
||||
.entries(new ArrayList<>(ResourceLoader.load("dictionaries/CBI_sponsor.txt")))
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(SPONSOR_CODE)).thenReturn(dictionaryResponse);
|
||||
when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
|
||||
try (PDDocument pdDocument = PDDocument.load(pdfFileResource.getInputStream())) {
|
||||
Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
|
||||
entityRedactionService.processDocument(classifiedDoc, null);
|
||||
entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null);
|
||||
assertThat(classifiedDoc.getEntities()).hasSize(1); // one page
|
||||
assertThat(classifiedDoc.getEntities().get(1).stream()
|
||||
.filter(entity -> entity.getMatchedRule() == 11)
|
||||
@@ -367,20 +369,20 @@ public class EntityRedactionServiceTest {
|
||||
.entries(Arrays.asList("Bissig R.", "Thanei P."))
|
||||
.build();
|
||||
|
||||
when(dictionaryClient.getVersion()).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE)).thenReturn(dictionaryResponse);
|
||||
when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
|
||||
DictionaryResponse addressResponse = DictionaryResponse.builder()
|
||||
.entries(Collections.singletonList("Novartis Crop Protection AG, Basel, Switzerland"))
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE)).thenReturn(addressResponse);
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID)).thenReturn(addressResponse);
|
||||
|
||||
DictionaryResponse sponsorResponse = DictionaryResponse.builder()
|
||||
.entries(Collections.emptyList())
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(SPONSOR_CODE)).thenReturn(sponsorResponse);
|
||||
when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_RULESET_ID)).thenReturn(sponsorResponse);
|
||||
try (PDDocument pdDocument = PDDocument.load(pdfFileResource.getInputStream())) {
|
||||
Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
|
||||
entityRedactionService.processDocument(classifiedDoc, null);
|
||||
entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null);
|
||||
assertThat(classifiedDoc.getEntities()).hasSize(2); // two pages
|
||||
assertThat(classifiedDoc.getEntities().get(1).stream().filter(entity -> entity.getMatchedRule() == 9).count()).isEqualTo(8);
|
||||
assertThat(classifiedDoc.getEntities().get(2).stream().filter(entity -> entity.getMatchedRule() == 9).count()).isEqualTo(5); // 2 names, 1 address, 2 Y
|
||||
@@ -392,16 +394,16 @@ public class EntityRedactionServiceTest {
|
||||
.entries(Arrays.asList("Tribolet, R.", "Muir, G.", "Kühne-Thu, H.", "Close, C."))
|
||||
.build();
|
||||
|
||||
when(dictionaryClient.getVersion()).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE)).thenReturn(dictionaryResponse);
|
||||
when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
|
||||
addressResponse = DictionaryResponse.builder()
|
||||
.entries(Collections.singletonList("Novartis Crop Protection AG, Basel, Switzerland"))
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE)).thenReturn(addressResponse);
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID)).thenReturn(addressResponse);
|
||||
|
||||
try (PDDocument pdDocument = PDDocument.load(pdfFileResource.getInputStream())) {
|
||||
Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
|
||||
entityRedactionService.processDocument(classifiedDoc, null);
|
||||
entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null);
|
||||
assertThat(classifiedDoc.getEntities()).hasSize(1); // one page
|
||||
assertThat(classifiedDoc.getEntities().get(1).stream().filter(entity -> entity.getMatchedRule() == 9).count()).isEqualTo(3);
|
||||
assertThat(classifiedDoc.getEntities().get(1).stream().filter(entity -> entity.getMatchedRule() == 8).count()).isEqualTo(9);
|
||||
@@ -418,20 +420,20 @@ public class EntityRedactionServiceTest {
|
||||
.entries(Collections.singletonList("Aldershof S."))
