Compare commits

..
Author SHA1 Message Date
Andrei Isvoran 97291ffcae test publish stuff 2024-03-04 09:55:52 +02:00
Kevin Tumma 9a9867e739 Update .gitlab-ci.yml 2024-03-01 14:13:31 +01:00
Andrei Isvoran aa20a5c201 disable test 2024-03-01 14:56:14 +02:00
Andrei Isvoran 600394c366 change gitlab-ci 2024-03-01 14:51:59 +02:00
Andrei Isvoran 8fd9855b2c add public to it 2024-03-01 12:11:53 +02:00
Andrei Isvoran 2a8f1ecdd2 add public to it 2024-03-01 12:05:11 +02:00
Andrei Isvoran 6202e95ad8 change to pages 2024-03-01 11:59:26 +02:00
Andrei Isvoran b1fee50718 change to pages 2024-03-01 11:53:27 +02:00
Andrei Isvoran 3a59bff246 add publish keyword 2024-03-01 11:49:19 +02:00
Andrei Isvoran 57683d49b6 fix path 2024-03-01 11:48:06 +02:00
Andrei Isvoran 0fd01fa1c3 add dependsOn(delombok) 2024-03-01 11:44:37 +02:00
Andrei Isvoran 6d66e5dac3 add sleep 2024-03-01 11:24:59 +02:00
Andrei Isvoran 446c3e56a8 draft 2024-03-01 11:23:45 +02:00
Andrei Isvoran daab1f1b0a draft 2024-03-01 10:10:24 +02:00
Andrei Isvoran af70705250 draft 2024-03-01 10:06:55 +02:00
Andrei Isvoran f29f8626e9 draft 2024-03-01 09:59:31 +02:00
Andrei Isvoran 940e6e7b42 draft 2024-03-01 09:52:13 +02:00
Andrei Isvoran c08ad75893 draft 2024-03-01 09:49:55 +02:00
Andrei Isvoran b8d9b101c9 draft 2024-03-01 09:47:28 +02:00
Andrei Isvoran a1ea354225 draft 2024-03-01 09:39:53 +02:00
Andrei Isvoran e9f516580e draft 2024-02-29 17:48:02 +02:00
Andrei Isvoran b006b8c1ab draft 2024-02-29 17:36:31 +02:00
Andrei Isvoran 78912adeb6 draft 2024-02-29 17:33:23 +02:00
Andrei Isvoran 9bbff158c0 draft 2024-02-29 17:28:33 +02:00
Andrei Isvoran 6e0b343de3 draft 2024-02-29 17:21:39 +02:00
Andrei Isvoran 5bc9b60623 draft 2024-02-29 17:16:09 +02:00
Andrei Isvoran e8b32681ce draft 2024-02-29 16:40:59 +02:00
Andrei Isvoran d29b6bf816 draft 2024-02-29 16:39:09 +02:00
Corina Olariu b6ad1b5e91 Merge branch 'RED-8590' into 'master'
RED-8590 - Missing reason for added CBI Address, recategorized LOGO and signature

Closes RED-8590

See merge request redactmanager/redaction-service!293
2024-02-29 13:17:56 +01:00
Corina Olariu 5f961b0f99 RED-8590 - Missing reason for added CBI Address, recategorized LOGO and signature 2024-02-29 13:17:56 +01:00
Andrei Isvoran 89dea4138a Merge branch 'RED-8586' into 'master'
RED-8586 - Fix confidentiality rules

Closes RED-8586

See merge request redactmanager/redaction-service!294
2024-02-29 12:58:23 +01:00
Andrei Isvoran 4fb8b10429 RED-8586 - Fix confidentiality rules 2024-02-29 12:58:23 +01:00
Yannik Hampe f09a4e4d42 Merge branch 'RED-8481-rules' into 'master'
RED-8481: use visual layout parser for signature extraction

Closes RED-8481

See merge request redactmanager/redaction-service!296
2024-02-29 09:19:41 +01:00
Yannik Hampe ab5dc2f46b RED-8481: use visual layout parser for signature extraction 2024-02-29 09:19:41 +01:00
Kilian Schüttler b50899e18c Merge branch 'RED-8615' into 'master'
RED-8615: Revert and change the current behaviour of manualChanges

Closes RED-8615

See merge request redactmanager/redaction-service!291
2024-02-28 13:12:40 +01:00
Kilian Schüttler 30d0fd7def RED-8615: Revert and change the current behaviour of manualChanges 2024-02-28 13:12:40 +01:00
Yannik Hampe 23b8d164d2 Merge branch 'RED-8481-rules' into 'master'
RED-8481: use visual layout parser for signature extraction

Closes RED-8481

See merge request redactmanager/redaction-service!290
2024-02-28 09:04:55 +01:00
Yannik Hampe 0bfd92846f RED-8481: use visual layout parser for signature extraction 2024-02-28 09:04:55 +01:00
Kilian Schüttler ca3bb600f3 Merge branch 'RED-7384' into 'master'
More migration fixes

Closes RED-7384

See merge request redactmanager/redaction-service!280
2024-02-27 10:04:27 +01:00
Kilian Schüttler 5ffef504e4 More migration fixes 2024-02-27 10:04:27 +01:00
Yannik Hampe 94b7b741f8 Merge branch 'RED-8481' into 'master'
RED-8481: use visual layout parser for signature extraction

Closes RED-8481

See merge request redactmanager/redaction-service!289
2024-02-27 08:38:03 +01:00
Yannik Hampe 79ac1105f6 RED-8481: use visual layout parser for signature extraction 2024-02-27 08:38:03 +01:00
Kilian Schüttler 87f74c31c6 Merge branch 'hotfix' into 'master'
hotfix: streamEntitiesWhereRowContainsEntityOfType is broken

See merge request redactmanager/redaction-service!285
2024-02-23 14:30:48 +01:00
Kilian Schüttler 5f67efc8c7 hotfix: streamEntitiesWhereRowContainsEntityOfType is broken 2024-02-23 14:30:48 +01:00
Corina Olariu fd3fe87d90 Merge branch 'RED-8589' into 'master'
RED-8589 - Add "MANUAL" engine to all annotations that has entries in manualChanges

Closes RED-8589

See merge request redactmanager/redaction-service!282
2024-02-23 10:50:05 +01:00
Corina Olariu a85197cda4 RED-8589 - Add "MANUAL" engine to all annotations that has entries in manualChanges 2024-02-23 10:50:05 +01:00
Maverick Studer 05884533d1 Merge branch 'RED-8607' into 'master'
RED-8607: Higher rank hint removed if overlaps lower rank redaction

Closes RED-8607

See merge request redactmanager/redaction-service!283
2024-02-22 15:53:31 +01:00
Maverick Studer 310daa8060 RED-8607: Higher rank hint removed if overlaps lower rank redaction 2024-02-22 15:53:31 +01:00
Andrei Isvoran 7b798ae543 Merge branch 'RED-8588' into 'master'
RED-8588 - Fix ADD_TO_DICT

Closes RED-8588

See merge request redactmanager/redaction-service!281
2024-02-20 14:33:32 +01:00
Andrei Isvoran 3143f87587 RED-8588 - Fix ADD_TO_DICT 2024-02-20 14:33:31 +01:00
Corina Olariu 5fb3626208 Merge branch 'RED-7886' into 'master'
RED-7886 - Endpoint for rule validation

Closes RED-7886

See merge request redactmanager/redaction-service!278
2024-02-20 07:57:48 +01:00
Corina Olariu fb2d1fb2f2 RED-7886 - Endpoint for rule validation 2024-02-20 07:57:48 +01:00
Ali Oezyetimoglu cadbf6f275 Merge branch 'RED-8480' into 'master'
RED-8480: updated persistence service version and added legalBasis in ManualChangeOverwrite

