test publish stuff

.gitlab-ci.yml

@@ -24,9 +24,13 @@ deploy:
 
 pages:
   stage: build
+  tags:
+    - dind
   script:
+    - echo "Generating Javadoc..."
+    - gradle generateJavaDoc -PjavadocDestinationDir="javadoc"
     - mkdir public
-    - mv redaction-service-v1/index.html public/
+    - mv redaction-service-v1/redaction-service-server-v1/javadoc/* public/
   artifacts:
     paths:
       - public

redaction-service-v1/index.html

@@ -1,22 +0,0 @@
-<!DOCTYPE html>
-<html lang="en">
-<head>
-    <meta charset="UTF-8">
-    <meta name="viewport" content="width=device-width, initial-scale=1.0">
-    <title>Dummy Page</title>
-</head>
-<body>
-<header>
-    <h1>Welcome to the Dummy Page</h1>
-</header>
-<main>
-    <section>
-        <p>This is a simple HTML page created as a placeholder or for testing purposes. You can add more content and styles to expand it.</p>
-        <a href="https://example.com">Visit Example</a>
-    </section>
-</main>
-<footer>
-    <p>&copy; 2024 Dummy Page. All rights reserved.</p>
-</footer>
-</body>
-</html>

redaction-service-v1/redaction-service-server-v1/build.gradle.kts

@@ -84,9 +84,6 @@ tasks.test {
     maxHeapSize = "1024m"
 }
 
-
-
-
 tasks.named<BootBuildImage>("bootBuildImage") {
 
     environment.put("BPE_DELIM_JAVA_TOOL_OPTIONS", " ")
@@ -113,3 +110,40 @@ tasks.named<BootBuildImage>("bootBuildImage") {
         tags.set(listOf(dockerTag))
     }
 }
+
+fun parseDroolsImports(droolsFilePath: String): List<String> {
+    val imports = mutableListOf<String>()
+    val importPattern = Regex("^import\\s+(com\\.iqser\\.red\\.service\\.redaction\\.v1\\.[\\w.]+);")
+    val desiredPrefix = "com.iqser.red.service.redaction.v1"
+
+    File(droolsFilePath).forEachLine { line ->
+        importPattern.find(line)?.let { matchResult ->
+            val importPath = matchResult.groupValues[1].trim()
+            if (importPath.startsWith(desiredPrefix)) {
+                val formattedPath = importPath.replace('.', '/')
+                imports.add("$formattedPath.java")
+            }
+        }
+    }
+
+    return imports
+}
+
+val droolsImports = parseDroolsImports("redaction-service-v1/redaction-service-server-v1/src/main/resources/drools/all_rules_documine.drl")
+
+tasks.register("generateJavaDoc", Javadoc::class) {
+    dependsOn("compileJava")
+    dependsOn("delombok")
+    classpath = project.sourceSets["main"].runtimeClasspath
+    source = fileTree("${buildDir}/generated/sources/delombok/java/main") {
+        include(droolsImports)
+    }
+    destinationDir = file(project.findProperty("javadocDestinationDir")?.toString() ?: "")
+
+    options.memberLevel = JavadocMemberLevel.PUBLIC
+    (options as StandardJavadocDocletOptions).apply {
+        header = "Redaction Service ${project.version}"
+        footer = "Redaction Service ${project.version}"
+        title = "API Documentation for Redaction Service ${project.version}"
+    }
+}

redaction-service-v1/redaction-service-server-v1/src/main/java/com/iqser/red/service/redaction/v1/server/service/EntityChangeLogService.java