|
||||
.build();
|
||||
|
||||
when(dictionaryClient.getVersion()).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE)).thenReturn(dictionaryResponse);
|
||||
when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
|
||||
DictionaryResponse addressResponse = DictionaryResponse.builder()
|
||||
.entries(Collections.singletonList("Novartis Crop Protection AG, Basel, Switzerland"))
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE)).thenReturn(addressResponse);
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID)).thenReturn(addressResponse);
|
||||
|
||||
DictionaryResponse sponsorResponse = DictionaryResponse.builder()
|
||||
.entries(Collections.emptyList())
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(SPONSOR_CODE)).thenReturn(sponsorResponse);
|
||||
when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_RULESET_ID)).thenReturn(sponsorResponse);
|
||||
try (PDDocument pdDocument = PDDocument.load(pdfFileResource.getInputStream())) {
|
||||
Document classifiedDoc = pdfSegmentationService.parseDocument(pdDocument);
|
||||
entityRedactionService.processDocument(classifiedDoc, null);
|
||||
entityRedactionService.processDocument(classifiedDoc, TEST_RULESET_ID, null);
|
||||
assertThat(classifiedDoc.getEntities()).hasSize(1); // one page
|
||||
assertThat(classifiedDoc.getEntities().get(1).stream().filter(entity -> entity.getMatchedRule() == 8).count()).isEqualTo(6);
|
||||
}
|
||||
@@ -463,27 +465,27 @@ public class EntityRedactionServiceTest {
|
||||
" 1107/2009 Art. 63 (2g)\");\n" +
|
||||
" section.highlightCell(\"Vertebrate study Y/N\", 9, \"must_redact\");\n" +
|
||||
" end";
|
||||
when(rulesClient.getVersion()).thenReturn(RULES_VERSION.incrementAndGet());
|
||||
when(rulesClient.getRules()).thenReturn(new RulesResponse(tableRules));
|
||||
when(rulesClient.getVersion(TEST_RULESET_ID)).thenReturn(RULES_VERSION.incrementAndGet());
|
||||
when(rulesClient.getRules(TEST_RULESET_ID)).thenReturn(new RulesResponse(tableRules));
|
||||
TypeResponse typeResponse = TypeResponse.builder()
|
||||
.types(Arrays.asList(
|
||||
TypeResult.builder().type(AUTHOR_CODE).hexColor("#ffff00").build(),
|
||||
TypeResult.builder().type(ADDRESS_CODE).hexColor("#ff00ff").build(),
|
||||
TypeResult.builder().type(SPONSOR_CODE).hexColor("#00ffff").build()))
|
||||
TypeResult.builder().ruleSetId(TEST_RULESET_ID).type(AUTHOR_CODE).hexColor("#ffff00").build(),
|
||||
TypeResult.builder().ruleSetId(TEST_RULESET_ID).type(ADDRESS_CODE).hexColor("#ff00ff").build(),
|
||||
TypeResult.builder().ruleSetId(TEST_RULESET_ID).type(SPONSOR_CODE).hexColor("#00ffff").build()))
|
||||
.build();
|
||||
when(dictionaryClient.getVersion()).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
when(dictionaryClient.getAllTypes()).thenReturn(typeResponse);
|
||||
when(dictionaryClient.getVersion(TEST_RULESET_ID)).thenReturn(DICTIONARY_VERSION.incrementAndGet());
|
||||
when(dictionaryClient.getAllTypes(TEST_RULESET_ID)).thenReturn(typeResponse);
|
||||
|
||||
// Default empty return to prevent NPEs
|
||||
DictionaryResponse dictionaryResponse = DictionaryResponse.builder()
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE)).thenReturn(dictionaryResponse);
|
||||
when(dictionaryClient.getDictionaryForType(AUTHOR_CODE, TEST_RULESET_ID)).thenReturn(dictionaryResponse);
|
||||
DictionaryResponse addressResponse = DictionaryResponse.builder()
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE)).thenReturn(addressResponse);
|
||||
when(dictionaryClient.getDictionaryForType(ADDRESS_CODE, TEST_RULESET_ID)).thenReturn(addressResponse);
|
||||
DictionaryResponse sponsorResponse = DictionaryResponse.builder()
|
||||
.build();
|
||||
when(dictionaryClient.getDictionaryForType(SPONSOR_CODE)).thenReturn(sponsorResponse);
|
||||
when(dictionaryClient.getDictionaryForType(SPONSOR_CODE, TEST_RULESET_ID)).thenReturn(sponsorResponse);
|
||||
|
||||
Colors colors = new Colors();
|
||||
colors.setDefaultColor("#acfc00");
|
||||
@@ -491,7 +493,7 @@ public class EntityRedactionServiceTest {
|
||||
colors.setRequestAdd("#04b093");
|
||||
colors.setRequestRemove("#04b093");
|
||||
|
||||
when(dictionaryClient.getColors()).thenReturn(colors);
|
||||
when(dictionaryClient.getColors(TEST_RULESET_ID)).thenReturn(colors);
|
||||
}
|
||||
|
||||
|
||||
@@ -515,7 +517,7 @@ public class EntityRedactionServiceTest {
|
||||
|
||||
|
||||
@Test
|
||||
public void testAuthorSplitting(){
|
||||
public void testAuthorSplitting() {
|
||||
|
||||
String word = "Porch JR, " + "Kendall TZ, " + "Krueger HO";
|
||||
|
||||
@@ -529,8 +531,8 @@ public class EntityRedactionServiceTest {
|
||||
allMatches.add(matcher.group());
|
||||
}
|
||||
|
||||
for(String name: allMatches) {
|
||||
if(name.length() >= 3) {
|
||||
for (String name : allMatches) {
|
||||
if (name.length() >= 3) {
|
||||
System.out.println(name);
|
||||
// dictionaryService.addToLocalDictionary(type, name);
|
||||
}
|
||||
|
||||
Reference in New Issue
Block a user