Closes RED-8480

See merge request redactmanager/redaction-service!279
2024-02-16 14:58:27 +01:00
Ali Oezyetimoglu ea5d315dc3 RED-8480: updated persistence service version and added legalBasis in ManualChangeOverwrite 2024-02-16 14:58:27 +01:00
45 changed files with 2846 additions and 1284 deletions
+13
View File
@@ -21,3 +21,16 @@ deploy:
- if: $CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH
- if: $CI_COMMIT_BRANCH =~ /^release/
- if: $CI_COMMIT_TAG
pages:
stage: build
tags:
- dind
script:
- echo "Generating Javadoc..."
- gradle generateJavaDoc -PjavadocDestinationDir="javadoc"
- mkdir public
- mv redaction-service-v1/redaction-service-server-v1/javadoc/* public/
artifacts:
paths:
- public
@@ -7,7 +7,7 @@ description = "redaction-service-api-v1"
dependencies {
implementation("org.springframework:spring-web:6.0.12")
implementation("com.iqser.red.service:persistence-service-internal-api-v1:2.338.0")
implementation("com.iqser.red.service:persistence-service-internal-api-v1:2.351.0")
}
publishing {
@@ -0,0 +1,20 @@
package com.iqser.red.service.redaction.v1.model;
import lombok.AccessLevel;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.NoArgsConstructor;
import lombok.experimental.FieldDefaults;
@Data
@Builder
@AllArgsConstructor
@NoArgsConstructor
@FieldDefaults(level = AccessLevel.PRIVATE)
public class DroolsSyntaxDeprecatedWarnings {
Integer line;
Integer column;
String message;
}
@@ -19,6 +19,8 @@ public class DroolsSyntaxValidation {
@Builder.Default
List<DroolsSyntaxErrorMessage> droolsSyntaxErrorMessages = new LinkedList<>();
@Builder.Default
List<DroolsSyntaxDeprecatedWarnings> droolsSyntaxDeprecatedWarnings = new LinkedList<>();
public void addErrorMessage(int line, int column, String message) {
@@ -12,11 +12,11 @@ plugins {
description = "redaction-service-server-v1"
val layoutParserVersion = "0.89.3"
val layoutParserVersion = "0.94.0"
val jacksonVersion = "2.15.2"
val droolsVersion = "9.44.0.Final"
val pdfBoxVersion = "3.0.0"
val persistenceServiceVersion = "2.349.4"
val persistenceServiceVersion = "2.360.0"
val springBootStarterVersion = "3.1.5"
configurations {
@@ -60,6 +60,8 @@ dependencies {
implementation("net.logstash.logback:logstash-logback-encoder:7.4")
implementation("ch.qos.logback:logback-classic")
implementation("org.reflections:reflections:0.10.2")
testImplementation(project(":rules-management"))
testImplementation("org.apache.pdfbox:pdfbox:${pdfBoxVersion}")
testImplementation("org.apache.pdfbox:pdfbox-tools:${pdfBoxVersion}")
@@ -82,9 +84,6 @@ tasks.test {
maxHeapSize = "1024m"
}
tasks.named<BootBuildImage>("bootBuildImage") {
environment.put("BPE_DELIM_JAVA_TOOL_OPTIONS", " ")
@@ -111,3 +110,40 @@ tasks.named<BootBuildImage>("bootBuildImage") {
tags.set(listOf(dockerTag))
}
}
fun parseDroolsImports(droolsFilePath: String): List<String> {
val imports = mutableListOf<String>()
val importPattern = Regex("^import\\s+(com\\.iqser\\.red\\.service\\.redaction\\.v1\\.[\\w.]+);")
val desiredPrefix = "com.iqser.red.service.redaction.v1"
File(droolsFilePath).forEachLine { line ->
importPattern.find(line)?.let { matchResult ->
val importPath = matchResult.groupValues[1].trim()
if (importPath.startsWith(desiredPrefix)) {
val formattedPath = importPath.replace('.', '/')
imports.add("$formattedPath.java")
}
}
}
return imports
}
val droolsImports = parseDroolsImports("redaction-service-v1/redaction-service-server-v1/src/main/resources/drools/all_rules_documine.drl")
tasks.register("generateJavaDoc", Javadoc::class) {
dependsOn("compileJava")
dependsOn("delombok")
classpath = project.sourceSets["main"].runtimeClasspath
source = fileTree("${buildDir}/generated/sources/delombok/java/main") {
include(droolsImports)
}
destinationDir = file(project.findProperty("javadocDestinationDir")?.toString() ?: "")
options.memberLevel = JavadocMemberLevel.PUBLIC
(options as StandardJavadocDocletOptions).apply {
header = "Redaction Service ${project.version}"
footer = "Redaction Service ${project.version}"
title = "API Documentation for Redaction Service ${project.version}"
}
}
@@ -46,10 +46,18 @@ public class Application {
return new TimedAspect(registry);
}
@Bean
public DictionaryMergeService dictionaryMergeService() {
return new DictionaryMergeService();
}
@Bean(initMethod = "findDeprecatedMethods")
public DeprecatedElementsFinder deprecatedElementsFinder() {
return new DeprecatedElementsFinder();
}
}
@@ -0,0 +1,108 @@
package com.iqser.red.service.redaction.v1.server;
import static java.util.stream.Collectors.groupingBy;
import java.lang.reflect.Method;
import java.lang.reflect.Type;
import java.util.Arrays;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.stream.Collectors;
import org.reflections.Reflections;
import org.reflections.scanners.Scanners;
import org.reflections.util.ConfigurationBuilder;
import com.iqser.red.service.redaction.v1.server.model.dictionary.SearchImplementation;
import lombok.Getter;
import lombok.extern.slf4j.Slf4j;
@Slf4j
public class DeprecatedElementsFinder {
public static final String PACKAGE_NAME = "com.iqser.red.service.redaction.v1.server";
private Set<Method> deprecatedMethods;
@Getter
private Map<String, String> deprecatedMethodsSignaturesMap;
private Set<Class<?>> deprecatedClasses;
@Getter
private SearchImplementation classesSearchImplementation;
@Getter
private SearchImplementation methodsSearchImplementation;
public void findDeprecatedMethods() {
deprecatedMethods = new HashSet<>();
deprecatedClasses = new HashSet<>();
deprecatedMethodsSignaturesMap = new HashMap<>();
Reflections reflections = new Reflections(new ConfigurationBuilder().forPackage(PACKAGE_NAME)
.setExpandSuperTypes(true)
.setScanners(Scanners.MethodsAnnotated, Scanners.TypesAnnotated, Scanners.SubTypes));
deprecatedMethods = reflections.get(Scanners.MethodsAnnotated.with(Deprecated.class).as(Method.class));
deprecatedClasses = reflections.get(Scanners.TypesAnnotated.with(Deprecated.class).asClass());
if (!deprecatedClasses.isEmpty()) {
deprecatedClasses.forEach(deprecatedType -> deprecatedMethods.addAll(Arrays.stream(deprecatedType.getDeclaredMethods())
.collect(Collectors.toSet())));
classesSearchImplementation = new SearchImplementation(deprecatedClasses.stream()
.map(Class::getName)
.collect(Collectors.toSet()), false);
}
if (!deprecatedMethods.isEmpty()) {
methodsSearchImplementation = new SearchImplementation(deprecatedMethods.stream()
.map(Method::getName)
.collect(Collectors.toSet()), false);
deprecatedMethodsSignaturesMap = new HashMap<>();
Map<String, List<Method>> deprecatedMethodsNameMap = deprecatedMethods.stream()
.collect(groupingBy(Method::getName));
for (String deprecatedMethod : deprecatedMethodsNameMap.keySet()) {
deprecatedMethodsSignaturesMap.computeIfAbsent(deprecatedMethod,
key -> deprecatedMethodsNameMap.get(deprecatedMethod)
.stream()
.map(this::getMethodSignature)
.collect(Collectors.joining("\n")));
}
}
log.info("For package: {} found deprecated classes {} deprecated methods {}", PACKAGE_NAME, deprecatedClasses.size(), deprecatedMethods.size());
}
public Set<Method> getDeprecatedMethods() {
if (this.deprecatedMethods == null) {
findDeprecatedMethods();
}
return this.deprecatedMethods;
}
public Set<Class<?>> getDeprecatedClasses() {
if (this.deprecatedClasses == null) {
findDeprecatedMethods();
}
return this.deprecatedClasses;
}
private String getMethodSignature(Method method) {
String methodName = method.getName();
String parameterTypes = Arrays.stream(method.getGenericParameterTypes())
.map(Type::getTypeName)
.collect(Collectors.joining(", "));
return method.getGenericReturnType() + " " + methodName + "(" + parameterTypes + ")";
}
}
@@ -27,12 +27,12 @@ import lombok.experimental.FieldDefaults;
public class ManualChangeOverwrite {
private static final Map<Class<? extends BaseAnnotation>, String> MANUAL_CHANGE_DESCRIPTIONS = Map.of(//
ManualRedactionEntry.class, "created by manual change", //
ManualLegalBasisChange.class, "legal basis was manually changed", //
ManualResizeRedaction.class, "resized by manual override", //
ManualForceRedaction.class, "forced by manual override", //
IdRemoval.class, "removed by manual override", //
ManualRecategorization.class, "recategorized by manual override");
ManualRedactionEntry.class, "created by manual change", //
ManualLegalBasisChange.class, "legal basis was manually changed", //
ManualResizeRedaction.class, "resized by manual override", //
ManualForceRedaction.class, "forced by manual override", //
IdRemoval.class, "removed by manual override", //
ManualRecategorization.class, "recategorized by manual override");
List<BaseAnnotation> manualChanges = new LinkedList<>();
boolean changed;
@@ -80,7 +80,8 @@ public class ManualChangeOverwrite {
manualChanges.sort(Comparator.comparing(BaseAnnotation::getRequestDate));
updateFields(manualChanges);
// make list unmodifiable.
return manualChanges.stream().toList();
return manualChanges.stream()
.toList();
}
@@ -121,14 +122,18 @@ public class ManualChangeOverwrite {
resized = true;
// This is only for not found Manual Entities.
value = manualResizeRedaction.getValue();
positions = manualResizeRedaction.getPositions().stream().map(RectangleWithPage::fromAnnotationRectangle).toList();
positions = manualResizeRedaction.getPositions()
.stream()
.map(RectangleWithPage::fromAnnotationRectangle)
.toList();
}
if (manualChange instanceof ManualRecategorization recategorization) {
// recategorization logic happens in ManualChangesApplicationService.
recategorized = true;
// this is only relevant for ManualEntities. Image and TextEntity is recategorized in the ManualChangesApplicationService.
type = recategorization.getType();
if (recategorization.getLegalBasis() != null && !recategorization.getLegalBasis().isEmpty()) {
legalBasis = recategorization.getLegalBasis();
}
}
descriptions.add(MANUAL_CHANGE_DESCRIPTIONS.get(manualChange.getClass()));
@@ -14,6 +14,7 @@ import com.iqser.red.service.redaction.v1.server.model.document.DocumentTree;
import com.iqser.red.service.redaction.v1.server.model.document.entity.TextEntity;
import com.iqser.red.service.redaction.v1.server.model.document.textblock.TextBlock;
import com.iqser.red.service.redaction.v1.server.model.document.textblock.TextBlockCollector;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.LayoutEngine;
import lombok.AccessLevel;
import lombok.AllArgsConstructor;
@@ -33,6 +34,8 @@ public class Document implements GenericSemanticNode {
@EqualsAndHashCode.Include
List<Integer> treeId = Collections.emptyList();
@Builder.Default
Set<LayoutEngine> engines = new HashSet<>(Set.of(LayoutEngine.ALGORITHM));
Set<Page> pages;
DocumentTree documentTree;
@@ -9,6 +9,7 @@ import java.util.Set;
import com.iqser.red.service.redaction.v1.server.model.document.DocumentTree;
import com.iqser.red.service.redaction.v1.server.model.document.entity.TextEntity;
import com.iqser.red.service.redaction.v1.server.model.document.textblock.TextBlock;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.LayoutEngine;
import lombok.AccessLevel;
import lombok.AllArgsConstructor;
@@ -27,6 +28,8 @@ import lombok.experimental.FieldDefaults;
public class Footer implements GenericSemanticNode {
final static SectionIdentifier sectionIdentifier = SectionIdentifier.empty();
@Builder.Default
Set<LayoutEngine> engines = new HashSet<>(Set.of(LayoutEngine.ALGORITHM));
@EqualsAndHashCode.Include
List<Integer> treeId;
@@ -9,6 +9,7 @@ import java.util.Set;
import com.iqser.red.service.redaction.v1.server.model.document.entity.TextEntity;
import com.iqser.red.service.redaction.v1.server.model.document.DocumentTree;
import com.iqser.red.service.redaction.v1.server.model.document.textblock.TextBlock;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.LayoutEngine;
import lombok.AccessLevel;
import lombok.AllArgsConstructor;
@@ -27,6 +28,8 @@ import lombok.experimental.FieldDefaults;
public class Header implements GenericSemanticNode {
final static SectionIdentifier sectionIdentifier = SectionIdentifier.empty();
@Builder.Default
Set<LayoutEngine> engines = new HashSet<>(Set.of(LayoutEngine.ALGORITHM));
@EqualsAndHashCode.Include
List<Integer> treeId;
@@ -10,6 +10,7 @@ import com.iqser.red.service.redaction.v1.server.model.document.DocumentTree;
import com.iqser.red.service.redaction.v1.server.model.document.entity.TextEntity;
import com.iqser.red.service.redaction.v1.server.model.document.textblock.AtomicTextBlock;
import com.iqser.red.service.redaction.v1.server.model.document.textblock.TextBlock;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.LayoutEngine;
import lombok.AccessLevel;
import lombok.AllArgsConstructor;
@@ -27,6 +28,8 @@ import lombok.experimental.FieldDefaults;
@EqualsAndHashCode(onlyExplicitlyIncluded = true)
public class Headline implements GenericSemanticNode {
@Builder.Default
Set<LayoutEngine> engines = new HashSet<>(Set.of(LayoutEngine.ALGORITHM));
@EqualsAndHashCode.Include
List<Integer> treeId;
TextBlock leafTextBlock;
@@ -18,6 +18,7 @@ import com.iqser.red.service.redaction.v1.server.model.document.entity.MatchedRu
import com.iqser.red.service.redaction.v1.server.model.document.entity.TextEntity;
import com.iqser.red.service.redaction.v1.server.model.document.textblock.TextBlock;
import com.iqser.red.service.redaction.v1.server.model.document.textblock.TextBlockCollector;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.LayoutEngine;
import lombok.AccessLevel;
import lombok.AllArgsConstructor;
@@ -35,6 +36,9 @@ import lombok.experimental.FieldDefaults;
@EqualsAndHashCode(onlyExplicitlyIncluded = true)
public class Image implements GenericSemanticNode, IEntity {
@Builder.Default
Set<LayoutEngine> engines = new HashSet<>(Set.of(LayoutEngine.ALGORITHM));
@EqualsAndHashCode.Include
List<Integer> treeId;
String id;
@@ -94,7 +98,7 @@ public class Image implements GenericSemanticNode, IEntity {
public String type() {
return getManualOverwrite().getType()
.orElse(imageType.toString().toLowerCase(Locale.ENGLISH));
.orElse(imageType.toString());
}
@@ -127,6 +131,32 @@ public class Image implements GenericSemanticNode, IEntity {
}
public boolean mostlyContainedBy(Image image, double containmentThreshold) {
Map<Page, Rectangle2D> bboxImage = image.getBBox();
Map<Page, Rectangle2D> bbox = this.getBBox();
//image needs to be on the same page
if(bboxImage.get(this.page) != null) {
Rectangle2D intersection = bboxImage.get(this.page).createIntersection(bbox.get(this.page));
double calculatedIntersection = intersection.getWidth() * intersection.getHeight();
double area = bbox.get(this.page).getWidth() * bbox.get(this.page).getHeight();
return (calculatedIntersection / area) > containmentThreshold;
}
return false;
}
public boolean mostlyContains(Image image, double containmentThreshold) {
Map<Page, Rectangle2D> bboxImage = image.getBBox();
Map<Page, Rectangle2D> bbox = this.getBBox();
Rectangle2D intersection = bbox.get(this.page).createIntersection(bboxImage.get(this.page));
double calculatedIntersection = intersection.getWidth() * intersection.getHeight();
double area = bbox.get(this.page).getWidth() * bbox.get(this.page).getHeight();
return (area / calculatedIntersection) > containmentThreshold;
}
public int length() {
return 0;
@@ -6,10 +6,22 @@ public enum ImageType {
LOGO,
FORMULA,
SIGNATURE,
OTHER,
OTHER {
@Override
public String toString() {
return "image";
}
},
OCR;
public String toString() {
return name().toLowerCase(Locale.ENGLISH);
}
public static ImageType fromString(String imageType) {
return switch (imageType.toLowerCase(Locale.ROOT)) {
@@ -9,6 +9,7 @@ import java.util.Set;
import com.iqser.red.service.redaction.v1.server.model.document.DocumentTree;
import com.iqser.red.service.redaction.v1.server.model.document.entity.TextEntity;
import com.iqser.red.service.redaction.v1.server.model.document.textblock.TextBlock;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.LayoutEngine;
import lombok.AccessLevel;
import lombok.AllArgsConstructor;
@@ -24,6 +25,9 @@ import lombok.experimental.FieldDefaults;
@EqualsAndHashCode(onlyExplicitlyIncluded = true)
public class Paragraph implements GenericSemanticNode {
@Builder.Default
Set<LayoutEngine> engines = new HashSet<>(Set.of(LayoutEngine.ALGORITHM));
@EqualsAndHashCode.Include
List<Integer> treeId;
TextBlock leafTextBlock;
@@ -10,12 +10,14 @@ import com.iqser.red.service.redaction.v1.server.model.document.entity.TextEntit
import com.iqser.red.service.redaction.v1.server.model.document.DocumentTree;
import com.iqser.red.service.redaction.v1.server.model.document.textblock.TextBlock;
import com.iqser.red.service.redaction.v1.server.model.document.textblock.TextBlockCollector;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.LayoutEngine;
import lombok.AccessLevel;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Data;
import lombok.EqualsAndHashCode;
import lombok.RequiredArgsConstructor;
import lombok.experimental.FieldDefaults;
import lombok.extern.slf4j.Slf4j;
@@ -26,6 +28,7 @@ import lombok.extern.slf4j.Slf4j;
@FieldDefaults(level = AccessLevel.PRIVATE)
@EqualsAndHashCode(onlyExplicitlyIncluded = true)
public class Section implements GenericSemanticNode {
@EqualsAndHashCode.Include
List<Integer> treeId;
@@ -37,6 +40,9 @@ public class Section implements GenericSemanticNode {
Map<Page, Rectangle2D> bBoxCache;
@Builder.Default
Set<LayoutEngine> engines = new HashSet<>(Set.of(LayoutEngine.ALGORITHM));
@Override
public NodeType getType() {
@@ -22,6 +22,7 @@ import com.iqser.red.service.redaction.v1.server.model.document.textblock.TextBl
import com.iqser.red.service.redaction.v1.server.service.document.NodeVisitor;
import com.iqser.red.service.redaction.v1.server.utils.RectangleTransformations;
import com.iqser.red.service.redaction.v1.server.utils.RedactionSearchUtility;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.LayoutEngine;
public interface SemanticNode {
@@ -356,6 +357,13 @@ public interface SemanticNode {
return getTextBlock().getSearchText().contains(string);
}
Set<LayoutEngine> getEngines();
default void addEngine(LayoutEngine engine) {
getEngines().add(engine);
}
/**
* Checks whether this SemanticNode contains all the provided Strings.
@@ -554,7 +562,6 @@ public interface SemanticNode {
if (textBlock.containsTextRange(textEntity.getTextRange())) {
textEntity.setDeepestFullyContainingNode(this);
}
textEntity.addIntersectingNode(this);
streamChildren().filter(semanticNode -> semanticNode.getTextRange().intersects(textEntity.getTextRange()))
.forEach(node -> node.addThisToEntityIfIntersects(textEntity));
@@ -17,6 +17,7 @@ import com.iqser.red.service.redaction.v1.server.model.document.DocumentTree;
import com.iqser.red.service.redaction.v1.server.model.document.entity.TextEntity;
import com.iqser.red.service.redaction.v1.server.model.document.textblock.TextBlock;
import com.iqser.red.service.redaction.v1.server.model.document.textblock.TextBlockCollector;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.LayoutEngine;
import lombok.AccessLevel;
import lombok.AllArgsConstructor;
@@ -32,6 +33,8 @@ import lombok.experimental.FieldDefaults;
@EqualsAndHashCode(onlyExplicitlyIncluded = true)
public class Table implements SemanticNode {
@Builder.Default
Set<LayoutEngine> engines = new HashSet<>(Set.of(LayoutEngine.ALGORITHM));
@EqualsAndHashCode.Include
List<Integer> treeId;
DocumentTree documentTree;
@@ -11,6 +11,7 @@ import com.iqser.red.service.redaction.v1.server.model.document.entity.TextEntit
import com.iqser.red.service.redaction.v1.server.model.document.DocumentTree;
import com.iqser.red.service.redaction.v1.server.model.document.textblock.TextBlock;
import com.iqser.red.service.redaction.v1.server.model.document.textblock.TextBlockCollector;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.LayoutEngine;
import lombok.AccessLevel;
import lombok.AllArgsConstructor;
@@ -26,6 +27,9 @@ import lombok.experimental.FieldDefaults;
@EqualsAndHashCode(onlyExplicitlyIncluded = true)
public class TableCell implements GenericSemanticNode {
@Builder.Default
Set<LayoutEngine> engines = new HashSet<>(Set.of(LayoutEngine.ALGORITHM));
@EqualsAndHashCode.Include
List<Integer> treeId;
int row;
@@ -1,6 +1,7 @@
package com.iqser.red.service.redaction.v1.server.service;
import java.time.OffsetDateTime;
import java.util.Comparator;
import java.util.List;
import java.util.Optional;
import java.util.Set;
@@ -12,6 +13,7 @@ import com.iqser.red.service.persistence.service.v1.api.shared.model.analysislog
import com.iqser.red.service.persistence.service.v1.api.shared.model.analysislog.entitylog.ChangeType;
import com.iqser.red.service.persistence.service.v1.api.shared.model.analysislog.entitylog.EntityLogEntry;
import com.iqser.red.service.persistence.service.v1.api.shared.model.analysislog.entitylog.EntryState;
import com.iqser.red.service.persistence.service.v1.api.shared.model.analysislog.entitylog.ManualChange;
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.ManualRedactions;
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.IdRemoval;
@@ -72,13 +74,34 @@ public class EntityChangeLogService {
.collect(Collectors.toSet());
List<EntityLogEntry> removedEntries = previousEntityLogEntries.stream()
.filter(entry -> !existingIds.contains(entry.getId()))
.collect(Collectors.toList());
List<EntityLogEntry> removedDossierRedaction = removedEntries.stream()
.filter(e -> e.getState() == EntryState.REMOVED && e.getType().equals("dossier_redaction"))
.toList();
previousEntityLogEntries.removeAll(removedDossierRedaction);
removedEntries.removeAll(removedDossierRedaction);
removedEntries.forEach(entry -> entry.getChanges().add(new Change(analysisNumber, ChangeType.REMOVED, now)));
removedEntries.forEach(entry -> entry.setState(EntryState.REMOVED));
removedEntries.forEach(entry -> addManualChangeForDictionaryRemovals(entry, manualRedactions));
newEntityLogEntries.addAll(removedEntries);
}
private void addManualChangeForDictionaryRemovals(EntityLogEntry entry, ManualRedactions manualRedactions) {
if (manualRedactions == null || manualRedactions.getIdsToRemove().isEmpty()) {
return;
}
manualRedactions.getIdsToRemove()
.stream()
.filter(IdRemoval::isRemoveFromDictionary)//
.filter(removed -> removed.getAnnotationId().equals(entry.getId()))//
.findFirst()//
.ifPresent(idRemove -> entry.getManualChanges().add(ManualChangeFactory.toManualChange(idRemove, false)));
}
private ChangeType calculateChangeType(EntryState state, EntryState previousState) {
if (state.equals(previousState)) {
@@ -4,6 +4,7 @@ import java.util.ArrayList;
import java.util.Collections;
import java.util.HashSet;
import java.util.List;
import java.util.Locale;
import java.util.Set;
import java.util.stream.Collectors;
@@ -30,6 +31,7 @@ import com.iqser.red.service.redaction.v1.server.model.document.entity.PositionO
import com.iqser.red.service.redaction.v1.server.model.document.entity.TextEntity;
import com.iqser.red.service.redaction.v1.server.model.document.nodes.Document;
import com.iqser.red.service.redaction.v1.server.model.document.nodes.Image;
import com.iqser.red.service.redaction.v1.server.model.document.nodes.ImageType;
import com.iqser.red.service.redaction.v1.server.storage.RedactionStorageService;
import lombok.AccessLevel;
@@ -4,8 +4,8 @@ import java.time.OffsetDateTime;
import java.util.List;
import java.util.stream.Collectors;
import org.springframework.stereotype.Service;
import com.iqser.red.service.persistence.service.v1.api.shared.model.analysislog.entitylog.ManualChange;
import com.iqser.red.service.persistence.service.v1.api.shared.model.analysislog.entitylog.ManualRedactionType;
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.BaseAnnotation;
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.IdRemoval;
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.ManualForceRedaction;
@@ -13,8 +13,6 @@ import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.ManualRecategorization;
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.ManualRedactionEntry;
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.ManualResizeRedaction;
import com.iqser.red.service.persistence.service.v1.api.shared.model.analysislog.entitylog.ManualChange;
import com.iqser.red.service.persistence.service.v1.api.shared.model.analysislog.entitylog.ManualRedactionType;
import lombok.experimental.UtilityClass;
@@ -23,7 +21,9 @@ public class ManualChangeFactory {
public List<ManualChange> toManualChangeList(List<BaseAnnotation> manualChanges, boolean isHint) {
return manualChanges.stream().map(baseAnnotation -> toManualChange(baseAnnotation, isHint)).collect(Collectors.toList());
return manualChanges.stream()
.map(baseAnnotation -> toManualChange(baseAnnotation, isHint))
.collect(Collectors.toList());
}
@@ -37,7 +37,8 @@ public class ManualChangeFactory {
} else if (baseAnnotation instanceof ManualForceRedaction manualForceRedaction) {
manualChange.withManualRedactionType(ManualRedactionType.FORCE).withChange("legalBasis", manualForceRedaction.getLegalBasis());
} else if (baseAnnotation instanceof ManualResizeRedaction manualResizeRedact) {
manualChange.withManualRedactionType(manualResizeRedact.getUpdateDictionary() ? ManualRedactionType.RESIZE_IN_DICTIONARY : ManualRedactionType.RESIZE).withChange("value", manualResizeRedact.getValue());
manualChange.withManualRedactionType(manualResizeRedact.getUpdateDictionary() ? ManualRedactionType.RESIZE_IN_DICTIONARY : ManualRedactionType.RESIZE)
.withChange("value", manualResizeRedact.getValue());
} else if (baseAnnotation instanceof ManualRedactionEntry manualRedactionEntry) {
manualChange.withManualRedactionType(manualRedactionEntry.isAddToDictionary() ? ManualRedactionType.ADD_TO_DICTIONARY : ManualRedactionType.ADD)
.withChange("value", manualRedactionEntry.getValue());
@@ -6,6 +6,7 @@ import java.util.LinkedList;
import java.util.List;
import java.util.Map;
import java.util.NoSuchElementException;
import java.util.Set;
import com.iqser.red.service.redaction.v1.server.model.document.DocumentTree;
import com.iqser.red.service.redaction.v1.server.model.document.nodes.Footer;
@@ -76,6 +77,7 @@ public class DocumentGraphMapper {
node.setLeafTextBlock(textBlock);
}
List<Integer> treeId = Arrays.stream(entryData.getTreeId()).boxed().toList();
entryData.getEngines().forEach(engine -> node.addEngine(engine));
node.setTreeId(treeId);
switch (entryData.getType()) {
@@ -57,18 +57,23 @@ public class SectionFinderService {
if (entry.getContainingNodeId().isEmpty()) {
continue; // Empty list means either Entity has not been found or it is between main sections. Thus, this might lead to wrong reanalysis.
}
sectionsToReanalyse.add(entry.getContainingNodeId().get(0));
sectionsToReanalyse.add(entry.getContainingNodeId()
.get(0));
}
}
var dictionaryIncrementsSearch = new SearchImplementation(dictionaryIncrement.getValues().stream().map(DictionaryIncrementValue::getValue).collect(Collectors.toList()),
true);
var dictionaryIncrementsSearch = new SearchImplementation(dictionaryIncrement.getValues()
.stream()
.map(DictionaryIncrementValue::getValue)
.toList(), true);
document.streamChildren().forEach(mainNode -> {
if (dictionaryIncrementsSearch.atLeastOneMatches(mainNode.getTextBlock().getSearchText())) {
sectionsToReanalyse.add(mainNode.getTreeId().get(0));
}
});
document.streamChildren()
.forEach(mainNode -> {
if (dictionaryIncrementsSearch.atLeastOneMatches(mainNode.getTextBlock().getSearchText())) {
sectionsToReanalyse.add(mainNode.getTreeId()
.get(0));
}
});
Set<Integer> relevantPagesForReanalysis = getRelevantPageNumbersForAddRedactions(analyzeRequest);
relevantPagesForReanalysis.addAll(getRelevantPageNumbersForImportedRedactions(importedRedactions, relevantManuallyModifiedAnnotationIds));
@@ -87,8 +92,11 @@ public class SectionFinderService {
return document.getPages()
.stream()
.filter(page -> relevantPagesForReanalysis.contains(page.getNumber()))
.flatMap(page -> Stream.concat(page.getMainBody().stream().filter(node -> node.getType().equals(NodeType.SECTION)), Stream.of(page.getHeader(), page.getFooter())))
.map(node -> node.getTreeId().get(0))
.flatMap(page -> Stream.concat(page.getMainBody()
.stream()
.filter(node -> node.getType().equals(NodeType.SECTION)), Stream.of(page.getHeader(), page.getFooter())))
.map(node -> node.getTreeId()
.get(0))
.toList();
}
@@ -99,8 +107,7 @@ public class SectionFinderService {
return Collections.emptySet();
}
return analyzeRequest.getManualRedactions()
.getEntriesToAdd()
return analyzeRequest.getManualRedactions().getEntriesToAdd()
.stream()
.filter(addRedaction -> !(addRedaction.isAddToDictionary() || addRedaction.isAddToDossierDictionary()))
.map(ManualRedactionEntry::getPositions)
@@ -132,11 +139,22 @@ public class SectionFinderService {
return new HashSet<>();
}
return Stream.concat(manualRedactions.getResizeRedactions().stream().map(ManualResizeRedaction::getAnnotationId),
Stream.concat(manualRedactions.getLegalBasisChanges().stream().map(ManualLegalBasisChange::getAnnotationId),
Stream.concat(manualRedactions.getRecategorizations().stream().map(ManualRecategorization::getAnnotationId),
Stream.concat(manualRedactions.getIdsToRemove().stream().map(IdRemoval::getAnnotationId),
manualRedactions.getForceRedactions().stream().map(ManualForceRedaction::getAnnotationId))))).collect(Collectors.toSet());
return Stream.concat(manualRedactions.getResizeRedactions()
.stream()
.map(ManualResizeRedaction::getAnnotationId),
Stream.concat(manualRedactions.getLegalBasisChanges()
.stream()
.map(ManualLegalBasisChange::getAnnotationId),
Stream.concat(manualRedactions.getRecategorizations()
.stream()
.map(ManualRecategorization::getAnnotationId),
Stream.concat(manualRedactions.getIdsToRemove()
.stream()
.map(IdRemoval::getAnnotationId),
manualRedactions.getForceRedactions()
.stream()
.map(ManualForceRedaction::getAnnotationId)))))
.collect(Collectors.toSet());
}
}
@@ -1,6 +1,9 @@
package com.iqser.red.service.redaction.v1.server.service.drools;
import java.util.ArrayList;
import java.util.Comparator;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.regex.Pattern;
import java.util.stream.Collectors;
@@ -12,24 +15,34 @@ import org.springframework.stereotype.Service;
import com.google.common.collect.Sets;
import com.iqser.red.service.persistence.service.v1.api.shared.model.RuleFileType;
import com.iqser.red.service.redaction.v1.model.DroolsSyntaxDeprecatedWarnings;
import com.iqser.red.service.redaction.v1.model.DroolsSyntaxErrorMessage;
import com.iqser.red.service.redaction.v1.model.DroolsSyntaxValidation;
import com.iqser.red.service.redaction.v1.model.RuleValidationModel;
import com.iqser.red.service.redaction.v1.server.DeprecatedElementsFinder;
import com.iqser.red.service.redaction.v1.server.model.dictionary.SearchImplementation;
import com.iqser.red.service.redaction.v1.server.model.drools.BasicQuery;
import com.iqser.red.service.redaction.v1.server.model.drools.BasicRule;
import com.iqser.red.service.redaction.v1.server.model.drools.RuleClass;
import com.iqser.red.service.redaction.v1.server.model.drools.RuleFileBluePrint;
import com.iqser.red.service.redaction.v1.server.model.drools.RuleUnit;
import com.iqser.red.service.redaction.v1.server.storage.RuleManagementResources;
import lombok.RequiredArgsConstructor;
import lombok.SneakyThrows;
import lombok.extern.slf4j.Slf4j;
@Service
@RequiredArgsConstructor
@Slf4j
public class DroolsSyntaxValidationService {
private static final Pattern allowedImportsPattern = Pattern.compile("^(?:import\\s+static\\s+)?(?:import\\s+)?(?:com\\.knecon\\.fforesight|com\\.iqser\\.red)\\..*;$");
private final KieContainerCreationService kieContainerCreationService;