@@ -74,13 +74,34 @@ public class EntityChangeLogService {
                 .collect(Collectors.toSet());
         List<EntityLogEntry> removedEntries = previousEntityLogEntries.stream()
                 .filter(entry -> !existingIds.contains(entry.getId()))
+                .collect(Collectors.toList());
+        List<EntityLogEntry> removedDossierRedaction = removedEntries.stream()
+                .filter(e -> e.getState() == EntryState.REMOVED && e.getType().equals("dossier_redaction"))
                 .toList();
+        previousEntityLogEntries.removeAll(removedDossierRedaction);
+        removedEntries.removeAll(removedDossierRedaction);
         removedEntries.forEach(entry -> entry.getChanges().add(new Change(analysisNumber, ChangeType.REMOVED, now)));
         removedEntries.forEach(entry -> entry.setState(EntryState.REMOVED));
+        removedEntries.forEach(entry -> addManualChangeForDictionaryRemovals(entry, manualRedactions));
         newEntityLogEntries.addAll(removedEntries);
     }
 
 
+    private void addManualChangeForDictionaryRemovals(EntityLogEntry entry, ManualRedactions manualRedactions) {
+
+        if (manualRedactions == null || manualRedactions.getIdsToRemove().isEmpty()) {
+            return;
+        }
+
+        manualRedactions.getIdsToRemove()
+                .stream()
+                .filter(IdRemoval::isRemoveFromDictionary)//
+                .filter(removed -> removed.getAnnotationId().equals(entry.getId()))//
+                .findFirst()//
+                .ifPresent(idRemove -> entry.getManualChanges().add(ManualChangeFactory.toManualChange(idRemove, false)));
+    }
+
+
     private ChangeType calculateChangeType(EntryState state, EntryState previousState) {
 
         if (state.equals(previousState)) {

redaction-service-v1/redaction-service-server-v1/src/test/resources/drools/acceptance_rules.drl

@@ -702,7 +702,6 @@ rule "ETC.5.0: Skip dossier_redaction entries if confidentiality is 'confidentia
     end
 
 rule "ETC.5.1: Remove dossier_redaction entries if confidentiality is not 'confidential'"
-    salience 256
     when
         not FileAttribute(label == "Confidentiality", value == "confidential")
         $dossierRedaction: TextEntity(type() == "dossier_redaction")

redaction-service-v1/redaction-service-server-v1/src/test/resources/drools/all_redact_manager_rules.drl

@@ -1160,7 +1160,6 @@ rule "ETC.5.0: Skip dossier_redaction entries if confidentiality is 'confidentia
     end
 
 rule "ETC.5.1: Remove dossier_redaction entries if confidentiality is not 'confidential'"
-    salience 256
     when
         not FileAttribute(label == "Confidentiality", value == "confidential")
         $dossierRedaction: TextEntity(type() == "dossier_redaction")

redaction-service-v1/redaction-service-server-v1/src/test/resources/drools/rules.drl

@@ -812,7 +812,6 @@ rule "ETC.5.0: Skip dossier_redaction entries if confidentiality is 'confidentia
     end
 
 rule "ETC.5.1: Remove dossier_redaction entries if confidentiality is not 'confidential'"
-    salience 256
     when
         not FileAttribute(label == "Confidentiality", value == "confidential")
         $dossierRedaction: TextEntity(type() == "dossier_redaction")

redaction-service-v1/redaction-service-server-v1/src/test/resources/performance/dictionaries/EFSA_sanitisation_GFL_v1/rules.drl

@@ -459,7 +459,6 @@ rule "ETC.5.0: Skip dossier_redaction entries if confidentiality is 'confidentia
     end
 
 rule "ETC.5.1: Remove dossier_redaction entries if confidentiality is not 'confidential'"
-    salience 256
     when
         not FileAttribute(label == "Confidentiality", value == "confidential")
         $dossierRedaction: TextEntity(type() == "dossier_redaction")

redaction-service-v1/rules-management/src/main/resources/all_redact_manager_rules.drl

@@ -1169,7 +1169,6 @@ rule "ETC.5.0: Skip dossier_redaction entries if confidentiality is 'confidentia
     end
 
 rule "ETC.5.1: Remove dossier_redaction entries if confidentiality is not 'confidential'"
-    salience 256
     when
         not FileAttribute(label == "Confidentiality", value == "confidential")
         $dossierRedaction: TextEntity(type() == "dossier_redaction")