private final DeprecatedElementsFinder deprecatedElementsFinder;
@SneakyThrows
public DroolsSyntaxValidation testRules(RuleValidationModel rules) {
@@ -43,15 +56,74 @@ public class DroolsSyntaxValidationService {
}
DroolsSyntaxValidation droolsCompilerSyntaxValidation = buildDroolsCompilerSyntaxValidation(rules);
droolsCompilerSyntaxValidation.getDroolsSyntaxErrorMessages().addAll(customDroolsSyntaxValidation.getDroolsSyntaxErrorMessages());
droolsCompilerSyntaxValidation.getDroolsSyntaxDeprecatedWarnings().addAll(customDroolsSyntaxValidation.getDroolsSyntaxDeprecatedWarnings());
return droolsCompilerSyntaxValidation;
}
private DroolsSyntaxDeprecatedWarnings getWarningsForDeprecatedImports(RuleFileBluePrint ruleFileBluePrint) {
if (!deprecatedElementsFinder.getDeprecatedClasses().isEmpty()) {
String imports = ruleFileBluePrint.getImports();
SearchImplementation classesSearchImplementation = deprecatedElementsFinder.getClassesSearchImplementation();
List<SearchImplementation.MatchPosition> matches = classesSearchImplementation.getMatches(imports);
if (!matches.isEmpty()) {
String sb = "Following imports are deprecated: \n" + matches.stream()
.map(m -> imports.substring(m.startIndex(), m.endIndex()))
.collect(Collectors.joining("\n"));
return DroolsSyntaxDeprecatedWarnings.builder().line(ruleFileBluePrint.getImportLine()).column(0).message(sb)
.build();
}
}
return null;
}
private List<DroolsSyntaxDeprecatedWarnings> getWarningsForDeprecatedRules(RuleFileBluePrint ruleFileBluePrint) {
List<DroolsSyntaxDeprecatedWarnings> warningMessages = new ArrayList<>();
// checks the rules for deprecateMethods
if (!deprecatedElementsFinder.getDeprecatedMethods().isEmpty()) {
SearchImplementation methodsSearchImplementation = deprecatedElementsFinder.getMethodsSearchImplementation();
Map<String, String> deprecatedMethodsSignatureMap = deprecatedElementsFinder.getDeprecatedMethodsSignaturesMap();
for (RuleClass ruleClass : ruleFileBluePrint.getRuleClasses()) {
for (RuleUnit ruleUnit : ruleClass.ruleUnits()) {
for (BasicRule basicRule : ruleUnit.rules()) {
List<SearchImplementation.MatchPosition> matches = methodsSearchImplementation.getMatches(basicRule.getCode());
if (!matches.isEmpty()) {
String warningMessage = matches.stream()
.map(m -> basicRule.getCode().substring(m.startIndex(), m.endIndex()))
.distinct()
.map(dm -> String.format("Method %s might be deprecated because of \n %s \n", dm, deprecatedMethodsSignatureMap.get(dm)))
.collect(Collectors.joining("\n"));
warningMessages.add(DroolsSyntaxDeprecatedWarnings.builder().line(basicRule.getLine()).column(0).message(warningMessage)
.build());
}
}
}
}
}
return warningMessages.stream()
.sorted(Comparator.comparingInt(DroolsSyntaxDeprecatedWarnings::getLine))
.collect(Collectors.toList());
}
private DroolsSyntaxValidation buildCustomDroolsSyntaxValidation(String ruleString, RuleFileType ruleFileType) throws DroolsParserException {
RuleFileBluePrint ruleFileBluePrint = RuleFileParser.buildBluePrintFromRulesString(ruleString);
DroolsSyntaxValidation customSyntaxValidation = ruleFileBluePrint.getDroolsSyntaxValidation();
// find deprecated elements in the ruleFileBluePrint
DroolsSyntaxDeprecatedWarnings warningMessageForImports = getWarningsForDeprecatedImports(ruleFileBluePrint);
if (warningMessageForImports != null) {
customSyntaxValidation.getDroolsSyntaxDeprecatedWarnings().add(warningMessageForImports);
}
customSyntaxValidation.getDroolsSyntaxDeprecatedWarnings().addAll(getWarningsForDeprecatedRules(ruleFileBluePrint));
RuleFileBluePrint baseRuleFileBluePrint = switch (ruleFileType) {
case ENTITY -> RuleFileParser.buildBluePrintFromRulesString(RuleManagementResources.getBaseRuleFileString());
case COMPONENT -> RuleFileParser.buildBluePrintFromRulesString(RuleManagementResources.getBaseComponentRuleFileString());
@@ -60,35 +132,36 @@ public class DroolsSyntaxValidationService {
if (!importsAreValid(baseRuleFileBluePrint, ruleFileBluePrint)) {
customSyntaxValidation.getDroolsSyntaxErrorMessages()
.add(DroolsSyntaxErrorMessage.builder()
.line(ruleFileBluePrint.getImportLine())
.column(0)
.message(String.format("Changing the imports is not allowed! Must be: %n%s", baseRuleFileBluePrint.getImports()))
.build());
.line(ruleFileBluePrint.getImportLine())
.column(0)
.message(String.format("Changing the imports is not allowed! Must be: %n%s", baseRuleFileBluePrint.getImports()))
.build());
}
if (!ruleFileBluePrint.getGlobals().equals(baseRuleFileBluePrint.getGlobals())) {
customSyntaxValidation.getDroolsSyntaxErrorMessages()
.add(DroolsSyntaxErrorMessage.builder()
.line(ruleFileBluePrint.getGlobalsLine())
.column(0)
.message(String.format("Changing the globals is not allowed! Must be: %n%s", baseRuleFileBluePrint.getGlobals()))
.build());
.line(ruleFileBluePrint.getGlobalsLine())
.column(0)
.message(String.format("Changing the globals is not allowed! Must be: %n%s", baseRuleFileBluePrint.getGlobals()))
.build());
}
baseRuleFileBluePrint.getQueries().forEach(basicQuery -> {
if (!validateQueryIsPresent(basicQuery, ruleFileBluePrint)) {
customSyntaxValidation.getDroolsSyntaxErrorMessages()
.add(DroolsSyntaxErrorMessage.builder()
.line(basicQuery.getLine())
.column(0)
.message(String.format("Changing or removing the query %s is not allowed! Must be: %n%s", basicQuery.getName(), basicQuery.getCode()))
.build());
}
});
baseRuleFileBluePrint.getQueries()
.forEach(basicQuery -> {
if (!validateQueryIsPresent(basicQuery, ruleFileBluePrint)) {
customSyntaxValidation.getDroolsSyntaxErrorMessages()
.add(DroolsSyntaxErrorMessage.builder()
.line(basicQuery.getLine())
.column(0)
.message(String.format("Changing or removing the query %s is not allowed! Must be: %n%s", basicQuery.getName(), basicQuery.getCode()))
.build());
}
});
if (ruleFileType.equals(RuleFileType.ENTITY)) {
String requiredAgendaGroup = "LOCAL_DICTIONARY_ADDS";
if (!validateAgendaGroupIsPresent(ruleFileBluePrint, requiredAgendaGroup)) {
customSyntaxValidation.getDroolsSyntaxErrorMessages().add(DroolsSyntaxErrorMessage.builder().line(0)
.column(0).message(String.format("At least one rule with Agenda-Group '%s' required!", requiredAgendaGroup))
.build());
customSyntaxValidation.getDroolsSyntaxErrorMessages()
.add(DroolsSyntaxErrorMessage.builder().line(0).column(0).message(String.format("At least one rule with Agenda-Group '%s' required!", requiredAgendaGroup))
.build());
}
}
return customSyntaxValidation;
@@ -97,7 +170,8 @@ public class DroolsSyntaxValidationService {
private boolean validateAgendaGroupIsPresent(RuleFileBluePrint ruleFileBluePrint, String agendaGroupName) {
return ruleFileBluePrint.streamAllRules().anyMatch(basicRule -> basicRule.getAgendaGroup().equals(agendaGroupName));
return ruleFileBluePrint.streamAllRules()
.anyMatch(basicRule -> basicRule.getAgendaGroup().equals(agendaGroupName));
}
@@ -109,13 +183,16 @@ public class DroolsSyntaxValidationService {
Set<String> additionalImports = Sets.difference(imports, baseImports);
return additionalImports.stream().allMatch(additionalImport -> allowedImportsPattern.matcher(additionalImport).matches());
return additionalImports.stream()
.allMatch(additionalImport -> allowedImportsPattern.matcher(additionalImport).matches());
}
private static boolean validateQueryIsPresent(BasicQuery queryToCheckFor, RuleFileBluePrint ruleFileBluePrint) {
return ruleFileBluePrint.getQueries().stream().anyMatch(query -> query.getName().equals(queryToCheckFor.getName()) && query.getCode().equals(queryToCheckFor.getCode()));
return ruleFileBluePrint.getQueries()
.stream()
.anyMatch(query -> query.getName().equals(queryToCheckFor.getName()) && query.getCode().equals(queryToCheckFor.getCode()));
}
@@ -124,9 +201,9 @@ public class DroolsSyntaxValidationService {
var versionId = System.currentTimeMillis();
var testRules = "test-rules";
KieBuilder kieBuilder = kieContainerCreationService.registerNewKieContainerVersion(testRules,
versionId,
rules.getRulesString(),
RuleFileType.valueOf(rules.getRuleFileType()));
versionId,
rules.getRulesString(),
RuleFileType.valueOf(rules.getRuleFileType()));
return buildDroolsCompilerSyntaxValidation(kieBuilder);
}
@@ -134,14 +211,18 @@ public class DroolsSyntaxValidationService {
private DroolsSyntaxValidation buildDroolsCompilerSyntaxValidation(KieBuilder kieBuilder) {
List<Message> errorMessages = kieBuilder.getResults().getMessages(Message.Level.ERROR);
List<DroolsSyntaxErrorMessage> droolsSyntaxErrorMessages = errorMessages.stream().map(this::buildDroolsSyntaxErrorMessage).collect(Collectors.toList());
return DroolsSyntaxValidation.builder().droolsSyntaxErrorMessages(droolsSyntaxErrorMessages).build();
List<DroolsSyntaxErrorMessage> droolsSyntaxErrorMessages = errorMessages.stream()
.map(this::buildDroolsSyntaxErrorMessage)
.collect(Collectors.toList());
return DroolsSyntaxValidation.builder().droolsSyntaxErrorMessages(droolsSyntaxErrorMessages)
.build();
}
private DroolsSyntaxErrorMessage buildDroolsSyntaxErrorMessage(Message message) {
return DroolsSyntaxErrorMessage.builder().line(message.getLine()).column(message.getColumn()).message(message.getText()).build();
return DroolsSyntaxErrorMessage.builder().line(message.getLine()).column(message.getColumn()).message(message.getText())
.build();
}
}
@@ -1292,6 +1292,7 @@ public class RedactionIntegrationTest extends AbstractRedactionIntegrationTest {
.recategorizations(Set.of(ManualRecategorization.builder()
.annotationId("3029651d0842a625f2d23f8375c23600")
.type("CBI_author")
.legalBasis("")
.requestDate(OffsetDateTime.now())
.fileId(TEST_FILE_ID)
.build()))
@@ -5,12 +5,14 @@ import static org.junit.jupiter.api.Assertions.assertEquals;
import java.awt.Color;
import java.io.File;
import java.io.FileOutputStream;
import java.nio.file.Path;
import java.util.List;
import java.util.Set;
import java.util.function.Function;
import java.util.stream.Collectors;
import org.drools.io.ClassPathResource;
import org.junit.jupiter.api.BeforeEach;
import org.junit.jupiter.api.Test;
import org.springframework.beans.factory.annotation.Autowired;
@@ -1,5 +1,6 @@
package com.iqser.red.service.redaction.v1.server.drools.files.management.services;
import static org.junit.jupiter.api.Assertions.assertEquals;
import static org.junit.jupiter.api.Assertions.assertFalse;
import static org.junit.jupiter.api.Assertions.assertTrue;
@@ -18,6 +19,7 @@ import org.springframework.core.io.ClassPathResource;
import com.iqser.red.service.persistence.service.v1.api.shared.model.RuleFileType;
import com.iqser.red.service.redaction.v1.model.DroolsSyntaxValidation;
import com.iqser.red.service.redaction.v1.model.RuleValidationModel;
import com.iqser.red.service.redaction.v1.server.DeprecatedElementsFinder;
import com.iqser.red.service.redaction.v1.server.client.RulesClient;
import com.iqser.red.service.redaction.v1.server.model.drools.RuleFileBluePrint;
import com.iqser.red.service.redaction.v1.server.service.document.EntityEnrichmentService;
@@ -47,13 +49,15 @@ class DroolsSyntaxValidationServiceTest {
@SneakyThrows
void testRules() {
DroolsSyntaxValidationService droolsSyntaxValidationService = new DroolsSyntaxValidationService(new KieContainerCreationService(rulesClient));
DroolsSyntaxValidationService droolsSyntaxValidationService = new DroolsSyntaxValidationService(new KieContainerCreationService(rulesClient),
new DeprecatedElementsFinder());
var rulesFile = new ClassPathResource("drools/rules.drl");
String rulesString = new String(rulesFile.getInputStream().readAllBytes());
DroolsSyntaxValidation droolsSyntaxValidation = droolsSyntaxValidationService.testRules(new RuleValidationModel(RuleFileType.ENTITY.name(), rulesString));
droolsSyntaxValidation.getDroolsSyntaxErrorMessages().forEach(System.out::println);
droolsSyntaxValidation.getDroolsSyntaxErrorMessages()
.forEach(System.out::println);
assertTrue(droolsSyntaxValidation.isCompiled());
}
@@ -62,14 +66,16 @@ class DroolsSyntaxValidationServiceTest {
@SneakyThrows
void testRulesWithRemovedImportsAndChangedName() {
DroolsSyntaxValidationService droolsSyntaxValidationService = new DroolsSyntaxValidationService(new KieContainerCreationService(rulesClient));
DroolsSyntaxValidationService droolsSyntaxValidationService = new DroolsSyntaxValidationService(new KieContainerCreationService(rulesClient),
new DeprecatedElementsFinder());
var rulesFile = new ClassPathResource("drools/rules.drl");
String rulesString = new String(rulesFile.getInputStream().readAllBytes());
rulesString = rulesString.replaceAll("import com.iqser.red.service.redaction.v1.server.model.document.nodes.TableCell;", "");
rulesString = rulesString.replaceAll("rule \"LDS.0.0: Run local dictionary search\"", "rule \"LDS.0.0: run local dictionary search\"");
DroolsSyntaxValidation droolsSyntaxValidation = droolsSyntaxValidationService.testRules(new RuleValidationModel(RuleFileType.ENTITY.name(), rulesString));
droolsSyntaxValidation.getDroolsSyntaxErrorMessages().forEach(System.out::println);
droolsSyntaxValidation.getDroolsSyntaxErrorMessages()
.forEach(System.out::println);
assertTrue(droolsSyntaxValidation.isCompiled());
}
@@ -77,102 +83,32 @@ class DroolsSyntaxValidationServiceTest {
@SneakyThrows
void testRulesWithAddedImports() {
DroolsSyntaxValidationService droolsSyntaxValidationService = new DroolsSyntaxValidationService(new KieContainerCreationService(rulesClient));
DroolsSyntaxValidationService droolsSyntaxValidationService = new DroolsSyntaxValidationService(new KieContainerCreationService(rulesClient),
new DeprecatedElementsFinder());
var rulesFile = new ClassPathResource("drools/rules.drl");
String rulesString = new String(rulesFile.getInputStream().readAllBytes());
rulesString = rulesString.replaceAll("import com.iqser.red.service.redaction.v1.server.model.document.nodes.TableCell;", "import com.iqser.red.service.redaction.v1.server.model.document.nodes.TableCell;\nimport com.iqser.red.service.redaction.v1.server.service.document.EntityComparators;");
rulesString = rulesString.replaceAll("import com.iqser.red.service.redaction.v1.server.model.document.nodes.TableCell;",
"import com.iqser.red.service.redaction.v1.server.model.document.nodes.TableCell;\nimport com.iqser.red.service.redaction.v1.server.service.document.EntityComparators;");
DroolsSyntaxValidation droolsSyntaxValidation = droolsSyntaxValidationService.testRules(new RuleValidationModel(RuleFileType.ENTITY.name(), rulesString));
droolsSyntaxValidation.getDroolsSyntaxErrorMessages().forEach(System.out::println);
droolsSyntaxValidation.getDroolsSyntaxErrorMessages()
.forEach(System.out::println);
assertTrue(droolsSyntaxValidation.isCompiled());
}
@Test
@SneakyThrows
void testRulesWithUnallowedAddedImports() {
DroolsSyntaxValidationService droolsSyntaxValidationService = new DroolsSyntaxValidationService(new KieContainerCreationService(rulesClient));
var rulesFile = new ClassPathResource("drools/rules.drl");
String rulesString = new String(rulesFile.getInputStream().readAllBytes());
rulesString = rulesString.replaceAll("import com.iqser.red.service.redaction.v1.server.model.document.nodes.TableCell;", "import com.iqser.red.service.redaction.v1.server.model.document.nodes.TableCell;\nimport com.google.common.collect.Sets;");
DroolsSyntaxValidation droolsSyntaxValidation = droolsSyntaxValidationService.testRules(new RuleValidationModel(RuleFileType.ENTITY.name(), rulesString));
droolsSyntaxValidation.getDroolsSyntaxErrorMessages().forEach(System.out::println);
assertFalse(droolsSyntaxValidation.isCompiled());
}
@Test
@SneakyThrows
void testAllRules() {
DroolsSyntaxValidationService droolsSyntaxValidationService = new DroolsSyntaxValidationService(new KieContainerCreationService(rulesClient));
var rulesFile = new ClassPathResource("drools/all_redact_manager_rules.drl");
String rulesString = new String(rulesFile.getInputStream().readAllBytes());
DroolsSyntaxValidation droolsSyntaxValidation = droolsSyntaxValidationService.testRules(new RuleValidationModel(RuleFileType.ENTITY.name(), rulesString));
droolsSyntaxValidation.getDroolsSyntaxErrorMessages().forEach(System.out::println);
assertTrue(droolsSyntaxValidation.isCompiled());
}
@Test
@SneakyThrows
void testAcceptanceRules() {
DroolsSyntaxValidationService droolsSyntaxValidationService = new DroolsSyntaxValidationService(new KieContainerCreationService(rulesClient));
var rulesFile = new ClassPathResource("drools/acceptance_rules.drl");
String rulesString = new String(rulesFile.getInputStream().readAllBytes());
DroolsSyntaxValidation droolsSyntaxValidation = droolsSyntaxValidationService.testRules(new RuleValidationModel(RuleFileType.ENTITY.name(), rulesString));
droolsSyntaxValidation.getDroolsSyntaxErrorMessages().forEach(System.out::println);
assertTrue(droolsSyntaxValidation.isCompiled());
}
@Test
@SneakyThrows
void testManualRedactionRules() {
DroolsSyntaxValidationService droolsSyntaxValidationService = new DroolsSyntaxValidationService(new KieContainerCreationService(rulesClient));
var rulesFile = new ClassPathResource("drools/manual_redaction_rules.drl");
String rulesString = new String(rulesFile.getInputStream().readAllBytes());
DroolsSyntaxValidation droolsSyntaxValidation = droolsSyntaxValidationService.testRules(new RuleValidationModel(RuleFileType.ENTITY.name(), rulesString));
droolsSyntaxValidation.getDroolsSyntaxErrorMessages().forEach(System.out::println);
assertTrue(droolsSyntaxValidation.isCompiled());
}
@Test
@SneakyThrows
void testRulesV2() {
DroolsSyntaxValidationService droolsSyntaxValidationService = new DroolsSyntaxValidationService(new KieContainerCreationService(rulesClient));
var rulesFile = new ClassPathResource("drools/rules_v2.drl");
String rulesString = new String(rulesFile.getInputStream().readAllBytes());
DroolsSyntaxValidation droolsSyntaxValidation = droolsSyntaxValidationService.testRules(new RuleValidationModel(RuleFileType.ENTITY.name(), rulesString));
droolsSyntaxValidation.getDroolsSyntaxErrorMessages().forEach(System.out::println);
assertTrue(droolsSyntaxValidation.isCompiled());
}
@Test
@SneakyThrows
void testDocumineRules() {
DroolsSyntaxValidationService droolsSyntaxValidationService = new DroolsSyntaxValidationService(new KieContainerCreationService(rulesClient));
DroolsSyntaxValidationService droolsSyntaxValidationService = new DroolsSyntaxValidationService(new KieContainerCreationService(rulesClient),
new DeprecatedElementsFinder());
var rulesFile = new ClassPathResource("drools/documine_flora.drl");
String rulesString = new String(rulesFile.getInputStream().readAllBytes());
DroolsSyntaxValidation droolsSyntaxValidation = droolsSyntaxValidationService.testRules(new RuleValidationModel(RuleFileType.ENTITY.name(), rulesString));
droolsSyntaxValidation.getDroolsSyntaxErrorMessages().forEach(System.out::println);
droolsSyntaxValidation.getDroolsSyntaxErrorMessages()
.forEach(System.out::println);
assertTrue(droolsSyntaxValidation.isCompiled());
}
@@ -181,7 +117,8 @@ class DroolsSyntaxValidationServiceTest {
@SneakyThrows
void testCorruptedRules() {
DroolsSyntaxValidationService droolsSyntaxValidationService = new DroolsSyntaxValidationService(new KieContainerCreationService(rulesClient));
DroolsSyntaxValidationService droolsSyntaxValidationService = new DroolsSyntaxValidationService(new KieContainerCreationService(rulesClient),
new DeprecatedElementsFinder());
var rulesFile = new ClassPathResource("drools/rules.drl");
String rulesString = new String(rulesFile.getInputStream().readAllBytes());
@@ -196,12 +133,13 @@ class DroolsSyntaxValidationServiceTest {
@SneakyThrows
void testCorruptedImports() {
DroolsSyntaxValidationService droolsSyntaxValidationService = new DroolsSyntaxValidationService(new KieContainerCreationService(rulesClient));
DroolsSyntaxValidationService droolsSyntaxValidationService = new DroolsSyntaxValidationService(new KieContainerCreationService(rulesClient),
new DeprecatedElementsFinder());
var rulesFile = new ClassPathResource("drools/rules.drl");
String rulesString = new String(rulesFile.getInputStream().readAllBytes());
String corruptedRules = rulesString.replaceAll("import com.iqser.red.service.redaction.v1.server.model.document.nodes.ImageType;",
"import com.iqser.red.service.redaction.v1.server.model.document.nodes.ImageType;\nimport com.iqser.red.service.redaction.v1.server.model.document.nodes.SomethingElse;");
"import com.iqser.red.service.redaction.v1.server.model.document.nodes.ImageType;\nimport com.iqser.red.service.redaction.v1.server.model.document.nodes.SomethingElse;");
DroolsSyntaxValidation droolsSyntaxValidation = droolsSyntaxValidationService.testRules(new RuleValidationModel(RuleFileType.ENTITY.name(), corruptedRules));
assertFalse(droolsSyntaxValidation.isCompiled());
@@ -212,14 +150,16 @@ class DroolsSyntaxValidationServiceTest {
@SneakyThrows
void testRemoveQuery() {
DroolsSyntaxValidationService droolsSyntaxValidationService = new DroolsSyntaxValidationService(new KieContainerCreationService(rulesClient));
DroolsSyntaxValidationService droolsSyntaxValidationService = new DroolsSyntaxValidationService(new KieContainerCreationService(rulesClient),
new DeprecatedElementsFinder());
var rulesFile = new ClassPathResource("drools/rules.drl");
String rulesString = new String(rulesFile.getInputStream().readAllBytes());
String corruptedRules = rulesString.replaceAll("query \"getFileAttributes\"\n.*\n *end", "");
DroolsSyntaxValidation droolsSyntaxValidation = droolsSyntaxValidationService.testRules(new RuleValidationModel(RuleFileType.ENTITY.name(), corruptedRules));
droolsSyntaxValidation.getDroolsSyntaxErrorMessages().forEach(System.out::println);
droolsSyntaxValidation.getDroolsSyntaxErrorMessages()
.forEach(System.out::println);
assertFalse(droolsSyntaxValidation.isCompiled());
}
@@ -228,13 +168,15 @@ class DroolsSyntaxValidationServiceTest {
@SneakyThrows
void testComponentDrools() {
DroolsSyntaxValidationService droolsSyntaxValidationService = new DroolsSyntaxValidationService(new KieContainerCreationService(rulesClient));
DroolsSyntaxValidationService droolsSyntaxValidationService = new DroolsSyntaxValidationService(new KieContainerCreationService(rulesClient),
new DeprecatedElementsFinder());
var rulesFile = new ClassPathResource("drools/documine_flora_components.drl");
String rulesString = new String(rulesFile.getInputStream().readAllBytes());
DroolsSyntaxValidation droolsSyntaxValidation = droolsSyntaxValidationService.testRules(new RuleValidationModel(RuleFileType.COMPONENT.name(), rulesString));
droolsSyntaxValidation.getDroolsSyntaxErrorMessages().forEach(System.out::println);
droolsSyntaxValidation.getDroolsSyntaxErrorMessages()
.forEach(System.out::println);
assertTrue(droolsSyntaxValidation.isCompiled());
}
@@ -243,13 +185,15 @@ class DroolsSyntaxValidationServiceTest {
@SneakyThrows
void testComponentDroolsAsEntityDrools() {
DroolsSyntaxValidationService droolsSyntaxValidationService = new DroolsSyntaxValidationService(new KieContainerCreationService(rulesClient));
DroolsSyntaxValidationService droolsSyntaxValidationService = new DroolsSyntaxValidationService(new KieContainerCreationService(rulesClient),
new DeprecatedElementsFinder());
var rulesFile = new ClassPathResource("drools/documine_flora_components.drl");
String rulesString = new String(rulesFile.getInputStream().readAllBytes());
DroolsSyntaxValidation droolsSyntaxValidation = droolsSyntaxValidationService.testRules(new RuleValidationModel(RuleFileType.ENTITY.name(), rulesString));
droolsSyntaxValidation.getDroolsSyntaxErrorMessages().forEach(System.out::println);
droolsSyntaxValidation.getDroolsSyntaxErrorMessages()
.forEach(System.out::println);
assertFalse(droolsSyntaxValidation.isCompiled());
}
@@ -259,13 +203,15 @@ class DroolsSyntaxValidationServiceTest {
@Disabled
void attemptImportsFixToAllRuleFiles() {
DroolsSyntaxValidationService droolsSyntaxValidationService = new DroolsSyntaxValidationService(new KieContainerCreationService(rulesClient));
DroolsSyntaxValidationService droolsSyntaxValidationService = new DroolsSyntaxValidationService(new KieContainerCreationService(rulesClient),
new DeprecatedElementsFinder());
List<String> ruleFiles = List.of("drools/rules.drl", "drools/all_redact_manager_rules.drl",
"drools/documine_flora.drl",
"drools/manual_redaction_rules.drl",
"drools/acceptance_rules.drl",
"drools/rules_v2.drl");
List<String> ruleFiles = List.of("drools/rules.drl",
"drools/all_redact_manager_rules.drl",
"drools/documine_flora.drl",
"drools/manual_redaction_rules.drl",
"drools/acceptance_rules.drl",
"drools/rules_v2.drl");
for (String ruleFile : ruleFiles) {
var rulesFile = new ClassPathResource(ruleFile);
@@ -288,4 +234,109 @@ class DroolsSyntaxValidationServiceTest {
}
@Test
@SneakyThrows
void testRulesWithUnallowedAddedImports() {
DroolsSyntaxValidationService droolsSyntaxValidationService = new DroolsSyntaxValidationService(new KieContainerCreationService(rulesClient),
new DeprecatedElementsFinder());
var rulesFile = new ClassPathResource("drools/rules.drl");
String rulesString = new String(rulesFile.getInputStream().readAllBytes());
rulesString = rulesString.replaceAll("import com.iqser.red.service.redaction.v1.server.model.document.nodes.TableCell;",
"import com.iqser.red.service.redaction.v1.server.model.document.nodes.TableCell;\nimport com.google.common.collect.Sets;");
DroolsSyntaxValidation droolsSyntaxValidation = droolsSyntaxValidationService.testRules(new RuleValidationModel(RuleFileType.ENTITY.name(), rulesString));
droolsSyntaxValidation.getDroolsSyntaxErrorMessages()
.forEach(System.out::println);
assertFalse(droolsSyntaxValidation.isCompiled());
}
@Test
@SneakyThrows
void testAllRules() {
DroolsSyntaxValidationService droolsSyntaxValidationService = new DroolsSyntaxValidationService(new KieContainerCreationService(rulesClient),
new DeprecatedElementsFinder());
var rulesFile = new ClassPathResource("drools/all_redact_manager_rules.drl");
String rulesString = new String(rulesFile.getInputStream().readAllBytes());
DroolsSyntaxValidation droolsSyntaxValidation = droolsSyntaxValidationService.testRules(new RuleValidationModel(RuleFileType.ENTITY.name(), rulesString));
droolsSyntaxValidation.getDroolsSyntaxErrorMessages()
.forEach(System.out::println);
assertTrue(droolsSyntaxValidation.isCompiled());
}
@Test
@SneakyThrows
void testAcceptanceRules() {
DroolsSyntaxValidationService droolsSyntaxValidationService = new DroolsSyntaxValidationService(new KieContainerCreationService(rulesClient),
new DeprecatedElementsFinder());
var rulesFile = new ClassPathResource("drools/acceptance_rules.drl");
String rulesString = new String(rulesFile.getInputStream().readAllBytes());
DroolsSyntaxValidation droolsSyntaxValidation = droolsSyntaxValidationService.testRules(new RuleValidationModel(RuleFileType.ENTITY.name(), rulesString));
droolsSyntaxValidation.getDroolsSyntaxErrorMessages()
.forEach(System.out::println);
assertTrue(droolsSyntaxValidation.isCompiled());
}
@Test
@SneakyThrows
void testManualRedactionRules() {
DroolsSyntaxValidationService droolsSyntaxValidationService = new DroolsSyntaxValidationService(new KieContainerCreationService(rulesClient),
new DeprecatedElementsFinder());
var rulesFile = new ClassPathResource("drools/manual_redaction_rules.drl");
String rulesString = new String(rulesFile.getInputStream().readAllBytes());
DroolsSyntaxValidation droolsSyntaxValidation = droolsSyntaxValidationService.testRules(new RuleValidationModel(RuleFileType.ENTITY.name(), rulesString));
droolsSyntaxValidation.getDroolsSyntaxErrorMessages()
.forEach(System.out::println);
assertTrue(droolsSyntaxValidation.isCompiled());
}
@Test
@SneakyThrows
void testRulesV2() {
DroolsSyntaxValidationService droolsSyntaxValidationService = new DroolsSyntaxValidationService(new KieContainerCreationService(rulesClient),
new DeprecatedElementsFinder());
var rulesFile = new ClassPathResource("drools/rules_v2.drl");
String rulesString = new String(rulesFile.getInputStream().readAllBytes());
DroolsSyntaxValidation droolsSyntaxValidation = droolsSyntaxValidationService.testRules(new RuleValidationModel(RuleFileType.ENTITY.name(), rulesString));
droolsSyntaxValidation.getDroolsSyntaxErrorMessages()
.forEach(System.out::println);
assertTrue(droolsSyntaxValidation.isCompiled());
}
@Test
@SneakyThrows
void testRulesWithDeprecatedFunctions() {
DroolsSyntaxValidationService droolsSyntaxValidationService = new DroolsSyntaxValidationService(new KieContainerCreationService(rulesClient),
new DeprecatedElementsFinder());
var rulesFile = new ClassPathResource("drools/rules.drl");
String rulesString = new String(rulesFile.getInputStream().readAllBytes());
rulesString = rulesString.replaceAll(".resize\\(", ".resizeEntityAndReinsert(");
DroolsSyntaxValidation droolsSyntaxValidation = droolsSyntaxValidationService.testRules(new RuleValidationModel(RuleFileType.ENTITY.name(), rulesString));
droolsSyntaxValidation.getDroolsSyntaxErrorMessages()
.forEach(System.out::println);
assertTrue(droolsSyntaxValidation.isCompiled());
assertEquals(droolsSyntaxValidation.getDroolsSyntaxDeprecatedWarnings().size(), 2);
}
}
@@ -115,7 +115,12 @@ public class ManualChangesUnitTest extends BuildDocumentIntegrationTest {
assertEquals(legalBasis, entity.getManualOverwrite().getLegalBasis().orElse(entity.getMatchedRule().getLegalBasis()));
assertEquals(section, entity.getManualOverwrite().getSection().orElse(entity.getDeepestFullyContainingNode().toString()));
ManualRecategorization imageRecategorizationRequest = ManualRecategorization.builder().type("type").requestDate(start.plusSeconds(5)).annotationId(annotationId).build();
ManualRecategorization imageRecategorizationRequest = ManualRecategorization.builder()
.type("type")
.requestDate(start.plusSeconds(5))
.annotationId(annotationId)
.legalBasis("")
.build();
entity.getManualOverwrite().addChange(imageRecategorizationRequest);
assertTrue(entity.getManualOverwrite().getRecategorized().isPresent());
assertTrue(entity.getManualOverwrite().getRecategorized().get());
@@ -16,8 +16,8 @@ class SemanticNodeComparatorsTest {
@Test
public void testFirstSemanticNode() {
var node = new Section(List.of(0, 1), null, null, null, null);
var otherNode = new Section(List.of(0, 2), null, null, null, null);
var node = new Section(List.of(0, 1), null, null, null, null,null);
var otherNode = new Section(List.of(0, 2), null, null, null, null,null);
List<SemanticNode> list = new ArrayList<>();
list.add(otherNode);
list.add(node);
@@ -29,8 +29,8 @@ class SemanticNodeComparatorsTest {
@Test
public void testFirstSemanticNode2() {
var node = new Section(Collections.emptyList(), null, null, null, null);
var otherNode = new Section(List.of(0, 2), null, null, null, null);
var node = new Section(Collections.emptyList(), null, null, null, null, null);
var otherNode = new Section(List.of(0, 2), null, null, null, null, null);
List<SemanticNode> list = new ArrayList<>();
list.add(otherNode);
list.add(node);
@@ -42,8 +42,8 @@ class SemanticNodeComparatorsTest {
@Test
public void testFirstSemanticNode3() {
var node = new Section(List.of(1, 5, 8), null, null, null, null);
var otherNode = new Section(List.of(0, 2), null, null, null, null);
var node = new Section(List.of(1, 5, 8), null, null, null, null, null);
var otherNode = new Section(List.of(0, 2), null, null, null, null, null);
List<SemanticNode> list = new ArrayList<>();
list.add(otherNode);
list.add(node);
@@ -55,8 +55,8 @@ class SemanticNodeComparatorsTest {
@Test
public void testFirstSemanticNode4() {
var node = new Section(List.of(1, 5, 8), null, null, null, null);
var otherNode = new Section(List.of(1, 5, 9), null, null, null, null);
var node = new Section(List.of(1, 5, 8), null, null, null, null,null);
var otherNode = new Section(List.of(1, 5, 9), null, null, null, null,null);
List<SemanticNode> list = new ArrayList<>();
list.add(otherNode);
list.add(node);
@@ -16,6 +16,7 @@ public class LayoutParsingRequestProvider {
var originFileStorageId = RedactionStorageService.StorageIdUtils.getStorageId(request.getDossierId(), request.getFileId(), FileType.ORIGIN);
var tablesFileStorageId = RedactionStorageService.StorageIdUtils.getStorageId(request.getDossierId(), request.getFileId(), FileType.TABLES);
var imagesFileStorageId = RedactionStorageService.StorageIdUtils.getStorageId(request.getDossierId(), request.getFileId(), FileType.IMAGE_INFO);
var sectionGridStorageId = RedactionStorageService.StorageIdUtils.getStorageId(request.getDossierId(), request.getFileId(), FileType.SECTION_GRID);
var structureFileStorageId = RedactionStorageService.StorageIdUtils.getStorageId(request.getDossierId(), request.getFileId(), FileType.DOCUMENT_STRUCTURE);
var textBlockFileStorageId = RedactionStorageService.StorageIdUtils.getStorageId(request.getDossierId(), request.getFileId(), FileType.DOCUMENT_TEXT);
var positionBlockFileStorageId = RedactionStorageService.StorageIdUtils.getStorageId(request.getDossierId(), request.getFileId(), FileType.DOCUMENT_POSITION);
@@ -28,12 +29,14 @@ public class LayoutParsingRequestProvider {
.originFileStorageId(originFileStorageId)
.tablesFileStorageId(Optional.of(tablesFileStorageId))
.imagesFileStorageId(Optional.of(imagesFileStorageId))
.visualLayoutParsingFileId(Optional.empty())
.structureFileStorageId(structureFileStorageId)
.textBlockFileStorageId(textBlockFileStorageId)
.positionBlockFileStorageId(positionBlockFileStorageId)
.pageFileStorageId(pageFileStorageId)
.simplifiedTextStorageId(simplifiedTextStorageId)
.viewerDocumentStorageId(viewerDocumentStorageId)
.visualLayoutParsingFileId(Optional.empty())
.build();
}
@@ -54,6 +54,8 @@ import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.ManualRecategorization;
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.ManualLegalBasisChange;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.LayoutEngine;
global Document document
global EntityCreationService entityCreationService
global ManualChangesApplicationService manualChangesApplicationService
@@ -222,19 +224,7 @@ rule "CBI.11.0: Recommend all CBI_author entities in Table with Vertebrate Study
// Rule unit: CBI.16
rule "CBI.16.0: Add CBI_author with \"et al.\" RegEx"
agenda-group "LOCAL_DICTIONARY_ADDS"
when
$section: Section(containsString("et al."))
then
entityCreationService.byRegex("\\b([A-ZÄÖÜ][^\\s\\.,]+( [A-ZÄÖÜ]{1,2}\\.?)?( ?[A-ZÄÖÜ]\\.?)?) et al\\.?", "CBI_author", EntityType.ENTITY, 1, $section)
.forEach(entity -> {
entity.redact("CBI.16.0", "Author found by \"et al\" regex", "Reg (EC) No 1107/2009 Art. 63 (2g)");
dictionary.recommendEverywhere(entity);
});
end
rule "CBI.16.1: Add CBI_author with \"et al.\" RegEx (non vertebrate study)"
rule "CBI.16.0: Add CBI_author with \"et al.\" RegEx (non vertebrate study)"
agenda-group "LOCAL_DICTIONARY_ADDS"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
@@ -242,12 +232,12 @@ rule "CBI.16.1: Add CBI_author with \"et al.\" RegEx (non vertebrate study)"
then
entityCreationService.byRegex("\\b([A-ZÄÖÜ][^\\s\\.,]+( [A-ZÄÖÜ]{1,2}\\.?)?( ?[A-ZÄÖÜ]\\.?)?) et al\\.?", "CBI_author", EntityType.ENTITY, 1, $section)
.forEach(entity -> {
entity.redact("CBI.16.1", "Author found by \"et al\" regex", "Article 39(e)(3) of Regulation (EC) No 178/2002");
entity.redact("CBI.16.0", "Author found by \"et al\" regex", "Article 39(e)(3) of Regulation (EC) No 178/2002");
dictionary.recommendEverywhere(entity);
});
end
rule "CBI.16.2: Add CBI_author with \"et al.\" RegEx (vertebrate study)"
rule "CBI.16.1: Add CBI_author with \"et al.\" RegEx (vertebrate study)"
agenda-group "LOCAL_DICTIONARY_ADDS"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
@@ -255,7 +245,7 @@ rule "CBI.16.2: Add CBI_author with \"et al.\" RegEx (vertebrate study)"
then
entityCreationService.byRegex("\\b([A-ZÄÖÜ][^\\s\\.,]+( [A-ZÄÖÜ]{1,2}\\.?)?( ?[A-ZÄÖÜ]\\.?)?) et al\\.?", "CBI_author", EntityType.ENTITY, 1, $section)
.forEach(entity -> {
entity.redact("CBI.16.2", "Author found by \"et al\" regex", "Article 39(e)(2) of Regulation (EC) No 178/2002");
entity.redact("CBI.16.1", "Author found by \"et al\" regex", "Article 39(e)(2) of Regulation (EC) No 178/2002");
dictionary.recommendEverywhere(entity);
});
end
@@ -280,19 +270,7 @@ rule "CBI.17.1: Add recommendation for Addresses in Test Organism sections, with
// Rule unit: CBI.20
rule "CBI.20.0: Redact between \"PERFORMING LABORATORY\" and \"LABORATORY PROJECT ID:\")"
agenda-group "LOCAL_DICTIONARY_ADDS"
when
$section: Section(!hasTables(), containsString("PERFORMING LABORATORY:"), containsString("LABORATORY PROJECT ID:"))
then
entityCreationService.betweenStrings("PERFORMING LABORATORY:", "LABORATORY PROJECT ID:", "CBI_address", EntityType.ENTITY, $section)
.forEach(laboratoryEntity -> {
laboratoryEntity.redact("CBI.20.0", "PERFORMING LABORATORY was found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
dictionary.recommendEverywhere(laboratoryEntity);
});
end
rule "CBI.20.1: Redact between \"PERFORMING LABORATORY\" and \"LABORATORY PROJECT ID:\" (non vertebrate study)"
rule "CBI.20.0: Redact between \"PERFORMING LABORATORY\" and \"LABORATORY PROJECT ID:\" (non vertebrate study)"
agenda-group "LOCAL_DICTIONARY_ADDS"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
@@ -300,12 +278,12 @@ rule "CBI.20.1: Redact between \"PERFORMING LABORATORY\" and \"LABORATORY PROJEC
then
entityCreationService.betweenStrings("PERFORMING LABORATORY:", "LABORATORY PROJECT ID:", "CBI_address", EntityType.ENTITY, $section)
.forEach(laboratoryEntity -> {
laboratoryEntity.skip("CBI.20.1", "PERFORMING LABORATORY was found for non vertebrate study");
laboratoryEntity.skip("CBI.20.0", "PERFORMING LABORATORY was found for non vertebrate study");
dictionary.recommendEverywhere(laboratoryEntity);
});
end
rule "CBI.20.2: Redact between \"PERFORMING LABORATORY\" and \"LABORATORY PROJECT ID:\" (vertebrate study)"
rule "CBI.20.1: Redact between \"PERFORMING LABORATORY\" and \"LABORATORY PROJECT ID:\" (vertebrate study)"
agenda-group "LOCAL_DICTIONARY_ADDS"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
@@ -313,7 +291,7 @@ rule "CBI.20.2: Redact between \"PERFORMING LABORATORY\" and \"LABORATORY PROJEC
then
entityCreationService.betweenStrings("PERFORMING LABORATORY:", "LABORATORY PROJECT ID:", "CBI_address", EntityType.ENTITY, $section)
.forEach(laboratoryEntity -> {
laboratoryEntity.redact("CBI.20.2", "PERFORMING LABORATORY was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
laboratoryEntity.redact("CBI.20.1", "PERFORMING LABORATORY was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
dictionary.recommendEverywhere(laboratoryEntity);
});
end
@@ -322,78 +300,45 @@ rule "CBI.20.2: Redact between \"PERFORMING LABORATORY\" and \"LABORATORY PROJEC
//------------------------------------ PII rules ------------------------------------
// Rule unit: PII.0
rule "PII.0.0: Redact all PII"
when
$pii: TextEntity(type() == "PII", dictionaryEntry)
then
$pii.redact("PII.0.0", "Personal Information found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
end
rule "PII.0.1: Redact all PII (non vertebrate study)"
rule "PII.0.0: Redact all PII (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$pii: TextEntity(type() == "PII", dictionaryEntry)
then
$pii.redact("PII.0.1", "Personal Information found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
$pii.redact("PII.0.0", "Personal Information found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
end
rule "PII.0.2: Redact all PII (vertebrate study)"
rule "PII.0.1: Redact all PII (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$pii: TextEntity(type() == "PII", dictionaryEntry)
then
$pii.redact("PII.0.2", "Personal Information found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
$pii.redact("PII.0.1", "Personal Information found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
end
// Rule unit: PII.1
rule "PII.1.0: Redact Emails by RegEx"
when
$section: Section(containsString("@"))
then
entityCreationService.byRegex("\\b([A-Za-z0-9._%+\\-]+@[A-Za-z0-9.\\-]+\\.[A-Za-z\\-]{1,23}[A-Za-z])\\b", "PII", EntityType.ENTITY, 1, $section)
.forEach(emailEntity -> emailEntity.redact("PII.1.0", "Found by Email Regex", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.1.1: Redact Emails by RegEx (Non vertebrate study)"
rule "PII.1.0: Redact Emails by RegEx (Non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(containsString("@"))
then
entityCreationService.byRegex("\\b([A-Za-z0-9._%+\\-]+@[A-Za-z0-9.\\-]+\\.[A-Za-z\\-]{1,23}[A-Za-z])\\b", "PII", EntityType.ENTITY, 1, $section)
.forEach(emailEntity -> emailEntity.redact("PII.1.1", "Found by Email Regex", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
.forEach(emailEntity -> emailEntity.redact("PII.1.0", "Found by Email Regex", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
end
rule "PII.1.2: Redact Emails by RegEx (vertebrate study)"
rule "PII.1.1: Redact Emails by RegEx (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(containsString("@"))
then
entityCreationService.byRegex("\\b([A-Za-z0-9._%+\\-]+@[A-Za-z0-9.\\-]+\\.[A-Za-z\\-]{1,23}[A-Za-z])\\b", "PII", EntityType.ENTITY, 1, $section)
.forEach(emailEntity -> emailEntity.redact("PII.1.2", "Found by Email Regex", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
.forEach(emailEntity -> emailEntity.redact("PII.1.1", "Found by Email Regex", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
end
// Rule unit: PII.2
rule "PII.2.0: Redact Phone and Fax by RegEx"
when
$section: Section(containsString("Contact") ||
containsString("Telephone") ||
containsString("Phone") ||
containsString("Ph.") ||
containsString("Fax") ||
containsString("Tel") ||
containsString("Ter") ||
containsString("Mobile") ||
containsString("Fel") ||
containsString("Fer"))
then
entityCreationService.byRegexIgnoreCase("\\b(contact|telephone|phone|ph\\.|fax|tel|ter|mobile|fel|fer)[a-zA-Z\\s]{0,10}[:.\\s]{0,3}([\\+\\d\\(][\\s\\d\\(\\)\\-\\/\\.]{4,100}\\d)\\b", "PII", EntityType.ENTITY, 2, $section)
.forEach(contactEntity -> contactEntity.redact("PII.2.0", "Found by Phone and Fax Regex", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.2.1: Redact Phone and Fax by RegEx (non vertebrate study)"
rule "PII.2.0: Redact Phone and Fax by RegEx (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(containsString("Contact") ||
@@ -408,10 +353,10 @@ rule "PII.2.1: Redact Phone and Fax by RegEx (non vertebrate study)"
containsString("Fer"))
then
entityCreationService.byRegexIgnoreCase("\\b(contact|telephone|phone|ph\\.|fax|tel|ter|mobile|fel|fer)[a-zA-Z\\s]{0,10}[:.\\s]{0,3}([\\+\\d\\(][\\s\\d\\(\\)\\-\\/\\.]{4,100}\\d)\\b", "PII", EntityType.ENTITY, 2, $section)
.forEach(contactEntity -> contactEntity.redact("PII.2.1", "Found by Phone and Fax Regex", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
.forEach(contactEntity -> contactEntity.redact("PII.2.0", "Found by Phone and Fax Regex", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
end
rule "PII.2.2: Redact Phone and Fax by RegEx (vertebrate study)"
rule "PII.2.1: Redact Phone and Fax by RegEx (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(containsString("Contact") ||
@@ -426,41 +371,34 @@ rule "PII.2.2: Redact Phone and Fax by RegEx (vertebrate study)"
containsString("Fer"))
then
entityCreationService.byRegexIgnoreCase("\\b(contact|telephone|phone|ph\\.|fax|tel|ter|mobile|fel|fer)[a-zA-Z\\s]{0,10}[:.\\s]{0,3}([\\+\\d\\(][\\s\\d\\(\\)\\-\\/\\.]{4,100}\\d)\\b", "PII", EntityType.ENTITY, 2, $section)
.forEach(contactEntity -> contactEntity.redact("PII.2.2", "Found by Phone and Fax Regex", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
.forEach(contactEntity -> contactEntity.redact("PII.2.1", "Found by Phone and Fax Regex", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
end
// Rule unit: PII.3
rule "PII.3.0: Redact telephone numbers by RegEx"
when
$section: Section(matchesRegex("[+]\\d{1,}"))
then
entityCreationService.byRegex("((([+]\\d{1,3} (\\d{7,12})\\b)|([+]\\d{1,3}(\\d{3,12})\\b|[+]\\d{1,3}([ -]\\(?\\d{1,6}\\)?){2,4})|[+]\\d{1,3} ?((\\d{2,6}\\)?)([ -]\\d{2,6}){1,4}))(-\\d{1,3})?\\b)", "PII", EntityType.ENTITY, 1, $section)
.forEach(entity -> entity.redact("PII.3.0", "Telephone number found by regex", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.3.1: Redact telephone numbers by RegEx (Non vertebrate study)"
rule "PII.3.0: Redact telephone numbers by RegEx (Non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(matchesRegex("[+]\\d{1,}"))
then
entityCreationService.byRegex("((([+]\\d{1,3} (\\d{7,12})\\b)|([+]\\d{1,3}(\\d{3,12})\\b|[+]\\d{1,3}([ -]\\(?\\d{1,6}\\)?){2,4})|[+]\\d{1,3} ?((\\d{2,6}\\)?)([ -]\\d{2,6}){1,4}))(-\\d{1,3})?\\b)", "PII", EntityType.ENTITY, 1, $section)
.forEach(entity -> entity.redact("PII.3.1", "Telephone number found by regex", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
.forEach(entity -> entity.redact("PII.3.0", "Telephone number found by regex", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
end
rule "PII.3.2: Redact telephone numbers by RegEx (vertebrate study)"
rule "PII.3.1: Redact telephone numbers by RegEx (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(matchesRegex("[+]\\d{1,}"))
then
entityCreationService.byRegex("((([+]\\d{1,3} (\\d{7,12})\\b)|([+]\\d{1,3}(\\d{3,12})\\b|[+]\\d{1,3}([ -]\\(?\\d{1,6}\\)?){2,4})|[+]\\d{1,3} ?((\\d{2,6}\\)?)([ -]\\d{2,6}){1,4}))(-\\d{1,3})?\\b)", "PII", EntityType.ENTITY, 1, $section)
.forEach(entity -> entity.redact("PII.3.2", "Telephone number found by regex", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
.forEach(entity -> entity.redact("PII.3.1", "Telephone number found by regex", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
end
// Rule unit: PII.4
rule "PII.4.0: Redact line after contact information keywords"
rule "PII.4.0: Redact line after contact information keywords (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$contactKeyword: String() from List.of("Contact point:",
"Contact:",
"Alternative contact:",
@@ -486,9 +424,9 @@ rule "PII.4.0: Redact line after contact information keywords"
.forEach(contactEntity -> contactEntity.redact("PII.4.0", "Found after \"" + $contactKeyword + "\" contact keyword", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.4.1: Redact line after contact information keywords (non vertebrate study)"
rule "PII.4.1: Redact line after contact information keywords (vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$contactKeyword: String() from List.of("Contact point:",
"Contact:",
"Alternative contact:",
@@ -514,49 +452,9 @@ rule "PII.4.1: Redact line after contact information keywords (non vertebrate st
.forEach(contactEntity -> contactEntity.redact("PII.4.1", "Found after \"" + $contactKeyword + "\" contact keyword", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.4.2: Redact line after contact information keywords (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$contactKeyword: String() from List.of("Contact point:",
"Contact:",
"Alternative contact:",
"European contact:",
"No:",
"Contact:",
"Tel.:",
"Tel:",
"Telephone number:",
"Telephone No:",
"Telephone:",
"Phone No.",
"Phone:",
"Fax number:",
"Fax:",
"E-mail:",
"Email:",
"e-mail:",
"E-mail address:")
$section: Section(containsString($contactKeyword))
then
entityCreationService.lineAfterString($contactKeyword, "PII", EntityType.ENTITY, $section)
.forEach(contactEntity -> contactEntity.redact("PII.4.2", "Found after \"" + $contactKeyword + "\" contact keyword", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
// Rule unit: PII.5
rule "PII.5.0: Redact line after contact information keywords reduced"
when
$contactKeyword: String() from List.of("Contact point:",
"Contact:",
"Alternative contact:",
"European contact:")
$section: Section(containsString($contactKeyword))
then
entityCreationService.lineAfterString($contactKeyword, "PII", EntityType.ENTITY, $section)
.forEach(contactEntity -> contactEntity.redact("PII.5.0", "Found after \"" + $contactKeyword + "\" contact keyword", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.5.1: Redact line after contact information keywords reduced (non vertebrate study)"
rule "PII.5.0: Redact line after contact information keywords reduced (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$contactKeyword: String() from List.of("Contact point:",
@@ -566,10 +464,10 @@ rule "PII.5.1: Redact line after contact information keywords reduced (non verte
$section: Section(containsString($contactKeyword))
then
entityCreationService.lineAfterString($contactKeyword, "PII", EntityType.ENTITY, $section)
.forEach(contactEntity -> contactEntity.redact("PII.5.1", "Found after \"" + $contactKeyword + "\" contact keyword", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
.forEach(contactEntity -> contactEntity.redact("PII.5.0", "Found after \"" + $contactKeyword + "\" contact keyword", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
end
rule "PII.5.2: Redact line after contact information keywords reduced (Vertebrate study)"
rule "PII.5.1: Redact line after contact information keywords reduced (Vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$contactKeyword: String() from List.of("Contact point:",
@@ -579,23 +477,12 @@ rule "PII.5.2: Redact line after contact information keywords reduced (Vertebrat
$section: Section(containsString($contactKeyword))
then
entityCreationService.lineAfterString($contactKeyword, "PII", EntityType.ENTITY, $section)
.forEach(contactEntity -> contactEntity.redact("PII.5.2", "Found after \"" + $contactKeyword + "\" contact keyword", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
.forEach(contactEntity -> contactEntity.redact("PII.5.1", "Found after \"" + $contactKeyword + "\" contact keyword", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
end
// Rule unit: PII.6
rule "PII.6.0: Redact line between contact keywords"
when
$section: Section((containsString("No:") && containsString("Fax")) || (containsString("Contact:") && containsString("Tel")))
then
Stream.concat(
entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
)
.forEach(contactEntity -> contactEntity.redact("PII.6.0", "Found between contact keywords", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.6.1: Redact line between contact keywords (non vertebrate study)"
rule "PII.6.0: Redact line between contact keywords (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section((containsString("No:") && containsString("Fax")) || (containsString("Contact:") && containsString("Tel")))
@@ -604,10 +491,10 @@ rule "PII.6.1: Redact line between contact keywords (non vertebrate study)"
entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
)
.forEach(contactEntity -> contactEntity.redact("PII.6.1", "Found between contact keywords", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
.forEach(contactEntity -> contactEntity.redact("PII.6.0", "Found between contact keywords", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
end
rule "PII.6.2: Redact line between contact keywords (vertebrate study)"
rule "PII.6.1: Redact line between contact keywords (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section((containsString("No:") && containsString("Fax")) || (containsString("Contact:") && containsString("Tel")))
@@ -616,28 +503,12 @@ rule "PII.6.2: Redact line between contact keywords (vertebrate study)"
entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
)
.forEach(contactEntity -> contactEntity.redact("PII.6.2", "Found between contact keywords", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
.forEach(contactEntity -> contactEntity.redact("PII.6.1", "Found between contact keywords", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
end
// Rule unit: PII.7
rule "PII.7.0: Redact contact information if applicant is found"
when
$section: Section(getHeadline().containsString("applicant") ||
getHeadline().containsString("Primary contact") ||
getHeadline().containsString("Alternative contact") ||
containsString("Applicant") ||
containsString("Telephone number:"))
then
Stream.concat(entityCreationService.lineAfterStrings(List.of("Contact point:", "Contact:", "Alternative contact:", "European contact:", "No:", "Contact:", "Tel.:", "Tel:", "Telephone number:",
"Telephone No:", "Telephone:", "Phone No.", "Phone:", "Fax number:", "Fax:", "E-mail:", "Email:", "e-mail:", "E-mail address:"), "PII", EntityType.ENTITY, $section),
Stream.concat(
entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
))
.forEach(entity -> entity.redact("PII.7.0", "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.7.1: Redact contact information if applicant is found (non vertebrate study)"
rule "PII.7.0: Redact contact information if applicant is found (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(getHeadline().containsString("applicant") ||
@@ -652,10 +523,10 @@ rule "PII.7.1: Redact contact information if applicant is found (non vertebrate
entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
))
.forEach(entity -> entity.redact("PII.7.1", "Applicant information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
.forEach(entity -> entity.redact("PII.7.0", "Applicant information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
end
rule "PII.7.2: Redact contact information if applicant is found (vertebrate study)"
rule "PII.7.1: Redact contact information if applicant is found (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(getHeadline().containsString("applicant") ||
@@ -670,13 +541,14 @@ rule "PII.7.2: Redact contact information if applicant is found (vertebrate stud
entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
))
.forEach(entity -> entity.redact("PII.7.2", "Applicant information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
.forEach(entity -> entity.redact("PII.7.1", "Applicant information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
end
// Rule unit: PII.8
rule "PII.8.0: Redact contact information if producer is found"
rule "PII.8.0: Redact contact information if producer is found (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(containsStringIgnoreCase("producer of the plant protection") ||
containsStringIgnoreCase("producer of the active substance") ||
containsStringIgnoreCase("manufacturer of the active substance") ||
@@ -692,25 +564,7 @@ rule "PII.8.0: Redact contact information if producer is found"
.forEach(entity -> entity.redact("PII.8.0", "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.8.1: Redact contact information if producer is found (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(containsStringIgnoreCase("producer of the plant protection") ||
containsStringIgnoreCase("producer of the active substance") ||
containsStringIgnoreCase("manufacturer of the active substance") ||
containsStringIgnoreCase("manufacturer:") ||
containsStringIgnoreCase("Producer or producers of the active substance"))
then
Stream.concat(entityCreationService.lineAfterStrings(List.of("Contact point:", "Contact:", "Alternative contact:", "European contact:", "No:", "Contact:", "Tel.:", "Tel:", "Telephone number:",
"Telephone No:", "Telephone:", "Phone No.", "Phone:", "Fax number:", "Fax:", "E-mail:", "Email:", "e-mail:", "E-mail address:"), "PII", EntityType.ENTITY, $section),
Stream.concat(
entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
))
.forEach(entity -> entity.redact("PII.8.1", "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.8.2: Redact contact information if producer is found (vertebrate study)"
rule "PII.8.1: Redact contact information if producer is found (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(containsStringIgnoreCase("producer of the plant protection") ||
@@ -725,35 +579,27 @@ rule "PII.8.2: Redact contact information if producer is found (vertebrate study
entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
))
.forEach(entity -> entity.redact("PII.8.2", "Producer was found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
.forEach(entity -> entity.redact("PII.8.1", "Producer was found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
end
// Rule unit: PII.9
rule "PII.9.0: Redact between \"AUTHOR(S)\" and \"(STUDY) COMPLETION DATE\""
when
$document: Document(containsStringIgnoreCase("AUTHOR(S)"), containsAnyStringIgnoreCase("COMPLETION DATE", "STUDY COMPLETION DATE"))
then
entityCreationService.shortestBetweenAnyStringIgnoreCase(List.of("AUTHOR(S)", "AUTHOR(S):"), List.of("COMPLETION DATE", "COMPLETION DATE:", "STUDY COMPLETION DATE", "STUDY COMPLETION DATE:"), "PII", EntityType.ENTITY, $document)
.forEach(authorEntity -> authorEntity.redact("PII.9.0", "AUTHOR(S) was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.9.1: Redact between \"AUTHOR(S)\" and \"(STUDY) COMPLETION DATE\" (non vertebrate study)"
rule "PII.9.0: Redact between \"AUTHOR(S)\" and \"(STUDY) COMPLETION DATE\" (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$document: Document(containsStringIgnoreCase("AUTHOR(S)"), containsAnyStringIgnoreCase("COMPLETION DATE", "STUDY COMPLETION DATE"))
then
entityCreationService.shortestBetweenAnyStringIgnoreCase(List.of("AUTHOR(S)", "AUTHOR(S):"), List.of("COMPLETION DATE", "COMPLETION DATE:", "STUDY COMPLETION DATE", "STUDY COMPLETION DATE:"), "PII", EntityType.ENTITY, $document)
.forEach(authorEntity -> authorEntity.redact("PII.9.1", "AUTHOR(S) was found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
.forEach(authorEntity -> authorEntity.redact("PII.9.0", "AUTHOR(S) was found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
end
rule "PII.9.2: Redact between \"AUTHOR(S)\" and \"(STUDY) COMPLETION DATE\" (vertebrate study)"
rule "PII.9.1: Redact between \"AUTHOR(S)\" and \"(STUDY) COMPLETION DATE\" (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$document: Document(containsStringIgnoreCase("AUTHOR(S)"), containsAnyStringIgnoreCase("COMPLETION DATE", "STUDY COMPLETION DATE"))
then
entityCreationService.shortestBetweenAnyStringIgnoreCase(List.of("AUTHOR(S)", "AUTHOR(S):"), List.of("COMPLETION DATE", "COMPLETION DATE:", "STUDY COMPLETION DATE", "STUDY COMPLETION DATE:"), "PII", EntityType.ENTITY, $document)
.forEach(authorEntity -> authorEntity.redact("PII.9.2", "AUTHOR(S) was found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
.forEach(authorEntity -> authorEntity.redact("PII.9.1", "AUTHOR(S) was found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
end
@@ -810,52 +656,38 @@ rule "ETC.0.0: Purity Hint"
// Rule unit: ETC.2
rule "ETC.2.0: Redact signatures"
when
$signature: Image(imageType == ImageType.SIGNATURE)
then
$signature.redact("ETC.2.0", "Signature Found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
end
rule "ETC.2.1: Redact signatures (non vertebrate study)"
rule "ETC.2.0: Redact signatures (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$signature: Image(imageType == ImageType.SIGNATURE)
then
$signature.redact("ETC.2.1", "Signature Found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
$signature.redact("ETC.2.0", "Signature Found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
end
rule "ETC.2.2: Redact signatures (vertebrate study)"
rule "ETC.2.1: Redact signatures (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$signature: Image(imageType == ImageType.SIGNATURE)
then
$signature.redact("ETC.2.2", "Signature Found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
$signature.redact("ETC.2.1", "Signature Found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
end
// Rule unit: ETC.3
rule "ETC.3.0: Redact logos"
when
$logo: Image(imageType == ImageType.LOGO)
then
$logo.redact("ETC.3.0", "Logo Found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
end
rule "ETC.3.1: Skip logos (non vertebrate study)"
rule "ETC.3.0: Skip logos (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$logo: Image(imageType == ImageType.LOGO)
then
$logo.skip("ETC.3.1", "Logo Found");
$logo.skip("ETC.3.0", "Logo Found");
end
rule "ETC.3.2: Redact logos (vertebrate study)"
rule "ETC.3.1: Redact logos (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$logo: Image(imageType == ImageType.LOGO)
then
$logo.redact("ETC.3.2", "Logo Found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
$logo.redact("ETC.3.1", "Logo Found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
end
@@ -870,7 +702,6 @@ rule "ETC.5.0: Skip dossier_redaction entries if confidentiality is 'confidentia
end
rule "ETC.5.1: Remove dossier_redaction entries if confidentiality is not 'confidential'"
salience 256
when
not FileAttribute(label == "Confidentiality", value == "confidential")
$dossierRedaction: TextEntity(type() == "dossier_redaction")
@@ -1193,6 +1024,27 @@ rule "X.8.1: Remove Entity when intersected by imported Entity"
end
// Rule unit: X.9
rule "X.9.0: Merge mostly contained signatures"
when
$aiSignature: Image(imageType == ImageType.SIGNATURE, engines contains LayoutEngine.AI)
$signature: Image(imageType == ImageType.SIGNATURE, engines contains LayoutEngine.ALGORITHM, mostlyContains($aiSignature, 0.8))
then
$aiSignature.remove("X.9.0", "removed because already contained by alogrithm signature");
$signature.addEngine(LayoutEngine.AI);
end
// Rule unit: X.10
rule "X.10.0: remove false positives of ai"
when
$anyImage: Image(engines contains LayoutEngine.ALGORITHM)
$aiSignature: Image(imageType == ImageType.SIGNATURE, engines contains LayoutEngine.AI, !mostlyContainedBy($anyImage, 0.8))
then
$aiSignature.remove("X.10.0", "Removed because false positive");
end
//------------------------------------ File attributes rules ------------------------------------
// Rule unit: FA.1
@@ -54,6 +54,8 @@ import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.ManualRecategorization;
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.ManualLegalBasisChange;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.LayoutEngine;
global Document document
global EntityCreationService entityCreationService
global ManualChangesApplicationService manualChangesApplicationService
@@ -157,18 +159,17 @@ rule "CBI.3.0: Redacted because Section contains a vertebrate"
rule "CBI.3.1: Redacted because table row contains a vertebrate"
when
$table: Table(hasEntitiesOfType("vertebrate"), (hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address")))
$table: Table(hasEntitiesOfType("vertebrate"), hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address"))
$cellsWithvertebrate: TableCell() from $table.streamTableCellsWhichContainType("vertebrate").toList()
$tableCell: TableCell(row == $cellsWithvertebrate.row) from $table.streamTableCells().toList()
$authorOrAddress: TextEntity(type() == "CBI_author" || type() == "CBI_address", active()) from $tableCell.getEntities()
then
$table.streamEntitiesWhereRowContainsEntitiesOfType(List.of("vertebrate"))
.filter(entity -> entity.getType().equals("CBI_author") || entity.getType().equals("CBI_address"))
.forEach(entity -> {
entity.applyWithReferences(
$authorOrAddress.applyWithReferences(
"CBI.3.1",
"Vertebrate found",
"Reg (EC) No 1107/2009 Art. 63 (2g)",
$table.getEntitiesOfTypeInSameRow("vertebrate", entity)
$table.getEntitiesOfTypeInSameRow("vertebrate", $authorOrAddress)
);
});
end
rule "CBI.3.2: Do not redact because Section does not contain a vertebrate"
@@ -207,23 +208,21 @@ rule "CBI.4.0: Do not redact Names and Addresses if no_redaction_indicator is fo
});
end
rule "CBI.4.1: Don't redact authors or addresses which appear in the same row as a vertebrate and a no_redaction_indicator"
rule "CBI.4.1: Redacted because table row contains a vertebrate"
when
$table: Table(hasEntitiesOfType("no_redaction_indicator"),
hasEntitiesOfType("vertebrate"),
(hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address")))
$table: Table(hasEntitiesOfType("no_redaction_indicator"), hasEntitiesOfType("vertebrate"), hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address"))
TableCell($row: row) from $table.streamTableCellsWhichContainType("vertebrate").toList()
TableCell(row == $row) from $table.streamTableCellsWhichContainType("no_redaction_indicator").toList()
$tableCell: TableCell(row == $row) from $table.streamTableCells().toList()
$authorOrAddress: TextEntity(type() == "CBI_author" || type() == "CBI_address", active()) from $tableCell.getEntities()
then
$table.streamEntitiesWhereRowContainsEntitiesOfType(List.of("vertebrate", "no-redaction_indicator"))
.filter(entity -> entity.getType().equals("CBI_author") || entity.getType().equals("CBI_address"))
.forEach(entity -> {
entity.skipWithReferences(
$authorOrAddress.skipWithReferences(
"CBI.4.1",
"Vertebrate but a no redaction indicator found",
Stream.concat(
$table.getEntitiesOfTypeInSameRow("vertebrate", entity).stream(),
$table.getEntitiesOfTypeInSameRow("no_redaction_indicator", entity).stream()).toList()
$table.getEntitiesOfTypeInSameRow("vertebrate", $authorOrAddress).stream(),
$table.getEntitiesOfTypeInSameRow("no_redaction_indicator", $authorOrAddress).stream()).toList()
);
});
end
@@ -250,22 +249,20 @@ rule "CBI.5.0: Redact Names and Addresses if no_redaction_indicator but also red
rule "CBI.5.1: Redact Names and Addresses if no_redaction_indicator but also redaction_indicator is found in table row"
when
$table: Table(hasEntitiesOfType("no_redaction_indicator"),
hasEntitiesOfType("redaction_indicator"),
(hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address")))
$table: Table(hasEntitiesOfType("no_redaction_indicator"), hasEntitiesOfType("redaction_indicator"), hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address"))
TableCell($row: row) from $table.streamTableCellsWhichContainType("redaction_indicator").toList()
TableCell(row == $row) from $table.streamTableCellsWhichContainType("no_redaction_indicator").toList()
$tableCell: TableCell(row == $row) from $table.streamTableCells().toList()
$entity: TextEntity(type() == "CBI_author" || type() == "CBI_address", active()) from $tableCell.getEntities()
then
$table.streamEntitiesWhereRowContainsEntitiesOfType(List.of("redaction_indicator", "no_redaction_indicator"))
.filter(entity -> entity.getType().equals("CBI_author") || entity.getType().equals("CBI_address"))
.forEach(entity -> {
entity.applyWithReferences(
$entity.applyWithReferences(
"CBI.5.1",
"no_redaction_indicator but also redaction_indicator found",
"Reg (EC) No 1107/2009 Art. 63 (2g)",
Stream.concat(
$table.getEntitiesOfTypeInSameRow("redaction_indicator", entity).stream(),
$table.getEntitiesOfTypeInSameRow("no_redaction_indicator", entity).stream()).toList()
$table.getEntitiesOfTypeInSameRow("redaction_indicator", $entity).stream(),
$table.getEntitiesOfTypeInSameRow("no_redaction_indicator", $entity).stream()).toList()
);
});
end
@@ -355,18 +352,17 @@ rule "CBI.8.0: Redacted because Section contains must_redact entity"
rule "CBI.8.1: Redacted because table row contains must_redact entity"
when
$table: Table(hasEntitiesOfType("must_redact"), (hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address")))
$table: Table(hasEntitiesOfType("must_redact"), hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address"))
$cellsWithMustRedact: TableCell() from $table.streamTableCellsWhichContainType("must_redact").toList()
$tableCell: TableCell(row == $cellsWithMustRedact.row) from $table.streamTableCells().toList()
$authorOrAddress: TextEntity(type() == "CBI_author" || type() == "CBI_address", active()) from $tableCell.getEntities()
then
$table.streamEntitiesWhereRowContainsEntitiesOfType(List.of("must_redact"))
.filter(entity -> entity.getType().equals("CBI_author") || entity.getType().equals("CBI_address"))
.forEach(entity -> {
entity.applyWithReferences(
"CBI.8.1",
"Must_redact found",
"Reg (EC) No 1107/2009 Art. 63 (2g)",
$table.getEntitiesOfTypeInSameRow("must_redact", entity)
);
});
$authorOrAddress.applyWithReferences(
"CBI.8.1",
"Must_redact found",
"Reg (EC) No 1107/2009 Art. 63 (2g)",
$table.getEntitiesOfTypeInSameRow("must_redact", $authorOrAddress)
);
end
@@ -438,22 +434,7 @@ rule "CBI.11.0: Recommend all CBI_author entities in Table with Vertebrate Study
// Rule unit: CBI.12
rule "CBI.12.0: Redact and recommend TableCell with header 'Author' or 'Author(s)' and header 'Vertebrate study Y/N' with value 'Yes'"
agenda-group "LOCAL_DICTIONARY_ADDS"
when
$table: Table(hasHeader("Author(s)") || hasHeader("Author"), hasHeaderIgnoreCase("Vertebrate Study Y/N"))
TableCell(header, containsAnyStringIgnoreCase("Author", "Author(s)"), $authorCol: col) from $table.streamHeaders().toList()
TableCell(header, containsStringIgnoreCase("Vertebrate study Y/N"), $vertebrateCol: col) from $table.streamHeaders().toList()
$rowCell: TableCell(!header, containsAnyString("Yes", "Y"), $rowWithYes: row) from $table.streamCol($vertebrateCol).toList()
TableCell(row == $rowWithYes) from $table.streamCol($authorCol).toList()
then
entityCreationService.bySemanticNode($rowCell, "must_redact", EntityType.HINT)
.ifPresent(yesEntity -> {
yesEntity.skip("CBI.12.0", "must_redact");
});
end
rule "CBI.12.1: Redact and recommend TableCell with header 'Author' or 'Author(s)' and header 'Vertebrate study Y/N' with value 'Yes' (non vertebrate study)"
rule "CBI.12.0: Redact and recommend TableCell with header 'Author' or 'Author(s)' and header 'Vertebrate study Y/N' with value 'Yes' (non vertebrate study)"
agenda-group "LOCAL_DICTIONARY_ADDS"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
@@ -465,13 +446,13 @@ rule "CBI.12.1: Redact and recommend TableCell with header 'Author' or 'Author(s
then
entityCreationService.bySemanticNode($authorCell, "CBI_author", EntityType.ENTITY)
.ifPresent(authorEntity -> {
authorEntity.redact("CBI.12.1", "Redacted because it's row belongs to a vertebrate study", "Article 39(e)(3) of Regulation (EC) No 178/2002");
authorEntity.redact("CBI.12.0", "Redacted because it's row belongs to a vertebrate study", "Article 39(e)(3) of Regulation (EC) No 178/2002");
dictionary.addMultipleAuthorsAsRecommendation(authorEntity);
});
end
rule "CBI.12.2: Redact and recommend TableCell with header 'Author' or 'Author(s)' and header 'Vertebrate study Y/N' with value 'Yes' (vertebrate study)"
rule "CBI.12.1: Redact and recommend TableCell with header 'Author' or 'Author(s)' and header 'Vertebrate study Y/N' with value 'Yes' (vertebrate study)"
agenda-group "LOCAL_DICTIONARY_ADDS"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
@@ -484,13 +465,13 @@ rule "CBI.12.2: Redact and recommend TableCell with header 'Author' or 'Author(s
entityCreationService.bySemanticNode($authorCell, "CBI_author", EntityType.ENTITY)
.ifPresent(authorEntity -> {
authorEntity.redact("CBI.12.2", "Redacted because it's row belongs to a vertebrate study", "Article 39(e)(2) of Regulation (EC) No 178/2002");
authorEntity.redact("CBI.12.1", "Redacted because it's row belongs to a vertebrate study", "Article 39(e)(2) of Regulation (EC) No 178/2002");
dictionary.addMultipleAuthorsAsRecommendation(authorEntity);
});
end
rule "CBI.12.3: Skip TableCell with header 'Author' or 'Author(s)' and header 'Vertebrate study Y/N' with value 'No'"
rule "CBI.12.2: Skip TableCell with header 'Author' or 'Author(s)' and header 'Vertebrate study Y/N' with value 'No'"
when
$table: Table(hasHeader("Author(s)") || hasHeader("Author"), hasHeaderIgnoreCase("Vertebrate Study Y/N"))
TableCell(header, containsAnyStringIgnoreCase("Author", "Author(s)"), $authorCol: col) from $table.streamHeaders().toList()
@@ -499,7 +480,7 @@ rule "CBI.12.3: Skip TableCell with header 'Author' or 'Author(s)' and header 'V
$authorCell: TableCell(row == $rowWithNo) from $table.streamCol($authorCol).toList()
then
entityCreationService.bySemanticNode($authorCell, "CBI_author", EntityType.ENTITY)
.ifPresent(authorEntity -> authorEntity.skip("CBI.12.3", "Not redacted because it's row does not belong to a vertebrate study"));
.ifPresent(authorEntity -> authorEntity.skip("CBI.12.2", "Not redacted because it's row does not belong to a vertebrate study"));
end
@@ -517,12 +498,9 @@ rule "CBI.13.0: Ignore CBI Address recommendations"
// Rule unit: CBI.14
rule "CBI.14.0: Redact CBI_sponsor entities if preceded by \"batches produced at\""
when
$section: Section(containsStringIgnoreCase("batches produced at"))
$sponsorEntity: TextEntity(type() == "CBI_sponsor", textBefore.contains("batches produced at"))
then
$sponsorEntity.redact("CBI.14.0", "Redacted because it represents a sponsor company", "Reg (EC) No 1107/2009 Art. 63 (2g)");
entityCreationService.byString("batches produced at", "must_redact", EntityType.HINT, $section)
.forEach(entity -> entity.skip("CBI.14.0", "must_redact"));
end
@@ -543,10 +521,10 @@ rule "CBI.15.0: Redact row if row contains \"determination of residues\" and liv
containsStringIgnoreCase($residueKeyword),
containsStringIgnoreCase($keyword))
then
entityCreationService.byString($keyword, "must_redact", EntityType.HINT, $section)
.forEach(entity -> entity.skip("CBI.15.0", "must_redact"));
entityCreationService.byString($keyword, "must_redact", EntityType.ENTITY, $section)
.toList();
$section.getEntitiesOfType(List.of("CBI_author", "CBI_address"))
$section.getEntitiesOfType(List.of($keyword, $residueKeyword))
.forEach(redactionEntity -> redactionEntity.redact("CBI.15.0", "Determination of residues and keyword \"" + $keyword + "\" was found.", "Reg (EC) No 1107/2009 Art. 63 (2g)"));
end
@@ -564,8 +542,8 @@ rule "CBI.15.1: Redact CBI_author and CBI_address if row contains \"determinatio
$residueKeyword: String() from List.of("determination of residues", "determination of total residues")
$table: Table(containsStringIgnoreCase($residueKeyword), containsStringIgnoreCase($keyword))
then
entityCreationService.byString($keyword, "must_redact", EntityType.HINT, $table)
.forEach(entity -> entity.skip("CBI.15.1", "must_redact"));
entityCreationService.byString($keyword, "must_redact", EntityType.ENTITY, $table)
.toList();
$table.streamEntitiesWhereRowContainsStringsIgnoreCase(List.of($keyword, $residueKeyword))
.filter(redactionEntity -> redactionEntity.isAnyType(List.of("CBI_author", "CBI_address")))
@@ -574,19 +552,7 @@ rule "CBI.15.1: Redact CBI_author and CBI_address if row contains \"determinatio
// Rule unit: CBI.16
rule "CBI.16.0: Add CBI_author with \"et al.\" RegEx"
agenda-group "LOCAL_DICTIONARY_ADDS"
when
$section: Section(containsString("et al."))
then
entityCreationService.byRegex("\\b([A-ZÄÖÜ][^\\s\\.,]+( [A-ZÄÖÜ]{1,2}\\.?)?( ?[A-ZÄÖÜ]\\.?)?) et al\\.?", "CBI_author", EntityType.ENTITY, 1, $section)
.forEach(entity -> {
entity.redact("CBI.16.0", "Author found by \"et al\" regex", "Reg (EC) No 1107/2009 Art. 63 (2g)");
dictionary.recommendEverywhere(entity);
});
end
rule "CBI.16.1: Add CBI_author with \"et al.\" RegEx (non vertebrate study)"
rule "CBI.16.0: Add CBI_author with \"et al.\" RegEx (non vertebrate study)"
agenda-group "LOCAL_DICTIONARY_ADDS"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
@@ -594,12 +560,12 @@ rule "CBI.16.1: Add CBI_author with \"et al.\" RegEx (non vertebrate study)"
then
entityCreationService.byRegex("\\b([A-ZÄÖÜ][^\\s\\.,]+( [A-ZÄÖÜ]{1,2}\\.?)?( ?[A-ZÄÖÜ]\\.?)?) et al\\.?", "CBI_author", EntityType.ENTITY, 1, $section)
.forEach(entity -> {
entity.redact("CBI.16.1", "Author found by \"et al\" regex", "Article 39(e)(3) of Regulation (EC) No 178/2002");
entity.redact("CBI.16.0", "Author found by \"et al\" regex", "Article 39(e)(3) of Regulation (EC) No 178/2002");
dictionary.recommendEverywhere(entity);
});
end
rule "CBI.16.2: Add CBI_author with \"et al.\" RegEx (vertebrate study)"
rule "CBI.16.1: Add CBI_author with \"et al.\" RegEx (vertebrate study)"
agenda-group "LOCAL_DICTIONARY_ADDS"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
@@ -607,7 +573,7 @@ rule "CBI.16.2: Add CBI_author with \"et al.\" RegEx (vertebrate study)"
then
entityCreationService.byRegex("\\b([A-ZÄÖÜ][^\\s\\.,]+( [A-ZÄÖÜ]{1,2}\\.?)?( ?[A-ZÄÖÜ]\\.?)?) et al\\.?", "CBI_author", EntityType.ENTITY, 1, $section)
.forEach(entity -> {
entity.redact("CBI.16.2", "Author found by \"et al\" regex", "Article 39(e)(2) of Regulation (EC) No 178/2002");
entity.redact("CBI.16.1", "Author found by \"et al\" regex", "Article 39(e)(2) of Regulation (EC) No 178/2002");
dictionary.recommendEverywhere(entity);
});
end
@@ -665,19 +631,7 @@ rule "CBI.19.0: Expand CBI_author entities with salutation prefix"
// Rule unit: CBI.20
rule "CBI.20.0: Redact between \"PERFORMING LABORATORY\" and \"LABORATORY PROJECT ID:\")"
agenda-group "LOCAL_DICTIONARY_ADDS"
when
$section: Section(!hasTables(), containsString("PERFORMING LABORATORY:"), containsString("LABORATORY PROJECT ID:"))
then
entityCreationService.betweenStrings("PERFORMING LABORATORY:", "LABORATORY PROJECT ID:", "CBI_address", EntityType.ENTITY, $section)
.forEach(laboratoryEntity -> {
laboratoryEntity.redact("CBI.20.0", "PERFORMING LABORATORY was found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
dictionary.recommendEverywhere(laboratoryEntity);
});
end
rule "CBI.20.1: Redact between \"PERFORMING LABORATORY\" and \"LABORATORY PROJECT ID:\" (non vertebrate study)"
rule "CBI.20.0: Redact between \"PERFORMING LABORATORY\" and \"LABORATORY PROJECT ID:\" (non vertebrate study)"
agenda-group "LOCAL_DICTIONARY_ADDS"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
@@ -685,12 +639,12 @@ rule "CBI.20.1: Redact between \"PERFORMING LABORATORY\" and \"LABORATORY PROJEC
then
entityCreationService.betweenStrings("PERFORMING LABORATORY:", "LABORATORY PROJECT ID:", "CBI_address", EntityType.ENTITY, $section)
.forEach(laboratoryEntity -> {
laboratoryEntity.skip("CBI.20.1", "PERFORMING LABORATORY was found for non vertebrate study");
laboratoryEntity.skip("CBI.20.0", "PERFORMING LABORATORY was found for non vertebrate study");
dictionary.recommendEverywhere(laboratoryEntity);
});
end
rule "CBI.20.2: Redact between \"PERFORMING LABORATORY\" and \"LABORATORY PROJECT ID:\" (vertebrate study)"
rule "CBI.20.1: Redact between \"PERFORMING LABORATORY\" and \"LABORATORY PROJECT ID:\" (vertebrate study)"
agenda-group "LOCAL_DICTIONARY_ADDS"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
@@ -698,7 +652,7 @@ rule "CBI.20.2: Redact between \"PERFORMING LABORATORY\" and \"LABORATORY PROJEC
then
entityCreationService.betweenStrings("PERFORMING LABORATORY:", "LABORATORY PROJECT ID:", "CBI_address", EntityType.ENTITY, $section)
.forEach(laboratoryEntity -> {
laboratoryEntity.redact("CBI.20.2", "PERFORMING LABORATORY was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
laboratoryEntity.redact("CBI.20.1", "PERFORMING LABORATORY was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
dictionary.recommendEverywhere(laboratoryEntity);
});
end
@@ -745,94 +699,53 @@ rule "CBI.22.0: Redact Addresses in Reference Tables for vertebrate studies in n
//------------------------------------ PII rules ------------------------------------
// Rule unit: PII.0
rule "PII.0.0: Redact all PII"
when
$pii: TextEntity(type() == "PII", dictionaryEntry)
then
$pii.redact("PII.0.0", "Personal Information found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
end
rule "PII.0.1: Redact all PII (non vertebrate study)"
rule "PII.0.0: Redact all PII (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$pii: TextEntity(type() == "PII", dictionaryEntry)
then
$pii.redact("PII.0.1", "Personal Information found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
$pii.redact("PII.0.0", "Personal Information found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
end
rule "PII.0.2: Redact all PII (vertebrate study)"
rule "PII.0.1: Redact all PII (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$pii: TextEntity(type() == "PII", dictionaryEntry)
then
$pii.redact("PII.0.2", "Personal Information found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
$pii.redact("PII.0.1", "Personal Information found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
end
// Rule unit: PII.1
rule "PII.1.0: Redact Emails by RegEx"
when
$section: Section(containsString("@"))
then
entityCreationService.byRegex("\\b([A-Za-z0-9._%+\\-]+@[A-Za-z0-9.\\-]+\\.[A-Za-z\\-]{1,23}[A-Za-z])\\b", "PII", EntityType.ENTITY, 1, $section)
.forEach(emailEntity -> emailEntity.redact("PII.1.0", "Found by Email Regex", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.1.1: Redact Emails by RegEx (Non vertebrate study)"
rule "PII.1.0: Redact Emails by RegEx (Non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(containsString("@"))
then
entityCreationService.byRegex("\\b([A-Za-z0-9._%+\\-]+@[A-Za-z0-9.\\-]+\\.[A-Za-z\\-]{1,23}[A-Za-z])\\b", "PII", EntityType.ENTITY, 1, $section)
.forEach(emailEntity -> emailEntity.redact("PII.1.1", "Found by Email Regex", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
.forEach(emailEntity -> emailEntity.redact("PII.1.0", "Found by Email Regex", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
end
rule "PII.1.2: Redact Emails by RegEx (vertebrate study)"
rule "PII.1.1: Redact Emails by RegEx (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(containsString("@"))
then
entityCreationService.byRegex("\\b([A-Za-z0-9._%+\\-]+@[A-Za-z0-9.\\-]+\\.[A-Za-z\\-]{1,23}[A-Za-z])\\b", "PII", EntityType.ENTITY, 1, $section)
.forEach(emailEntity -> emailEntity.redact("PII.1.2", "Found by Email Regex", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
.forEach(emailEntity -> emailEntity.redact("PII.1.1", "Found by Email Regex", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
end
rule "PII.1.3: Redact typoed Emails with indicator"
rule "PII.1.2: Redact typoed Emails with indicator"
when
$section: Section(containsString("@") || containsStringIgnoreCase("mail"))
then
entityCreationService.byRegexIgnoreCase("mail[:\\.\\s]{1,2}([\\w\\/\\-\\{\\(\\. ]{3,20}(@|a|f)\\s?[\\w\\/\\-\\{\\(\\. ]{3,20}(\\. \\w{2,4}\\b|\\.\\B|\\.\\w{1,4}\\b))", "PII", EntityType.ENTITY, 1, $section)
.forEach(emailEntity -> emailEntity.redact("PII.1.3", "Personal information found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
end
rule "PII.1.4: Redact typoed Emails with indicator"
when
$section: Section(containsString("@") || containsStringIgnoreCase("mail"))
then
entityCreationService.byRegexIgnoreCase("mail[:\\.\\s]{1,2}([\\w\\/\\-\\{\\(\\. ]{3,20}(@|a|f)\\s?[\\w\\/\\-\\{\\(\\. ]{3,20}(\\. \\w{2,4}\\b|\\.\\B|\\.\\w{1,4}\\b))", "PII", EntityType.ENTITY, 1, $section)
.forEach(emailEntity -> emailEntity.redact("PII.1.4", "Personal information found", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
.forEach(emailEntity -> emailEntity.redact("PII.1.2", "Personal information found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
end
// Rule unit: PII.2
rule "PII.2.0: Redact Phone and Fax by RegEx"
when
$section: Section(containsString("Contact") ||
containsString("Telephone") ||
containsString("Phone") ||
containsString("Ph.") ||
containsString("Fax") ||
containsString("Tel") ||
containsString("Ter") ||
containsString("Mobile") ||
containsString("Fel") ||
containsString("Fer"))
then
entityCreationService.byRegexIgnoreCase("\\b(contact|telephone|phone|ph\\.|fax|tel|ter|mobile|fel|fer)[a-zA-Z\\s]{0,10}[:.\\s]{0,3}([\\+\\d\\(][\\s\\d\\(\\)\\-\\/\\.]{4,100}\\d)\\b", "PII", EntityType.ENTITY, 2, $section)
.forEach(contactEntity -> contactEntity.redact("PII.2.0", "Found by Phone and Fax Regex", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.2.1: Redact Phone and Fax by RegEx (non vertebrate study)"
rule "PII.2.0: Redact Phone and Fax by RegEx (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(containsString("Contact") ||
@@ -847,10 +760,10 @@ rule "PII.2.1: Redact Phone and Fax by RegEx (non vertebrate study)"
containsString("Fer"))
then
entityCreationService.byRegexIgnoreCase("\\b(contact|telephone|phone|ph\\.|fax|tel|ter|mobile|fel|fer)[a-zA-Z\\s]{0,10}[:.\\s]{0,3}([\\+\\d\\(][\\s\\d\\(\\)\\-\\/\\.]{4,100}\\d)\\b", "PII", EntityType.ENTITY, 2, $section)
.forEach(contactEntity -> contactEntity.redact("PII.2.1", "Found by Phone and Fax Regex", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
.forEach(contactEntity -> contactEntity.redact("PII.2.0", "Found by Phone and Fax Regex", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
end
rule "PII.2.2: Redact Phone and Fax by RegEx (vertebrate study)"
rule "PII.2.1: Redact Phone and Fax by RegEx (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(containsString("Contact") ||
@@ -865,49 +778,42 @@ rule "PII.2.2: Redact Phone and Fax by RegEx (vertebrate study)"
containsString("Fer"))
then
entityCreationService.byRegexIgnoreCase("\\b(contact|telephone|phone|ph\\.|fax|tel|ter|mobile|fel|fer)[a-zA-Z\\s]{0,10}[:.\\s]{0,3}([\\+\\d\\(][\\s\\d\\(\\)\\-\\/\\.]{4,100}\\d)\\b", "PII", EntityType.ENTITY, 2, $section)
.forEach(contactEntity -> contactEntity.redact("PII.2.2", "Found by Phone and Fax Regex", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
.forEach(contactEntity -> contactEntity.redact("PII.2.1", "Found by Phone and Fax Regex", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
end
rule "PII.2.3: Redact phone numbers without indicators"
rule "PII.2.2: Redact phone numbers without indicators"
when
$section: Section(containsString("+"))
then
entityCreationService.byRegex("(\\+[\\dO]{1,2} )(\\([\\dO]{1,3}\\))?[\\d\\-O ]{8,15}", "PII", EntityType.ENTITY, $section)
.forEach(entity -> entity.redact("PII.2.3", "Personal information found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
.forEach(entity -> entity.redact("PII.2.2", "Personal information found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
end
// Rule unit: PII.3
rule "PII.3.0: Redact telephone numbers by RegEx"
when
$section: Section(matchesRegex("[+]\\d{1,}"))
then
entityCreationService.byRegex("((([+]\\d{1,3} (\\d{7,12})\\b)|([+]\\d{1,3}(\\d{3,12})\\b|[+]\\d{1,3}([ -]\\(?\\d{1,6}\\)?){2,4})|[+]\\d{1,3} ?((\\d{2,6}\\)?)([ -]\\d{2,6}){1,4}))(-\\d{1,3})?\\b)", "PII", EntityType.ENTITY, 1, $section)
.forEach(entity -> entity.redact("PII.3.0", "Telephone number found by regex", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.3.1: Redact telephone numbers by RegEx (Non vertebrate study)"
rule "PII.3.0: Redact telephone numbers by RegEx (Non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(matchesRegex("[+]\\d{1,}"))
then
entityCreationService.byRegex("((([+]\\d{1,3} (\\d{7,12})\\b)|([+]\\d{1,3}(\\d{3,12})\\b|[+]\\d{1,3}([ -]\\(?\\d{1,6}\\)?){2,4})|[+]\\d{1,3} ?((\\d{2,6}\\)?)([ -]\\d{2,6}){1,4}))(-\\d{1,3})?\\b)", "PII", EntityType.ENTITY, 1, $section)
.forEach(entity -> entity.redact("PII.3.1", "Telephone number found by regex", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
.forEach(entity -> entity.redact("PII.3.0", "Telephone number found by regex", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
end
rule "PII.3.2: Redact telephone numbers by RegEx (vertebrate study)"
rule "PII.3.1: Redact telephone numbers by RegEx (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(matchesRegex("[+]\\d{1,}"))
then
entityCreationService.byRegex("((([+]\\d{1,3} (\\d{7,12})\\b)|([+]\\d{1,3}(\\d{3,12})\\b|[+]\\d{1,3}([ -]\\(?\\d{1,6}\\)?){2,4})|[+]\\d{1,3} ?((\\d{2,6}\\)?)([ -]\\d{2,6}){1,4}))(-\\d{1,3})?\\b)", "PII", EntityType.ENTITY, 1, $section)
.forEach(entity -> entity.redact("PII.3.2", "Telephone number found by regex", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
.forEach(entity -> entity.redact("PII.3.1", "Telephone number found by regex", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
end
// Rule unit: PII.4
rule "PII.4.0: Redact line after contact information keywords"
rule "PII.4.0: Redact line after contact information keywords (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$contactKeyword: String() from List.of("Contact point:",
"Contact:",
"Alternative contact:",
@@ -933,9 +839,9 @@ rule "PII.4.0: Redact line after contact information keywords"
.forEach(contactEntity -> contactEntity.redact("PII.4.0", "Found after \"" + $contactKeyword + "\" contact keyword", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.4.1: Redact line after contact information keywords (non vertebrate study)"
rule "PII.4.1: Redact line after contact information keywords (vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$contactKeyword: String() from List.of("Contact point:",
"Contact:",
"Alternative contact:",
@@ -961,49 +867,9 @@ rule "PII.4.1: Redact line after contact information keywords (non vertebrate st
.forEach(contactEntity -> contactEntity.redact("PII.4.1", "Found after \"" + $contactKeyword + "\" contact keyword", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.4.2: Redact line after contact information keywords (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$contactKeyword: String() from List.of("Contact point:",
"Contact:",
"Alternative contact:",
"European contact:",
"No:",
"Contact:",
"Tel.:",
"Tel:",
"Telephone number:",
"Telephone No:",
"Telephone:",
"Phone No.",
"Phone:",
"Fax number:",
"Fax:",
"E-mail:",
"Email:",
"e-mail:",
"E-mail address:")
$section: Section(containsString($contactKeyword))
then
entityCreationService.lineAfterString($contactKeyword, "PII", EntityType.ENTITY, $section)
.forEach(contactEntity -> contactEntity.redact("PII.4.2", "Found after \"" + $contactKeyword + "\" contact keyword", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
// Rule unit: PII.5
rule "PII.5.0: Redact line after contact information keywords reduced"
when
$contactKeyword: String() from List.of("Contact point:",
"Contact:",
"Alternative contact:",
"European contact:")
$section: Section(containsString($contactKeyword))
then
entityCreationService.lineAfterString($contactKeyword, "PII", EntityType.ENTITY, $section)
.forEach(contactEntity -> contactEntity.redact("PII.5.0", "Found after \"" + $contactKeyword + "\" contact keyword", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.5.1: Redact line after contact information keywords reduced (non vertebrate study)"
rule "PII.5.0: Redact line after contact information keywords reduced (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$contactKeyword: String() from List.of("Contact point:",
@@ -1013,10 +879,10 @@ rule "PII.5.1: Redact line after contact information keywords reduced (non verte
$section: Section(containsString($contactKeyword))
then
entityCreationService.lineAfterString($contactKeyword, "PII", EntityType.ENTITY, $section)
.forEach(contactEntity -> contactEntity.redact("PII.5.1", "Found after \"" + $contactKeyword + "\" contact keyword", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
.forEach(contactEntity -> contactEntity.redact("PII.5.0", "Found after \"" + $contactKeyword + "\" contact keyword", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
end
rule "PII.5.2: Redact line after contact information keywords reduced (Vertebrate study)"
rule "PII.5.1: Redact line after contact information keywords reduced (Vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$contactKeyword: String() from List.of("Contact point:",
@@ -1026,23 +892,12 @@ rule "PII.5.2: Redact line after contact information keywords reduced (Vertebrat
$section: Section(containsString($contactKeyword))
then
entityCreationService.lineAfterString($contactKeyword, "PII", EntityType.ENTITY, $section)
.forEach(contactEntity -> contactEntity.redact("PII.5.2", "Found after \"" + $contactKeyword + "\" contact keyword", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
.forEach(contactEntity -> contactEntity.redact("PII.5.1", "Found after \"" + $contactKeyword + "\" contact keyword", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
end
// Rule unit: PII.6
rule "PII.6.0: Redact line between contact keywords"
when
$section: Section((containsString("No:") && containsString("Fax")) || (containsString("Contact:") && containsString("Tel")))
then
Stream.concat(
entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
)
.forEach(contactEntity -> contactEntity.redact("PII.6.0", "Found between contact keywords", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.6.1: Redact line between contact keywords (non vertebrate study)"
rule "PII.6.0: Redact line between contact keywords (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section((containsString("No:") && containsString("Fax")) || (containsString("Contact:") && containsString("Tel")))
@@ -1051,10 +906,10 @@ rule "PII.6.1: Redact line between contact keywords (non vertebrate study)"
entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
)
.forEach(contactEntity -> contactEntity.redact("PII.6.1", "Found between contact keywords", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
.forEach(contactEntity -> contactEntity.redact("PII.6.0", "Found between contact keywords", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
end
rule "PII.6.2: Redact line between contact keywords (vertebrate study)"
rule "PII.6.1: Redact line between contact keywords (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section((containsString("No:") && containsString("Fax")) || (containsString("Contact:") && containsString("Tel")))
@@ -1063,28 +918,12 @@ rule "PII.6.2: Redact line between contact keywords (vertebrate study)"
entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
)
.forEach(contactEntity -> contactEntity.redact("PII.6.2", "Found between contact keywords", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
.forEach(contactEntity -> contactEntity.redact("PII.6.1", "Found between contact keywords", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
end
// Rule unit: PII.7
rule "PII.7.0: Redact contact information if applicant is found"
when
$section: Section(getHeadline().containsString("applicant") ||
getHeadline().containsString("Primary contact") ||
getHeadline().containsString("Alternative contact") ||
containsString("Applicant") ||
containsString("Telephone number:"))
then
Stream.concat(entityCreationService.lineAfterStrings(List.of("Contact point:", "Contact:", "Alternative contact:", "European contact:", "No:", "Contact:", "Tel.:", "Tel:", "Telephone number:",
"Telephone No:", "Telephone:", "Phone No.", "Phone:", "Fax number:", "Fax:", "E-mail:", "Email:", "e-mail:", "E-mail address:"), "PII", EntityType.ENTITY, $section),
Stream.concat(
entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
))
.forEach(entity -> entity.redact("PII.7.0", "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.7.1: Redact contact information if applicant is found (non vertebrate study)"
rule "PII.7.0: Redact contact information if applicant is found (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(getHeadline().containsString("applicant") ||
@@ -1099,10 +938,10 @@ rule "PII.7.1: Redact contact information if applicant is found (non vertebrate
entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
))
.forEach(entity -> entity.redact("PII.7.1", "Applicant information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
.forEach(entity -> entity.redact("PII.7.0", "Applicant information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
end
rule "PII.7.2: Redact contact information if applicant is found (vertebrate study)"
rule "PII.7.1: Redact contact information if applicant is found (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(getHeadline().containsString("applicant") ||
@@ -1117,13 +956,14 @@ rule "PII.7.2: Redact contact information if applicant is found (vertebrate stud
entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
))
.forEach(entity -> entity.redact("PII.7.2", "Applicant information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
.forEach(entity -> entity.redact("PII.7.1", "Applicant information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
end
// Rule unit: PII.8
rule "PII.8.0: Redact contact information if producer is found"
rule "PII.8.0: Redact contact information if producer is found (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(containsStringIgnoreCase("producer of the plant protection") ||
containsStringIgnoreCase("producer of the active substance") ||
containsStringIgnoreCase("manufacturer of the active substance") ||
@@ -1139,25 +979,7 @@ rule "PII.8.0: Redact contact information if producer is found"
.forEach(entity -> entity.redact("PII.8.0", "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.8.1: Redact contact information if producer is found (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(containsStringIgnoreCase("producer of the plant protection") ||
containsStringIgnoreCase("producer of the active substance") ||
containsStringIgnoreCase("manufacturer of the active substance") ||
containsStringIgnoreCase("manufacturer:") ||
containsStringIgnoreCase("Producer or producers of the active substance"))
then
Stream.concat(entityCreationService.lineAfterStrings(List.of("Contact point:", "Contact:", "Alternative contact:", "European contact:", "No:", "Contact:", "Tel.:", "Tel:", "Telephone number:",
"Telephone No:", "Telephone:", "Phone No.", "Phone:", "Fax number:", "Fax:", "E-mail:", "Email:", "e-mail:", "E-mail address:"), "PII", EntityType.ENTITY, $section),
Stream.concat(
entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
))
.forEach(entity -> entity.redact("PII.8.1", "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.8.2: Redact contact information if producer is found (vertebrate study)"
rule "PII.8.1: Redact contact information if producer is found (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(containsStringIgnoreCase("producer of the plant protection") ||
@@ -1172,35 +994,27 @@ rule "PII.8.2: Redact contact information if producer is found (vertebrate study
entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
))
.forEach(entity -> entity.redact("PII.8.2", "Producer was found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
.forEach(entity -> entity.redact("PII.8.1", "Producer was found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
end
// Rule unit: PII.9
rule "PII.9.0: Redact between \"AUTHOR(S)\" and \"(STUDY) COMPLETION DATE\""
when
$document: Document(containsStringIgnoreCase("AUTHOR(S)"), containsAnyStringIgnoreCase("COMPLETION DATE", "STUDY COMPLETION DATE"))
then
entityCreationService.shortestBetweenAnyStringIgnoreCase(List.of("AUTHOR(S)", "AUTHOR(S):"), List.of("COMPLETION DATE", "COMPLETION DATE:", "STUDY COMPLETION DATE", "STUDY COMPLETION DATE:"), "PII", EntityType.ENTITY, $document)
.forEach(authorEntity -> authorEntity.redact("PII.9.0", "AUTHOR(S) was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.9.1: Redact between \"AUTHOR(S)\" and \"(STUDY) COMPLETION DATE\" (non vertebrate study)"
rule "PII.9.0: Redact between \"AUTHOR(S)\" and \"(STUDY) COMPLETION DATE\" (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$document: Document(containsStringIgnoreCase("AUTHOR(S)"), containsAnyStringIgnoreCase("COMPLETION DATE", "STUDY COMPLETION DATE"))
then
entityCreationService.shortestBetweenAnyStringIgnoreCase(List.of("AUTHOR(S)", "AUTHOR(S):"), List.of("COMPLETION DATE", "COMPLETION DATE:", "STUDY COMPLETION DATE", "STUDY COMPLETION DATE:"), "PII", EntityType.ENTITY, $document)
.forEach(authorEntity -> authorEntity.redact("PII.9.1", "AUTHOR(S) was found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
.forEach(authorEntity -> authorEntity.redact("PII.9.0", "AUTHOR(S) was found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
end
rule "PII.9.2: Redact between \"AUTHOR(S)\" and \"(STUDY) COMPLETION DATE\" (vertebrate study)"
rule "PII.9.1: Redact between \"AUTHOR(S)\" and \"(STUDY) COMPLETION DATE\" (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$document: Document(containsStringIgnoreCase("AUTHOR(S)"), containsAnyStringIgnoreCase("COMPLETION DATE", "STUDY COMPLETION DATE"))
then
entityCreationService.shortestBetweenAnyStringIgnoreCase(List.of("AUTHOR(S)", "AUTHOR(S):"), List.of("COMPLETION DATE", "COMPLETION DATE:", "STUDY COMPLETION DATE", "STUDY COMPLETION DATE:"), "PII", EntityType.ENTITY, $document)
.forEach(authorEntity -> authorEntity.redact("PII.9.2", "AUTHOR(S) was found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
.forEach(authorEntity -> authorEntity.redact("PII.9.1", "AUTHOR(S) was found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
end
@@ -1277,52 +1091,38 @@ rule "ETC.1.0: Redact Purity"
// Rule unit: ETC.2
rule "ETC.2.0: Redact signatures"
when
$signature: Image(imageType == ImageType.SIGNATURE)
then
$signature.redact("ETC.2.0", "Signature Found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
end
rule "ETC.2.1: Redact signatures (non vertebrate study)"
rule "ETC.2.0: Redact signatures (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$signature: Image(imageType == ImageType.SIGNATURE)
then
$signature.redact("ETC.2.1", "Signature Found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
$signature.redact("ETC.2.0", "Signature Found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
end
rule "ETC.2.2: Redact signatures (vertebrate study)"
rule "ETC.2.1: Redact signatures (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$signature: Image(imageType == ImageType.SIGNATURE)
then
$signature.redact("ETC.2.2", "Signature Found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
$signature.redact("ETC.2.1", "Signature Found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
end
// Rule unit: ETC.3
rule "ETC.3.0: Redact logos"
when
$logo: Image(imageType == ImageType.LOGO)
then
$logo.redact("ETC.3.0", "Logo Found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
end
rule "ETC.3.1: Skip logos (non vertebrate study)"
rule "ETC.3.0: Skip logos (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$logo: Image(imageType == ImageType.LOGO)
then
$logo.skip("ETC.3.1", "Logo Found");
$logo.skip("ETC.3.0", "Logo Found");
end
rule "ETC.3.2: Redact logos (vertebrate study)"
rule "ETC.3.1: Redact logos (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$logo: Image(imageType == ImageType.LOGO)
then
$logo.redact("ETC.3.2", "Logo Found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
$logo.redact("ETC.3.1", "Logo Found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
end
@@ -1360,7 +1160,6 @@ rule "ETC.5.0: Skip dossier_redaction entries if confidentiality is 'confidentia
end
rule "ETC.5.1: Remove dossier_redaction entries if confidentiality is not 'confidential'"
salience 256
when
not FileAttribute(label == "Confidentiality", value == "confidential")
$dossierRedaction: TextEntity(type() == "dossier_redaction")
@@ -1788,6 +1587,27 @@ rule "X.8.1: Remove Entity when intersected by imported Entity"
end
// Rule unit: X.9
rule "X.9.0: Merge mostly contained signatures"
when
$aiSignature: Image(imageType == ImageType.SIGNATURE, engines contains LayoutEngine.AI)
$signature: Image(imageType == ImageType.SIGNATURE, engines contains LayoutEngine.ALGORITHM, mostlyContains($aiSignature, 0.8))
then
$aiSignature.remove("X.9.0", "removed because already contained by alogrithm signature");
$signature.addEngine(LayoutEngine.AI);
end
// Rule unit: X.10
rule "X.10.0: remove false positives of ai"
when
$anyImage: Image(engines contains LayoutEngine.ALGORITHM)
$aiSignature: Image(imageType == ImageType.SIGNATURE, engines contains LayoutEngine.AI, !mostlyContainedBy($anyImage, 0.8))
then
$aiSignature.remove("X.10.0", "Removed because false positive");
end
//------------------------------------ File attributes rules ------------------------------------
// Rule unit: FA.1
@@ -54,6 +54,8 @@ import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.ManualRecategorization;
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.ManualLegalBasisChange;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.LayoutEngine;
global Document document
global EntityCreationService entityCreationService
global ManualChangesApplicationService manualChangesApplicationService
@@ -1414,6 +1416,27 @@ rule "X.8.1: Remove Entity when intersected by imported Entity"
end
// Rule unit: X.9
rule "X.9.0: Merge mostly contained signatures"
when
$aiSignature: Image(imageType == ImageType.SIGNATURE, engines contains LayoutEngine.AI)
$signature: Image(imageType == ImageType.SIGNATURE, engines contains LayoutEngine.ALGORITHM, mostlyContains($aiSignature, 0.8))
then
$aiSignature.remove("X.9.0", "removed because already contained by alogrithm signature");
$signature.addEngine(LayoutEngine.AI);
end
// Rule unit: X.10
rule "X.10.0: remove false positives of ai"
when
$anyImage: Image(engines contains LayoutEngine.ALGORITHM)
$aiSignature: Image(imageType == ImageType.SIGNATURE, engines contains LayoutEngine.AI, !mostlyContainedBy($anyImage, 0.8))
then
$aiSignature.remove("X.10.0", "Removed because false positive");
end
//------------------------------------ File attributes rules ------------------------------------
// Rule unit: FA.1
@@ -54,6 +54,8 @@ import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.ManualRecategorization;
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.ManualLegalBasisChange;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.LayoutEngine;
global Document document
global EntityCreationService entityCreationService
global ManualChangesApplicationService manualChangesApplicationService
@@ -255,6 +257,27 @@ rule "X.8.1: Remove Entity when intersected by imported Entity"
end
// Rule unit: X.9
rule "X.9.0: Merge mostly contained signatures"
when
$aiSignature: Image(imageType == ImageType.SIGNATURE, engines contains LayoutEngine.AI)
$signature: Image(imageType == ImageType.SIGNATURE, engines contains LayoutEngine.ALGORITHM, mostlyContains($aiSignature, 0.8))
then
$aiSignature.remove("X.9.0", "removed because already contained by alogrithm signature");
$signature.addEngine(LayoutEngine.AI);
end
// Rule unit: X.10
rule "X.10.0: remove false positives of ai"
when
$anyImage: Image(engines contains LayoutEngine.ALGORITHM)
$aiSignature: Image(imageType == ImageType.SIGNATURE, engines contains LayoutEngine.AI, !mostlyContainedBy($anyImage, 0.8))
then
$aiSignature.remove("X.10.0", "Removed because false positive");
end
//------------------------------------ Local dictionary search rules ------------------------------------
// Rule unit: LDS.0
@@ -54,6 +54,8 @@ import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.ManualRecategorization;
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.ManualLegalBasisChange;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.LayoutEngine;
global Document document
global EntityCreationService entityCreationService
global ManualChangesApplicationService manualChangesApplicationService
@@ -100,18 +102,17 @@ rule "CBI.3.0: Redacted because Section contains a vertebrate"
rule "CBI.3.1: Redacted because table row contains a vertebrate"
when
$table: Table(hasEntitiesOfType("vertebrate"), (hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address")))
$table: Table(hasEntitiesOfType("vertebrate"), hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address"))
$cellsWithvertebrate: TableCell() from $table.streamTableCellsWhichContainType("vertebrate").toList()
$tableCell: TableCell(row == $cellsWithvertebrate.row) from $table.streamTableCells().toList()
$authorOrAddress: TextEntity(type() == "CBI_author" || type() == "CBI_address", active()) from $tableCell.getEntities()
then
$table.streamEntitiesWhereRowContainsEntitiesOfType(List.of("vertebrate"))
.filter(entity -> entity.getType().equals("CBI_author") || entity.getType().equals("CBI_address"))
.forEach(entity -> {
entity.applyWithReferences(
$authorOrAddress.applyWithReferences(
"CBI.3.1",
"Vertebrate found",
"Reg (EC) No 1107/2009 Art. 63 (2g)",
$table.getEntitiesOfTypeInSameRow("vertebrate", entity)
$table.getEntitiesOfTypeInSameRow("vertebrate", $authorOrAddress)
);
});
end
rule "CBI.3.2: Do not redact because Section does not contain a vertebrate"
@@ -150,23 +151,21 @@ rule "CBI.4.0: Do not redact Names and Addresses if no_redaction_indicator is fo
});
end
rule "CBI.4.1: Don't redact authors or addresses which appear in the same row as a vertebrate and a no_redaction_indicator"
rule "CBI.4.1: Redacted because table row contains a vertebrate"
when
$table: Table(hasEntitiesOfType("no_redaction_indicator"),
hasEntitiesOfType("vertebrate"),
(hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address")))
$table: Table(hasEntitiesOfType("no_redaction_indicator"), hasEntitiesOfType("vertebrate"), hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address"))
TableCell($row: row) from $table.streamTableCellsWhichContainType("vertebrate").toList()
TableCell(row == $row) from $table.streamTableCellsWhichContainType("no_redaction_indicator").toList()
$tableCell: TableCell(row == $row) from $table.streamTableCells().toList()
$authorOrAddress: TextEntity(type() == "CBI_author" || type() == "CBI_address", active()) from $tableCell.getEntities()
then
$table.streamEntitiesWhereRowContainsEntitiesOfType(List.of("vertebrate", "no-redaction_indicator"))
.filter(entity -> entity.getType().equals("CBI_author") || entity.getType().equals("CBI_address"))
.forEach(entity -> {
entity.skipWithReferences(
$authorOrAddress.skipWithReferences(
"CBI.4.1",
"Vertebrate but a no redaction indicator found",
Stream.concat(
$table.getEntitiesOfTypeInSameRow("vertebrate", entity).stream(),
$table.getEntitiesOfTypeInSameRow("no_redaction_indicator", entity).stream()).toList()
$table.getEntitiesOfTypeInSameRow("vertebrate", $authorOrAddress).stream(),
$table.getEntitiesOfTypeInSameRow("no_redaction_indicator", $authorOrAddress).stream()).toList()
);
});
end
@@ -193,22 +192,20 @@ rule "CBI.5.0: Redact Names and Addresses if no_redaction_indicator but also red
rule "CBI.5.1: Redact Names and Addresses if no_redaction_indicator but also redaction_indicator is found in table row"
when
$table: Table(hasEntitiesOfType("no_redaction_indicator"),
hasEntitiesOfType("redaction_indicator"),
(hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address")))
$table: Table(hasEntitiesOfType("no_redaction_indicator"), hasEntitiesOfType("redaction_indicator"), hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address"))
TableCell($row: row) from $table.streamTableCellsWhichContainType("redaction_indicator").toList()
TableCell(row == $row) from $table.streamTableCellsWhichContainType("no_redaction_indicator").toList()
$tableCell: TableCell(row == $row) from $table.streamTableCells().toList()
$entity: TextEntity(type() == "CBI_author" || type() == "CBI_address", active()) from $tableCell.getEntities()
then
$table.streamEntitiesWhereRowContainsEntitiesOfType(List.of("redaction_indicator", "no_redaction_indicator"))
.filter(entity -> entity.getType().equals("CBI_author") || entity.getType().equals("CBI_address"))
.forEach(entity -> {
entity.applyWithReferences(
$entity.applyWithReferences(
"CBI.5.1",
"no_redaction_indicator but also redaction_indicator found",
"Reg (EC) No 1107/2009 Art. 63 (2g)",
Stream.concat(
$table.getEntitiesOfTypeInSameRow("redaction_indicator", entity).stream(),
$table.getEntitiesOfTypeInSameRow("no_redaction_indicator", entity).stream()).toList()
$table.getEntitiesOfTypeInSameRow("redaction_indicator", $entity).stream(),
$table.getEntitiesOfTypeInSameRow("no_redaction_indicator", $entity).stream()).toList()
);
});
end
@@ -230,18 +227,17 @@ rule "CBI.8.0: Redacted because Section contains must_redact entity"
rule "CBI.8.1: Redacted because table row contains must_redact entity"
when
$table: Table(hasEntitiesOfType("must_redact"), (hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address")))
$table: Table(hasEntitiesOfType("must_redact"), hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address"))
$cellsWithMustRedact: TableCell() from $table.streamTableCellsWhichContainType("must_redact").toList()
$tableCell: TableCell(row == $cellsWithMustRedact.row) from $table.streamTableCells().toList()
$authorOrAddress: TextEntity(type() == "CBI_author" || type() == "CBI_address", active()) from $tableCell.getEntities()
then
$table.streamEntitiesWhereRowContainsEntitiesOfType(List.of("must_redact"))
.filter(entity -> entity.getType().equals("CBI_author") || entity.getType().equals("CBI_address"))
.forEach(entity -> {
entity.applyWithReferences(
"CBI.8.1",
"Must_redact found",
"Reg (EC) No 1107/2009 Art. 63 (2g)",
$table.getEntitiesOfTypeInSameRow("must_redact", entity)
);
});
$authorOrAddress.applyWithReferences(
"CBI.8.1",
"Must_redact found",
"Reg (EC) No 1107/2009 Art. 63 (2g)",
$table.getEntitiesOfTypeInSameRow("must_redact", $authorOrAddress)
);
end
@@ -285,22 +281,7 @@ rule "CBI.11.0: Recommend all CBI_author entities in Table with Vertebrate Study
// Rule unit: CBI.12
rule "CBI.12.0: Redact and recommend TableCell with header 'Author' or 'Author(s)' and header 'Vertebrate study Y/N' with value 'Yes'"
agenda-group "LOCAL_DICTIONARY_ADDS"
when
$table: Table(hasHeader("Author(s)") || hasHeader("Author"), hasHeaderIgnoreCase("Vertebrate Study Y/N"))
TableCell(header, containsAnyStringIgnoreCase("Author", "Author(s)"), $authorCol: col) from $table.streamHeaders().toList()
TableCell(header, containsStringIgnoreCase("Vertebrate study Y/N"), $vertebrateCol: col) from $table.streamHeaders().toList()
$rowCell: TableCell(!header, containsAnyString("Yes", "Y"), $rowWithYes: row) from $table.streamCol($vertebrateCol).toList()
TableCell(row == $rowWithYes) from $table.streamCol($authorCol).toList()
then
entityCreationService.bySemanticNode($rowCell, "must_redact", EntityType.HINT)
.ifPresent(yesEntity -> {
yesEntity.skip("CBI.12.0", "must_redact");
});
end
rule "CBI.12.1: Redact and recommend TableCell with header 'Author' or 'Author(s)' and header 'Vertebrate study Y/N' with value 'Yes' (non vertebrate study)"
rule "CBI.12.0: Redact and recommend TableCell with header 'Author' or 'Author(s)' and header 'Vertebrate study Y/N' with value 'Yes' (non vertebrate study)"
agenda-group "LOCAL_DICTIONARY_ADDS"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
@@ -312,13 +293,13 @@ rule "CBI.12.1: Redact and recommend TableCell with header 'Author' or 'Author(s
then
entityCreationService.bySemanticNode($authorCell, "CBI_author", EntityType.ENTITY)
.ifPresent(authorEntity -> {
authorEntity.redact("CBI.12.1", "Redacted because it's row belongs to a vertebrate study", "Article 39(e)(3) of Regulation (EC) No 178/2002");
authorEntity.redact("CBI.12.0", "Redacted because it's row belongs to a vertebrate study", "Article 39(e)(3) of Regulation (EC) No 178/2002");
dictionary.addMultipleAuthorsAsRecommendation(authorEntity);
});
end
rule "CBI.12.2: Redact and recommend TableCell with header 'Author' or 'Author(s)' and header 'Vertebrate study Y/N' with value 'Yes' (vertebrate study)"
rule "CBI.12.1: Redact and recommend TableCell with header 'Author' or 'Author(s)' and header 'Vertebrate study Y/N' with value 'Yes' (vertebrate study)"
agenda-group "LOCAL_DICTIONARY_ADDS"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
@@ -331,13 +312,13 @@ rule "CBI.12.2: Redact and recommend TableCell with header 'Author' or 'Author(s
entityCreationService.bySemanticNode($authorCell, "CBI_author", EntityType.ENTITY)
.ifPresent(authorEntity -> {
authorEntity.redact("CBI.12.2", "Redacted because it's row belongs to a vertebrate study", "Article 39(e)(2) of Regulation (EC) No 178/2002");
authorEntity.redact("CBI.12.1", "Redacted because it's row belongs to a vertebrate study", "Article 39(e)(2) of Regulation (EC) No 178/2002");
dictionary.addMultipleAuthorsAsRecommendation(authorEntity);
});
end
rule "CBI.12.3: Skip TableCell with header 'Author' or 'Author(s)' and header 'Vertebrate study Y/N' with value 'No'"
rule "CBI.12.2: Skip TableCell with header 'Author' or 'Author(s)' and header 'Vertebrate study Y/N' with value 'No'"
when
$table: Table(hasHeader("Author(s)") || hasHeader("Author"), hasHeaderIgnoreCase("Vertebrate Study Y/N"))
TableCell(header, containsAnyStringIgnoreCase("Author", "Author(s)"), $authorCol: col) from $table.streamHeaders().toList()
@@ -346,19 +327,16 @@ rule "CBI.12.3: Skip TableCell with header 'Author' or 'Author(s)' and header 'V
$authorCell: TableCell(row == $rowWithNo) from $table.streamCol($authorCol).toList()
then
entityCreationService.bySemanticNode($authorCell, "CBI_author", EntityType.ENTITY)
.ifPresent(authorEntity -> authorEntity.skip("CBI.12.3", "Not redacted because it's row does not belong to a vertebrate study"));
.ifPresent(authorEntity -> authorEntity.skip("CBI.12.2", "Not redacted because it's row does not belong to a vertebrate study"));
end
// Rule unit: CBI.14
rule "CBI.14.0: Redact CBI_sponsor entities if preceded by \"batches produced at\""
when
$section: Section(containsStringIgnoreCase("batches produced at"))
$sponsorEntity: TextEntity(type() == "CBI_sponsor", textBefore.contains("batches produced at"))
then
$sponsorEntity.redact("CBI.14.0", "Redacted because it represents a sponsor company", "Reg (EC) No 1107/2009 Art. 63 (2g)");
entityCreationService.byString("batches produced at", "must_redact", EntityType.HINT, $section)
.forEach(entity -> entity.skip("CBI.14.0", "must_redact"));
end
@@ -379,10 +357,10 @@ rule "CBI.15.0: Redact row if row contains \"determination of residues\" and liv
containsStringIgnoreCase($residueKeyword),
containsStringIgnoreCase($keyword))
then
entityCreationService.byString($keyword, "must_redact", EntityType.HINT, $section)
.forEach(entity -> entity.skip("CBI.15.0", "must_redact"));
entityCreationService.byString($keyword, "must_redact", EntityType.ENTITY, $section)
.toList();
$section.getEntitiesOfType(List.of("CBI_author", "CBI_address"))
$section.getEntitiesOfType(List.of($keyword, $residueKeyword))
.forEach(redactionEntity -> redactionEntity.redact("CBI.15.0", "Determination of residues and keyword \"" + $keyword + "\" was found.", "Reg (EC) No 1107/2009 Art. 63 (2g)"));
end
@@ -400,8 +378,8 @@ rule "CBI.15.1: Redact CBI_author and CBI_address if row contains \"determinatio
$residueKeyword: String() from List.of("determination of residues", "determination of total residues")
$table: Table(containsStringIgnoreCase($residueKeyword), containsStringIgnoreCase($keyword))
then
entityCreationService.byString($keyword, "must_redact", EntityType.HINT, $table)
.forEach(entity -> entity.skip("CBI.15.1", "must_redact"));
entityCreationService.byString($keyword, "must_redact", EntityType.ENTITY, $table)
.toList();
$table.streamEntitiesWhereRowContainsStringsIgnoreCase(List.of($keyword, $residueKeyword))
.filter(redactionEntity -> redactionEntity.isAnyType(List.of("CBI_author", "CBI_address")))
@@ -410,19 +388,7 @@ rule "CBI.15.1: Redact CBI_author and CBI_address if row contains \"determinatio
// Rule unit: CBI.16
rule "CBI.16.0: Add CBI_author with \"et al.\" RegEx"
agenda-group "LOCAL_DICTIONARY_ADDS"
when
$section: Section(containsString("et al."))
then
entityCreationService.byRegex("\\b([A-ZÄÖÜ][^\\s\\.,]+( [A-ZÄÖÜ]{1,2}\\.?)?( ?[A-ZÄÖÜ]\\.?)?) et al\\.?", "CBI_author", EntityType.ENTITY, 1, $section)
.forEach(entity -> {
entity.redact("CBI.16.0", "Author found by \"et al\" regex", "Reg (EC) No 1107/2009 Art. 63 (2g)");
dictionary.recommendEverywhere(entity);
});
end
rule "CBI.16.1: Add CBI_author with \"et al.\" RegEx (non vertebrate study)"
rule "CBI.16.0: Add CBI_author with \"et al.\" RegEx (non vertebrate study)"
agenda-group "LOCAL_DICTIONARY_ADDS"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
@@ -430,12 +396,12 @@ rule "CBI.16.1: Add CBI_author with \"et al.\" RegEx (non vertebrate study)"
then
entityCreationService.byRegex("\\b([A-ZÄÖÜ][^\\s\\.,]+( [A-ZÄÖÜ]{1,2}\\.?)?( ?[A-ZÄÖÜ]\\.?)?) et al\\.?", "CBI_author", EntityType.ENTITY, 1, $section)
.forEach(entity -> {
entity.redact("CBI.16.1", "Author found by \"et al\" regex", "Article 39(e)(3) of Regulation (EC) No 178/2002");
entity.redact("CBI.16.0", "Author found by \"et al\" regex", "Article 39(e)(3) of Regulation (EC) No 178/2002");
dictionary.recommendEverywhere(entity);
});
end
rule "CBI.16.2: Add CBI_author with \"et al.\" RegEx (vertebrate study)"
rule "CBI.16.1: Add CBI_author with \"et al.\" RegEx (vertebrate study)"
agenda-group "LOCAL_DICTIONARY_ADDS"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
@@ -443,7 +409,7 @@ rule "CBI.16.2: Add CBI_author with \"et al.\" RegEx (vertebrate study)"
then
entityCreationService.byRegex("\\b([A-ZÄÖÜ][^\\s\\.,]+( [A-ZÄÖÜ]{1,2}\\.?)?( ?[A-ZÄÖÜ]\\.?)?) et al\\.?", "CBI_author", EntityType.ENTITY, 1, $section)
.forEach(entity -> {
entity.redact("CBI.16.2", "Author found by \"et al\" regex", "Article 39(e)(2) of Regulation (EC) No 178/2002");
entity.redact("CBI.16.1", "Author found by \"et al\" regex", "Article 39(e)(2) of Regulation (EC) No 178/2002");
dictionary.recommendEverywhere(entity);
});
end
@@ -501,19 +467,7 @@ rule "CBI.19.0: Expand CBI_author entities with salutation prefix"
// Rule unit: CBI.20
rule "CBI.20.0: Redact between \"PERFORMING LABORATORY\" and \"LABORATORY PROJECT ID:\")"
agenda-group "LOCAL_DICTIONARY_ADDS"
when
$section: Section(!hasTables(), containsString("PERFORMING LABORATORY:"), containsString("LABORATORY PROJECT ID:"))
then
entityCreationService.betweenStrings("PERFORMING LABORATORY:", "LABORATORY PROJECT ID:", "CBI_address", EntityType.ENTITY, $section)
.forEach(laboratoryEntity -> {
laboratoryEntity.redact("CBI.20.0", "PERFORMING LABORATORY was found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
dictionary.recommendEverywhere(laboratoryEntity);
});
end
rule "CBI.20.1: Redact between \"PERFORMING LABORATORY\" and \"LABORATORY PROJECT ID:\" (non vertebrate study)"
rule "CBI.20.0: Redact between \"PERFORMING LABORATORY\" and \"LABORATORY PROJECT ID:\" (non vertebrate study)"
agenda-group "LOCAL_DICTIONARY_ADDS"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
@@ -521,12 +475,12 @@ rule "CBI.20.1: Redact between \"PERFORMING LABORATORY\" and \"LABORATORY PROJEC
then
entityCreationService.betweenStrings("PERFORMING LABORATORY:", "LABORATORY PROJECT ID:", "CBI_address", EntityType.ENTITY, $section)
.forEach(laboratoryEntity -> {
laboratoryEntity.skip("CBI.20.1", "PERFORMING LABORATORY was found for non vertebrate study");
laboratoryEntity.skip("CBI.20.0", "PERFORMING LABORATORY was found for non vertebrate study");
dictionary.recommendEverywhere(laboratoryEntity);
});
end
rule "CBI.20.2: Redact between \"PERFORMING LABORATORY\" and \"LABORATORY PROJECT ID:\" (vertebrate study)"
rule "CBI.20.1: Redact between \"PERFORMING LABORATORY\" and \"LABORATORY PROJECT ID:\" (vertebrate study)"
agenda-group "LOCAL_DICTIONARY_ADDS"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
@@ -534,7 +488,7 @@ rule "CBI.20.2: Redact between \"PERFORMING LABORATORY\" and \"LABORATORY PROJEC
then
entityCreationService.betweenStrings("PERFORMING LABORATORY:", "LABORATORY PROJECT ID:", "CBI_address", EntityType.ENTITY, $section)
.forEach(laboratoryEntity -> {
laboratoryEntity.redact("CBI.20.2", "PERFORMING LABORATORY was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
laboratoryEntity.redact("CBI.20.1", "PERFORMING LABORATORY was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
dictionary.recommendEverywhere(laboratoryEntity);
});
end
@@ -543,62 +497,47 @@ rule "CBI.20.2: Redact between \"PERFORMING LABORATORY\" and \"LABORATORY PROJEC
//------------------------------------ PII rules ------------------------------------
// Rule unit: PII.0
rule "PII.0.0: Redact all PII"
when
$pii: TextEntity(type() == "PII", dictionaryEntry)
then
$pii.redact("PII.0.0", "Personal Information found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
end
rule "PII.0.1: Redact all PII (non vertebrate study)"
rule "PII.0.0: Redact all PII (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$pii: TextEntity(type() == "PII", dictionaryEntry)
then
$pii.redact("PII.0.1", "Personal Information found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
$pii.redact("PII.0.0", "Personal Information found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
end
rule "PII.0.2: Redact all PII (vertebrate study)"
rule "PII.0.1: Redact all PII (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$pii: TextEntity(type() == "PII", dictionaryEntry)
then
$pii.redact("PII.0.2", "Personal Information found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
$pii.redact("PII.0.1", "Personal Information found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
end
// Rule unit: PII.1
rule "PII.1.0: Redact Emails by RegEx"
when
$section: Section(containsString("@"))
then
entityCreationService.byRegex("\\b([A-Za-z0-9._%+\\-]+@[A-Za-z0-9.\\-]+\\.[A-Za-z\\-]{1,23}[A-Za-z])\\b", "PII", EntityType.ENTITY, 1, $section)
.forEach(emailEntity -> emailEntity.redact("PII.1.0", "Found by Email Regex", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.1.1: Redact Emails by RegEx (Non vertebrate study)"
rule "PII.1.0: Redact Emails by RegEx (Non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(containsString("@"))
then
entityCreationService.byRegex("\\b([A-Za-z0-9._%+\\-]+@[A-Za-z0-9.\\-]+\\.[A-Za-z\\-]{1,23}[A-Za-z])\\b", "PII", EntityType.ENTITY, 1, $section)
.forEach(emailEntity -> emailEntity.redact("PII.1.1", "Found by Email Regex", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
.forEach(emailEntity -> emailEntity.redact("PII.1.0", "Found by Email Regex", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
end
rule "PII.1.2: Redact Emails by RegEx (vertebrate study)"
rule "PII.1.1: Redact Emails by RegEx (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(containsString("@"))
then
entityCreationService.byRegex("\\b([A-Za-z0-9._%+\\-]+@[A-Za-z0-9.\\-]+\\.[A-Za-z\\-]{1,23}[A-Za-z])\\b", "PII", EntityType.ENTITY, 1, $section)
.forEach(emailEntity -> emailEntity.redact("PII.1.2", "Found by Email Regex", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
.forEach(emailEntity -> emailEntity.redact("PII.1.1", "Found by Email Regex", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
end
// Rule unit: PII.4
rule "PII.4.0: Redact line after contact information keywords"
rule "PII.4.0: Redact line after contact information keywords (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$contactKeyword: String() from List.of("Contact point:",
"Contact:",
"Alternative contact:",
@@ -624,9 +563,9 @@ rule "PII.4.0: Redact line after contact information keywords"
.forEach(contactEntity -> contactEntity.redact("PII.4.0", "Found after \"" + $contactKeyword + "\" contact keyword", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.4.1: Redact line after contact information keywords (non vertebrate study)"
rule "PII.4.1: Redact line after contact information keywords (vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$contactKeyword: String() from List.of("Contact point:",
"Contact:",
"Alternative contact:",
@@ -652,48 +591,9 @@ rule "PII.4.1: Redact line after contact information keywords (non vertebrate st
.forEach(contactEntity -> contactEntity.redact("PII.4.1", "Found after \"" + $contactKeyword + "\" contact keyword", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.4.2: Redact line after contact information keywords (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$contactKeyword: String() from List.of("Contact point:",
"Contact:",
"Alternative contact:",
"European contact:",
"No:",
"Contact:",
"Tel.:",
"Tel:",
"Telephone number:",
"Telephone No:",
"Telephone:",
"Phone No.",
"Phone:",
"Fax number:",
"Fax:",
"E-mail:",
"Email:",
"e-mail:",
"E-mail address:")
$section: Section(containsString($contactKeyword))
then
entityCreationService.lineAfterString($contactKeyword, "PII", EntityType.ENTITY, $section)
.forEach(contactEntity -> contactEntity.redact("PII.4.2", "Found after \"" + $contactKeyword + "\" contact keyword", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
// Rule unit: PII.6
rule "PII.6.0: Redact line between contact keywords"
when
$section: Section((containsString("No:") && containsString("Fax")) || (containsString("Contact:") && containsString("Tel")))
then
Stream.concat(
entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
)
.forEach(contactEntity -> contactEntity.redact("PII.6.0", "Found between contact keywords", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.6.1: Redact line between contact keywords (non vertebrate study)"
rule "PII.6.0: Redact line between contact keywords (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section((containsString("No:") && containsString("Fax")) || (containsString("Contact:") && containsString("Tel")))
@@ -702,10 +602,10 @@ rule "PII.6.1: Redact line between contact keywords (non vertebrate study)"
entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
)
.forEach(contactEntity -> contactEntity.redact("PII.6.1", "Found between contact keywords", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
.forEach(contactEntity -> contactEntity.redact("PII.6.0", "Found between contact keywords", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
end
rule "PII.6.2: Redact line between contact keywords (vertebrate study)"
rule "PII.6.1: Redact line between contact keywords (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section((containsString("No:") && containsString("Fax")) || (containsString("Contact:") && containsString("Tel")))
@@ -714,28 +614,12 @@ rule "PII.6.2: Redact line between contact keywords (vertebrate study)"
entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
)
.forEach(contactEntity -> contactEntity.redact("PII.6.2", "Found between contact keywords", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
.forEach(contactEntity -> contactEntity.redact("PII.6.1", "Found between contact keywords", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
end
// Rule unit: PII.7
rule "PII.7.0: Redact contact information if applicant is found"
when
$section: Section(getHeadline().containsString("applicant") ||
getHeadline().containsString("Primary contact") ||
getHeadline().containsString("Alternative contact") ||
containsString("Applicant") ||
containsString("Telephone number:"))
then
Stream.concat(entityCreationService.lineAfterStrings(List.of("Contact point:", "Contact:", "Alternative contact:", "European contact:", "No:", "Contact:", "Tel.:", "Tel:", "Telephone number:",
"Telephone No:", "Telephone:", "Phone No.", "Phone:", "Fax number:", "Fax:", "E-mail:", "Email:", "e-mail:", "E-mail address:"), "PII", EntityType.ENTITY, $section),
Stream.concat(
entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
))
.forEach(entity -> entity.redact("PII.7.0", "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.7.1: Redact contact information if applicant is found (non vertebrate study)"
rule "PII.7.0: Redact contact information if applicant is found (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(getHeadline().containsString("applicant") ||
@@ -750,10 +634,10 @@ rule "PII.7.1: Redact contact information if applicant is found (non vertebrate
entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
))
.forEach(entity -> entity.redact("PII.7.1", "Applicant information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
.forEach(entity -> entity.redact("PII.7.0", "Applicant information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
end
rule "PII.7.2: Redact contact information if applicant is found (vertebrate study)"
rule "PII.7.1: Redact contact information if applicant is found (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(getHeadline().containsString("applicant") ||
@@ -768,13 +652,14 @@ rule "PII.7.2: Redact contact information if applicant is found (vertebrate stud
entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
))
.forEach(entity -> entity.redact("PII.7.2", "Applicant information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
.forEach(entity -> entity.redact("PII.7.1", "Applicant information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
end
// Rule unit: PII.8
rule "PII.8.0: Redact contact information if producer is found"
rule "PII.8.0: Redact contact information if producer is found (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(containsStringIgnoreCase("producer of the plant protection") ||
containsStringIgnoreCase("producer of the active substance") ||
containsStringIgnoreCase("manufacturer of the active substance") ||
@@ -790,25 +675,7 @@ rule "PII.8.0: Redact contact information if producer is found"
.forEach(entity -> entity.redact("PII.8.0", "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.8.1: Redact contact information if producer is found (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(containsStringIgnoreCase("producer of the plant protection") ||
containsStringIgnoreCase("producer of the active substance") ||
containsStringIgnoreCase("manufacturer of the active substance") ||
containsStringIgnoreCase("manufacturer:") ||
containsStringIgnoreCase("Producer or producers of the active substance"))
then
Stream.concat(entityCreationService.lineAfterStrings(List.of("Contact point:", "Contact:", "Alternative contact:", "European contact:", "No:", "Contact:", "Tel.:", "Tel:", "Telephone number:",
"Telephone No:", "Telephone:", "Phone No.", "Phone:", "Fax number:", "Fax:", "E-mail:", "Email:", "e-mail:", "E-mail address:"), "PII", EntityType.ENTITY, $section),
Stream.concat(
entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
))
.forEach(entity -> entity.redact("PII.8.1", "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.8.2: Redact contact information if producer is found (vertebrate study)"
rule "PII.8.1: Redact contact information if producer is found (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(containsStringIgnoreCase("producer of the plant protection") ||
@@ -823,35 +690,27 @@ rule "PII.8.2: Redact contact information if producer is found (vertebrate study
entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
))
.forEach(entity -> entity.redact("PII.8.2", "Producer was found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
.forEach(entity -> entity.redact("PII.8.1", "Producer was found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
end
// Rule unit: PII.9
rule "PII.9.0: Redact between \"AUTHOR(S)\" and \"(STUDY) COMPLETION DATE\""
when
$document: Document(containsStringIgnoreCase("AUTHOR(S)"), containsAnyStringIgnoreCase("COMPLETION DATE", "STUDY COMPLETION DATE"))
then
entityCreationService.shortestBetweenAnyStringIgnoreCase(List.of("AUTHOR(S)", "AUTHOR(S):"), List.of("COMPLETION DATE", "COMPLETION DATE:", "STUDY COMPLETION DATE", "STUDY COMPLETION DATE:"), "PII", EntityType.ENTITY, $document)
.forEach(authorEntity -> authorEntity.redact("PII.9.0", "AUTHOR(S) was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.9.1: Redact between \"AUTHOR(S)\" and \"(STUDY) COMPLETION DATE\" (non vertebrate study)"
rule "PII.9.0: Redact between \"AUTHOR(S)\" and \"(STUDY) COMPLETION DATE\" (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$document: Document(containsStringIgnoreCase("AUTHOR(S)"), containsAnyStringIgnoreCase("COMPLETION DATE", "STUDY COMPLETION DATE"))
then
entityCreationService.shortestBetweenAnyStringIgnoreCase(List.of("AUTHOR(S)", "AUTHOR(S):"), List.of("COMPLETION DATE", "COMPLETION DATE:", "STUDY COMPLETION DATE", "STUDY COMPLETION DATE:"), "PII", EntityType.ENTITY, $document)
.forEach(authorEntity -> authorEntity.redact("PII.9.1", "AUTHOR(S) was found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
.forEach(authorEntity -> authorEntity.redact("PII.9.0", "AUTHOR(S) was found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
end
rule "PII.9.2: Redact between \"AUTHOR(S)\" and \"(STUDY) COMPLETION DATE\" (vertebrate study)"
rule "PII.9.1: Redact between \"AUTHOR(S)\" and \"(STUDY) COMPLETION DATE\" (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$document: Document(containsStringIgnoreCase("AUTHOR(S)"), containsAnyStringIgnoreCase("COMPLETION DATE", "STUDY COMPLETION DATE"))
then
entityCreationService.shortestBetweenAnyStringIgnoreCase(List.of("AUTHOR(S)", "AUTHOR(S):"), List.of("COMPLETION DATE", "COMPLETION DATE:", "STUDY COMPLETION DATE", "STUDY COMPLETION DATE:"), "PII", EntityType.ENTITY, $document)
.forEach(authorEntity -> authorEntity.redact("PII.9.2", "AUTHOR(S) was found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
.forEach(authorEntity -> authorEntity.redact("PII.9.1", "AUTHOR(S) was found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
end
@@ -898,52 +757,38 @@ rule "ETC.1.0: Redact Purity"
// Rule unit: ETC.2
rule "ETC.2.0: Redact signatures"
when
$signature: Image(imageType == ImageType.SIGNATURE)
then
$signature.redact("ETC.2.0", "Signature Found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
end
rule "ETC.2.1: Redact signatures (non vertebrate study)"
rule "ETC.2.0: Redact signatures (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$signature: Image(imageType == ImageType.SIGNATURE)
then
$signature.redact("ETC.2.1", "Signature Found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
$signature.redact("ETC.2.0", "Signature Found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
end
rule "ETC.2.2: Redact signatures (vertebrate study)"
rule "ETC.2.1: Redact signatures (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$signature: Image(imageType == ImageType.SIGNATURE)
then
$signature.redact("ETC.2.2", "Signature Found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
$signature.redact("ETC.2.1", "Signature Found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
end
// Rule unit: ETC.3
rule "ETC.3.0: Redact logos"
when
$logo: Image(imageType == ImageType.LOGO)
then
$logo.redact("ETC.3.0", "Logo Found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
end
rule "ETC.3.1: Skip logos (non vertebrate study)"
rule "ETC.3.0: Skip logos (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$logo: Image(imageType == ImageType.LOGO)
then
$logo.skip("ETC.3.1", "Logo Found");
$logo.skip("ETC.3.0", "Logo Found");
end
rule "ETC.3.2: Redact logos (vertebrate study)"
rule "ETC.3.1: Redact logos (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$logo: Image(imageType == ImageType.LOGO)
then
$logo.redact("ETC.3.2", "Logo Found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
$logo.redact("ETC.3.1", "Logo Found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
end
@@ -967,7 +812,6 @@ rule "ETC.5.0: Skip dossier_redaction entries if confidentiality is 'confidentia
end
rule "ETC.5.1: Remove dossier_redaction entries if confidentiality is not 'confidential'"
salience 256
when
not FileAttribute(label == "Confidentiality", value == "confidential")
$dossierRedaction: TextEntity(type() == "dossier_redaction")
@@ -1333,6 +1177,27 @@ rule "X.8.1: Remove Entity when intersected by imported Entity"
end
// Rule unit: X.9
rule "X.9.0: Merge mostly contained signatures"
when
$aiSignature: Image(imageType == ImageType.SIGNATURE, engines contains LayoutEngine.AI)
$signature: Image(imageType == ImageType.SIGNATURE, engines contains LayoutEngine.ALGORITHM, mostlyContains($aiSignature, 0.8))
then
$aiSignature.remove("X.9.0", "removed because already contained by alogrithm signature");
$signature.addEngine(LayoutEngine.AI);
end
// Rule unit: X.10
rule "X.10.0: remove false positives of ai"
when
$anyImage: Image(engines contains LayoutEngine.ALGORITHM)
$aiSignature: Image(imageType == ImageType.SIGNATURE, engines contains LayoutEngine.AI, !mostlyContainedBy($anyImage, 0.8))
then
$aiSignature.remove("X.10.0", "Removed because false positive");
end
//------------------------------------ File attributes rules ------------------------------------
// Rule unit: FA.1
@@ -54,6 +54,8 @@ import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.ManualRecategorization;
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.ManualLegalBasisChange;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.LayoutEngine;
global Document document
global EntityCreationService entityCreationService
global ManualChangesApplicationService manualChangesApplicationService
@@ -80,12 +82,12 @@ rule "CBI.0.0: Redact CBI Authors (non vertebrate Study)"
//------------------------------------ PII rules ------------------------------------
// Rule unit: PII.0
rule "PII.0.1: Redact all PII (non vertebrate study)"
rule "PII.0.0: Redact all PII (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$pii: TextEntity(type() == "PII", dictionaryEntry)
then
$pii.redact("PII.0.1", "Personal Information found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
$pii.redact("PII.0.0", "Personal Information found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
end
@@ -379,6 +381,27 @@ rule "X.8.1: Remove Entity when intersected by imported Entity"
end
// Rule unit: X.9
rule "X.9.0: Merge mostly contained signatures"
when
$aiSignature: Image(imageType == ImageType.SIGNATURE, engines contains LayoutEngine.AI)
$signature: Image(imageType == ImageType.SIGNATURE, engines contains LayoutEngine.ALGORITHM, mostlyContains($aiSignature, 0.8))
then
$aiSignature.remove("X.9.0", "removed because already contained by alogrithm signature");
$signature.addEngine(LayoutEngine.AI);
end
// Rule unit: X.10
rule "X.10.0: remove false positives of ai"
when
$anyImage: Image(engines contains LayoutEngine.ALGORITHM)
$aiSignature: Image(imageType == ImageType.SIGNATURE, engines contains LayoutEngine.AI, !mostlyContainedBy($anyImage, 0.8))
then
$aiSignature.remove("X.10.0", "Removed because false positive");
end
//------------------------------------ File attributes rules ------------------------------------
// Rule unit: FA.1
@@ -54,6 +54,8 @@ import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.ManualRecategorization;
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.ManualLegalBasisChange;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.LayoutEngine;
global Document document
global EntityCreationService entityCreationService
global ManualChangesApplicationService manualChangesApplicationService
@@ -500,6 +502,27 @@ rule "X.8.1: Remove Entity when intersected by imported Entity"
end
// Rule unit: X.9
rule "X.9.0: Merge mostly contained signatures"
when
$aiSignature: Image(imageType == ImageType.SIGNATURE, engines contains LayoutEngine.AI)
$signature: Image(imageType == ImageType.SIGNATURE, engines contains LayoutEngine.ALGORITHM, mostlyContains($aiSignature, 0.8))
then
$aiSignature.remove("X.9.0", "removed because already contained by alogrithm signature");
$signature.addEngine(LayoutEngine.AI);
end
// Rule unit: X.10
rule "X.10.0: remove false positives of ai"
when
$anyImage: Image(engines contains LayoutEngine.ALGORITHM)
$aiSignature: Image(imageType == ImageType.SIGNATURE, engines contains LayoutEngine.AI, !mostlyContainedBy($anyImage, 0.8))
then
$aiSignature.remove("X.10.0", "Removed because false positive");
end
//------------------------------------ File attributes rules ------------------------------------
// Rule unit: FA.1
@@ -54,6 +54,8 @@ import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.ManualRecategorization;
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.ManualLegalBasisChange;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.LayoutEngine;
global Document document
global EntityCreationService entityCreationService
global ManualChangesApplicationService manualChangesApplicationService
@@ -416,6 +418,27 @@ rule "X.8.1: Remove Entity when intersected by imported Entity"
end
// Rule unit: X.9
rule "X.9.0: Merge mostly contained signatures"
when
$aiSignature: Image(imageType == ImageType.SIGNATURE, engines contains LayoutEngine.AI)
$signature: Image(imageType == ImageType.SIGNATURE, engines contains LayoutEngine.ALGORITHM, mostlyContains($aiSignature, 0.8))
then
$aiSignature.remove("X.9.0", "removed because already contained by alogrithm signature");
$signature.addEngine(LayoutEngine.AI);
end
// Rule unit: X.10
rule "X.10.0: remove false positives of ai"
when
$anyImage: Image(engines contains LayoutEngine.ALGORITHM)
$aiSignature: Image(imageType == ImageType.SIGNATURE, engines contains LayoutEngine.AI, !mostlyContainedBy($anyImage, 0.8))
then
$aiSignature.remove("X.10.0", "Removed because false positive");
end
//------------------------------------ File attributes rules ------------------------------------
// Rule unit: FA.1
@@ -459,7 +459,6 @@ rule "ETC.5.0: Skip dossier_redaction entries if confidentiality is 'confidentia
end
rule "ETC.5.1: Remove dossier_redaction entries if confidentiality is not 'confidential'"
salience 256
when
not FileAttribute(label == "Confidentiality", value == "confidential")
$dossierRedaction: TextEntity(type() == "dossier_redaction")
@@ -33,7 +33,11 @@ public class RuleFileMigrator {
rulesToAdd.forEach(ruleFileBluePrint::addRule);
}
String migratedRulesString = RuleFileFactory.buildRuleString(ruleFileBluePrint);
RuleFileBluePrint newBluePrint = new RuleFileBluePrint(combinedBluePrint.imports(),
combinedBluePrint.globals(),
combinedBluePrint.queries(),
ruleFileBluePrint.ruleClasses());
String migratedRulesString = RuleFileFactory.buildRuleString(newBluePrint);
String migratedFilePath = ruleFile.getAbsolutePath();
try (var out = new FileOutputStream(migratedFilePath)) {
out.write(migratedRulesString.getBytes(StandardCharsets.UTF_8));
@@ -54,6 +54,8 @@ import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.ManualRecategorization;
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.ManualLegalBasisChange;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.LayoutEngine;
global Document document
global EntityCreationService entityCreationService
global ManualChangesApplicationService manualChangesApplicationService
@@ -157,18 +159,17 @@ rule "CBI.3.0: Redacted because Section contains a vertebrate"
rule "CBI.3.1: Redacted because table row contains a vertebrate"
when
$table: Table(hasEntitiesOfType("vertebrate"), (hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address")))
$table: Table(hasEntitiesOfType("vertebrate"), hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address"))
$cellsWithvertebrate: TableCell() from $table.streamTableCellsWhichContainType("vertebrate").toList()
$tableCell: TableCell(row == $cellsWithvertebrate.row) from $table.streamTableCells().toList()
$authorOrAddress: TextEntity(type() == "CBI_author" || type() == "CBI_address", active()) from $tableCell.getEntities()
then
$table.streamEntitiesWhereRowContainsEntitiesOfType(List.of("vertebrate"))
.filter(entity -> entity.getType().equals("CBI_author") || entity.getType().equals("CBI_address"))
.forEach(entity -> {
entity.applyWithReferences(
$authorOrAddress.applyWithReferences(
"CBI.3.1",
"Vertebrate found",
"Reg (EC) No 1107/2009 Art. 63 (2g)",
$table.getEntitiesOfTypeInSameRow("vertebrate", entity)
$table.getEntitiesOfTypeInSameRow("vertebrate", $authorOrAddress)
);
});
end
@@ -208,23 +209,21 @@ rule "CBI.4.0: Do not redact Names and Addresses if no_redaction_indicator is fo
});
end
rule "CBI.4.1: Don't redact authors or addresses which appear in the same row as a vertebrate and a no_redaction_indicator"
rule "CBI.4.1: Redacted because table row contains a vertebrate"
when
$table: Table(hasEntitiesOfType("no_redaction_indicator"),
hasEntitiesOfType("vertebrate"),
(hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address")))
$table: Table(hasEntitiesOfType("no_redaction_indicator"), hasEntitiesOfType("vertebrate"), hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address"))
TableCell($row: row) from $table.streamTableCellsWhichContainType("vertebrate").toList()
TableCell(row == $row) from $table.streamTableCellsWhichContainType("no_redaction_indicator").toList()
$tableCell: TableCell(row == $row) from $table.streamTableCells().toList()
$authorOrAddress: TextEntity(type() == "CBI_author" || type() == "CBI_address", active()) from $tableCell.getEntities()
then
$table.streamEntitiesWhereRowContainsEntitiesOfType(List.of("vertebrate", "no-redaction_indicator"))
.filter(entity -> entity.getType().equals("CBI_author") || entity.getType().equals("CBI_address"))
.forEach(entity -> {
entity.skipWithReferences(
$authorOrAddress.skipWithReferences(
"CBI.4.1",
"Vertebrate but a no redaction indicator found",
Stream.concat(
$table.getEntitiesOfTypeInSameRow("vertebrate", entity).stream(),
$table.getEntitiesOfTypeInSameRow("no_redaction_indicator", entity).stream()).toList()
$table.getEntitiesOfTypeInSameRow("vertebrate", $authorOrAddress).stream(),
$table.getEntitiesOfTypeInSameRow("no_redaction_indicator", $authorOrAddress).stream()).toList()
);
});
end
@@ -251,22 +250,20 @@ rule "CBI.5.0: Redact Names and Addresses if no_redaction_indicator but also red
rule "CBI.5.1: Redact Names and Addresses if no_redaction_indicator but also redaction_indicator is found in table row"
when
$table: Table(hasEntitiesOfType("no_redaction_indicator"),
hasEntitiesOfType("redaction_indicator"),
(hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address")))
$table: Table(hasEntitiesOfType("no_redaction_indicator"), hasEntitiesOfType("redaction_indicator"), hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address"))
TableCell($row: row) from $table.streamTableCellsWhichContainType("redaction_indicator").toList()
TableCell(row == $row) from $table.streamTableCellsWhichContainType("no_redaction_indicator").toList()
$tableCell: TableCell(row == $row) from $table.streamTableCells().toList()
$entity: TextEntity(type() == "CBI_author" || type() == "CBI_address", active()) from $tableCell.getEntities()
then
$table.streamEntitiesWhereRowContainsEntitiesOfType(List.of("redaction_indicator", "no_redaction_indicator"))
.filter(entity -> entity.getType().equals("CBI_author") || entity.getType().equals("CBI_address"))
.forEach(entity -> {
entity.applyWithReferences(
$entity.applyWithReferences(
"CBI.5.1",
"no_redaction_indicator but also redaction_indicator found",
"Reg (EC) No 1107/2009 Art. 63 (2g)",
Stream.concat(
$table.getEntitiesOfTypeInSameRow("redaction_indicator", entity).stream(),
$table.getEntitiesOfTypeInSameRow("no_redaction_indicator", entity).stream()).toList()
$table.getEntitiesOfTypeInSameRow("redaction_indicator", $entity).stream(),
$table.getEntitiesOfTypeInSameRow("no_redaction_indicator", $entity).stream()).toList()
);
});
end
@@ -356,18 +353,17 @@ rule "CBI.8.0: Redacted because Section contains must_redact entity"
rule "CBI.8.1: Redacted because table row contains must_redact entity"
when
$table: Table(hasEntitiesOfType("must_redact"), (hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address")))
$table: Table(hasEntitiesOfType("must_redact"), hasEntitiesOfType("CBI_author") || hasEntitiesOfType("CBI_address"))
$cellsWithMustRedact: TableCell() from $table.streamTableCellsWhichContainType("must_redact").toList()
$tableCell: TableCell(row == $cellsWithMustRedact.row) from $table.streamTableCells().toList()
$authorOrAddress: TextEntity(type() == "CBI_author" || type() == "CBI_address", active()) from $tableCell.getEntities()
then
$table.streamEntitiesWhereRowContainsEntitiesOfType(List.of("must_redact"))
.filter(entity -> entity.getType().equals("CBI_author") || entity.getType().equals("CBI_address"))
.forEach(entity -> {
entity.applyWithReferences(
"CBI.8.1",
"Must_redact found",
"Reg (EC) No 1107/2009 Art. 63 (2g)",
$table.getEntitiesOfTypeInSameRow("must_redact", entity)
);
});
$authorOrAddress.applyWithReferences(
"CBI.8.1",
"Must_redact found",
"Reg (EC) No 1107/2009 Art. 63 (2g)",
$table.getEntitiesOfTypeInSameRow("must_redact", $authorOrAddress)
);
end
@@ -439,22 +435,7 @@ rule "CBI.11.0: Recommend all CBI_author entities in Table with Vertebrate Study
// Rule unit: CBI.12
rule "CBI.12.0: Redact and recommend TableCell with header 'Author' or 'Author(s)' and header 'Vertebrate study Y/N' with value 'Yes'"
agenda-group "LOCAL_DICTIONARY_ADDS"
when
$table: Table(hasHeader("Author(s)") || hasHeader("Author"), hasHeaderIgnoreCase("Vertebrate Study Y/N"))
TableCell(header, containsAnyStringIgnoreCase("Author", "Author(s)"), $authorCol: col) from $table.streamHeaders().toList()
TableCell(header, containsStringIgnoreCase("Vertebrate study Y/N"), $vertebrateCol: col) from $table.streamHeaders().toList()
$rowCell: TableCell(!header, containsAnyString("Yes", "Y"), $rowWithYes: row) from $table.streamCol($vertebrateCol).toList()
TableCell(row == $rowWithYes) from $table.streamCol($authorCol).toList()
then
entityCreationService.bySemanticNode($rowCell, "must_redact", EntityType.HINT)
.ifPresent(yesEntity -> {
yesEntity.skip("CBI.12.0", "must_redact");
});
end
rule "CBI.12.1: Redact and recommend TableCell with header 'Author' or 'Author(s)' and header 'Vertebrate study Y/N' with value 'Yes' (non vertebrate study)"
rule "CBI.12.0: Redact and recommend TableCell with header 'Author' or 'Author(s)' and header 'Vertebrate study Y/N' with value 'Yes' (non vertebrate study)"
agenda-group "LOCAL_DICTIONARY_ADDS"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
@@ -466,13 +447,13 @@ rule "CBI.12.1: Redact and recommend TableCell with header 'Author' or 'Author(s
then
entityCreationService.bySemanticNode($authorCell, "CBI_author", EntityType.ENTITY)
.ifPresent(authorEntity -> {
authorEntity.redact("CBI.12.1", "Redacted because it's row belongs to a vertebrate study", "Article 39(e)(3) of Regulation (EC) No 178/2002");
authorEntity.redact("CBI.12.0", "Redacted because it's row belongs to a vertebrate study", "Article 39(e)(3) of Regulation (EC) No 178/2002");
dictionary.addMultipleAuthorsAsRecommendation(authorEntity);
});
end
rule "CBI.12.2: Redact and recommend TableCell with header 'Author' or 'Author(s)' and header 'Vertebrate study Y/N' with value 'Yes' (vertebrate study)"
rule "CBI.12.1: Redact and recommend TableCell with header 'Author' or 'Author(s)' and header 'Vertebrate study Y/N' with value 'Yes' (vertebrate study)"
agenda-group "LOCAL_DICTIONARY_ADDS"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
@@ -485,13 +466,13 @@ rule "CBI.12.2: Redact and recommend TableCell with header 'Author' or 'Author(s
entityCreationService.bySemanticNode($authorCell, "CBI_author", EntityType.ENTITY)
.ifPresent(authorEntity -> {
authorEntity.redact("CBI.12.2", "Redacted because it's row belongs to a vertebrate study", "Article 39(e)(2) of Regulation (EC) No 178/2002");
authorEntity.redact("CBI.12.1", "Redacted because it's row belongs to a vertebrate study", "Article 39(e)(2) of Regulation (EC) No 178/2002");
dictionary.addMultipleAuthorsAsRecommendation(authorEntity);
});
end
rule "CBI.12.3: Skip TableCell with header 'Author' or 'Author(s)' and header 'Vertebrate study Y/N' with value 'No'"
rule "CBI.12.2: Skip TableCell with header 'Author' or 'Author(s)' and header 'Vertebrate study Y/N' with value 'No'"
when
$table: Table(hasHeader("Author(s)") || hasHeader("Author"), hasHeaderIgnoreCase("Vertebrate Study Y/N"))
TableCell(header, containsAnyStringIgnoreCase("Author", "Author(s)"), $authorCol: col) from $table.streamHeaders().toList()
@@ -500,7 +481,7 @@ rule "CBI.12.3: Skip TableCell with header 'Author' or 'Author(s)' and header 'V
$authorCell: TableCell(row == $rowWithNo) from $table.streamCol($authorCol).toList()
then
entityCreationService.bySemanticNode($authorCell, "CBI_author", EntityType.ENTITY)
.ifPresent(authorEntity -> authorEntity.skip("CBI.12.3", "Not redacted because it's row does not belong to a vertebrate study"));
.ifPresent(authorEntity -> authorEntity.skip("CBI.12.2", "Not redacted because it's row does not belong to a vertebrate study"));
end
@@ -518,12 +499,9 @@ rule "CBI.13.0: Ignore CBI Address recommendations"
// Rule unit: CBI.14
rule "CBI.14.0: Redact CBI_sponsor entities if preceded by \"batches produced at\""
when
$section: Section(containsStringIgnoreCase("batches produced at"))
$sponsorEntity: TextEntity(type() == "CBI_sponsor", textBefore.contains("batches produced at"))
then
$sponsorEntity.redact("CBI.14.0", "Redacted because it represents a sponsor company", "Reg (EC) No 1107/2009 Art. 63 (2g)");
entityCreationService.byString("batches produced at", "must_redact", EntityType.HINT, $section)
.forEach(entity -> entity.skip("CBI.14.0", "must_redact"));
end
@@ -544,10 +522,10 @@ rule "CBI.15.0: Redact row if row contains \"determination of residues\" and liv
containsStringIgnoreCase($residueKeyword),
containsStringIgnoreCase($keyword))
then
entityCreationService.byString($keyword, "must_redact", EntityType.HINT, $section)
.forEach(entity -> entity.skip("CBI.15.0", "must_redact"));
entityCreationService.byString($keyword, "must_redact", EntityType.ENTITY, $section)
.toList();
$section.getEntitiesOfType(List.of("CBI_author", "CBI_address"))
$section.getEntitiesOfType(List.of($keyword, $residueKeyword))
.forEach(redactionEntity -> redactionEntity.redact("CBI.15.0", "Determination of residues and keyword \"" + $keyword + "\" was found.", "Reg (EC) No 1107/2009 Art. 63 (2g)"));
end
@@ -565,8 +543,8 @@ rule "CBI.15.1: Redact CBI_author and CBI_address if row contains \"determinatio
$residueKeyword: String() from List.of("determination of residues", "determination of total residues")
$table: Table(containsStringIgnoreCase($residueKeyword), containsStringIgnoreCase($keyword))
then
entityCreationService.byString($keyword, "must_redact", EntityType.HINT, $table)
.forEach(entity -> entity.skip("CBI.15.1", "must_redact"));
entityCreationService.byString($keyword, "must_redact", EntityType.ENTITY, $table)
.toList();
$table.streamEntitiesWhereRowContainsStringsIgnoreCase(List.of($keyword, $residueKeyword))
.filter(redactionEntity -> redactionEntity.isAnyType(List.of("CBI_author", "CBI_address")))
@@ -575,19 +553,7 @@ rule "CBI.15.1: Redact CBI_author and CBI_address if row contains \"determinatio
// Rule unit: CBI.16
rule "CBI.16.0: Add CBI_author with \"et al.\" RegEx"
agenda-group "LOCAL_DICTIONARY_ADDS"
when
$section: Section(containsString("et al."))
then
entityCreationService.byRegex("\\b([A-ZÄÖÜ][^\\s\\.,]+( [A-ZÄÖÜ]{1,2}\\.?)?( ?[A-ZÄÖÜ]\\.?)?) et al\\.?", "CBI_author", EntityType.ENTITY, 1, $section)
.forEach(entity -> {
entity.redact("CBI.16.0", "Author found by \"et al\" regex", "Reg (EC) No 1107/2009 Art. 63 (2g)");
dictionary.recommendEverywhere(entity);
});
end
rule "CBI.16.1: Add CBI_author with \"et al.\" RegEx (non vertebrate study)"
rule "CBI.16.0: Add CBI_author with \"et al.\" RegEx (non vertebrate study)"
agenda-group "LOCAL_DICTIONARY_ADDS"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
@@ -595,12 +561,12 @@ rule "CBI.16.1: Add CBI_author with \"et al.\" RegEx (non vertebrate study)"
then
entityCreationService.byRegex("\\b([A-ZÄÖÜ][^\\s\\.,]+( [A-ZÄÖÜ]{1,2}\\.?)?( ?[A-ZÄÖÜ]\\.?)?) et al\\.?", "CBI_author", EntityType.ENTITY, 1, $section)
.forEach(entity -> {
entity.redact("CBI.16.1", "Author found by \"et al\" regex", "Article 39(e)(3) of Regulation (EC) No 178/2002");
entity.redact("CBI.16.0", "Author found by \"et al\" regex", "Article 39(e)(3) of Regulation (EC) No 178/2002");
dictionary.recommendEverywhere(entity);
});
end
rule "CBI.16.2: Add CBI_author with \"et al.\" RegEx (vertebrate study)"
rule "CBI.16.1: Add CBI_author with \"et al.\" RegEx (vertebrate study)"
agenda-group "LOCAL_DICTIONARY_ADDS"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
@@ -608,7 +574,7 @@ rule "CBI.16.2: Add CBI_author with \"et al.\" RegEx (vertebrate study)"
then
entityCreationService.byRegex("\\b([A-ZÄÖÜ][^\\s\\.,]+( [A-ZÄÖÜ]{1,2}\\.?)?( ?[A-ZÄÖÜ]\\.?)?) et al\\.?", "CBI_author", EntityType.ENTITY, 1, $section)
.forEach(entity -> {
entity.redact("CBI.16.2", "Author found by \"et al\" regex", "Article 39(e)(2) of Regulation (EC) No 178/2002");
entity.redact("CBI.16.1", "Author found by \"et al\" regex", "Article 39(e)(2) of Regulation (EC) No 178/2002");
dictionary.recommendEverywhere(entity);
});
end
@@ -666,19 +632,7 @@ rule "CBI.19.0: Expand CBI_author entities with salutation prefix"
// Rule unit: CBI.20
rule "CBI.20.0: Redact between \"PERFORMING LABORATORY\" and \"LABORATORY PROJECT ID:\")"
agenda-group "LOCAL_DICTIONARY_ADDS"
when
$section: Section(!hasTables(), containsString("PERFORMING LABORATORY:"), containsString("LABORATORY PROJECT ID:"))
then
entityCreationService.betweenStrings("PERFORMING LABORATORY:", "LABORATORY PROJECT ID:", "CBI_address", EntityType.ENTITY, $section)
.forEach(laboratoryEntity -> {
laboratoryEntity.redact("CBI.20.0", "PERFORMING LABORATORY was found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
dictionary.recommendEverywhere(laboratoryEntity);
});
end
rule "CBI.20.1: Redact between \"PERFORMING LABORATORY\" and \"LABORATORY PROJECT ID:\" (non vertebrate study)"
rule "CBI.20.0: Redact between \"PERFORMING LABORATORY\" and \"LABORATORY PROJECT ID:\" (non vertebrate study)"
agenda-group "LOCAL_DICTIONARY_ADDS"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
@@ -686,12 +640,12 @@ rule "CBI.20.1: Redact between \"PERFORMING LABORATORY\" and \"LABORATORY PROJEC
then
entityCreationService.betweenStrings("PERFORMING LABORATORY:", "LABORATORY PROJECT ID:", "CBI_address", EntityType.ENTITY, $section)
.forEach(laboratoryEntity -> {
laboratoryEntity.skip("CBI.20.1", "PERFORMING LABORATORY was found for non vertebrate study");
laboratoryEntity.skip("CBI.20.0", "PERFORMING LABORATORY was found for non vertebrate study");
dictionary.recommendEverywhere(laboratoryEntity);
});
end
rule "CBI.20.2: Redact between \"PERFORMING LABORATORY\" and \"LABORATORY PROJECT ID:\" (vertebrate study)"
rule "CBI.20.1: Redact between \"PERFORMING LABORATORY\" and \"LABORATORY PROJECT ID:\" (vertebrate study)"
agenda-group "LOCAL_DICTIONARY_ADDS"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
@@ -699,7 +653,7 @@ rule "CBI.20.2: Redact between \"PERFORMING LABORATORY\" and \"LABORATORY PROJEC
then
entityCreationService.betweenStrings("PERFORMING LABORATORY:", "LABORATORY PROJECT ID:", "CBI_address", EntityType.ENTITY, $section)
.forEach(laboratoryEntity -> {
laboratoryEntity.redact("CBI.20.2", "PERFORMING LABORATORY was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
laboratoryEntity.redact("CBI.20.1", "PERFORMING LABORATORY was found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
dictionary.recommendEverywhere(laboratoryEntity);
});
end
@@ -745,93 +699,53 @@ rule "CBI.22.0: Redact Addresses in Reference Tables for vertebrate studies in n
//------------------------------------ PII rules ------------------------------------
// Rule unit: PII.0
rule "PII.0.0: Redact all PII"
when
$pii: TextEntity(type() == "PII", dictionaryEntry)
then
$pii.redact("PII.0.0", "Personal Information found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
end
rule "PII.0.1: Redact all PII (non vertebrate study)"
rule "PII.0.0: Redact all PII (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$pii: TextEntity(type() == "PII", dictionaryEntry)
then
$pii.redact("PII.0.1", "Personal Information found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
$pii.redact("PII.0.0", "Personal Information found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
end
rule "PII.0.2: Redact all PII (vertebrate study)"
rule "PII.0.1: Redact all PII (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$pii: TextEntity(type() == "PII", dictionaryEntry)
then
$pii.redact("PII.0.2", "Personal Information found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
$pii.redact("PII.0.1", "Personal Information found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
end
// Rule unit: PII.1
rule "PII.1.0: Redact Emails by RegEx"
when
$section: Section(containsString("@"))
then
entityCreationService.byRegex("\\b([A-Za-z0-9._%+\\-]+@[A-Za-z0-9.\\-]+\\.[A-Za-z\\-]{1,23}[A-Za-z])\\b", "PII", EntityType.ENTITY, 1, $section)
.forEach(emailEntity -> emailEntity.redact("PII.1.0", "Found by Email Regex", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.1.1: Redact Emails by RegEx (Non vertebrate study)"
rule "PII.1.0: Redact Emails by RegEx (Non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(containsString("@"))
then
entityCreationService.byRegex("\\b([A-Za-z0-9._%+\\-]+@[A-Za-z0-9.\\-]+\\.[A-Za-z\\-]{1,23}[A-Za-z])\\b", "PII", EntityType.ENTITY, 1, $section)
.forEach(emailEntity -> emailEntity.redact("PII.1.1", "Found by Email Regex", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
.forEach(emailEntity -> emailEntity.redact("PII.1.0", "Found by Email Regex", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
end
rule "PII.1.2: Redact Emails by RegEx (vertebrate study)"
rule "PII.1.1: Redact Emails by RegEx (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(containsString("@"))
then
entityCreationService.byRegex("\\b([A-Za-z0-9._%+\\-]+@[A-Za-z0-9.\\-]+\\.[A-Za-z\\-]{1,23}[A-Za-z])\\b", "PII", EntityType.ENTITY, 1, $section)
.forEach(emailEntity -> emailEntity.redact("PII.1.2", "Found by Email Regex", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
.forEach(emailEntity -> emailEntity.redact("PII.1.1", "Found by Email Regex", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
end
rule "PII.1.3: Redact typoed Emails with indicator"
rule "PII.1.2: Redact typoed Emails with indicator"
when
$section: Section(containsString("@") || containsStringIgnoreCase("mail"))
then
entityCreationService.byRegexIgnoreCase("mail[:\\.\\s]{1,2}([\\w\\/\\-\\{\\(\\. ]{3,20}(@|a|f)\\s?[\\w\\/\\-\\{\\(\\. ]{3,20}(\\. \\w{2,4}\\b|\\.\\B|\\.\\w{1,4}\\b))", "PII", EntityType.ENTITY, 1, $section)
.forEach(emailEntity -> emailEntity.redact("PII.1.3", "Personal information found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
end
rule "PII.1.4: Redact typoed Emails with indicator"
when
$section: Section(containsString("@") || containsStringIgnoreCase("mail"))
then
entityCreationService.byRegexIgnoreCase("mail[:\\.\\s]{1,2}([\\w\\/\\-\\{\\(\\. ]{3,20}(@|a|f)\\s?[\\w\\/\\-\\{\\(\\. ]{3,20}(\\. \\w{2,4}\\b|\\.\\B|\\.\\w{1,4}\\b))", "PII", EntityType.ENTITY, 1, $section)
.forEach(emailEntity -> emailEntity.redact("PII.1.4", "Personal information found", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
.forEach(emailEntity -> emailEntity.redact("PII.1.2", "Personal information found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
end
// Rule unit: PII.2
rule "PII.2.0: Redact Phone and Fax by RegEx"
when
$section: Section(containsString("Contact") ||
containsString("Telephone") ||
containsString("Phone") ||
containsString("Ph.") ||
containsString("Fax") ||
containsString("Tel") ||
containsString("Ter") ||
containsString("Mobile") ||
containsString("Fel") ||
containsString("Fer"))
then
entityCreationService.byRegexIgnoreCase("\\b(contact|telephone|phone|ph\\.|fax|tel|ter|mobile|fel|fer)[a-zA-Z\\s]{0,10}[:.\\s]{0,3}([\\+\\d\\(][\\s\\d\\(\\)\\-\\/\\.]{4,100}\\d)\\b", "PII", EntityType.ENTITY, 2, $section)
.forEach(contactEntity -> contactEntity.redact("PII.2.0", "Found by Phone and Fax Regex", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.2.1: Redact Phone and Fax by RegEx (non vertebrate study)"
rule "PII.2.0: Redact Phone and Fax by RegEx (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(containsString("Contact") ||
@@ -846,10 +760,10 @@ rule "PII.2.1: Redact Phone and Fax by RegEx (non vertebrate study)"
containsString("Fer"))
then
entityCreationService.byRegexIgnoreCase("\\b(contact|telephone|phone|ph\\.|fax|tel|ter|mobile|fel|fer)[a-zA-Z\\s]{0,10}[:.\\s]{0,3}([\\+\\d\\(][\\s\\d\\(\\)\\-\\/\\.]{4,100}\\d)\\b", "PII", EntityType.ENTITY, 2, $section)
.forEach(contactEntity -> contactEntity.redact("PII.2.1", "Found by Phone and Fax Regex", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
.forEach(contactEntity -> contactEntity.redact("PII.2.0", "Found by Phone and Fax Regex", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
end
rule "PII.2.2: Redact Phone and Fax by RegEx (vertebrate study)"
rule "PII.2.1: Redact Phone and Fax by RegEx (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(containsString("Contact") ||
@@ -864,48 +778,41 @@ rule "PII.2.2: Redact Phone and Fax by RegEx (vertebrate study)"
containsString("Fer"))
then
entityCreationService.byRegexIgnoreCase("\\b(contact|telephone|phone|ph\\.|fax|tel|ter|mobile|fel|fer)[a-zA-Z\\s]{0,10}[:.\\s]{0,3}([\\+\\d\\(][\\s\\d\\(\\)\\-\\/\\.]{4,100}\\d)\\b", "PII", EntityType.ENTITY, 2, $section)
.forEach(contactEntity -> contactEntity.redact("PII.2.2", "Found by Phone and Fax Regex", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
.forEach(contactEntity -> contactEntity.redact("PII.2.1", "Found by Phone and Fax Regex", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
end
rule "PII.2.3: Redact phone numbers without indicators"
rule "PII.2.2: Redact phone numbers without indicators"
when
$section: Section(containsString("+"))
then
entityCreationService.byRegex("(\\+[\\dO]{1,2} )(\\([\\dO]{1,3}\\))?[\\d\\-O ]{8,15}", "PII", EntityType.ENTITY, $section)
.forEach(entity -> entity.redact("PII.2.3", "Personal information found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
.forEach(entity -> entity.redact("PII.2.2", "Personal information found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
end
// Rule unit: PII.3
rule "PII.3.0: Redact telephone numbers by RegEx"
when
$section: Section(matchesRegex("[+]\\d{1,}"))
then
entityCreationService.byRegex("((([+]\\d{1,3} (\\d{7,12})\\b)|([+]\\d{1,3}(\\d{3,12})\\b|[+]\\d{1,3}([ -]\\(?\\d{1,6}\\)?){2,4})|[+]\\d{1,3} ?((\\d{2,6}\\)?)([ -]\\d{2,6}){1,4}))(-\\d{1,3})?\\b)", "PII", EntityType.ENTITY, 1, $section)
.forEach(entity -> entity.redact("PII.3.0", "Telephone number found by regex", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.3.1: Redact telephone numbers by RegEx (Non vertebrate study)"
rule "PII.3.0: Redact telephone numbers by RegEx (Non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(matchesRegex("[+]\\d{1,}"))
then
entityCreationService.byRegex("((([+]\\d{1,3} (\\d{7,12})\\b)|([+]\\d{1,3}(\\d{3,12})\\b|[+]\\d{1,3}([ -]\\(?\\d{1,6}\\)?){2,4})|[+]\\d{1,3} ?((\\d{2,6}\\)?)([ -]\\d{2,6}){1,4}))(-\\d{1,3})?\\b)", "PII", EntityType.ENTITY, 1, $section)
.forEach(entity -> entity.redact("PII.3.1", "Telephone number found by regex", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
.forEach(entity -> entity.redact("PII.3.0", "Telephone number found by regex", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
end
rule "PII.3.2: Redact telephone numbers by RegEx (vertebrate study)"
rule "PII.3.1: Redact telephone numbers by RegEx (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(matchesRegex("[+]\\d{1,}"))
then
entityCreationService.byRegex("((([+]\\d{1,3} (\\d{7,12})\\b)|([+]\\d{1,3}(\\d{3,12})\\b|[+]\\d{1,3}([ -]\\(?\\d{1,6}\\)?){2,4})|[+]\\d{1,3} ?((\\d{2,6}\\)?)([ -]\\d{2,6}){1,4}))(-\\d{1,3})?\\b)", "PII", EntityType.ENTITY, 1, $section)
.forEach(entity -> entity.redact("PII.3.2", "Telephone number found by regex", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
.forEach(entity -> entity.redact("PII.3.1", "Telephone number found by regex", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
end
// Rule unit: PII.4
rule "PII.4.0: Redact line after contact information keywords"
rule "PII.4.0: Redact line after contact information keywords (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$contactKeyword: String() from List.of("Contact point:",
"Contact:",
"Alternative contact:",
@@ -931,9 +838,9 @@ rule "PII.4.0: Redact line after contact information keywords"
.forEach(contactEntity -> contactEntity.redact("PII.4.0", "Found after \"" + $contactKeyword + "\" contact keyword", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.4.1: Redact line after contact information keywords (non vertebrate study)"
rule "PII.4.1: Redact line after contact information keywords (vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$contactKeyword: String() from List.of("Contact point:",
"Contact:",
"Alternative contact:",
@@ -959,49 +866,9 @@ rule "PII.4.1: Redact line after contact information keywords (non vertebrate st
.forEach(contactEntity -> contactEntity.redact("PII.4.1", "Found after \"" + $contactKeyword + "\" contact keyword", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.4.2: Redact line after contact information keywords (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$contactKeyword: String() from List.of("Contact point:",
"Contact:",
"Alternative contact:",
"European contact:",
"No:",
"Contact:",
"Tel.:",
"Tel:",
"Telephone number:",
"Telephone No:",
"Telephone:",
"Phone No.",
"Phone:",
"Fax number:",
"Fax:",
"E-mail:",
"Email:",
"e-mail:",
"E-mail address:")
$section: Section(containsString($contactKeyword))
then
entityCreationService.lineAfterString($contactKeyword, "PII", EntityType.ENTITY, $section)
.forEach(contactEntity -> contactEntity.redact("PII.4.2", "Found after \"" + $contactKeyword + "\" contact keyword", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
// Rule unit: PII.5
rule "PII.5.0: Redact line after contact information keywords reduced"
when
$contactKeyword: String() from List.of("Contact point:",
"Contact:",
"Alternative contact:",
"European contact:")
$section: Section(containsString($contactKeyword))
then
entityCreationService.lineAfterString($contactKeyword, "PII", EntityType.ENTITY, $section)
.forEach(contactEntity -> contactEntity.redact("PII.5.0", "Found after \"" + $contactKeyword + "\" contact keyword", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.5.1: Redact line after contact information keywords reduced (non vertebrate study)"
rule "PII.5.0: Redact line after contact information keywords reduced (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$contactKeyword: String() from List.of("Contact point:",
@@ -1011,10 +878,10 @@ rule "PII.5.1: Redact line after contact information keywords reduced (non verte
$section: Section(containsString($contactKeyword))
then
entityCreationService.lineAfterString($contactKeyword, "PII", EntityType.ENTITY, $section)
.forEach(contactEntity -> contactEntity.redact("PII.5.1", "Found after \"" + $contactKeyword + "\" contact keyword", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
.forEach(contactEntity -> contactEntity.redact("PII.5.0", "Found after \"" + $contactKeyword + "\" contact keyword", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
end
rule "PII.5.2: Redact line after contact information keywords reduced (Vertebrate study)"
rule "PII.5.1: Redact line after contact information keywords reduced (Vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$contactKeyword: String() from List.of("Contact point:",
@@ -1024,23 +891,12 @@ rule "PII.5.2: Redact line after contact information keywords reduced (Vertebrat
$section: Section(containsString($contactKeyword))
then
entityCreationService.lineAfterString($contactKeyword, "PII", EntityType.ENTITY, $section)
.forEach(contactEntity -> contactEntity.redact("PII.5.2", "Found after \"" + $contactKeyword + "\" contact keyword", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
.forEach(contactEntity -> contactEntity.redact("PII.5.1", "Found after \"" + $contactKeyword + "\" contact keyword", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
end
// Rule unit: PII.6
rule "PII.6.0: Redact line between contact keywords"
when
$section: Section((containsString("No:") && containsString("Fax")) || (containsString("Contact:") && containsString("Tel")))
then
Stream.concat(
entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
)
.forEach(contactEntity -> contactEntity.redact("PII.6.0", "Found between contact keywords", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.6.1: Redact line between contact keywords (non vertebrate study)"
rule "PII.6.0: Redact line between contact keywords (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section((containsString("No:") && containsString("Fax")) || (containsString("Contact:") && containsString("Tel")))
@@ -1049,10 +905,10 @@ rule "PII.6.1: Redact line between contact keywords (non vertebrate study)"
entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
)
.forEach(contactEntity -> contactEntity.redact("PII.6.1", "Found between contact keywords", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
.forEach(contactEntity -> contactEntity.redact("PII.6.0", "Found between contact keywords", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
end
rule "PII.6.2: Redact line between contact keywords (vertebrate study)"
rule "PII.6.1: Redact line between contact keywords (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section((containsString("No:") && containsString("Fax")) || (containsString("Contact:") && containsString("Tel")))
@@ -1061,28 +917,12 @@ rule "PII.6.2: Redact line between contact keywords (vertebrate study)"
entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
)
.forEach(contactEntity -> contactEntity.redact("PII.6.2", "Found between contact keywords", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
.forEach(contactEntity -> contactEntity.redact("PII.6.1", "Found between contact keywords", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
end
// Rule unit: PII.7
rule "PII.7.0: Redact contact information if applicant is found"
when
$section: Section(getHeadline().containsString("applicant") ||
getHeadline().containsString("Primary contact") ||
getHeadline().containsString("Alternative contact") ||
containsString("Applicant") ||
containsString("Telephone number:"))
then
Stream.concat(entityCreationService.lineAfterStrings(List.of("Contact point:", "Contact:", "Alternative contact:", "European contact:", "No:", "Contact:", "Tel.:", "Tel:", "Telephone number:",
"Telephone No:", "Telephone:", "Phone No.", "Phone:", "Fax number:", "Fax:", "E-mail:", "Email:", "e-mail:", "E-mail address:"), "PII", EntityType.ENTITY, $section),
Stream.concat(
entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
))
.forEach(entity -> entity.redact("PII.7.0", "Applicant information was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.7.1: Redact contact information if applicant is found (non vertebrate study)"
rule "PII.7.0: Redact contact information if applicant is found (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(getHeadline().containsString("applicant") ||
@@ -1097,10 +937,10 @@ rule "PII.7.1: Redact contact information if applicant is found (non vertebrate
entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
))
.forEach(entity -> entity.redact("PII.7.1", "Applicant information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
.forEach(entity -> entity.redact("PII.7.0", "Applicant information was found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
end
rule "PII.7.2: Redact contact information if applicant is found (vertebrate study)"
rule "PII.7.1: Redact contact information if applicant is found (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(getHeadline().containsString("applicant") ||
@@ -1115,13 +955,14 @@ rule "PII.7.2: Redact contact information if applicant is found (vertebrate stud
entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
))
.forEach(entity -> entity.redact("PII.7.2", "Applicant information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
.forEach(entity -> entity.redact("PII.7.1", "Applicant information was found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
end
// Rule unit: PII.8
rule "PII.8.0: Redact contact information if producer is found"
rule "PII.8.0: Redact contact information if producer is found (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(containsStringIgnoreCase("producer of the plant protection") ||
containsStringIgnoreCase("producer of the active substance") ||
containsStringIgnoreCase("manufacturer of the active substance") ||
@@ -1137,25 +978,7 @@ rule "PII.8.0: Redact contact information if producer is found"
.forEach(entity -> entity.redact("PII.8.0", "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.8.1: Redact contact information if producer is found (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(containsStringIgnoreCase("producer of the plant protection") ||
containsStringIgnoreCase("producer of the active substance") ||
containsStringIgnoreCase("manufacturer of the active substance") ||
containsStringIgnoreCase("manufacturer:") ||
containsStringIgnoreCase("Producer or producers of the active substance"))
then
Stream.concat(entityCreationService.lineAfterStrings(List.of("Contact point:", "Contact:", "Alternative contact:", "European contact:", "No:", "Contact:", "Tel.:", "Tel:", "Telephone number:",
"Telephone No:", "Telephone:", "Phone No.", "Phone:", "Fax number:", "Fax:", "E-mail:", "Email:", "e-mail:", "E-mail address:"), "PII", EntityType.ENTITY, $section),
Stream.concat(
entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
))
.forEach(entity -> entity.redact("PII.8.1", "Producer was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.8.2: Redact contact information if producer is found (vertebrate study)"
rule "PII.8.1: Redact contact information if producer is found (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$section: Section(containsStringIgnoreCase("producer of the plant protection") ||
@@ -1170,35 +993,27 @@ rule "PII.8.2: Redact contact information if producer is found (vertebrate study
entityCreationService.betweenStrings("No:", "Fax", "PII", EntityType.ENTITY, $section),
entityCreationService.betweenStrings("Contact:", "Tel", "PII", EntityType.ENTITY, $section)
))
.forEach(entity -> entity.redact("PII.8.2", "Producer was found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
.forEach(entity -> entity.redact("PII.8.1", "Producer was found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
end
// Rule unit: PII.9
rule "PII.9.0: Redact between \"AUTHOR(S)\" and \"(STUDY) COMPLETION DATE\""
when
$document: Document(containsStringIgnoreCase("AUTHOR(S)"), containsAnyStringIgnoreCase("COMPLETION DATE", "STUDY COMPLETION DATE"))
then
entityCreationService.shortestBetweenAnyStringIgnoreCase(List.of("AUTHOR(S)", "AUTHOR(S):"), List.of("COMPLETION DATE", "COMPLETION DATE:", "STUDY COMPLETION DATE", "STUDY COMPLETION DATE:"), "PII", EntityType.ENTITY, $document)
.forEach(authorEntity -> authorEntity.redact("PII.9.0", "AUTHOR(S) was found", "Reg (EC) No 1107/2009 Art. 63 (2e)"));
end
rule "PII.9.1: Redact between \"AUTHOR(S)\" and \"(STUDY) COMPLETION DATE\" (non vertebrate study)"
rule "PII.9.0: Redact between \"AUTHOR(S)\" and \"(STUDY) COMPLETION DATE\" (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$document: Document(containsStringIgnoreCase("AUTHOR(S)"), containsAnyStringIgnoreCase("COMPLETION DATE", "STUDY COMPLETION DATE"))
then
entityCreationService.shortestBetweenAnyStringIgnoreCase(List.of("AUTHOR(S)", "AUTHOR(S):"), List.of("COMPLETION DATE", "COMPLETION DATE:", "STUDY COMPLETION DATE", "STUDY COMPLETION DATE:"), "PII", EntityType.ENTITY, $document)
.forEach(authorEntity -> authorEntity.redact("PII.9.1", "AUTHOR(S) was found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
.forEach(authorEntity -> authorEntity.redact("PII.9.0", "AUTHOR(S) was found", "Article 39(e)(3) of Regulation (EC) No 178/2002"));
end
rule "PII.9.2: Redact between \"AUTHOR(S)\" and \"(STUDY) COMPLETION DATE\" (vertebrate study)"
rule "PII.9.1: Redact between \"AUTHOR(S)\" and \"(STUDY) COMPLETION DATE\" (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$document: Document(containsStringIgnoreCase("AUTHOR(S)"), containsAnyStringIgnoreCase("COMPLETION DATE", "STUDY COMPLETION DATE"))
then
entityCreationService.shortestBetweenAnyStringIgnoreCase(List.of("AUTHOR(S)", "AUTHOR(S):"), List.of("COMPLETION DATE", "COMPLETION DATE:", "STUDY COMPLETION DATE", "STUDY COMPLETION DATE:"), "PII", EntityType.ENTITY, $document)
.forEach(authorEntity -> authorEntity.redact("PII.9.2", "AUTHOR(S) was found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
.forEach(authorEntity -> authorEntity.redact("PII.9.1", "AUTHOR(S) was found", "Article 39(e)(2) of Regulation (EC) No 178/2002"));
end
@@ -1285,52 +1100,38 @@ rule "ETC.1.0: Redact Purity"
// Rule unit: ETC.2
rule "ETC.2.0: Redact signatures"
when
$signature: Image(imageType == ImageType.SIGNATURE)
then
$signature.redact("ETC.2.0", "Signature Found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
end
rule "ETC.2.1: Redact signatures (non vertebrate study)"
rule "ETC.2.0: Redact signatures (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$signature: Image(imageType == ImageType.SIGNATURE)
then
$signature.redact("ETC.2.1", "Signature Found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
$signature.redact("ETC.2.0", "Signature Found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
end
rule "ETC.2.2: Redact signatures (vertebrate study)"
rule "ETC.2.1: Redact signatures (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$signature: Image(imageType == ImageType.SIGNATURE)
then
$signature.redact("ETC.2.2", "Signature Found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
$signature.redact("ETC.2.1", "Signature Found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
end
// Rule unit: ETC.3
rule "ETC.3.0: Redact logos"
when
$logo: Image(imageType == ImageType.LOGO)
then
$logo.redact("ETC.3.0", "Logo Found", "Reg (EC) No 1107/2009 Art. 63 (2g)");
end
rule "ETC.3.1: Skip logos (non vertebrate study)"
rule "ETC.3.0: Skip logos (non vertebrate study)"
when
not FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$logo: Image(imageType == ImageType.LOGO)
then
$logo.skip("ETC.3.1", "Logo Found");
$logo.skip("ETC.3.0", "Logo Found");
end
rule "ETC.3.2: Redact logos (vertebrate study)"
rule "ETC.3.1: Redact logos (vertebrate study)"
when
FileAttribute(label == "Vertebrate Study", value soundslike "Yes" || value.toLowerCase() == "y")
$logo: Image(imageType == ImageType.LOGO)
then
$logo.redact("ETC.3.2", "Logo Found", "Article 39(e)(3) of Regulation (EC) No 178/2002");
$logo.redact("ETC.3.1", "Logo Found", "Article 39(e)(2) of Regulation (EC) No 178/2002");
end
@@ -1368,7 +1169,6 @@ rule "ETC.5.0: Skip dossier_redaction entries if confidentiality is 'confidentia
end
rule "ETC.5.1: Remove dossier_redaction entries if confidentiality is not 'confidential'"
salience 256
when
not FileAttribute(label == "Confidentiality", value == "confidential")
$dossierRedaction: TextEntity(type() == "dossier_redaction")
@@ -1808,6 +1608,24 @@ rule "X.8.1: Remove Entity when intersected by imported Entity"
retract($other);
end
// Rule unit: X.9.0
rule "X.9.0: Merge mostly contained signatures"
when
$aiSignature: Image(imageType == ImageType.SIGNATURE, engines contains LayoutEngine.AI)
$signature: Image(imageType == ImageType.SIGNATURE, engines contains LayoutEngine.ALGORITHM, mostlyContains($aiSignature, 0.8))
then
$aiSignature.remove("X.9.0", "removed because already contained by alogrithm signature");
$signature.addEngine(LayoutEngine.AI);
end
// Rule unit: X.10.0
rule "X.10.0: remove false positives of ai"
when
$anyImage: Image(engines contains LayoutEngine.ALGORITHM)
$aiSignature: Image(imageType == ImageType.SIGNATURE, engines contains LayoutEngine.AI, !mostlyContainedBy($anyImage, 0.8))
then
$aiSignature.remove("X.10.0", "Removed because false positive");
end
//------------------------------------ File attributes rules ------------------------------------
@@ -54,6 +54,8 @@ import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.ManualRecategorization;
import com.iqser.red.service.persistence.service.v1.api.shared.model.annotations.entitymapped.ManualLegalBasisChange;
import com.knecon.fforesight.service.layoutparser.internal.api.data.redaction.LayoutEngine;
global Document document
global EntityCreationService entityCreationService
global ManualChangesApplicationService manualChangesApplicationService
@@ -1299,7 +1301,6 @@ rule "TAB.7.0: Indicator (Species)"
.ifPresent(redactionEntity -> redactionEntity.apply("TAB.7.0", "Vertebrate study found"));
end
//------------------------------------ Manual redaction rules ------------------------------------
// Rule unit: MAN.0
@@ -1561,6 +1562,26 @@ rule "X.8.1: Remove Entity when intersected by imported Entity"
retract($other);
end
// Rule unit: X.9.0
rule "X.9.0: Merge mostly contained signatures"
when
$aiSignature: Image(imageType == ImageType.SIGNATURE, engines contains LayoutEngine.AI)
$signature: Image(imageType == ImageType.SIGNATURE, engines contains LayoutEngine.ALGORITHM, mostlyContains($aiSignature, 0.8))
then
$aiSignature.remove("X.9.0", "removed because already contained by alogrithm signature");
$signature.addEngine(LayoutEngine.AI);
end
// Rule unit: X.10.0
rule "X.10.0: remove false positives of ai"
when
$anyImage: Image(engines contains LayoutEngine.ALGORITHM)
$aiSignature: Image(imageType == ImageType.SIGNATURE, engines contains LayoutEngine.AI, !mostlyContainedBy($anyImage, 0.8))
then
$aiSignature.remove("X.10.0", "Removed because false positive");
end
//------------------------------------ File attributes rules ------------------------------------
@@ -25,9 +25,9 @@ public class RuleFileMigrationTest {
// Put your redaction service drools paths and dossier-templates paths both RM and DM here
static final List<String> ruleFileDirs = List.of(
"/home/kschuettler/iqser/redaction/redaction-service/redaction-service-v1/redaction-service-server-v1/src/test/resources/drools",
"/home/kschuettler/iqser/fforesight/dossier-templates-v2",
"/home/kschuettler/iqser/redaction/dossier-templates-v2");
"/Users/maverickstuder/Documents/RedactManager/redaction-service/redaction-service-v1/redaction-service-server-v1/src/test/resources/drools",
"/Users/maverickstuder/Documents/DocuMine/dossier-templates-v2/",
"/Users/maverickstuder/Documents/RedactManager/dossier-templates-v2/");
@Test
@@ -36,11 +36,7 @@ public class RuleFileMigrationTest {
void migrateAllEntityRules() {
for (String ruleFileDir : ruleFileDirs) {
Files.walk(Path.of(ruleFileDir))
.filter(this::isEntityRuleFile)
.map(Path::toFile)
.peek(System.out::println)
.forEach(RuleFileMigrator::migrateFile);
Files.walk(Path.of(ruleFileDir)).filter(this::isEntityRuleFile).map(Path::toFile).peek(System.out::println).forEach(RuleFileMigrator::migrateFile);
}
}